BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17691
(673 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/382 (53%), Positives = 243/382 (63%), Gaps = 70/382 (18%)
Query: 315 FDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQ 374
F L Q MWLGYPGTSGA +MDYIITD TSP +A QYSEKLA+MP T+FIGDH
Sbjct: 333 FALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHAN 392
Query: 375 MFPHLKERFIVSGK-----YSEKLAF-----------MPDTYFI-------GDHNQM--- 408
MFPHLK++ ++ K Y ++ +PD + GD+
Sbjct: 393 MFPHLKKKAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSNT 452
Query: 409 ---FPHLKERFIVSGKT-MIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVIT 464
P + I MI GQ+Q ++NG + NGLAT Q N K ATGEEVP++I++T
Sbjct: 453 ALNMPVIPMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAATGEEVPRTIIVT 512
Query: 465 SRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISXXX 524
+R QYGLPEDAIVYCNFNQLYKIDPSTLQMW N+LK
Sbjct: 513 TRSQYGLPEDAIVYCNFNQLYKIDPSTLQMWANILKR----------------------- 549
Query: 525 XXXXXXXSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEE 584
VPNS+LWLL+FPAVGE NIQ AQ +GL Q+RI+FS VA KEE
Sbjct: 550 -----------------VPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEE 592
Query: 585 HVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA 644
HVRRGQLADVCLDTPLCNGHTT MDVLW GTP+VT+PGETLASRVAASQL LGC ELIA
Sbjct: 593 HVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIA 652
Query: 645 RTHKEYQDIAIRLGTDRDYCEK 666
+ +EY+DIA++LGTD +Y +K
Sbjct: 653 KNRQEYEDIAVKLGTDLEYLKK 674
Score = 231 bits (588), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/148 (78%), Positives = 124/148 (83%)
Query: 146 CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALL 205
CPTHADSLNNLANIKREQG IEEA RLY KALEVFPEFAAAHSNLASVLQQQGKL +AL+
Sbjct: 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64
Query: 206 HYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS 265
HYKEAIRI P+FADAYSNMGNTLKEMQD+QGALQCY+RAIQINP FADAHSNLASIHKDS
Sbjct: 65 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 124
Query: 266 GKRGFFIRTDLNSAYFWLLLLDAHSNLA 293
G I + + DA+ NLA
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLA 152
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 94/157 (59%), Gaps = 38/157 (24%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALK-----------------------EKGQ--- 35
I AI +YR A++L+P+FPDAYCNLA+ L+ EK +
Sbjct: 127 IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPS 186
Query: 36 --PNFPDAYC---NLANALKEK------GQINVLHKPPYKYTRELAPGN-RIRIGYVSSD 83
P+ Y A+ E+ +INVLHKPPY++ ++L + R+R+GYVSSD
Sbjct: 187 VHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSD 246
Query: 84 FGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTF 120
FGNHPTSHLMQS+PGMHN + E+FCYALSPDDGT F
Sbjct: 247 FGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNF 283
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 78/133 (58%), Gaps = 6/133 (4%)
Query: 102 KSRVEIFCYALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIK 160
+ +E+F P+ S + SVL ++ EA Y A+R+ PT AD+ +N+ N
Sbjct: 33 RKALEVF-----PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87
Query: 161 REQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA 220
+E ++ A + Y +A+++ P FA AHSNLAS+ + G + +A+ Y+ A++++P F DA
Sbjct: 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147
Query: 221 YSNMGNTLKEMQD 233
Y N+ + L+ + D
Sbjct: 148 YCNLAHCLQIVCD 160
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 15/181 (8%)
Query: 36 PNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGN--HPTSHLM 93
P D+ NLAN +E+G I + Y+ E+ P S+ + L
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRL-YRKALEVFP----EFAAAHSNLASVLQQQGKLQ 60
Query: 94 QSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQ-VSEAEECYNTALRLCPTHADS 152
+++ MH K + I SP +S + + L +Q V A +CY A+++ P AD+
Sbjct: 61 EAL--MHYKEAIRI-----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA 113
Query: 153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIR 212
+NLA+I ++ G I EA Y AL++ P+F A+ NLA LQ TD K+ +
Sbjct: 114 HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173
Query: 213 I 213
I
Sbjct: 174 I 174
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 34/119 (28%)
Query: 215 PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG-------- 266
P+ AD+ +N+ N +E +I+ A++ Y +A+++ P FA AHSNLAS+ + G
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 267 -KRGFFIRTDLNSAYFWL-------------------------LLLDAHSNLASIHKDS 299
K I AY + DAHSNLASIHKDS
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 124
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 15/65 (23%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
I+ A+ YR+A+E+ P F A+ NLA+ L+++G+ P F DAY N+
Sbjct: 25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84
Query: 47 NALKE 51
N LKE
Sbjct: 85 NTLKE 89
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKE---------------KGQPNFPDAYCNLANAL 49
A+ Y+ AI + P F DAY N+ N LKE + P F DA+ NLA+
Sbjct: 62 ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH 121
Query: 50 KEKGQI 55
K+ G I
Sbjct: 122 KDSGNI 127
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 209 bits (531), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 127/250 (50%), Positives = 151/250 (60%), Gaps = 30/250 (12%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
++ A Y +AIE QPNF A+ NL +G+ PNF DAY NL
Sbjct: 151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210
Query: 47 NALKEKGQINVLHKPPYKYTR--ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSR 104
N LKE + + Y R L+P + + G ++ + L +
Sbjct: 211 NVLKEA---RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT----YRRA 263
Query: 105 VEIFCYALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQ 163
+E L P + + + L V+EAE+CYNTALRLCPTHADSLNNLANIKREQ
Sbjct: 264 IE-----LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318
Query: 164 GYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN 223
G IEEA RLY KALEVFPEFAAAHSNLASVLQQQGKL +AL+HYKEAIRI P+FADAYSN
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 378
Query: 224 MGNTLKEMQD 233
MGNTLKEMQD
Sbjct: 379 MGNTLKEMQD 388
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 139/312 (44%), Gaps = 50/312 (16%)
Query: 12 AIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQ-- 54
AI+ P +AY NL N KE+GQ P+F D Y NLA AL G
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 55 ------INVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF 108
++ L P Y V SD GN L++++ +
Sbjct: 119 GAVQAYVSALQYNPDLYC-------------VRSDLGN-----LLKALGRLEEAKA---- 156
Query: 109 CYALSPDDGTTFSYIISVLLLIQVSEAE-----ECYNTALRLCPTHADSLNNLANIKREQ 163
CY + + F+ S L + ++ E + A+ L P D+ NL N+ +E
Sbjct: 157 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA 216
Query: 164 GYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN 223
+ A YL+AL + P A H NLA V +QG + A+ Y+ AI +QP F DAY N
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276
Query: 224 MGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWL 283
+ N LKE + A CY+ A+++ P AD+ +NLA+I ++ G +R + +
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336
Query: 284 LLLDAHSNLASI 295
AHSNLAS+
Sbjct: 337 EFAAAHSNLASV 348
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 138/280 (49%), Gaps = 28/280 (10%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKG-------------QPNFPDAYC---NLANA 48
AI+ YR A+ L+P+F D Y NLA AL G Q N PD YC +L N
Sbjct: 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNL 144
Query: 49 LKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF 108
LK G++ K Y E P + + F L +H+ +
Sbjct: 145 LKALGRLEEA-KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL-----AIHHFEKA--- 195
Query: 109 CYALSPDDGTTFSYIISVLLLIQV-SEAEECYNTALRLCPTHADSLNNLANIKREQGYIE 167
L P+ + + +VL ++ A Y AL L P HA NLA + EQG I+
Sbjct: 196 -VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID 254
Query: 168 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227
A Y +A+E+ P F A+ NLA+ L+++G + +A Y A+R+ P+ AD+ +N+ N
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314
Query: 228 LKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+E +I+ A++ Y +A+++ P FA AHSNLAS+ + GK
Sbjct: 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 100/193 (51%), Gaps = 9/193 (4%)
Query: 112 LSPD--DGTTFSYIISVLLLIQVSEAE---ECYNTALRLCPTHADSLNNLANIKREQGYI 166
L PD DG YI L+ + E + Y +AL+ P ++L N+ + G +
Sbjct: 96 LKPDFIDG----YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRL 151
Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
EEA YLKA+E P FA A SNL V QG++ A+ H+++A+ + P+F DAY N+GN
Sbjct: 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211
Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLL 286
LKE + A+ Y RA+ ++P A H NLA ++ + G I T +
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271
Query: 287 DAHSNLASIHKDS 299
DA+ NLA+ K+
Sbjct: 272 DAYCNLANALKEK 284
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 82/178 (46%), Gaps = 60/178 (33%)
Query: 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNL 45
LIDLAIDTYRRAIELQP+FPDAYCNLANALKEKG P D+ NL
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311
Query: 46 ANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRV 105
AN +E+G I + ++ K+ +
Sbjct: 312 ANIKREQGNI--------------------------------------EEAVRLYRKA-L 332
Query: 106 EIFCYALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKRE 162
E+F P+ S + SVL ++ EA Y A+R+ PT AD+ +N+ N +E
Sbjct: 333 EVF-----PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%)
Query: 156 LANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP 215
LA+ + + G E A R ++ P+ L+S+ Q +L + AI+ P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 216 SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLAS 260
A+AYSN+GN KE +Q A++ Y A+++ P F D + NLA+
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA 109
>pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2VSY|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2JLB|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2JLB|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2XGM|A Chain A, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGM|B Chain B, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGO|A Chain A, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGO|B Chain B, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGS|A Chain A, Xcogt In Complex With C-Udp
pdb|2XGS|B Chain B, Xcogt In Complex With C-Udp
Length = 568
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 92/196 (46%), Gaps = 40/196 (20%)
Query: 465 SRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISXXX 524
SR Q GLPE +V C FN YK++P ++
Sbjct: 367 SRTQCGLPEQGVVLCCFNNSYKLNPQSM-------------------------------- 394
Query: 525 XXXXXXXSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEE 584
A VL+ VP+S+LWLL P +A ++A A A G+D R++F +
Sbjct: 395 --------ARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQ 446
Query: 585 HVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA 644
++ R + AD+ LDT N HTT+ D LWTG PV+T PGET A+RVA S LG E+
Sbjct: 447 YLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNV 506
Query: 645 RTHKEYQDIAIRLGTD 660
+ A+ L +D
Sbjct: 507 ADDAAFVAKAVALASD 522
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 315 FDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKL-----AFMP 364
F L QV WL YPGTSGA +MDY++ DA P AL YSE + AF P
Sbjct: 301 FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQP 355
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 62 PYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSV--PGMHNKSRVEIFCYALSPDDGTT 119
P TR + G +R+G+VS+ FG HPT L ++ + +++ +A S DDG+T
Sbjct: 194 PLAPTRVRSKGP-LRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGST 252
Query: 120 F 120
Sbjct: 253 L 253
>pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
pdb|2VSN|B Chain B, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
Length = 568
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 92/196 (46%), Gaps = 40/196 (20%)
Query: 465 SRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISXXX 524
SR Q GLPE +V C FN YK++P ++
Sbjct: 367 SRTQCGLPEQGVVLCCFNNSYKLNPQSM-------------------------------- 394
Query: 525 XXXXXXXSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEE 584
A VL+ VP+S+LWLL P +A ++A A A G+D R++F +
Sbjct: 395 --------ARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQ 446
Query: 585 HVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA 644
++ R + AD+ LDT N HTT+ D LWTG PV+T PGET A+RVA S LG E+
Sbjct: 447 YLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNV 506
Query: 645 RTHKEYQDIAIRLGTD 660
+ A+ L +D
Sbjct: 507 ADDAAFVAKAVALASD 522
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 315 FDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKL-----AFMP 364
F L QV WL YPGTSGA +MDY++ DA P AL YSE + AF P
Sbjct: 301 FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQP 355
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 62 PYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSV--PGMHNKSRVEIFCYALSPDDGTT 119
P TR + G +R+G+VS+ FG HPT L ++ + +++ +A S DDG+T
Sbjct: 194 PLAPTRVRSKGP-LRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGST 252
Query: 120 F 120
Sbjct: 253 L 253
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 67/118 (56%)
Query: 132 VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191
EA E Y AL L P A++ NL N +QG +EA Y KALE+ P A A NL
Sbjct: 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76
Query: 192 SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
+ +QG +A+ +Y++A+ + P A+A+ N+GN + D A++ Y +A++++P
Sbjct: 77 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 67/117 (57%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
A++ NL N +QG +EA Y KALE+ P A A NL + +QG +A+ +Y++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
A+ + P A+A+ N+GN + D A++ Y +A++++P A+A NL + + G
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 117
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 15/70 (21%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKG---------------QPNFPDAYCNLA 46
D AI+ Y++A+EL P +A+ NL NA ++G P +A+ NL
Sbjct: 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76
Query: 47 NALKEKGQIN 56
NA ++G +
Sbjct: 77 NAYYKQGDYD 86
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKG 34
D AI+ Y++A+EL P +A+ NL NA ++G
Sbjct: 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 117
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 68/117 (58%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
A++ NL N +QG +EA Y KALE++P A A NL + +QG +A+ +Y++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
A+ + P+ A+A+ N+GN + D A++ Y +A+++ P A+A NL + + G
Sbjct: 69 ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Query: 111 ALSPDDGTTFSYIISVLLLIQ--VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEE 168
A+ P + Y + Q EA E Y AL L P +A++ NL N +QG +E
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDE 61
Query: 169 ATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227
A Y KALE++P A A NL + +QG +A+ +Y++A+ + P+ A+A N+GN
Sbjct: 62 AIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNA 120
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%)
Query: 132 VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191
EA E Y AL L P +A++ NL N +QG +EA Y KALE++P A A NL
Sbjct: 59 YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLG 118
Query: 192 SVLQQQG 198
+ Q+QG
Sbjct: 119 NAKQKQG 125
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 15/67 (22%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
D AI+ Y++A+EL PN +A+ NL NA ++G PN +A+ NL
Sbjct: 25 YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLG 84
Query: 47 NALKEKG 53
NA ++G
Sbjct: 85 NAYYKQG 91
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKG 34
D AI+ Y++A+EL PN +A NL NA +++G
Sbjct: 93 YDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 68/117 (58%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
A++ NL N +QG +EA Y KALE+ P A A NL + +QG +A+ +Y++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
A+ + P+ A+A+ N+GN + D A++ Y +A++++P A+A NL + + G
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 111 ALSPDDGTTFSYIISVLLLIQ--VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEE 168
A+ P + Y + Q EA E Y AL L P +A++ NL N +QG +E
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 169 ATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227
A Y KALE+ P A A NL + +QG +A+ +Y++A+ + P+ A+A N+GN
Sbjct: 62 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 37/67 (55%)
Query: 132 VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191
EA E Y AL L P +A++ NL N +QG +EA Y KALE+ P A A NL
Sbjct: 59 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
Query: 192 SVLQQQG 198
+ Q+QG
Sbjct: 119 NAKQKQG 125
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 15/67 (22%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKG---------------QPNFPDAYCNLA 46
D AI+ Y++A+EL PN +A+ NL NA ++G PN +A+ NL
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 84
Query: 47 NALKEKG 53
NA ++G
Sbjct: 85 NAYYKQG 91
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKG 34
D AI+ Y++A+EL PN +A NL NA +++G
Sbjct: 93 YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 65/117 (55%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
A++ NL N +QG ++A Y KALE+ P A+A NL + +QG A+ +Y++
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
A+ + P+ A A+ GN + D Q A++ Y +A++++P A A NL + + G
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%)
Query: 137 ECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ 196
E Y AL L P +A + NL N +QG ++A Y KALE+ P A A + +
Sbjct: 30 EYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYK 89
Query: 197 QGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM 231
QG A+ Y++A+ + P+ A A N+GN ++
Sbjct: 90 QGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQ 124
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 112 LSPDDGTTFSYIISVLLLIQ--VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
L P++ + + Y + Q +A E Y AL L P +A + N +QG ++A
Sbjct: 38 LDPNNASAW-YNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKA 96
Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQG 198
Y KALE+ P A A NL + Q+QG
Sbjct: 97 IEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKG 34
AI+ Y++A+EL PN A+ NL NA ++G
Sbjct: 28 AIEYYQKALELDPNNASAWYNLGNAYYKQG 57
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKG 34
AI+ Y++A+EL PN A NL NA +++G
Sbjct: 96 AIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%)
Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSR 243
A A NL + +QG +A+ +Y++A+ + P+ A+A+ N+GN + D A++ Y +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 244 AIQINPGFADAHSNLASIHKDSG 266
A++++P A+A NL + + G
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
A++ NL N +QG +EA Y KALE+ P A A NL + +QG +A+ +Y++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 210 AIRIQPSFADAYSNMGNT 227
A+ + P+ A+A N+GN
Sbjct: 69 ALELDPNNAEAKQNLGNA 86
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 111 ALSPDDGTTFSYIISVLLLIQ--VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEE 168
A+ P + Y + Q EA E Y AL L P +A++ NL N +QG +E
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 169 ATRLYLKALEVFPEFAAAHSNLASVLQQQG 198
A Y KALE+ P A A NL + Q+QG
Sbjct: 62 AIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 15/66 (22%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKG---------------QPNFPDAYCNLAN 47
D AI+ Y++A+EL PN +A+ NL NA ++G PN +A NL N
Sbjct: 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85
Query: 48 ALKEKG 53
A +++G
Sbjct: 86 AKQKQG 91
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSR 243
A A NL + +QG +A+ +Y++A+ + P A+A+ N+GN + D A++ Y +
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 244 AIQINP 249
A++++P
Sbjct: 63 ALELDP 68
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
A++ NL N +QG +EA Y KALE+ P A A NL + +QG +A+ +Y++
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 210 AIRIQP 215
A+ + P
Sbjct: 63 ALELDP 68
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 133 SEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFP 181
EA E Y AL L P A++ NL N +QG +EA Y KALE+ P
Sbjct: 20 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKG 34
D AI+ Y++A+EL P +A+ NL NA ++G
Sbjct: 20 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 51
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 50/109 (45%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
A+ L N + + E A Y KA+E+ P A N A+ + G A+ +
Sbjct: 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71
Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL 258
AI I P+++ AY MG L + A+ Y +A++++P SNL
Sbjct: 72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
Score = 32.3 bits (72), Expect = 0.90, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 39/86 (45%)
Query: 139 YNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG 198
Y A+ L P +A N A + G A + +A+ + P ++ A+ + L
Sbjct: 35 YGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLN 94
Query: 199 KLTDALLHYKEAIRIQPSFADAYSNM 224
K +A+ +YK+A+ + P SN+
Sbjct: 95 KHVEAVAYYKKALELDPDNETYKSNL 120
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 168 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227
E L ALE+ P A H++L + A + + A+ ++P A ++ +G T
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215
Query: 228 LKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
L Q AL Y+RA+ INPG+ N+A
Sbjct: 216 LANGNRPQEALDAYNRALDINPGYVRVMYNMA 247
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 9/124 (7%)
Query: 133 SEAEEC---YNTALRLCPTHAD---SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAA 186
+E EC + AL + P A SL L N+ Y A L +A+E+ P+ A
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS--NNYDSAAANLR-RAVELRPDDAQL 208
Query: 187 HSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQ 246
+ L + L + +AL Y A+ I P + NM + M A + RAI
Sbjct: 209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268
Query: 247 INPG 250
+ G
Sbjct: 269 MQVG 272
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 168 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227
E L ALE+ P A H++L + A + + A+ ++P A ++ +G T
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215
Query: 228 LKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
L Q AL Y+RA+ INPG+ N+A
Sbjct: 216 LANGNRPQEALDAYNRALDINPGYVRVMYNMA 247
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 9/124 (7%)
Query: 133 SEAEEC---YNTALRLCPTHAD---SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAA 186
+E EC + AL + P A SL L N+ Y A L +A+E+ P+ A
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS--NNYDSAAANLR-RAVELRPDDAQL 208
Query: 187 HSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQ 246
+ L + L + +AL Y A+ I P + NM + M A + RAI
Sbjct: 209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268
Query: 247 INPG 250
+ G
Sbjct: 269 MQVG 272
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 52/113 (46%)
Query: 155 NLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ 214
++ + KR +G + A R Y K L+ P L G DA+ K+ + +
Sbjct: 10 DIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD 69
Query: 215 PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ A+AY +G+ + + Q A+ RAI +N +ADA+ L ++ G+
Sbjct: 70 TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE 122
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
Query: 135 AEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS-- 192
A Y L+ P + ++L L + G +A K + + A A+ L S
Sbjct: 24 AIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83
Query: 193 -VLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251
++ ++ DAL + AI + +ADAY +G M + A++ Y + I I PGF
Sbjct: 84 FMIDEKQAAIDAL---QRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF 140
Query: 252 ADAHSNLASIHKDSGKR 268
A+ ++ ++ G R
Sbjct: 141 IRAYQSIGLAYEGKGLR 157
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVF--------PEFAAAHSNLASVLQQQG 198
P A LNNLA + + QG EE Y +ALE++ P A +NLAS +QG
Sbjct: 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
Query: 199 KLTDALLHYKEAI 211
K DA YKE +
Sbjct: 184 KYQDAETLYKEIL 196
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEV--------FPEFAAAHSNLASVLQQQG 198
P A +LNNLA + ++G +EA L +ALE+ P+ A +NLA + Q QG
Sbjct: 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG 141
Query: 199 KLTDALLHYKEAIRI 213
K + +Y+ A+ I
Sbjct: 142 KAEEVEYYYRRALEI 156
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 54/108 (50%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
P A + N N ++G +A + Y +A++ P+ A +SN A+ + + AL
Sbjct: 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKD 72
Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADA 254
+E I+++P+F Y+ L+ M+D A+ Y +A+ ++ +A
Sbjct: 73 CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 37/80 (46%)
Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
P+ A N + Q+G A+ HY EAI+ P A YSN ++ + Q AL+
Sbjct: 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKD 72
Query: 241 YSRAIQINPGFADAHSNLAS 260
IQ+ P F ++ A+
Sbjct: 73 CEECIQLEPTFIKGYTRKAA 92
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 213 IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIH 262
+ P A N GN + D A++ Y+ AI+ NP A +SN A+ +
Sbjct: 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACY 60
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVF--------PEFAAAHSNLASVLQQQG 198
P A LNNLA + + QG EE Y +ALE++ P A +NLAS +QG
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG 209
Query: 199 KLTDALLHYKEAI 211
K A YKE +
Sbjct: 210 KFKQAETLYKEIL 222
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEV--------FPEFAAAHSNLASVLQQQG 198
P A +LNNLA + ++G +EA L +ALE+ P+ A +NLA + Q QG
Sbjct: 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG 167
Query: 199 KLTDALLHYKEAIRI 213
K + +Y+ A+ I
Sbjct: 168 KYEEVEYYYQRALEI 182
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 70/170 (41%), Gaps = 26/170 (15%)
Query: 122 YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV-- 179
Y ++V L Q E E T+ P A LN LA + R+Q ++A L AL +
Sbjct: 43 YEVAVPLCKQALEDLE--KTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100
Query: 180 ------FPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ--------PSFADAYSNMG 225
P AA +NLA + ++GK +A K A+ I+ P A +N+
Sbjct: 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA 160
Query: 226 NTLKEMQDIQGALQCYSRAIQI--------NPGFADAHSNLASIHKDSGK 267
+ + Y RA++I +P A +NLAS + GK
Sbjct: 161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK 210
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVF--------PEFAAAHSNLASVLQQQG 198
P A L+NLA + + QG EE Y +ALE++ P A +NLAS +QG
Sbjct: 124 PDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
Query: 199 KLTDALLHYKEAI 211
K DA YKE +
Sbjct: 184 KYQDAETLYKEIL 196
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEV--------FPEFAAAHSNLASVLQQQG 198
P A +LNNLA + ++G +EA L +ALE+ P+ A SNLA + Q QG
Sbjct: 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQG 141
Query: 199 KLTDALLHYKEAIRI 213
K + +Y+ A+ I
Sbjct: 142 KAEEVEYYYRRALEI 156
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 47/108 (43%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
P A N N ++G A R Y +A++ PE A +SN A+ L + + AL
Sbjct: 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDD 69
Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADA 254
IR+ F Y L M++ A + Y A+Q++P +A
Sbjct: 70 CDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 197 QGKLTDALLHYKEAIRIQPSFAD-AYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
QG + +AL +E ++ +P D AY MGN +++ D Q AL Y AI++NP
Sbjct: 13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 166 IEEATRLYLKALE-----VFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA 220
+E LYL+A + P+ + L + G+ A+ + A+ ++P
Sbjct: 193 LEGVKELYLEAAHQNGDMIDPDL---QTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL 249
Query: 221 YSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
++ +G TL + A++ Y+RA++I PGF + NL
Sbjct: 250 WNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLG 288
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 84/213 (39%), Gaps = 22/213 (10%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYK 64
AI +R +ELQPN A LA + DA L N +K+ P YK
Sbjct: 118 AIVALQRCLELQPNNLKALMALAVSYTNTSHQQ--DACEALKNWIKQN--------PKYK 167
Query: 65 Y---TRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFS 121
Y ++ +PG R+ D S +++ V ++ ++ + PD T
Sbjct: 168 YLVKNKKGSPGLTRRMSKSPVD------SSVLEGVKELYLEA-AHQNGDMIDPDLQTGLG 220
Query: 122 YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFP 181
+ L + + A + +N AL + P N L EEA Y +ALE+ P
Sbjct: 221 VLFH--LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278
Query: 182 EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ 214
F + NL G +A+ ++ A+ +Q
Sbjct: 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 164 GYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN 223
G A + AL V PE + + L + L + +A+ Y A+ IQP F + N
Sbjct: 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN 286
Query: 224 MG 225
+G
Sbjct: 287 LG 288
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 4/119 (3%)
Query: 133 SEAEECYNTALRLCPTHADSLNNLANI--KREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
EA++ + ALR + D L + K EQ + A +A+E+ A
Sbjct: 108 KEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKL--ALPYLQRAVELNENDTEARFQF 165
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
L +G L +AL + P ADA+ N G T ++ + AL+ +AI I P
Sbjct: 166 GMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 13/183 (7%)
Query: 88 PTSHLMQSVPGMHNKSR----------VEIFCYALSPDDGTTFSYIISVLLLIQVSEAEE 137
P M S+ G R E F A+ + YI LL V+E E
Sbjct: 16 PRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELER 75
Query: 138 C---YNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVL 194
Y+ AL L + A + N+ + +EA ++ KAL E L +VL
Sbjct: 76 ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVL 135
Query: 195 QQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADA 254
+ + AL + + A+ + + +A G L + AL ++ + +PG ADA
Sbjct: 136 VKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195
Query: 255 HSN 257
N
Sbjct: 196 FYN 198
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Query: 122 YIISVLLLIQVSEAEEC-YNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVF 180
Y ++V LLI+V+EA +N RL +L+NL G +EA + AL +
Sbjct: 92 YDLAVPLLIKVAEANPINFNVRFRL----GVALDNL-------GRFDEAIDSFKIALGLR 140
Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEA 210
P H +A +Q G+ +AL H+K+A
Sbjct: 141 PNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Query: 122 YIISVLLLIQVSEAEEC-YNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVF 180
Y ++V LLI+V+EA +N RL +L+NL G +EA + AL +
Sbjct: 92 YDLAVPLLIKVAEANPINFNVRFRL----GVALDNL-------GRFDEAIDSFKIALGLR 140
Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEA 210
P H +A +Q G+ +AL H+K+A
Sbjct: 141 PNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 122 YIISVLLLIQVSEAEEC-YNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVF 180
Y ++V LLI+V+EA +N RL +L NL G +EA + AL +
Sbjct: 92 YDLAVPLLIKVAEANPINFNVRFRL----GVALKNL-------GRFDEAIDSFKIALGLR 140
Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEA 210
P H +A +Q G+ +AL H+K+A
Sbjct: 141 PNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 122 YIISVLLLIQVSEAEEC-YNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVF 180
Y ++V LL++V+EA +N RL +L+NL G +EA + AL +
Sbjct: 92 YDLAVPLLVKVAEANPVNFNVRFRL----GVALDNL-------GRFDEAIDSFKIALGLR 140
Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEA 210
P H +A +Q G +AL H+K+A
Sbjct: 141 PNEGKVHRAIAYSYEQMGSHEEALPHFKKA 170
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 135 AEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALE--VFPEFAAAHSNLAS 192
A+E Y AL +A LNN EQ EEA + L+A + ++PE + NL
Sbjct: 103 ADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 162
Query: 193 VLQQQGKLTDALLHYKEAIRI---QPSFA 218
V Q K A ++++++R+ QPS A
Sbjct: 163 VSLQMKKPAQAKEYFEKSLRLNRNQPSVA 191
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 162 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAY 221
++G E+A KALE+ P A AH+ LA V Q + + A Y++A+ A
Sbjct: 62 QRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVL 121
Query: 222 SNMGNTLKEMQDIQGALQ 239
+N G L E + + A Q
Sbjct: 122 NNYGGFLYEQKRYEEAYQ 139
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 135 AEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALE--VFPEFAAAHSNLAS 192
A+E Y AL +A LNN EQ EEA + L+A + ++PE + NL
Sbjct: 90 ADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149
Query: 193 VLQQQGKLTDALLHYKEAIRI---QPSFA 218
V Q K A ++++++R+ QPS A
Sbjct: 150 VSLQXKKPAQAKEYFEKSLRLNRNQPSVA 178
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 162 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAY 221
++G E+A KALE+ P A AH+ LA V Q + + A Y++A+ A
Sbjct: 49 QRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEXEPKLADEEYRKALASDSRNARVL 108
Query: 222 SNMGNTLKEMQDIQGALQ 239
+N G L E + + A Q
Sbjct: 109 NNYGGFLYEQKRYEEAYQ 126
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 134 EAEECYNTALRLCPTHAD-----SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS 188
E +E + A+RL PT D L L N+ G ++A + AL V P +
Sbjct: 159 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS---GEYDKAVDCFTAALSVRPNDYLLWN 215
Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
L + L + +A+ Y+ A+ +QP + + N+G
Sbjct: 216 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 252
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
+ +A +C+ AL + P N L EEA Y +ALE+ P + + NL
Sbjct: 192 EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 251
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQ 214
G +A+ H+ EA+ +Q
Sbjct: 252 GISCINLGAHREAVEHFLEALNMQ 275
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 168 EATRLYLKALEVFPEF--AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
E L+L A+ + P L + G+ A+ + A+ ++P+ ++ +G
Sbjct: 159 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG 218
Query: 226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
TL + A+ Y RA+++ PG+ + NL
Sbjct: 219 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 252
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
Q+G L +A+L ++ A++ P +A+ +G T E + A+ R +++ P
Sbjct: 36 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 89
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 134 EAEECYNTALRLCPTHAD-----SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS 188
E +E + A+RL PT D L L N+ G ++A + AL V P +
Sbjct: 136 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS---GEYDKAVDCFTAALSVRPNDYLLWN 192
Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
L + L + +A+ Y+ A+ +QP + + N+G
Sbjct: 193 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 229
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
+ +A +C+ AL + P N L EEA Y +ALE+ P + + NL
Sbjct: 169 EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 228
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQ 214
G +A+ H+ EA+ +Q
Sbjct: 229 GISCINLGAHREAVEHFLEALNMQ 252
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 168 EATRLYLKALEVFPEF--AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
E L+L A+ + P L + G+ A+ + A+ ++P+ ++ +G
Sbjct: 136 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG 195
Query: 226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
TL + A+ Y RA+++ PG+ + NL
Sbjct: 196 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 229
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
Q+G L +A+L ++ A++ P +A+ +G T E + A+ R +++ P
Sbjct: 13 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 66
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 134 EAEECYNTALRLCPTHAD-----SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS 188
E +E + A+RL PT D L L N+ G ++A + AL V P +
Sbjct: 150 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS---GEYDKAVDCFTAALSVRPNDYLLWN 206
Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
L + L + +A+ Y+ A+ +QP + + N+G
Sbjct: 207 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 243
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
+ +A +C+ AL + P N L EEA Y +ALE+ P + + NL
Sbjct: 183 EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 242
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQ 214
G +A+ H+ EA+ +Q
Sbjct: 243 GISCINLGAHREAVEHFLEALNMQ 266
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 168 EATRLYLKALEVFPEF--AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
E L+L A+ + P L + G+ A+ + A+ ++P+ ++ +G
Sbjct: 150 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG 209
Query: 226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
TL + A+ Y RA+++ PG+ + NL
Sbjct: 210 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 243
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
Q+G L +A+L ++ A++ P +A+ +G T E + A+ R +++ P
Sbjct: 27 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 80
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 134 EAEECYNTALRLCPTHAD-----SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS 188
E +E + A+RL PT D L L N+ G ++A + AL V P +
Sbjct: 159 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS---GEYDKAVDCFTAALSVRPNDYLLWN 215
Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
L + L + +A+ Y+ A+ +QP + + N+G
Sbjct: 216 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 252
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
+ +A +C+ AL + P N L EEA Y +ALE+ P + + NL
Sbjct: 192 EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 251
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQ 214
G +A+ H+ EA+ +Q
Sbjct: 252 GISCINLGAHREAVEHFLEALNMQ 275
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 168 EATRLYLKALEVFPEF--AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
E L+L A+ + P L + G+ A+ + A+ ++P+ ++ +G
Sbjct: 159 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG 218
Query: 226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
TL + A+ Y RA+++ PG+ + NL
Sbjct: 219 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 252
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
Q+G L +A+L ++ A++ P +A+ +G T E + A+ R +++ P
Sbjct: 36 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 89
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 134 EAEECYNTALRLCPTHAD-----SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS 188
E +E + A+RL PT D L L N+ G ++A + AL V P +
Sbjct: 199 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS---GEYDKAVDCFTAALSVRPNDYLLWN 255
Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
L + L + +A+ Y+ A+ +QP + + N+G
Sbjct: 256 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 292
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
+ +A +C+ AL + P N L EEA Y +ALE+ P + + NL
Sbjct: 232 EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 291
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQ 214
G +A+ H+ EA+ +Q
Sbjct: 292 GISCINLGAHREAVEHFLEALNMQ 315
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 168 EATRLYLKALEVFPEF--AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
E L+L A+ + P L + G+ A+ + A+ ++P+ ++ +G
Sbjct: 199 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG 258
Query: 226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
TL + A+ Y RA+++ PG+ + NL
Sbjct: 259 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 292
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
Q+G L +A+L ++ A++ P +A+ +G T E + A+ R +++ P
Sbjct: 76 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 129
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 76/195 (38%), Gaps = 35/195 (17%)
Query: 112 LSPDDGTTFSYIISVLLLIQV------SEAEECYNTALRLCPTHADSLNNLANIKREQGY 165
L+PD+ SYI V L +++ +E E+ L + L A R +
Sbjct: 210 LNPDN----SYI-KVFLALKLQDVHAEAEGEKYIEEILDQISSQPYVLRYAAKFYRRKNS 264
Query: 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQ-------------GK--------LTDAL 204
+A L KALEV P + H + + Q GK ++ A+
Sbjct: 265 WNKALELLKKALEVTPTSSFLHHQMGLCYRAQMIQIKKATHNRPKGKDKLKVDELISSAI 324
Query: 205 LHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD 264
H+K A+ FA AY+++ N E A + +A+++ D H + IH
Sbjct: 325 FHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLE-NITDDHKH--QIHYH 381
Query: 265 SGKRGFFIRTDLNSA 279
G+ F R N+A
Sbjct: 382 YGRFQEFHRKSENTA 396
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 198 GKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSN 257
G + DAL Y EAI++ P YSN + D Q A + + + + P + +S
Sbjct: 18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR 77
Query: 258 LAS 260
A+
Sbjct: 78 KAA 80
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 225 GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
GN + +I ALQCYS AI+++P +SN ++ + G
Sbjct: 11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG 52
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
Query: 149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK 208
+ L N G I++A + Y +A+++ P +SN ++ ++G A
Sbjct: 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 209 EAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQ---INPGFADAHSNLAS 260
+ + ++P + YS L+ + + A + Y ++ NP + N+ +
Sbjct: 63 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 200 LTDALLHYKEAIRIQPSFAD------AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253
LT A+ Y+E +++ D A N+GNT + D Q A++ + ++I F D
Sbjct: 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258
Query: 254 ------AHSNLASIH 262
A+SNL + H
Sbjct: 259 RAAERRANSNLGNSH 273
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 13/107 (12%)
Query: 160 KREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAI------RI 213
+R +GY+E+A + A V P +A H V G+ A K+A+ I
Sbjct: 94 ERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEI 153
Query: 214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLAS 260
+ + A+ Y +MG + AL Y++A++ P D AS
Sbjct: 154 RSALAELYLSMGR-------LDEALAQYAKALEQAPKDLDLRVRYAS 193
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 18/197 (9%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
D A+ + RA++ P P+A LA + G L N E G+ V P
Sbjct: 22 DAALTLFERALKENPQDPEALYWLARTQLKLG----------LVNPALENGKTLVARTPR 71
Query: 63 YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSY 122
Y + + + Y ++ +L Q++ + + RV L G ++
Sbjct: 72 YLGGYMVLSEAYVAL-YRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA- 129
Query: 123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE 182
LL + +AE AL L T + + LA + G ++EA Y KALE P+
Sbjct: 130 -----LLGERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPK 183
Query: 183 FAAAHSNLASVLQQQGK 199
AS L +GK
Sbjct: 184 DLDLRVRYASALLLKGK 200
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 9/122 (7%)
Query: 135 AEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALE---------VFPEFAA 185
AE ++ AL + P + + + + G + A + +L ALE ++
Sbjct: 178 AERFFSQALSIAPEDPFVXHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP 237
Query: 186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAI 245
+NL V ++ K +AL ++++A+ + P A YS +G + + A+ + A+
Sbjct: 238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLXGNFENAVDYFHTAL 297
Query: 246 QI 247
+
Sbjct: 298 GL 299
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 74/195 (37%), Gaps = 35/195 (17%)
Query: 112 LSPDDGTTFSYIISVLLLIQV------SEAEECYNTALRLCPTHADSLNNLANIKREQGY 165
L+PD+ SYI V L +++ +E E+ L + L A R +
Sbjct: 210 LNPDN----SYI-KVFLALKLQDVHAEAEGEKYIEEILDQISSQPYVLRYAAKFYRRKNS 264
Query: 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQ-------------GK--------LTDAL 204
+A L KALEV P + H + Q GK ++ A+
Sbjct: 265 WNKALELLKKALEVTPTSSFLHHQXGLCYRAQXIQIKKATHNRPKGKDKLKVDELISSAI 324
Query: 205 LHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD 264
H+K A FA AY+++ N E A + +A+++ D H + IH
Sbjct: 325 FHFKAAXERDSXFAFAYTDLANXYAEGGQYSNAEDIFRKALRLE-NITDDHKH--QIHYH 381
Query: 265 SGKRGFFIRTDLNSA 279
G+ F R N+A
Sbjct: 382 YGRFQEFHRKSENTA 396
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 72/179 (40%), Gaps = 27/179 (15%)
Query: 350 LALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGK--YSEKLAFMPDTYFIGDHNQ 407
+A A + SE+ +P + +G + FP ++ GK +S+ + M ++Y
Sbjct: 19 IAGAFRRSEEALALPRDFLLGAYQTEFPEGPTEQLMKGKITFSQWVPLMDESY-RKSSKA 77
Query: 408 MFPHLKERFIVSGKTMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQ 467
+L E F +S + + S+N +LQ +A + T IV +
Sbjct: 78 CGANLPENFSIS--QIFSQAMAARSINRPMLQAAIALKKKGFTTC--------IVTNNWL 127
Query: 468 QYGLPEDAI--VYCNFNQ------------LYKIDPSTLQMWVNVLKAVPNSILWLLKF 512
G D++ + C +Q + K +P ++ LKA PN +++L F
Sbjct: 128 DDGDKRDSLAQMMCELSQHFDFLIESCQVGMIKPEPQIYNFLLDTLKAKPNEVVFLDDF 186
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSR 243
A A +L + +Q A +HY +AI + PS Y+N E + +Q +
Sbjct: 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67
Query: 244 AIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWL 283
A+++ + +A +G F + DL+ A W
Sbjct: 68 AVEVGRETRADYKLIAKAMSRAGN-AFQKQNDLSLAVQWF 106
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%)
Query: 133 SEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 192
+EA + Y A+ L P +N++ G +E+ KALE+ P+ + A AS
Sbjct: 42 NEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101
Query: 193 VLQQQGKLTDALL 205
+ G TDA+
Sbjct: 102 ANESLGNFTDAMF 114
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%)
Query: 133 SEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 192
+EA + Y A+ L P +N++ G +E+ KALE+ P+ + A AS
Sbjct: 38 NEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 97
Query: 193 VLQQQGKLTDALL 205
+ G TDA+
Sbjct: 98 ANESLGNFTDAMF 110
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 34/76 (44%)
Query: 169 ATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL 228
A + Y + ++ PE A +SN A+ L + +A+ +AI P+F AY
Sbjct: 23 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82
Query: 229 KEMQDIQGALQCYSRA 244
+++ AL+ A
Sbjct: 83 IAVKEYASALETLDAA 98
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 202 DALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLAS 260
+A+ Y E I+ P A YSN L ++ A+ ++AI+ +P F A+ A+
Sbjct: 22 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 600 LCNGHTTSMDVL-WTGTPVVTLP--GETLASRVAASQLA--TLGCPELIARTHKEYQDIA 654
+ N T +L W TP T T A VA QL+ + G P+LI RTH +Y D +
Sbjct: 161 MLNHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDY-DYS 219
Query: 655 IR 656
+R
Sbjct: 220 VR 221
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 493
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 26 LANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFG 85
L +AL KG+ + N +A E GQ ++ HKP K R P Y+
Sbjct: 182 LQHALDAKGEREVKEIMIN-QDAFTENGQWSIEHKPSRKNWRSDDPSYEDVTFYLI--IQ 238
Query: 86 NHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIIS 125
P +++ ++ S + I + L PD G S IS
Sbjct: 239 RKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSIS 278
>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From
Mycobacterium Marinum
pdb|3QKA|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From
Mycobacterium Marinum
pdb|3QKA|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From
Mycobacterium Marinum
pdb|3QKA|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From
Mycobacterium Marinum
pdb|3QKA|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From
Mycobacterium Marinum
pdb|3QKA|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From
Mycobacterium Marinum
Length = 261
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 416 FIVSGKTMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSR----QQYGL 471
I++G+ + A + + V+ NG A A +PQ + + R QQ+GL
Sbjct: 162 MILTGRAVQADEALAIGLANRVVPNGQARQAAEELAAQLAALPQQCLRSDRLSALQQWGL 221
Query: 472 PEDAIVYCNFNQLYKIDPSTLQ 493
PE A + F + ++ L+
Sbjct: 222 PESAALDLEFASISRVAAEALE 243
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 139 YNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV-------FPEFAAAHSNLA 191
Y+ A L PT+ + N A + E+G + L KA+EV + + A A++ +
Sbjct: 27 YDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86
Query: 192 SVLQQQGKLTDALLHYKEAI 211
+ ++ K DA+ Y +++
Sbjct: 87 NSYFKEEKYKDAIHFYNKSL 106
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 211 IRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP------GFADAHSNLASIHKD 264
I Q A A N+GNTLK + + A+ C R + I+ G A A NL +++
Sbjct: 80 IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 139
Query: 265 SGK 267
GK
Sbjct: 140 KGK 142
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 139 YNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV-------FPEFAAAHSNLA 191
Y+ A L PT+ + N A + E+G + L KA+EV + + A A++ +
Sbjct: 27 YDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86
Query: 192 SVLQQQGKLTDALLHYKEAI 211
+ ++ K DA+ Y +++
Sbjct: 87 NSYFKEEKYKDAIHFYNKSL 106
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 211 IRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP------GFADAHSNLASIHKD 264
I Q A A N+GNTLK + + A+ C R + I+ G A A NL +++
Sbjct: 76 IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135
Query: 265 SGK 267
GK
Sbjct: 136 KGK 138
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 211 IRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP------GFADAHSNLASIHKD 264
I Q A A N+GNTLK + + A+ C R + I+ G A A NL +++
Sbjct: 78 IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 137
Query: 265 SGK 267
GK
Sbjct: 138 KGK 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,298,408
Number of Sequences: 62578
Number of extensions: 785530
Number of successful extensions: 2348
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2074
Number of HSP's gapped (non-prelim): 245
length of query: 673
length of database: 14,973,337
effective HSP length: 105
effective length of query: 568
effective length of database: 8,402,647
effective search space: 4772703496
effective search space used: 4772703496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)