Query psy17691
Match_columns 673
No_of_seqs 689 out of 4475
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 20:30:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626|consensus 100.0 4.1E-99 9E-104 786.2 38.4 538 1-671 199-915 (966)
2 PF13844 Glyco_transf_41: Glyc 100.0 1.1E-76 2.4E-81 631.6 11.9 322 308-672 78-442 (468)
3 COG3914 Spy Predicted O-linked 100.0 1.2E-68 2.5E-73 561.7 34.6 422 129-672 80-589 (620)
4 KOG4626|consensus 100.0 8.7E-30 1.9E-34 267.6 20.8 254 1-269 131-405 (966)
5 PRK15179 Vi polysaccharide bio 99.9 1.5E-21 3.2E-26 222.0 36.1 144 114-257 83-227 (694)
6 TIGR00990 3a0801s09 mitochondr 99.9 4.2E-21 9.1E-26 220.9 28.7 267 1-269 142-484 (615)
7 PRK15174 Vi polysaccharide exp 99.9 2.2E-19 4.8E-24 206.8 32.2 253 2-269 58-335 (656)
8 PRK15174 Vi polysaccharide exp 99.9 3.5E-19 7.5E-24 205.2 32.7 266 1-281 91-390 (656)
9 TIGR00990 3a0801s09 mitochondr 99.8 6E-19 1.3E-23 203.1 31.4 271 1-286 175-551 (615)
10 KOG1126|consensus 99.8 2.6E-20 5.7E-25 200.1 16.2 256 2-286 335-600 (638)
11 PRK11447 cellulose synthase su 99.8 3.3E-18 7.2E-23 209.6 33.1 273 1-286 284-680 (1157)
12 KOG1126|consensus 99.8 4.1E-19 8.8E-24 191.0 17.7 225 1-269 368-608 (638)
13 TIGR02917 PEP_TPR_lipo putativ 99.8 2.5E-17 5.5E-22 196.8 32.3 269 1-286 582-880 (899)
14 TIGR02917 PEP_TPR_lipo putativ 99.8 4.6E-17 9.9E-22 194.6 33.0 271 1-287 548-847 (899)
15 PRK09782 bacteriophage N4 rece 99.8 3.6E-17 7.9E-22 193.0 29.4 245 4-284 459-718 (987)
16 PRK12370 invasion protein regu 99.8 4.8E-17 1E-21 184.4 26.7 212 2-267 277-490 (553)
17 PRK11788 tetratricopeptide rep 99.8 1.1E-16 2.3E-21 174.1 28.2 252 1-280 50-319 (389)
18 PRK11447 cellulose synthase su 99.8 9.1E-17 2E-21 197.0 30.8 186 101-286 285-538 (1157)
19 PRK09782 bacteriophage N4 rece 99.8 1.2E-16 2.6E-21 188.7 28.0 223 1-269 491-728 (987)
20 KOG0547|consensus 99.8 3E-17 6.5E-22 170.1 19.3 275 1-275 130-494 (606)
21 KOG1155|consensus 99.8 1.1E-16 2.5E-21 165.0 22.3 268 2-269 180-483 (559)
22 PRK10049 pgaA outer membrane p 99.7 9.8E-16 2.1E-20 180.1 31.0 283 1-285 64-435 (765)
23 KOG1125|consensus 99.7 2.9E-16 6.3E-21 166.7 18.1 232 2-269 301-559 (579)
24 KOG1173|consensus 99.7 2E-15 4.2E-20 159.7 23.2 239 1-283 259-529 (611)
25 PRK10049 pgaA outer membrane p 99.7 6.1E-15 1.3E-19 173.4 29.8 278 1-282 98-466 (765)
26 KOG1155|consensus 99.7 1.5E-15 3.4E-20 156.7 21.1 237 2-269 278-524 (559)
27 COG3063 PilF Tfp pilus assembl 99.7 1.1E-15 2.4E-20 145.7 17.5 149 121-269 40-190 (250)
28 TIGR02521 type_IV_pilW type IV 99.7 6.7E-15 1.5E-19 146.3 24.0 156 114-269 62-220 (234)
29 KOG0547|consensus 99.7 2.9E-15 6.3E-20 155.5 21.7 177 109-285 352-545 (606)
30 PRK15359 type III secretion sy 99.7 1.5E-15 3.2E-20 141.0 15.6 127 136-265 13-139 (144)
31 PF13429 TPR_15: Tetratricopep 99.7 1E-15 2.2E-20 158.8 14.3 237 1-269 23-265 (280)
32 PRK11189 lipoprotein NlpI; Pro 99.7 2.9E-14 6.2E-19 148.9 24.9 155 111-269 92-253 (296)
33 PRK12370 invasion protein regu 99.7 1.1E-14 2.3E-19 165.3 23.5 167 103-269 279-458 (553)
34 KOG1173|consensus 99.7 8.7E-15 1.9E-19 154.8 20.8 210 11-264 303-535 (611)
35 PRK11788 tetratricopeptide rep 99.6 7.4E-14 1.6E-18 151.8 28.6 139 123-262 187-326 (389)
36 KOG0624|consensus 99.6 2.2E-14 4.7E-19 143.0 21.3 281 1-284 53-382 (504)
37 PLN02789 farnesyltranstransfer 99.6 3.6E-14 7.8E-19 148.3 22.9 132 133-264 125-267 (320)
38 COG3063 PilF Tfp pilus assembl 99.6 2.9E-14 6.3E-19 136.0 20.0 159 111-269 63-224 (250)
39 TIGR02521 type_IV_pilW type IV 99.6 9E-14 1.9E-18 138.2 22.8 164 121-284 36-210 (234)
40 KOG2002|consensus 99.6 9.4E-13 2E-17 147.1 27.8 232 37-284 305-571 (1018)
41 PLN02789 farnesyltranstransfer 99.6 9.9E-14 2.1E-18 145.1 18.9 175 112-286 32-226 (320)
42 KOG1129|consensus 99.6 2.2E-14 4.8E-19 142.2 12.7 141 129-269 303-446 (478)
43 KOG1129|consensus 99.6 6.7E-14 1.5E-18 138.8 15.1 171 119-289 259-441 (478)
44 PRK10370 formate-dependent nit 99.6 1.9E-13 4.2E-18 133.6 18.2 125 129-253 52-179 (198)
45 KOG2002|consensus 99.6 8.1E-13 1.8E-17 147.6 24.9 258 2-287 146-424 (1018)
46 KOG1125|consensus 99.5 6.6E-14 1.4E-18 148.9 15.5 161 109-269 311-515 (579)
47 KOG0550|consensus 99.5 9.7E-14 2.1E-18 141.9 15.4 238 1-250 64-353 (486)
48 KOG2076|consensus 99.5 1.3E-12 2.8E-17 145.2 25.0 254 1-269 154-500 (895)
49 PRK15359 type III secretion sy 99.5 2.1E-13 4.6E-18 126.5 16.1 122 108-231 18-139 (144)
50 PF13429 TPR_15: Tetratricopep 99.5 4.1E-14 8.9E-19 146.8 12.1 214 1-247 59-277 (280)
51 PRK11189 lipoprotein NlpI; Pro 99.5 6.9E-13 1.5E-17 138.5 20.9 168 117-288 64-247 (296)
52 KOG0548|consensus 99.5 5.3E-13 1.1E-17 141.1 18.5 287 1-289 17-438 (539)
53 TIGR02552 LcrH_SycD type III s 99.5 1.4E-12 2.9E-17 119.6 16.3 120 137-256 4-123 (135)
54 KOG1174|consensus 99.5 9.7E-12 2.1E-16 127.1 22.5 182 107-289 324-517 (564)
55 COG2956 Predicted N-acetylgluc 99.5 1.1E-11 2.5E-16 123.3 22.1 203 2-250 51-281 (389)
56 KOG0553|consensus 99.5 8.7E-13 1.9E-17 130.9 14.0 120 150-269 81-200 (304)
57 TIGR03302 OM_YfiO outer membra 99.5 4E-12 8.7E-17 128.3 19.4 154 116-269 32-220 (235)
58 KOG4162|consensus 99.4 1.1E-11 2.4E-16 135.7 23.1 250 2-252 460-788 (799)
59 PRK10370 formate-dependent nit 99.4 4.1E-12 8.9E-17 124.3 18.1 91 129-219 86-179 (198)
60 TIGR03302 OM_YfiO outer membra 99.4 7E-12 1.5E-16 126.5 20.0 129 121-249 75-234 (235)
61 KOG0548|consensus 99.4 5.3E-12 1.1E-16 133.6 18.7 235 1-265 239-473 (539)
62 KOG1840|consensus 99.4 1.7E-11 3.7E-16 133.9 21.8 211 1-269 214-467 (508)
63 KOG2003|consensus 99.4 1E-11 2.3E-16 127.7 18.5 155 130-284 470-633 (840)
64 COG5010 TadD Flp pilus assembl 99.4 1.7E-11 3.8E-16 119.7 18.0 161 109-269 59-219 (257)
65 KOG2003|consensus 99.4 3.4E-11 7.5E-16 124.0 20.4 224 2-269 472-711 (840)
66 PRK15363 pathogenicity island 99.4 1.3E-11 2.7E-16 113.2 15.5 109 140-248 24-133 (157)
67 TIGR00540 hemY_coli hemY prote 99.4 1.9E-10 4.2E-15 125.9 27.9 253 1-269 99-387 (409)
68 TIGR00540 hemY_coli hemY prote 99.4 3.5E-11 7.6E-16 131.7 21.9 235 1-247 133-399 (409)
69 PRK14574 hmsH outer membrane p 99.4 1.2E-10 2.6E-15 135.6 27.5 156 124-279 335-520 (822)
70 PRK10747 putative protoheme IX 99.4 5.2E-11 1.1E-15 129.8 22.7 235 1-248 133-391 (398)
71 KOG0553|consensus 99.4 5.8E-12 1.2E-16 125.2 13.5 115 121-235 86-200 (304)
72 KOG0495|consensus 99.4 2.3E-10 5.1E-15 122.9 26.0 243 2-257 532-792 (913)
73 COG5010 TadD Flp pilus assembl 99.4 1E-10 2.2E-15 114.3 20.8 124 121-244 105-228 (257)
74 PRK15179 Vi polysaccharide bio 99.3 3E-11 6.5E-16 138.1 19.5 139 131-269 67-205 (694)
75 cd05804 StaR_like StaR_like; a 99.3 1.3E-10 2.8E-15 124.7 21.7 147 122-269 49-203 (355)
76 KOG1840|consensus 99.3 1.5E-10 3.3E-15 126.5 22.1 192 1-247 256-479 (508)
77 TIGR02552 LcrH_SycD type III s 99.3 5.7E-11 1.2E-15 108.8 16.0 111 111-221 11-122 (135)
78 KOG4162|consensus 99.3 4.8E-10 1E-14 123.2 24.7 282 1-285 338-762 (799)
79 KOG0624|consensus 99.3 1.6E-10 3.4E-15 115.8 18.1 173 109-281 64-261 (504)
80 KOG1174|consensus 99.3 6.4E-10 1.4E-14 114.0 22.0 162 108-269 291-455 (564)
81 PRK14574 hmsH outer membrane p 99.3 3.2E-10 7E-15 132.1 22.1 198 8-269 22-220 (822)
82 KOG0495|consensus 99.3 2E-09 4.3E-14 116.0 25.7 265 3-280 567-888 (913)
83 PRK15427 colanic acid biosynth 99.3 7.5E-11 1.6E-15 128.9 15.4 150 474-671 221-382 (406)
84 PLN03088 SGT1, suppressor of 99.2 1.4E-10 3.1E-15 124.0 16.9 113 153-265 5-117 (356)
85 cd03818 GT1_ExpC_like This fam 99.2 9.2E-11 2E-15 128.0 15.3 189 437-671 181-377 (396)
86 PRK10747 putative protoheme IX 99.2 3.4E-09 7.3E-14 115.6 27.4 122 144-269 257-378 (398)
87 TIGR03449 mycothiol_MshA UDP-N 99.2 1.1E-10 2.4E-15 127.6 15.6 163 464-670 208-378 (405)
88 KOG3060|consensus 99.2 1E-09 2.2E-14 106.3 19.6 161 124-284 60-232 (289)
89 PRK14720 transcript cleavage f 99.2 4.5E-10 9.7E-15 129.5 20.2 200 1-263 46-268 (906)
90 KOG3060|consensus 99.2 9.6E-09 2.1E-13 99.7 26.0 150 114-263 83-236 (289)
91 KOG0550|consensus 99.2 4.4E-11 9.5E-16 122.7 10.5 233 36-269 80-338 (486)
92 PLN03088 SGT1, suppressor of 99.2 3E-10 6.5E-15 121.5 17.0 112 120-231 6-117 (356)
93 PRK15363 pathogenicity island 99.2 4.9E-10 1.1E-14 102.8 15.0 99 117-215 36-134 (157)
94 cd03821 GT1_Bme6_like This fam 99.2 2.5E-10 5.5E-15 121.6 15.2 160 466-671 194-356 (375)
95 COG2956 Predicted N-acetylgluc 99.2 1.6E-09 3.6E-14 108.2 18.6 197 34-269 64-266 (389)
96 KOG2076|consensus 99.2 1.3E-09 2.8E-14 121.7 19.0 131 119-249 142-272 (895)
97 cd03805 GT1_ALG2_like This fam 99.2 4.4E-10 9.6E-15 122.1 15.2 165 467-671 203-375 (392)
98 cd05804 StaR_like StaR_like; a 99.1 6.1E-09 1.3E-13 111.8 21.6 207 15-249 1-217 (355)
99 cd03817 GT1_UGDG_like This fam 99.1 4E-10 8.7E-15 120.2 12.3 158 466-671 193-354 (374)
100 CHL00033 ycf3 photosystem I as 99.1 2.3E-09 5.1E-14 102.2 16.3 135 131-268 14-167 (168)
101 COG4783 Putative Zn-dependent 99.1 4.2E-09 9.1E-14 111.1 19.4 133 125-257 315-447 (484)
102 cd03812 GT1_CapH_like This fam 99.1 4.1E-10 9E-15 120.4 12.2 155 466-670 183-341 (358)
103 TIGR02795 tol_pal_ybgF tol-pal 99.1 2.2E-09 4.8E-14 95.4 14.8 107 150-256 2-114 (119)
104 cd04962 GT1_like_5 This family 99.1 9.1E-10 2E-14 118.5 14.3 156 465-671 187-347 (371)
105 KOG1156|consensus 99.1 5.1E-09 1.1E-13 113.2 19.5 199 1-262 22-263 (700)
106 PRK02603 photosystem I assembl 99.1 1.9E-09 4.2E-14 103.2 14.9 117 149-268 34-167 (172)
107 cd05844 GT1_like_7 Glycosyltra 99.1 1.5E-09 3.3E-14 116.7 15.5 140 483-670 198-346 (367)
108 PF00534 Glycos_transf_1: Glyc 99.1 3.6E-10 7.8E-15 108.0 9.4 160 465-672 5-170 (172)
109 TIGR03088 stp2 sugar transfera 99.1 1.2E-09 2.5E-14 118.2 14.2 152 469-670 188-348 (374)
110 cd03796 GT1_PIG-A_like This fa 99.1 1.2E-09 2.6E-14 119.4 14.0 144 473-664 191-337 (398)
111 cd00189 TPR Tetratricopeptide 99.1 2E-09 4.3E-14 89.8 12.0 99 152-250 2-100 (100)
112 PRK15484 lipopolysaccharide 1, 99.1 1.8E-09 3.9E-14 117.2 14.4 163 465-669 183-352 (380)
113 cd03792 GT1_Trehalose_phosphor 99.1 1.6E-09 3.4E-14 117.2 13.9 163 464-670 179-347 (372)
114 PRK10307 putative glycosyl tra 99.0 2.4E-09 5.2E-14 117.5 15.2 158 464-671 218-384 (412)
115 PRK15490 Vi polysaccharide bio 99.0 1.6E-09 3.5E-14 118.9 12.8 110 469-622 392-504 (578)
116 cd03816 GT1_ALG1_like This fam 99.0 3.2E-09 6.8E-14 116.6 15.2 151 473-671 230-395 (415)
117 COG4235 Cytochrome c biogenesi 99.0 7.5E-09 1.6E-13 103.9 16.2 123 131-253 137-262 (287)
118 PF13414 TPR_11: TPR repeat; P 99.0 1.3E-09 2.8E-14 87.3 8.6 67 183-249 2-69 (69)
119 PLN02501 digalactosyldiacylgly 99.0 1.3E-09 2.7E-14 121.1 10.6 147 467-666 538-687 (794)
120 cd03813 GT1_like_3 This family 99.0 3.2E-09 7E-14 118.6 13.9 153 472-670 290-452 (475)
121 PRK10153 DNA-binding transcrip 99.0 1E-08 2.2E-13 114.2 17.7 140 113-253 333-488 (517)
122 COG4783 Putative Zn-dependent 99.0 2.7E-08 5.8E-13 105.1 19.4 124 146-269 302-425 (484)
123 PF09976 TPR_21: Tetratricopep 99.0 2.1E-08 4.6E-13 93.2 16.6 125 120-245 15-145 (145)
124 KOG1127|consensus 99.0 6.8E-09 1.5E-13 116.5 14.9 197 3-262 475-674 (1238)
125 PF13414 TPR_11: TPR repeat; P 99.0 2.4E-09 5.2E-14 85.8 8.5 68 148-215 1-69 (69)
126 KOG1156|consensus 99.0 5.4E-09 1.2E-13 113.0 13.6 156 114-269 5-160 (700)
127 PLN02949 transferase, transfer 99.0 2.9E-09 6.3E-14 117.7 11.9 155 476-670 269-433 (463)
128 PRK14720 transcript cleavage f 99.0 1.9E-08 4.2E-13 116.2 18.8 133 112-247 26-178 (906)
129 KOG1130|consensus 99.0 2.4E-09 5.2E-14 109.7 9.7 268 2-269 33-372 (639)
130 KOG1127|consensus 98.9 9E-09 2E-13 115.6 14.5 161 109-269 484-647 (1238)
131 cd03806 GT1_ALG11_like This fa 98.9 7E-09 1.5E-13 113.9 13.6 152 475-667 237-400 (419)
132 PLN03218 maturation of RBCL 1; 98.9 6.3E-07 1.4E-11 107.7 31.1 252 1-269 452-736 (1060)
133 KOG1128|consensus 98.9 1.1E-08 2.4E-13 112.0 14.5 133 137-269 471-604 (777)
134 TIGR02795 tol_pal_ybgF tol-pal 98.9 3.1E-08 6.6E-13 88.0 14.9 103 120-222 6-114 (119)
135 PLN02871 UDP-sulfoquinovose:DA 98.9 1E-08 2.2E-13 114.4 14.2 145 472-671 260-411 (465)
136 CHL00033 ycf3 photosystem I as 98.9 2.2E-08 4.8E-13 95.5 14.6 100 119-218 37-154 (168)
137 cd03800 GT1_Sucrose_synthase T 98.9 1.3E-08 2.9E-13 110.4 14.7 163 466-670 211-378 (398)
138 cd03801 GT1_YqgM_like This fam 98.9 1.1E-08 2.5E-13 108.1 13.8 156 468-671 192-352 (374)
139 PLN02939 transferase, transfer 98.9 1.2E-08 2.6E-13 117.7 14.8 189 437-670 729-945 (977)
140 KOG1130|consensus 98.9 1.8E-08 4E-13 103.3 14.3 125 122-246 241-383 (639)
141 cd03799 GT1_amsK_like This is 98.9 1.2E-08 2.7E-13 108.7 13.9 149 475-671 179-338 (355)
142 cd04949 GT1_gtfA_like This fam 98.9 7E-09 1.5E-13 112.0 11.9 146 477-671 206-356 (372)
143 PLN03081 pentatricopeptide (PP 98.9 2.1E-07 4.5E-12 109.2 25.1 265 3-284 241-535 (697)
144 PF13525 YfiO: Outer membrane 98.9 1.5E-07 3.3E-12 92.6 19.8 151 118-268 7-194 (203)
145 PRK10866 outer membrane biogen 98.9 2.5E-07 5.5E-12 93.4 21.6 152 118-269 34-229 (243)
146 PLN02846 digalactosyldiacylgly 98.9 1.4E-08 3E-13 111.0 12.8 131 477-660 230-363 (462)
147 TIGR02918 accessory Sec system 98.9 1.8E-08 4E-13 112.4 13.9 144 476-671 320-477 (500)
148 KOG0543|consensus 98.9 3.4E-08 7.5E-13 102.5 14.7 115 153-267 211-340 (397)
149 cd03820 GT1_amsD_like This fam 98.9 1.6E-08 3.5E-13 106.3 12.8 148 475-671 178-330 (348)
150 PRK11906 transcriptional regul 98.9 8.6E-08 1.9E-12 101.9 17.9 116 131-246 319-435 (458)
151 cd00189 TPR Tetratricopeptide 98.9 3E-08 6.5E-13 82.5 11.8 96 121-216 5-100 (100)
152 PLN03218 maturation of RBCL 1; 98.9 1.3E-06 2.7E-11 105.1 29.8 248 2-269 422-701 (1060)
153 PF12895 Apc3: Anaphase-promot 98.9 6.3E-09 1.4E-13 87.0 7.2 81 163-244 2-84 (84)
154 PRK15331 chaperone protein Sic 98.9 3.7E-08 8.1E-13 90.8 12.7 113 141-254 28-140 (165)
155 PRK02603 photosystem I assembl 98.9 6.5E-08 1.4E-12 92.6 15.1 115 116-233 34-166 (172)
156 cd03807 GT1_WbnK_like This fam 98.9 2.3E-08 5.1E-13 106.0 13.3 154 465-670 183-342 (365)
157 cd03819 GT1_WavL_like This fam 98.8 2.6E-08 5.7E-13 106.3 13.6 161 465-671 175-342 (355)
158 COG4235 Cytochrome c biogenesi 98.8 9.1E-08 2E-12 96.2 16.2 110 109-218 148-261 (287)
159 cd03794 GT1_wbuB_like This fam 98.8 2.8E-08 6.2E-13 106.3 13.8 155 468-671 213-376 (394)
160 PF13432 TPR_16: Tetratricopep 98.8 1E-08 2.2E-13 81.1 7.5 62 190-251 3-64 (65)
161 cd04946 GT1_AmsK_like This fam 98.8 3.5E-08 7.7E-13 108.0 14.4 150 474-671 229-388 (407)
162 TIGR03087 stp1 sugar transfera 98.8 2E-08 4.3E-13 109.7 12.3 142 474-670 223-372 (397)
163 PF13432 TPR_16: Tetratricopep 98.8 1.4E-08 3E-13 80.3 8.0 65 154-218 1-65 (65)
164 cd03822 GT1_ecORF704_like This 98.8 2.5E-08 5.5E-13 106.4 12.7 154 470-671 180-345 (366)
165 KOG1128|consensus 98.8 3.5E-08 7.7E-13 108.2 13.5 119 129-247 498-616 (777)
166 PRK05749 3-deoxy-D-manno-octul 98.8 3.7E-08 8.1E-13 108.5 14.1 160 465-671 225-399 (425)
167 TIGR02149 glgA_Coryne glycogen 98.8 4.7E-08 1E-12 106.1 14.4 161 464-670 190-362 (388)
168 PF13692 Glyco_trans_1_4: Glyc 98.8 3.3E-09 7.1E-14 97.0 4.5 129 475-660 2-135 (135)
169 PF12895 Apc3: Anaphase-promot 98.8 1.2E-08 2.6E-13 85.3 7.5 81 129-210 2-84 (84)
170 PF12569 NARP1: NMDA receptor- 98.8 6.7E-07 1.4E-11 99.3 23.2 85 185-269 195-279 (517)
171 cd04951 GT1_WbdM_like This fam 98.8 3.3E-08 7E-13 105.7 12.6 155 464-668 177-335 (360)
172 KOG0543|consensus 98.8 9E-08 1.9E-12 99.4 15.0 129 121-249 213-357 (397)
173 PRK11906 transcriptional regul 98.8 1.2E-07 2.7E-12 100.8 16.3 124 131-254 273-408 (458)
174 cd03795 GT1_like_4 This family 98.8 4.9E-08 1.1E-12 104.2 13.6 150 471-671 187-343 (357)
175 PLN03081 pentatricopeptide (PP 98.8 3.8E-07 8.3E-12 107.0 21.9 248 1-269 274-545 (697)
176 PRK10803 tol-pal system protei 98.8 2.3E-07 4.9E-12 94.5 17.2 106 150-255 142-254 (263)
177 cd03814 GT1_like_2 This family 98.8 4.1E-08 9E-13 104.5 12.1 149 467-671 190-343 (364)
178 PF04733 Coatomer_E: Coatomer 98.8 3.7E-08 8E-13 102.0 11.0 148 127-279 113-272 (290)
179 PLN02316 synthase/transferase 98.8 6.1E-08 1.3E-12 113.9 13.9 119 464-622 828-952 (1036)
180 TIGR02472 sucr_P_syn_N sucrose 98.8 5.9E-08 1.3E-12 107.4 13.1 165 468-670 241-416 (439)
181 PRK10153 DNA-binding transcrip 98.8 1.8E-07 3.8E-12 104.4 16.7 87 132-219 400-488 (517)
182 PLN03077 Protein ECB2; Provisi 98.8 1.2E-06 2.6E-11 105.3 25.0 157 121-284 529-698 (857)
183 PLN03077 Protein ECB2; Provisi 98.7 1.4E-06 3.1E-11 104.7 25.5 246 1-269 439-708 (857)
184 TIGR02468 sucrsPsyn_pln sucros 98.7 9.2E-08 2E-12 112.2 14.5 164 469-670 473-647 (1050)
185 PHA01633 putative glycosyl tra 98.7 3.9E-08 8.5E-13 103.4 10.4 109 465-623 137-256 (335)
186 PRK10803 tol-pal system protei 98.7 3.4E-07 7.3E-12 93.3 16.8 104 117-220 143-253 (263)
187 cd03825 GT1_wcfI_like This fam 98.7 7.2E-08 1.6E-12 103.2 12.7 152 465-671 181-341 (365)
188 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 3.1E-07 6.8E-12 98.2 17.1 113 128-243 181-293 (395)
189 KOG2376|consensus 98.7 4.9E-07 1.1E-11 97.3 18.1 128 121-252 115-258 (652)
190 PRK14098 glycogen synthase; Pr 98.7 1.3E-07 2.8E-12 105.7 14.6 157 464-669 294-463 (489)
191 PF14938 SNAP: Soluble NSF att 98.7 5.1E-07 1.1E-11 93.7 17.6 134 118-251 76-229 (282)
192 PRK09922 UDP-D-galactose:(gluc 98.7 8.3E-08 1.8E-12 103.3 11.8 138 475-663 180-327 (359)
193 cd03809 GT1_mtfB_like This fam 98.7 8.1E-08 1.8E-12 102.4 11.4 155 470-671 190-347 (365)
194 TIGR02470 sucr_synth sucrose s 98.7 2E-07 4.4E-12 107.1 15.1 168 466-670 539-723 (784)
195 cd03798 GT1_wlbH_like This fam 98.7 2.3E-07 5E-12 98.4 14.2 146 470-663 197-347 (377)
196 KOG4234|consensus 98.7 2.3E-07 4.9E-12 87.0 12.0 108 153-260 98-210 (271)
197 COG3071 HemY Uncharacterized e 98.7 7.4E-06 1.6E-10 84.8 24.1 156 110-269 180-378 (400)
198 cd03811 GT1_WabH_like This fam 98.7 2.1E-07 4.4E-12 98.0 13.4 151 469-669 183-341 (353)
199 cd03823 GT1_ExpE7_like This fa 98.7 2.3E-07 5E-12 98.4 13.7 148 471-671 187-340 (359)
200 cd03808 GT1_cap1E_like This fa 98.7 1.8E-07 3.8E-12 98.9 12.6 148 473-670 186-339 (359)
201 PF12569 NARP1: NMDA receptor- 98.7 6E-06 1.3E-10 91.8 24.7 119 151-269 195-322 (517)
202 TIGR02095 glgA glycogen/starch 98.6 2.2E-07 4.7E-12 104.0 13.2 158 464-670 278-451 (473)
203 PRK14099 glycogen synthase; Pr 98.6 3.6E-07 7.9E-12 102.0 14.7 160 464-670 282-457 (485)
204 PLN02605 monogalactosyldiacylg 98.6 2.8E-07 6.1E-12 100.1 13.2 157 464-671 195-359 (382)
205 PRK10866 outer membrane biogen 98.6 4.9E-06 1.1E-10 84.1 21.1 124 120-243 73-237 (243)
206 PF04733 Coatomer_E: Coatomer 98.6 3.3E-07 7.1E-12 95.0 12.8 133 122-254 137-272 (290)
207 PF12688 TPR_5: Tetratrico pep 98.6 8.6E-07 1.9E-11 78.8 13.4 96 151-246 2-103 (120)
208 PLN02275 transferase, transfer 98.6 4.3E-07 9.2E-12 98.3 13.6 133 476-657 214-370 (371)
209 COG3071 HemY Uncharacterized e 98.6 7.1E-06 1.5E-10 84.9 21.5 125 119-247 266-390 (400)
210 cd04955 GT1_like_6 This family 98.6 2E-07 4.3E-12 99.8 10.8 150 467-670 186-340 (363)
211 PRK15331 chaperone protein Sic 98.6 8.3E-07 1.8E-11 82.0 13.1 100 118-218 39-138 (165)
212 PRK00654 glgA glycogen synthas 98.6 6.3E-07 1.4E-11 100.0 14.5 157 464-670 270-441 (466)
213 PRK13609 diacylglycerol glucos 98.6 7.4E-07 1.6E-11 96.7 14.4 107 556-671 243-349 (380)
214 KOG1111|consensus 98.6 2E-07 4.3E-12 94.8 9.0 102 476-619 196-300 (426)
215 PLN00142 sucrose synthase 98.6 7.6E-07 1.6E-11 102.5 14.7 167 467-670 563-746 (815)
216 PRK13608 diacylglycerol glucos 98.5 8.4E-07 1.8E-11 96.7 13.7 94 572-671 256-349 (391)
217 KOG4648|consensus 98.5 3.2E-07 6.9E-12 92.4 9.3 109 153-261 100-208 (536)
218 PF13371 TPR_9: Tetratricopept 98.5 4.8E-07 1E-11 73.1 8.9 67 191-257 2-68 (73)
219 PF14559 TPR_19: Tetratricopep 98.5 2.7E-07 5.8E-12 73.5 7.2 65 195-259 2-66 (68)
220 KOG3785|consensus 98.5 1E-05 2.2E-10 82.2 19.8 244 2-268 38-332 (557)
221 PF14559 TPR_19: Tetratricopep 98.5 3E-07 6.6E-12 73.2 7.3 64 128-191 3-66 (68)
222 COG4700 Uncharacterized protei 98.5 9E-06 1.9E-10 75.7 17.6 134 111-245 84-220 (251)
223 PF12688 TPR_5: Tetratrico pep 98.5 3E-06 6.4E-11 75.4 14.1 93 120-212 5-103 (120)
224 cd03804 GT1_wbaZ_like This fam 98.5 4.7E-07 1E-11 97.0 10.8 97 568-671 239-338 (351)
225 KOG4340|consensus 98.5 2.3E-06 5.1E-11 84.9 14.3 63 183-245 143-205 (459)
226 PF13371 TPR_9: Tetratricopept 98.5 7.2E-07 1.6E-11 72.1 8.8 69 157-225 2-70 (73)
227 PRK00025 lpxB lipid-A-disaccha 98.5 7.5E-07 1.6E-11 96.6 11.7 157 464-671 175-352 (380)
228 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 5.6E-07 1.2E-11 95.7 10.1 69 145-213 70-141 (453)
229 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 7.2E-07 1.6E-11 94.9 10.7 69 179-247 70-141 (453)
230 PF09976 TPR_21: Tetratricopep 98.5 4.4E-06 9.4E-11 77.6 14.7 90 121-211 53-145 (145)
231 PHA01630 putative group 1 glyc 98.5 1.2E-06 2.5E-11 93.0 12.0 143 475-668 142-305 (331)
232 PF13525 YfiO: Outer membrane 98.5 1.5E-05 3.2E-10 78.5 19.0 119 121-239 47-199 (203)
233 cd03785 GT1_MurG MurG is an N- 98.4 1.6E-06 3.6E-11 92.7 13.0 107 557-671 223-335 (350)
234 COG1729 Uncharacterized protei 98.4 3.4E-06 7.3E-11 84.1 14.0 103 153-255 144-252 (262)
235 cd03802 GT1_AviGT4_like This f 98.4 2.5E-06 5.3E-11 90.3 14.2 96 559-661 211-309 (335)
236 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 3.3E-06 7.2E-11 90.4 14.9 112 155-269 174-285 (395)
237 COG4785 NlpI Lipoprotein NlpI, 98.4 2.9E-06 6.3E-11 80.7 12.7 99 120-218 68-167 (297)
238 KOG4340|consensus 98.4 2.8E-06 6.1E-11 84.3 12.4 144 126-269 20-195 (459)
239 KOG4234|consensus 98.4 3.8E-06 8.2E-11 79.0 12.4 107 121-227 100-211 (271)
240 COG1729 Uncharacterized protei 98.4 4.7E-06 1E-10 83.1 14.0 104 119-222 144-253 (262)
241 PF14938 SNAP: Soluble NSF att 98.4 3.5E-06 7.5E-11 87.5 13.6 151 118-269 36-213 (282)
242 TIGR00215 lpxB lipid-A-disacch 98.4 1.9E-06 4E-11 93.6 11.7 159 464-671 180-362 (385)
243 cd03791 GT1_Glycogen_synthase_ 98.4 2.3E-06 5E-11 95.8 12.5 157 464-670 283-455 (476)
244 KOG4648|consensus 98.4 1.2E-06 2.5E-11 88.5 8.7 108 119-226 100-207 (536)
245 PF06552 TOM20_plant: Plant sp 98.4 3.7E-06 7.9E-11 78.5 11.2 106 132-261 7-123 (186)
246 PF13512 TPR_18: Tetratricopep 98.4 1.1E-05 2.4E-10 73.1 13.9 104 151-254 11-135 (142)
247 cd03788 GT1_TPS Trehalose-6-Ph 98.4 1.2E-06 2.7E-11 97.2 9.4 154 469-667 258-435 (460)
248 KOG3785|consensus 98.3 1.1E-05 2.4E-10 81.8 15.0 145 120-264 61-231 (557)
249 PF13424 TPR_12: Tetratricopep 98.3 6.1E-07 1.3E-11 73.6 4.9 64 184-247 5-75 (78)
250 TIGR01133 murG undecaprenyldip 98.3 4.2E-06 9.1E-11 89.4 12.3 106 558-671 222-332 (348)
251 COG0457 NrfG FOG: TPR repeat [ 98.3 0.00022 4.8E-09 68.8 23.4 126 125-250 139-268 (291)
252 PRK00726 murG undecaprenyldiph 98.3 5.9E-06 1.3E-10 88.8 12.9 106 558-672 225-336 (357)
253 cd03786 GT1_UDP-GlcNAc_2-Epime 98.3 3.2E-06 6.9E-11 91.0 10.8 151 466-668 190-345 (363)
254 KOG4555|consensus 98.3 3.2E-05 7E-10 67.9 14.5 94 156-249 49-146 (175)
255 KOG3081|consensus 98.3 0.00024 5.2E-09 70.2 22.1 138 124-268 116-257 (299)
256 cd04950 GT1_like_1 Glycosyltra 98.3 4.1E-06 8.9E-11 90.7 11.0 130 474-660 204-341 (373)
257 PF13512 TPR_18: Tetratricopep 98.3 2.6E-05 5.6E-10 70.7 14.2 104 117-220 11-135 (142)
258 TIGR00236 wecB UDP-N-acetylglu 98.3 9.8E-06 2.1E-10 87.4 13.8 151 465-670 189-344 (365)
259 COG4700 Uncharacterized protei 98.3 8.1E-05 1.8E-09 69.5 17.4 140 128-269 68-210 (251)
260 PF06552 TOM20_plant: Plant sp 98.3 9E-06 1.9E-10 75.9 11.3 56 109-164 17-83 (186)
261 COG0457 NrfG FOG: TPR repeat [ 98.3 0.00053 1.1E-08 66.2 24.5 155 114-268 92-252 (291)
262 PF13424 TPR_12: Tetratricopep 98.2 1.3E-06 2.8E-11 71.7 4.8 67 147-213 2-75 (78)
263 PRK04841 transcriptional regul 98.2 0.00011 2.4E-09 89.1 22.6 143 126-268 583-747 (903)
264 KOG1586|consensus 98.2 0.00026 5.5E-09 68.5 19.8 140 116-255 73-232 (288)
265 KOG4555|consensus 98.2 6.9E-05 1.5E-09 65.8 13.7 95 123-217 50-148 (175)
266 KOG1915|consensus 98.1 0.0002 4.4E-09 75.5 19.2 130 129-260 417-548 (677)
267 COG4105 ComL DNA uptake lipopr 98.1 0.00066 1.4E-08 67.3 21.1 151 119-269 37-221 (254)
268 KOG1915|consensus 98.1 0.00067 1.5E-08 71.8 22.0 159 110-269 315-488 (677)
269 KOG2796|consensus 98.1 7.9E-05 1.7E-09 73.1 13.5 141 121-261 182-332 (366)
270 TIGR02400 trehalose_OtsA alpha 98.0 5.4E-05 1.2E-09 83.7 13.7 153 465-666 252-429 (456)
271 COG4785 NlpI Lipoprotein NlpI, 98.0 1.7E-05 3.7E-10 75.6 7.8 105 149-253 64-168 (297)
272 KOG4642|consensus 98.0 1.4E-05 3E-10 77.4 7.0 91 157-247 17-107 (284)
273 cd01635 Glycosyltransferase_GT 98.0 3.4E-05 7.3E-10 76.1 10.2 107 477-626 109-217 (229)
274 KOG1070|consensus 98.0 0.00022 4.8E-09 83.8 17.5 127 122-248 1536-1664(1710)
275 KOG2376|consensus 98.0 0.00016 3.4E-09 78.4 14.7 126 118-247 14-139 (652)
276 PRK04841 transcriptional regul 97.9 0.00059 1.3E-08 82.8 21.6 127 123-249 498-643 (903)
277 KOG0545|consensus 97.9 0.00011 2.4E-09 71.3 11.4 106 150-255 178-301 (329)
278 PF13428 TPR_14: Tetratricopep 97.9 3.4E-05 7.5E-10 55.6 5.4 42 219-260 2-43 (44)
279 KOG3081|consensus 97.8 0.0034 7.3E-08 62.3 20.6 128 124-253 145-277 (299)
280 KOG1941|consensus 97.8 0.00038 8.3E-09 71.3 14.4 127 122-248 128-276 (518)
281 KOG4642|consensus 97.8 0.00012 2.6E-09 71.0 10.2 91 123-213 17-107 (284)
282 KOG1941|consensus 97.8 0.00041 8.9E-09 71.0 14.0 142 128-269 95-263 (518)
283 PF13428 TPR_14: Tetratricopep 97.8 5.5E-05 1.2E-09 54.5 5.3 40 152-191 3-42 (44)
284 TIGR03713 acc_sec_asp1 accesso 97.7 0.00014 3E-09 81.6 10.5 140 484-671 331-499 (519)
285 PF13431 TPR_17: Tetratricopep 97.7 3.2E-05 6.9E-10 52.3 3.4 32 207-238 2-33 (34)
286 PRK10125 putative glycosyl tra 97.7 8.4E-05 1.8E-09 81.2 8.4 51 572-622 286-338 (405)
287 KOG0376|consensus 97.7 5.3E-05 1.1E-09 80.6 6.4 104 124-227 12-115 (476)
288 KOG2471|consensus 97.7 0.00023 5E-09 75.3 10.9 145 121-265 211-382 (696)
289 TIGR01426 MGT glycosyltransfer 97.7 0.00055 1.2E-08 74.6 14.0 141 474-669 225-368 (392)
290 KOG1070|consensus 97.7 0.0018 3.8E-08 76.6 18.3 159 110-269 1451-1617(1710)
291 PF05843 Suf: Suppressor of fo 97.7 0.00097 2.1E-08 69.0 14.8 129 125-253 10-142 (280)
292 PF13431 TPR_17: Tetratricopep 97.7 4.8E-05 1E-09 51.4 3.4 32 139-170 2-33 (34)
293 PLN03004 UDP-glycosyltransfera 97.6 0.00066 1.4E-08 74.7 13.7 155 473-668 269-432 (451)
294 COG4105 ComL DNA uptake lipopr 97.6 0.01 2.3E-07 58.9 20.5 172 38-251 33-237 (254)
295 KOG0376|consensus 97.6 8.3E-05 1.8E-09 79.2 6.1 112 154-265 8-119 (476)
296 PF04184 ST7: ST7 protein; In 97.6 0.002 4.2E-08 69.3 16.1 105 152-256 261-384 (539)
297 KOG0545|consensus 97.6 0.00092 2E-08 65.2 11.8 101 120-220 182-300 (329)
298 COG0438 RfaG Glycosyltransfera 97.6 0.00083 1.8E-08 69.9 12.9 145 476-669 200-351 (381)
299 PF00515 TPR_1: Tetratricopept 97.5 0.00015 3.3E-09 48.9 4.5 32 219-250 2-33 (34)
300 KOG2053|consensus 97.5 0.0025 5.3E-08 72.5 16.3 133 125-258 18-150 (932)
301 PF04184 ST7: ST7 protein; In 97.5 0.0033 7.1E-08 67.6 16.1 140 120-261 172-339 (539)
302 PLN02670 transferase, transfer 97.5 0.0013 2.8E-08 72.9 13.3 154 473-668 277-440 (472)
303 KOG0853|consensus 97.5 0.001 2.2E-08 72.4 12.1 169 464-670 262-443 (495)
304 PLN03063 alpha,alpha-trehalose 97.5 0.00038 8.2E-09 82.1 9.5 150 474-667 278-451 (797)
305 PF07719 TPR_2: Tetratricopept 97.4 0.00033 7.1E-09 47.0 5.2 33 219-251 2-34 (34)
306 PF03704 BTAD: Bacterial trans 97.4 0.0058 1.3E-07 56.5 14.4 62 185-246 63-124 (146)
307 PLN00414 glycosyltransferase f 97.3 0.0019 4.1E-08 71.2 12.6 158 472-672 250-415 (446)
308 COG3118 Thioredoxin domain-con 97.3 0.013 2.9E-07 59.2 17.3 168 98-267 115-287 (304)
309 PF00515 TPR_1: Tetratricopept 97.3 0.00038 8.1E-09 46.9 4.5 31 186-216 3-33 (34)
310 PLN02173 UDP-glucosyl transfer 97.3 0.0018 4E-08 71.3 12.2 147 473-670 263-417 (449)
311 PLN02410 UDP-glucoronosyl/UDP- 97.3 0.0019 4.1E-08 71.3 12.4 146 473-661 263-411 (451)
312 KOG1586|consensus 97.3 0.0094 2E-07 58.0 15.3 135 118-253 35-189 (288)
313 PF07719 TPR_2: Tetratricopept 97.3 0.00056 1.2E-08 45.9 5.1 31 152-182 3-33 (34)
314 PLN02863 UDP-glucoronosyl/UDP- 97.3 0.0028 6.2E-08 70.5 13.5 109 472-622 281-389 (477)
315 PLN02562 UDP-glycosyltransfera 97.3 0.003 6.6E-08 69.8 13.5 146 473-669 272-422 (448)
316 PLN02554 UDP-glycosyltransfera 97.3 0.0028 6.1E-08 70.8 13.3 161 473-669 273-450 (481)
317 cd03784 GT1_Gtf_like This fami 97.3 0.0036 7.8E-08 68.4 14.0 87 571-664 287-376 (401)
318 KOG2053|consensus 97.3 0.064 1.4E-06 61.5 23.6 187 1-251 24-259 (932)
319 KOG2610|consensus 97.3 0.0037 8E-08 63.6 12.5 147 123-269 110-264 (491)
320 KOG1585|consensus 97.3 0.022 4.8E-07 55.8 17.2 121 120-241 114-250 (308)
321 KOG0551|consensus 97.3 0.0019 4.2E-08 65.7 10.3 103 150-252 81-187 (390)
322 PLN02448 UDP-glycosyltransfera 97.2 0.003 6.6E-08 70.2 13.1 136 472-661 272-416 (459)
323 PLN02764 glycosyltransferase f 97.2 0.0029 6.3E-08 69.6 12.5 157 472-671 255-419 (453)
324 TIGR02919 accessory Sec system 97.2 0.0026 5.6E-08 69.8 12.0 127 489-668 291-419 (438)
325 COG2976 Uncharacterized protei 97.2 0.014 3.1E-07 55.4 15.1 117 134-251 70-192 (207)
326 PLN02167 UDP-glycosyltransfera 97.2 0.0041 9E-08 69.4 13.7 152 473-668 279-443 (475)
327 PF05843 Suf: Suppressor of fo 97.2 0.0025 5.4E-08 66.0 11.2 118 152-269 3-124 (280)
328 PRK14501 putative bifunctional 97.2 0.0019 4.2E-08 76.0 11.6 141 474-661 264-429 (726)
329 PLN02207 UDP-glycosyltransfera 97.2 0.0038 8.3E-08 69.1 12.8 105 473-622 274-378 (468)
330 PF10300 DUF3808: Protein of u 97.2 0.0058 1.3E-07 67.9 14.2 118 130-247 247-376 (468)
331 PLN00164 glucosyltransferase; 97.2 0.0029 6.4E-08 70.5 11.7 161 473-671 271-443 (480)
332 PHA03392 egt ecdysteroid UDP-g 97.2 0.0055 1.2E-07 68.9 13.9 139 475-669 297-441 (507)
333 PF00201 UDPGT: UDP-glucoronos 97.1 0.0037 8E-08 70.5 12.7 138 473-669 275-418 (500)
334 PLN02208 glycosyltransferase f 97.1 0.0053 1.1E-07 67.7 13.4 152 473-671 250-413 (442)
335 PLN02992 coniferyl-alcohol glu 97.1 0.0034 7.3E-08 69.7 11.7 161 473-661 262-428 (481)
336 KOG2047|consensus 97.1 0.091 2E-06 58.2 21.8 154 111-265 343-524 (835)
337 cd03793 GT1_Glycogen_synthase_ 97.1 0.0025 5.4E-08 70.9 10.4 106 558-668 429-559 (590)
338 PLN02210 UDP-glucosyl transfer 97.1 0.005 1.1E-07 68.2 12.9 140 473-662 268-417 (456)
339 PLN03015 UDP-glucosyl transfer 97.1 0.005 1.1E-07 68.0 12.6 117 472-622 265-381 (470)
340 KOG3617|consensus 97.1 0.042 9.2E-07 62.1 19.3 129 116-244 911-1106(1416)
341 PF03704 BTAD: Bacterial trans 97.1 0.015 3.3E-07 53.7 13.8 88 126-213 16-125 (146)
342 KOG0530|consensus 97.0 0.0095 2.1E-07 58.9 12.4 175 116-290 42-235 (318)
343 KOG2047|consensus 97.0 0.12 2.7E-06 57.2 22.0 143 118-260 388-555 (835)
344 PLN02534 UDP-glycosyltransfera 97.0 0.0048 1E-07 68.8 11.7 107 473-622 282-390 (491)
345 KOG1585|consensus 97.0 0.045 9.7E-07 53.8 16.4 128 118-245 32-177 (308)
346 PLN02555 limonoid glucosyltran 97.0 0.0054 1.2E-07 68.2 11.7 152 474-671 277-439 (480)
347 TIGR03492 conserved hypothetic 96.9 0.0087 1.9E-07 65.2 12.8 103 558-668 252-372 (396)
348 KOG0530|consensus 96.9 0.036 7.8E-07 54.9 15.3 160 107-266 67-236 (318)
349 COG0790 FOG: TPR repeat, SEL1 96.9 0.1 2.2E-06 54.2 20.2 131 130-267 91-237 (292)
350 KOG1308|consensus 96.9 0.00087 1.9E-08 68.5 4.2 90 161-250 125-214 (377)
351 PLN02152 indole-3-acetate beta 96.9 0.0091 2E-07 65.9 12.6 148 473-661 260-418 (455)
352 COG1819 Glycosyl transferases, 96.9 0.01 2.2E-07 64.8 12.8 94 568-669 281-377 (406)
353 PRK09814 beta-1,6-galactofuran 96.9 0.005 1.1E-07 65.5 10.2 93 571-672 206-310 (333)
354 KOG1387|consensus 96.9 0.011 2.4E-07 60.5 11.8 157 474-671 268-436 (465)
355 PF13281 DUF4071: Domain of un 96.9 0.042 9.2E-07 58.4 16.7 90 126-215 151-257 (374)
356 KOG0551|consensus 96.9 0.015 3.3E-07 59.4 12.5 96 121-216 86-185 (390)
357 KOG2796|consensus 96.9 0.023 4.9E-07 56.3 13.3 119 151-269 178-303 (366)
358 PF13181 TPR_8: Tetratricopept 96.8 0.0021 4.5E-08 43.1 4.4 32 219-250 2-33 (34)
359 PLN03007 UDP-glucosyltransfera 96.8 0.0099 2.2E-07 66.5 12.3 109 472-622 283-391 (482)
360 KOG1308|consensus 96.8 0.00056 1.2E-08 69.9 1.5 93 124-216 122-214 (377)
361 PF08424 NRDE-2: NRDE-2, neces 96.7 0.18 3.9E-06 53.3 19.7 117 132-248 47-184 (321)
362 COG0707 MurG UDP-N-acetylgluco 96.7 0.02 4.3E-07 61.1 12.5 106 557-671 224-335 (357)
363 KOG4507|consensus 96.6 0.0047 1E-07 67.0 7.2 109 155-263 612-721 (886)
364 TIGR02398 gluc_glyc_Psyn gluco 96.6 0.021 4.6E-07 63.3 12.5 116 464-615 277-406 (487)
365 PF13524 Glyco_trans_1_2: Glyc 96.6 0.0055 1.2E-07 51.7 6.0 71 595-671 2-73 (92)
366 PF13181 TPR_8: Tetratricopept 96.6 0.0042 9.2E-08 41.6 4.3 30 152-181 3-32 (34)
367 KOG4507|consensus 96.5 0.0072 1.6E-07 65.7 7.9 97 129-225 620-717 (886)
368 TIGR03568 NeuC_NnaA UDP-N-acet 96.5 0.034 7.3E-07 59.9 13.4 85 571-668 261-346 (365)
369 PF10300 DUF3808: Protein of u 96.5 0.073 1.6E-06 59.3 16.2 139 129-268 201-356 (468)
370 KOG2610|consensus 96.5 0.051 1.1E-06 55.7 12.9 117 153-269 106-226 (491)
371 KOG3617|consensus 96.5 0.06 1.3E-06 60.9 14.6 116 129-246 839-995 (1416)
372 KOG3824|consensus 96.4 0.0086 1.9E-07 60.3 6.8 64 162-225 128-191 (472)
373 PF02350 Epimerase_2: UDP-N-ac 96.4 0.026 5.7E-07 60.2 11.1 141 472-668 178-326 (346)
374 KOG2471|consensus 96.3 0.014 3E-07 62.4 8.2 111 120-230 244-381 (696)
375 KOG3824|consensus 96.2 0.014 3.1E-07 58.8 7.5 71 190-260 122-192 (472)
376 KOG1550|consensus 96.2 0.21 4.6E-06 56.9 18.1 153 104-262 231-406 (552)
377 COG1519 KdtA 3-deoxy-D-manno-o 96.2 0.13 2.8E-06 54.9 14.9 159 464-670 222-396 (419)
378 PF02684 LpxB: Lipid-A-disacch 96.2 0.032 6.8E-07 59.8 10.4 135 486-669 200-349 (373)
379 PF13281 DUF4071: Domain of un 96.1 0.078 1.7E-06 56.4 12.9 118 149-267 140-274 (374)
380 PF13176 TPR_7: Tetratricopept 96.1 0.011 2.3E-07 40.5 4.3 26 221-246 2-27 (36)
381 COG3898 Uncharacterized membra 96.1 0.66 1.4E-05 48.8 18.9 153 128-284 166-336 (531)
382 COG0790 FOG: TPR repeat, SEL1 96.1 0.88 1.9E-05 47.2 20.8 147 101-252 93-271 (292)
383 COG3898 Uncharacterized membra 96.0 1.5 3.2E-05 46.3 21.2 129 130-264 243-374 (531)
384 PRK12446 undecaprenyldiphospho 95.8 0.12 2.6E-06 55.4 13.0 82 584-668 245-333 (352)
385 PF13174 TPR_6: Tetratricopept 95.8 0.017 3.8E-07 38.1 4.2 31 220-250 2-32 (33)
386 KOG2396|consensus 95.8 0.12 2.7E-06 55.7 12.5 92 133-224 88-180 (568)
387 PF13174 TPR_6: Tetratricopept 95.8 0.018 3.8E-07 38.0 4.2 30 187-216 3-32 (33)
388 PF13176 TPR_7: Tetratricopept 95.7 0.019 4.1E-07 39.2 4.3 25 187-211 2-26 (36)
389 PRK10941 hypothetical protein; 95.7 0.11 2.4E-06 53.1 11.6 72 186-257 183-254 (269)
390 PF12968 DUF3856: Domain of Un 95.7 0.32 6.9E-06 42.5 12.3 62 186-247 57-129 (144)
391 KOG2396|consensus 95.7 0.13 2.8E-06 55.5 12.1 88 170-257 91-179 (568)
392 TIGR03590 PseG pseudaminic aci 95.6 0.028 6.2E-07 58.1 7.2 55 557-621 213-267 (279)
393 PF02259 FAT: FAT domain; Int 95.6 0.42 9.1E-06 50.8 16.5 104 126-229 156-303 (352)
394 COG3118 Thioredoxin domain-con 95.6 0.24 5.2E-06 50.3 13.3 61 139-199 225-287 (304)
395 KOG1550|consensus 95.6 3.4 7.3E-05 47.2 24.4 183 3-212 229-425 (552)
396 PF09613 HrpB1_HrpK: Bacterial 95.6 0.2 4.3E-06 46.6 11.6 83 153-235 13-95 (160)
397 PF14561 TPR_20: Tetratricopep 95.6 0.13 2.7E-06 43.4 9.6 72 136-207 8-81 (90)
398 PF04910 Tcf25: Transcriptiona 95.5 0.5 1.1E-05 50.7 16.3 56 122-177 109-166 (360)
399 PF02259 FAT: FAT domain; Int 95.5 0.39 8.4E-06 51.1 15.6 120 146-265 142-305 (352)
400 COG2976 Uncharacterized protei 95.5 0.16 3.5E-06 48.5 10.7 94 123-217 96-192 (207)
401 TIGR00661 MJ1255 conserved hyp 95.4 0.033 7.1E-07 58.9 6.8 81 572-656 229-310 (321)
402 COG4649 Uncharacterized protei 95.4 1.5 3.3E-05 41.2 16.4 149 115-264 57-212 (221)
403 PF13528 Glyco_trans_1_3: Glyc 95.4 0.077 1.7E-06 55.8 9.6 70 571-644 231-301 (318)
404 PF08424 NRDE-2: NRDE-2, neces 95.4 0.53 1.2E-05 49.7 15.8 111 137-247 6-131 (321)
405 PRK10941 hypothetical protein; 95.3 0.2 4.4E-06 51.2 11.7 76 152-227 183-258 (269)
406 PF12968 DUF3856: Domain of Un 95.2 0.56 1.2E-05 41.1 12.3 90 124-213 17-129 (144)
407 smart00028 TPR Tetratricopepti 95.2 0.029 6.2E-07 35.8 3.7 31 220-250 3-33 (34)
408 PF14853 Fis1_TPR_C: Fis1 C-te 95.2 0.12 2.5E-06 38.7 7.2 37 220-256 3-39 (53)
409 PF14561 TPR_20: Tetratricopep 95.2 0.17 3.6E-06 42.6 9.0 66 170-235 8-75 (90)
410 PLN03064 alpha,alpha-trehalose 95.1 0.26 5.5E-06 58.8 13.4 159 464-668 355-536 (934)
411 PF04781 DUF627: Protein of un 94.9 0.19 4.2E-06 43.5 8.7 101 124-247 4-107 (111)
412 PF09613 HrpB1_HrpK: Bacterial 94.8 0.76 1.7E-05 42.8 13.1 85 185-269 11-95 (160)
413 PF14853 Fis1_TPR_C: Fis1 C-te 94.8 0.16 3.4E-06 38.1 7.0 37 186-222 3-39 (53)
414 PF04781 DUF627: Protein of un 94.8 0.23 5E-06 43.0 8.9 82 157-261 3-87 (111)
415 KOG1192|consensus 94.7 0.18 3.9E-06 56.7 10.7 103 474-626 277-388 (496)
416 smart00028 TPR Tetratricopepti 94.6 0.051 1.1E-06 34.5 3.7 29 153-181 4-32 (34)
417 PF08631 SPO22: Meiosis protei 94.6 2.2 4.8E-05 44.0 17.6 123 127-249 4-152 (278)
418 PF09986 DUF2225: Uncharacteri 94.5 0.42 9.2E-06 47.2 11.4 32 218-249 165-196 (214)
419 COG4976 Predicted methyltransf 94.3 0.052 1.1E-06 52.8 4.4 62 192-253 3-64 (287)
420 KOG0529|consensus 94.3 0.86 1.9E-05 48.4 13.5 133 131-263 44-194 (421)
421 COG0763 LpxB Lipid A disacchar 94.3 0.32 6.9E-06 51.4 10.4 157 464-669 177-353 (381)
422 PF04910 Tcf25: Transcriptiona 94.3 1.6 3.5E-05 46.8 16.1 128 141-268 31-194 (360)
423 KOG2300|consensus 94.2 1.5 3.2E-05 47.5 15.0 118 128-248 335-475 (629)
424 COG4976 Predicted methyltransf 94.1 0.072 1.6E-06 51.9 4.8 59 159-217 4-62 (287)
425 KOG0985|consensus 94.1 1.5 3.3E-05 51.3 15.8 137 112-265 1190-1326(1666)
426 KOG1310|consensus 94.0 0.15 3.2E-06 55.3 7.3 89 163-251 387-478 (758)
427 PF07079 DUF1347: Protein of u 94.0 2.3 5E-05 45.7 15.9 117 124-243 387-520 (549)
428 KOG2300|consensus 93.9 1.1 2.4E-05 48.4 13.5 137 128-267 379-540 (629)
429 PF09986 DUF2225: Uncharacteri 93.9 0.67 1.4E-05 45.8 11.3 95 131-225 92-207 (214)
430 PRK01021 lpxB lipid-A-disaccha 93.8 0.61 1.3E-05 52.7 12.0 82 586-672 483-583 (608)
431 KOG1914|consensus 93.7 2.1 4.6E-05 47.0 15.3 139 109-248 12-167 (656)
432 TIGR02561 HrpB1_HrpK type III 93.7 0.83 1.8E-05 41.8 10.5 79 157-235 17-95 (153)
433 PF13374 TPR_10: Tetratricopep 93.6 0.16 3.4E-06 35.3 4.8 29 219-247 3-31 (42)
434 KOG3364|consensus 93.5 1.1 2.5E-05 40.1 10.7 73 150-222 32-109 (149)
435 PRK15180 Vi polysaccharide bio 93.4 0.51 1.1E-05 50.7 9.9 137 121-257 294-430 (831)
436 PF10602 RPN7: 26S proteasome 93.4 1.7 3.7E-05 41.6 13.0 99 150-248 36-143 (177)
437 KOG4814|consensus 93.4 0.63 1.4E-05 51.8 10.8 95 119-213 357-457 (872)
438 KOG0890|consensus 93.4 3 6.6E-05 53.3 17.8 132 132-265 1645-1802(2382)
439 KOG1310|consensus 93.1 0.24 5.2E-06 53.7 7.1 91 128-218 386-479 (758)
440 PF04101 Glyco_tran_28_C: Glyc 93.1 0.14 3.1E-06 48.3 5.1 92 572-669 55-153 (167)
441 COG0297 GlgA Glycogen synthase 93.1 0.56 1.2E-05 52.1 10.2 115 464-622 281-401 (487)
442 KOG4814|consensus 92.8 0.99 2.1E-05 50.3 11.2 95 153-247 357-457 (872)
443 PF13374 TPR_10: Tetratricopep 92.7 0.25 5.5E-06 34.2 4.7 28 152-179 4-31 (42)
444 KOG3364|consensus 92.7 2.3 5E-05 38.2 11.4 83 183-265 31-118 (149)
445 COG5191 Uncharacterized conser 92.3 0.22 4.8E-06 50.6 5.2 84 174-257 97-181 (435)
446 COG2909 MalT ATP-dependent tra 92.1 16 0.00035 42.8 20.2 98 150-247 415-526 (894)
447 KOG2941|consensus 91.5 1.2 2.6E-05 46.3 9.5 113 553-673 301-422 (444)
448 COG3914 Spy Predicted O-linked 91.4 3.1 6.7E-05 46.2 13.0 140 130-269 45-193 (620)
449 COG5191 Uncharacterized conser 91.3 0.32 6.9E-06 49.5 5.1 87 138-224 95-182 (435)
450 KOG1839|consensus 91.0 1.2 2.7E-05 53.7 10.3 148 121-268 937-1115(1236)
451 KOG2422|consensus 90.8 22 0.00048 39.7 18.7 171 2-215 254-450 (665)
452 TIGR02561 HrpB1_HrpK type III 90.7 2.7 5.9E-05 38.5 10.0 83 187-269 13-95 (153)
453 KOG1258|consensus 90.5 7.8 0.00017 43.3 15.2 114 126-239 307-421 (577)
454 PF10373 EST1_DNA_bind: Est1 D 90.5 0.8 1.7E-05 47.0 7.6 62 203-264 1-62 (278)
455 KOG3616|consensus 90.4 7.9 0.00017 44.0 15.0 33 2-35 460-492 (1636)
456 COG2909 MalT ATP-dependent tra 90.3 25 0.00053 41.4 19.4 116 118-233 417-552 (894)
457 KOG1914|consensus 90.3 6 0.00013 43.6 13.8 122 140-263 10-139 (656)
458 KOG1538|consensus 90.3 2.6 5.7E-05 47.1 11.3 109 126-245 713-831 (1081)
459 KOG1258|consensus 90.2 6.6 0.00014 43.9 14.4 139 131-269 270-417 (577)
460 PF07429 Glyco_transf_56: 4-al 90.2 2.5 5.5E-05 44.3 10.6 81 558-644 232-314 (360)
461 KOG4014|consensus 89.9 9.2 0.0002 36.3 12.9 144 114-264 31-212 (248)
462 COG2912 Uncharacterized conser 89.8 2.2 4.7E-05 43.3 9.5 71 186-256 183-253 (269)
463 KOG0529|consensus 89.4 10 0.00022 40.6 14.4 127 131-257 90-234 (421)
464 KOG0985|consensus 89.3 27 0.00059 41.6 18.6 125 124-268 1141-1265(1666)
465 PF15015 NYD-SP12_N: Spermatog 89.3 5.2 0.00011 42.7 12.0 89 157-245 183-289 (569)
466 PF05159 Capsule_synth: Capsul 89.3 1.2 2.6E-05 45.7 7.7 89 487-622 138-226 (269)
467 PF12862 Apc5: Anaphase-promot 88.8 2.1 4.5E-05 36.2 7.5 55 195-249 9-72 (94)
468 KOG1464|consensus 88.7 29 0.00063 35.1 16.4 117 153-269 148-289 (440)
469 PF10373 EST1_DNA_bind: Est1 D 88.7 1.4 3E-05 45.1 7.7 62 135-196 1-62 (278)
470 PF12862 Apc5: Anaphase-promot 88.6 2.4 5.2E-05 35.8 7.8 28 186-213 43-70 (94)
471 KOG3807|consensus 88.5 11 0.00024 39.0 13.5 129 124-265 192-324 (556)
472 PRK02797 4-alpha-L-fucosyltran 88.4 3.8 8.2E-05 42.4 10.2 80 558-643 193-274 (322)
473 COG2912 Uncharacterized conser 88.0 3.4 7.5E-05 41.8 9.5 76 152-227 183-258 (269)
474 KOG2041|consensus 87.7 13 0.00028 42.2 14.3 81 150-242 796-876 (1189)
475 COG3629 DnrI DNA-binding trans 87.7 4.5 9.8E-05 41.5 10.3 63 150-212 153-215 (280)
476 KOG3616|consensus 87.6 4.4 9.5E-05 46.0 10.7 102 129-241 745-847 (1636)
477 PRK13184 pknD serine/threonine 86.9 8.2 0.00018 46.4 13.4 130 124-254 483-627 (932)
478 COG4941 Predicted RNA polymera 86.8 9.8 0.00021 39.6 11.9 93 131-224 311-405 (415)
479 PF07079 DUF1347: Protein of u 86.6 34 0.00073 37.3 16.2 125 123-247 13-157 (549)
480 PRK10422 lipopolysaccharide co 86.3 3.8 8.2E-05 43.8 9.6 53 573-629 244-296 (352)
481 PF07720 TPR_3: Tetratricopept 86.2 2.4 5.3E-05 28.9 5.1 18 189-206 6-23 (36)
482 PF10602 RPN7: 26S proteasome 85.9 8.9 0.00019 36.6 10.9 93 122-214 42-143 (177)
483 PRK14089 ipid-A-disaccharide s 85.8 1.3 2.9E-05 47.1 5.7 54 587-644 231-287 (347)
484 TIGR02201 heptsyl_trn_III lipo 85.5 4.5 9.7E-05 43.1 9.7 52 574-629 243-294 (344)
485 KOG1839|consensus 85.0 5 0.00011 48.7 10.2 134 112-245 968-1126(1236)
486 PF10345 Cohesin_load: Cohesin 84.7 38 0.00083 39.2 17.4 122 132-254 37-177 (608)
487 COG3629 DnrI DNA-binding trans 84.6 4.8 0.0001 41.2 8.7 64 184-247 153-216 (280)
488 PF07720 TPR_3: Tetratricopept 84.3 3.4 7.4E-05 28.1 5.1 33 219-251 2-36 (36)
489 PF10579 Rapsyn_N: Rapsyn N-te 84.1 7.1 0.00015 31.7 7.6 51 194-244 16-69 (80)
490 PF10516 SHNi-TPR: SHNi-TPR; 84.1 1.7 3.7E-05 30.0 3.6 28 152-179 3-30 (38)
491 KOG2581|consensus 84.0 15 0.00032 39.3 11.9 125 128-252 138-281 (493)
492 COG5107 RNA14 Pre-mRNA 3'-end 83.9 70 0.0015 34.9 17.0 125 127-251 408-535 (660)
493 PF07721 TPR_4: Tetratricopept 83.9 1.4 2.9E-05 27.5 2.8 22 220-241 3-24 (26)
494 PF07721 TPR_4: Tetratricopept 83.3 1.5 3.2E-05 27.3 2.8 21 153-173 4-24 (26)
495 PRK13184 pknD serine/threonine 83.0 4.4 9.5E-05 48.7 8.8 97 157-254 482-588 (932)
496 KOG0546|consensus 82.7 1.3 2.7E-05 46.3 3.6 79 185-263 276-354 (372)
497 PF11207 DUF2989: Protein of u 82.6 12 0.00025 36.4 9.9 55 183-238 140-198 (203)
498 PF10516 SHNi-TPR: SHNi-TPR; 82.6 2.2 4.7E-05 29.5 3.6 29 219-247 2-30 (38)
499 PF11207 DUF2989: Protein of u 82.5 5.2 0.00011 38.7 7.5 73 131-204 121-198 (203)
500 COG4394 Uncharacterized protei 82.2 2.7 5.8E-05 42.5 5.5 45 572-620 238-282 (370)
No 1
>KOG4626|consensus
Probab=100.00 E-value=4.1e-99 Score=786.19 Aligned_cols=538 Identities=57% Similarity=0.910 Sum_probs=478.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY 65 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~ 65 (673)
++++|..+|.+|++.+|..+-+|.+||.++..+|+ |.+..+|+++|.+|.+.+.+++|.. +|..
T Consensus 199 rl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs-~Y~r 277 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS-CYLR 277 (966)
T ss_pred ccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH-HHHH
Confidence 46789999999999999999999999999999985 8899999999999999999999985 7888
Q ss_pred HhhcCCCchh---hhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHHHHH-HcCCHHHHHHHH
Q psy17691 66 TRELAPGNRI---RIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIISVL-LLIQVSEAEECY 139 (673)
Q Consensus 66 ~~~l~p~~~~---~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~~~-~~g~~~~A~~~~ 139 (673)
+..+.|++.. +++-+|...|.. ..++..+ +++++|+.+.++..++..+ ..|+..+|..+|
T Consensus 278 Al~lrpn~A~a~gNla~iYyeqG~l--------------dlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 278 ALNLRPNHAVAHGNLACIYYEQGLL--------------DLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred HHhcCCcchhhccceEEEEeccccH--------------HHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHH
Confidence 8888888864 455556555543 2344444 6678999999997776555 599999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691 140 NTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD 219 (673)
Q Consensus 140 ~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 219 (673)
.+++.+.|+++++.++||++|.++|.+++|...|+++++..|..+.+++|||.+|.++|++++|+.+|++++++.|..++
T Consensus 344 nkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 344 NKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHHHH----
Q psy17691 220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLLLL---- 286 (673)
Q Consensus 220 ~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~~~---- 286 (673)
++.|+|+.|..+|+.++|+++|.+|+.++|..++++.|||.+|.+.|+.. |+++||++++++|+..+
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 89999999999998721
Q ss_pred ------------------------------------------------hhccccc-----cc------------------
Q psy17691 287 ------------------------------------------------DAHSNLA-----SI------------------ 295 (673)
Q Consensus 287 ------------------------------------------------~~~~~~~-----~~------------------ 295 (673)
.+|.++| .+
T Consensus 504 cdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~~~~~rl 583 (966)
T KOG4626|consen 504 CDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLYPLSHILRKAIAAKHANLCLDKVHVLGKPPYTHPDNLKVKEGRL 583 (966)
T ss_pred hcccchHHHHHHHHHHHHHHHhhhcCCccCcccccccccchHHHHHHHHHHhhhhHHHHHhccCCCCCChhhCCCCcCce
Confidence 1222222 00
Q ss_pred -----------ccc---------------------------------------hhhhhhhhh-------------hhhhh
Q psy17691 296 -----------HKD---------------------------------------SVVMSLLQI-------------IHEFI 312 (673)
Q Consensus 296 -----------~~~---------------------------------------~~~~~l~~~-------------~DiLv 312 (673)
|.. .||.|++|+ |||||
T Consensus 584 rIGYvSsDFgnHp~Shlmqsv~gmHdr~kveVfcYals~~d~t~fR~kv~~e~ehf~Dls~i~~~kiA~~I~qD~I~ILv 663 (966)
T KOG4626|consen 584 RIGYVSSDFGNHPTSHLMQSVPGMHDRSKVEVFCYALSVNDGTNFRDKVMKEAEHFVDLSQIPCNKIADKIRQDKIHILV 663 (966)
T ss_pred EEEeecccccCCchHHHhccCcCcCCccceEEEEEEeecCCCchHHHHHHhhccceeehhcCChHHHHHHHhhcCceEEE
Confidence 111 234466654 48999
Q ss_pred --cc---------ccccchhhhhhhhcCCCCCCCcccccccccCccCchhhhHHHHhhhccCCCccccccccccCchhhh
Q psy17691 313 --VG---------FDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKE 381 (673)
Q Consensus 313 --~G---------fa~rpApvQ~~~lGyp~ttG~~~~Dy~l~d~~~~p~~~~~~ysE~l~~lp~~~~~~~~~~~~~~~~~ 381 (673)
.| ||+|||||||+|+|||||||+++|||+|+|.++.|++....|+|++++||+|||++||.+.-.+
T Consensus 664 nlnGyTkgarneifAlrPAPIQv~wlGyPgTtGa~~mDYiITDs~tsPl~~a~~ysEkLv~lPh~ffi~d~~qk~~~--- 740 (966)
T KOG4626|consen 664 NLNGYTKGARNEIFALRPAPIQVMWLGYPGTTGATFMDYIITDSVTSPLELAQQYSEKLVYLPHCFFIGDHKQKNQD--- 740 (966)
T ss_pred eccccccccccceeeccCCceeEEeecCCCCCCCceeeEEeecccCChHHHHHHHHHHHhhCCceEEecCccccccc---
Confidence 55 9999999999999999999999999999999999999999999999999999999987642100
Q ss_pred hhhhccccccccccCCCcccccCCCCccchhhhhhhhccccccccccceeeecCceeccCccccccccccccCcccCccc
Q psy17691 382 RFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKTMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSI 461 (673)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (673)
.++ | ++
T Consensus 741 ------~~d-------------------p-------------------------------------n~------------ 746 (966)
T KOG4626|consen 741 ------VLD-------------------P-------------------------------------NN------------ 746 (966)
T ss_pred ------ccC-------------------C-------------------------------------CC------------
Confidence 000 0 00
Q ss_pred ccccccccCCCCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691 462 VITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA 541 (673)
Q Consensus 462 ~~~~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (673)
.++|+++|||+|.|||||||+++||+|.++++|++||++||||+||++.
T Consensus 747 -kP~r~~y~Lp~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~Lwllr------------------------------ 795 (966)
T KOG4626|consen 747 -KPTRSQYGLPEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLR------------------------------ 795 (966)
T ss_pred -CCCCCCCCCCCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEe------------------------------
Confidence 1368899999999999999999999999999999999999999999988
Q ss_pred cCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecC
Q psy17691 542 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 621 (673)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~ 621 (673)
||..++.+++..+++.|++++||+|++....+||+++++.+||+|||++++|+||++|.||||||+|||+
T Consensus 796 ----------fPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTplcnGhTTg~dvLw~GvPmVTmp 865 (966)
T KOG4626|consen 796 ----------FPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGVPMVTMP 865 (966)
T ss_pred ----------ccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcCcCCcccchhhhccCCceeecc
Confidence 5666678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 622 GETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 622 g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
|+++++|+++|+|..+|++++||.+.|||+++||+||+|.+.++++|..+
T Consensus 866 ge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~Latd~~~L~~lr~~l 915 (966)
T KOG4626|consen 866 GETLASRVAASLLTALGLGHLIAKNREEYVQIAVRLATDKEYLKKLRAKL 915 (966)
T ss_pred cHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999865
No 2
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=100.00 E-value=1.1e-76 Score=631.64 Aligned_cols=322 Identities=56% Similarity=0.872 Sum_probs=244.6
Q ss_pred hhhhh--cc---------ccccchhhhhhhhcCCCCCCCcccccccccCccCchhhhHHHHhhhccCCCccccccccccC
Q psy17691 308 IHEFI--VG---------FDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMF 376 (673)
Q Consensus 308 ~DiLv--~G---------fa~rpApvQ~~~lGyp~ttG~~~~Dy~l~d~~~~p~~~~~~ysE~l~~lp~~~~~~~~~~~~ 376 (673)
||||| +| |++||||||++|||||+|||+++|||+|+|++++|++.+.+|+|||+|||++|+|+||.+.|
T Consensus 78 IDILVDL~GhT~~~R~~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~~~P~~~~~~ysEkLirLP~sy~~~d~~~~~ 157 (468)
T PF13844_consen 78 IDILVDLSGHTAGNRLEIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPVTDPPEAEEHYSEKLIRLPHSYFCNDHRQMF 157 (468)
T ss_dssp -SEEEESSTSSTSSSHHHHHT-SSSEEEEESSSSS---STT--EEEEETTTS-GGGGGG-SSEEEEESS-S----HHHH-
T ss_pred CCEEEeCCCcCCCCHhHHHhcCCcceEEEecCCCcccCCcccCEEEECCCcCCcccccCCccceEEccCceEECChHHhh
Confidence 59999 66 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhccccccccccCCCcccccCCCCccchhhh--------------------------------hhhhcccccc
Q psy17691 377 PHLKERFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKE--------------------------------RFIVSGKTMI 424 (673)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--------------------------------~~~~~~~~~~ 424 (673)
++++.+..+..+-... ..++.......+..|.+.. +-..|+..|+
T Consensus 158 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (468)
T PF13844_consen 158 PHLKERIVLEEKDDSR---VVDNVAVINATDLSPLLEKTEVKDTVRENIVLSGDGKDATSTEVELPVLEQPTTTPIEQMI 234 (468)
T ss_dssp GGGSS-EEEE-----------SSSEEEE-TTHHHHHHTSST-EEEEE---------------EEEEEEESSHHHHHHHHH
T ss_pred hhhhhceEeccccCCc---ccchhhhhhhhcCchhhhhcchHHHHHHHHhhcCCchhcccceEecccccCccHHHHHHHH
Confidence 9998887655442221 1222222233333333221 0003577899
Q ss_pred ccccceeeecCceeccCccccccccccccCcccCcccccccccccCCCCCcEEEecCCcccccChhhHHHHHHHHhcccC
Q psy17691 425 ASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPN 504 (673)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~ 504 (673)
.+||++.+++|.+++||+++.++++++..++++|++.+.++|++||||+|.|||||||++.|++|+++++|++||+++|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~R~~~gLp~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~ 314 (468)
T PF13844_consen 235 ASGQVQTSVNGVVVQNGLATTQTNNKAATGEEVPQNIVVTTRAQYGLPEDAVVFGSFNNLFKISPETLDLWARILKAVPN 314 (468)
T ss_dssp HHT-SEEEETTEEEEECCGHHHH-HHHHTTSS--SSEEEEETGGGT--SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTT
T ss_pred HcCCeeEeECCEEeecccchhhhhccccCCccCCccccccCHHHcCCCCCceEEEecCccccCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHH
Q psy17691 505 SILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEE 584 (673)
Q Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~ 584 (673)
|+|||+. ++..++++++++++++||+++||+|.+..+.++
T Consensus 315 S~L~L~~----------------------------------------~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~e 354 (468)
T PF13844_consen 315 SRLWLLR----------------------------------------FPASGEARLRRRFAAHGVDPDRIIFSPVAPREE 354 (468)
T ss_dssp EEEEEEE----------------------------------------TSTTHHHHHHHHHHHTTS-GGGEEEEE---HHH
T ss_pred cEEEEee----------------------------------------CCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHH
Confidence 9999987 344567899999999999999999999999999
Q ss_pred HHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHH
Q psy17691 585 HVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYC 664 (673)
Q Consensus 585 ~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~ 664 (673)
|+..|+.+||+|||||||||||+||||||||||||++|++++||+|+|+|+++|++||||.|.++||++|++|++|+++|
T Consensus 355 hl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~D~~~l 434 (468)
T PF13844_consen 355 HLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIADSEEEYVEIAVRLATDPERL 434 (468)
T ss_dssp HHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-HHHH
T ss_pred HHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhc
Q psy17691 665 EKALLYHE 672 (673)
Q Consensus 665 ~~~~~~~~ 672 (673)
+++|+++.
T Consensus 435 ~~lR~~Lr 442 (468)
T PF13844_consen 435 RALRAKLR 442 (468)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998864
No 3
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-68 Score=561.75 Aligned_cols=422 Identities=29% Similarity=0.396 Sum_probs=301.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCHHHHHHH------HHHHHHcCCHH
Q psy17691 129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLK-ALEVFPEFAAAHSNL------ASVLQQQGKLT 201 (673)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~-al~~~p~~~~~~~~l------a~~~~~~g~~~ 201 (673)
.+....+......++..+|++..+..+|+......|....+...+.. +.+..|++......+ +..+...|+..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (620)
T COG3914 80 LADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTA 159 (620)
T ss_pred cccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHH
Confidence 45565666666666666666666666666666555555544444433 666666665554444 55566666666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhC-------------CC-CHHHHHHHHHHHHHc
Q psy17691 202 DALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQ--GALQCYSRAIQIN-------------PG-FADAHSNLASIHKDS 265 (673)
Q Consensus 202 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--eA~~~~~~Al~l~-------------p~-~~~a~~~La~~~~~~ 265 (673)
++....+++.++.|.++.....+.....++-++. ++...+.+..... |. +......++.+..+.
T Consensus 160 ~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~~~~~tnl~~~~~~~~~~~~~~~~~~~d~p~~~l~~~~q~~~i~~~~ 239 (620)
T COG3914 160 EAELALERAVDLLPKYPRVLGALMTARQEQCSWPEEAPTNLLSQLALFLGIYGFSLAYLADDPLKNLAIANQLLKILSQN 239 (620)
T ss_pred HHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccchhccchHHHHHHHHHhhccccchhhhccchhhhHHHHHHHHHHhccc
Confidence 6666666666666666555444444433333221 1111111111110 10 011111111111100
Q ss_pred --C--CCc------------cc---c---CCCCHHHHHHHHHHhhccccc------ccc-------------cchhhh--
Q psy17691 266 --G--KRG------------FF---I---RTDLNSAYFWLLLLDAHSNLA------SIH-------------KDSVVM-- 302 (673)
Q Consensus 266 --g--~~~------------l~---l---~p~~~~a~~~l~~~~~~~~~~------~~~-------------~~~~~~-- 302 (673)
. ++. ++ + --+++..|....+.+.|++-. .+. ...+|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~~~~~~~ 319 (620)
T COG3914 240 APELVRFPIRDENIKRNGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAVEKWYPI 319 (620)
T ss_pred CCCccccccchhhccccccceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhhhheecc
Confidence 0 000 00 0 013445566666666665421 000 002222
Q ss_pred ---hhhh--------hhhhhh--cc---------ccccchhhhhhhhcCCCCCCCcccccccccCccCchhhhHHHHhhh
Q psy17691 303 ---SLLQ--------IIHEFI--VG---------FDLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKL 360 (673)
Q Consensus 303 ---~l~~--------~~DiLv--~G---------fa~rpApvQ~~~lGyp~ttG~~~~Dy~l~d~~~~p~~~~~~ysE~l 360 (673)
|..+ -||||| +| |++|||||||||+|||+|||++.|||+|+|++++||+++.+|+|||
T Consensus 320 ~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r~~v~A~RpAPiqvswlGy~aT~g~p~~DY~I~D~y~vPp~ae~yysEkl 399 (620)
T COG3914 320 GRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAPIQVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKL 399 (620)
T ss_pred CCcCHHHHHHHHHhcCCeEEEeccCceeccchhhhhcCCCceEEeecccccccCCCcceEEeeCceecCchHHHHHHHHH
Confidence 1111 249999 77 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccccccccCchhhhhhhhccccccccccCCCcccccCCCCccchhhhhhhhccccccccccceeeecCceecc
Q psy17691 361 AFMPDTYFIGDHNQMFPHLKERFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKTMIASGQVQTSVNGIVLQN 440 (673)
Q Consensus 361 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (673)
+|||.||..+|... |.
T Consensus 400 ~RLp~cy~p~d~~~-----------------------------------~v----------------------------- 415 (620)
T COG3914 400 WRLPQCYQPVDGFE-----------------------------------PV----------------------------- 415 (620)
T ss_pred HhcccccCCCCCcc-----------------------------------cC-----------------------------
Confidence 99998887654210 00
Q ss_pred CccccccccccccCcccCcccccccccccCCCCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCC
Q psy17691 441 GLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANI 520 (673)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~ 520 (673)
. +..+|.+.|||++.+||||||+.+|++|+++++|++||++||||+|||++++ +
T Consensus 416 ----------------~----p~~sR~~lglp~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~---~--- 469 (620)
T COG3914 416 ----------------T----PPPSRAQLGLPEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG---D--- 469 (620)
T ss_pred ----------------C----CCcchhhcCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC---C---
Confidence 0 0147889999999999999999999999999999999999999999998721 0
Q ss_pred CCCcccccCCCCccchhhhhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCC
Q psy17691 521 SRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL 600 (673)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p 600 (673)
+....+++++.++++||+.+|++|.|+.+.++|++.|..+||+|||||
T Consensus 470 --------------------------------~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyP 517 (620)
T COG3914 470 --------------------------------DAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYP 517 (620)
T ss_pred --------------------------------cHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeeccc
Confidence 334578899999999999999999999999999999999999999999
Q ss_pred CCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhhhc
Q psy17691 601 CNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYHE 672 (673)
Q Consensus 601 ~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~~ 672 (673)
|+|+||++|||||||||||+.|++|++|+|+||++++|++||||+|.++||++||++++|...|++.|...+
T Consensus 518 Y~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~dral~q~~r~~l~ 589 (620)
T COG3914 518 YGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSDRALRQQVRAELK 589 (620)
T ss_pred CCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhcccHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999886543
No 4
>KOG4626|consensus
Probab=99.97 E-value=8.7e-30 Score=267.56 Aligned_cols=254 Identities=37% Similarity=0.518 Sum_probs=136.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY 65 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~ 65 (673)
++++|+..|+.+++++|++.++|.++|.++..+|+ |+..-+...+|..+..+|+.++|.. +|.+
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~-cYlk 209 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKA-CYLK 209 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHH-HHHH
Confidence 46789999999999999999999999999999986 5555566677777777888777764 5566
Q ss_pred HhhcCCCchh---hhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHHHHH-HcCCHHHHHHHH
Q psy17691 66 TRELAPGNRI---RIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIISVL-LLIQVSEAEECY 139 (673)
Q Consensus 66 ~~~l~p~~~~---~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~~~-~~g~~~~A~~~~ 139 (673)
++...|...+ ++|-++...|.. ..++..+ +..++|+...+|..++..+ ..+.+++|+.+|
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei--------------~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEI--------------WLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchH--------------HHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 6666664432 222222222221 1122222 3344555555554433332 244444444444
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691 140 NTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD 219 (673)
Q Consensus 140 ~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 219 (673)
++|+.+.|+++.++-++|.+|+++|..+-|+.+|++++++.|+.+++++|||..+...|+..+|..+|.+++.+.|++++
T Consensus 276 ~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~had 355 (966)
T KOG4626|consen 276 LRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHAD 355 (966)
T ss_pred HHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 220 ~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
+.+|||++|.++|++++|...|+++++..|+...++.|||.+|.++|+++
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~ 405 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLD 405 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHH
Confidence 44444444444444444444444444444444444444444444444443
No 5
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.91 E-value=1.5e-21 Score=221.95 Aligned_cols=144 Identities=12% Similarity=0.043 Sum_probs=130.2
Q ss_pred CCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy17691 114 PDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 192 (673)
Q Consensus 114 p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 192 (673)
|++..++..+ ......|++++|+..++.+++++|++..++.+++.++.+++++++|...++++++.+|+++.+++.+|.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 3445555444 344558899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691 193 VLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSN 257 (673)
Q Consensus 193 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~ 257 (673)
++.+.|++++|+++|++++..+|+++.++.++|.+++..|+.++|...|++|++...+-...+.+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987665555444
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=4.2e-21 Score=220.94 Aligned_cols=267 Identities=21% Similarity=0.208 Sum_probs=183.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY 65 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~ 65 (673)
+|++|+..|+++|+++|+ +..|.++|.||..+|+ |++..+++.+|.++..+|++++|.... ..
T Consensus 142 ~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~-~~ 219 (615)
T TIGR00990 142 DFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL-TA 219 (615)
T ss_pred CHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HH
Confidence 589999999999999996 7899999999999997 788999999999999999999986432 22
Q ss_pred HhhcCCCch---------------------------------hhhhhhhhhcCCCc------cc-cccc-----------
Q psy17691 66 TRELAPGNR---------------------------------IRIGYVSSDFGNHP------TS-HLMQ----------- 94 (673)
Q Consensus 66 ~~~l~p~~~---------------------------------~~l~~~~~~l~~~~------~a-~~~~----------- 94 (673)
+..+.+... ..++..+....... .. ....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (615)
T TIGR00990 220 SCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGL 299 (615)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHH
Confidence 222221110 00111110000000 00 0000
Q ss_pred ----ccCCCCchhHHHHHHHhc-----CCCChhHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691 95 ----SVPGMHNKSRVEIFCYAL-----SPDDGTTFSYIIS-VLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG 164 (673)
Q Consensus 95 ----~~~~~~~~~a~~~~~~~l-----~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g 164 (673)
......+..++..+...+ .|+...++..++. +..+|++++|+..|+++++++|++..++..+|.++..+|
T Consensus 300 ~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g 379 (615)
T TIGR00990 300 KSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELG 379 (615)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC
Confidence 000012233333332222 2444455544433 345778888888888888888877777788888888888
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691 165 YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRA 244 (673)
Q Consensus 165 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 244 (673)
++++|+..|+++++.+|+++.+++++|.++...|++++|+.+|+++++++|++..++.++|.++.++|++++|+..|+++
T Consensus 380 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888888888888877788888888888888888888888888888877777778888888888888888888888
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 245 IQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 245 l~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
++..|+++.++.++|.++...|+++
T Consensus 460 l~~~P~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 460 KKNFPEAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHhCCCChHHHHHHHHHHHHccCHH
Confidence 8778877777777888887777776
No 7
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=2.2e-19 Score=206.82 Aligned_cols=253 Identities=14% Similarity=0.087 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhHH
Q psy17691 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKYT 66 (673)
Q Consensus 2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~ 66 (673)
+++|+..++.++...|++++++..+|.+....|+ |+++.++..+|.++...|++++|.. .++.+
T Consensus 58 ~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~-~l~~A 136 (656)
T PRK15174 58 TDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVAD-LAEQA 136 (656)
T ss_pred cchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence 3455555566666666666666666655555554 4555555555555555565555553 44444
Q ss_pred hhcCCCch---hhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHH
Q psy17691 67 RELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIISVLLLIQVSEAEECYNT 141 (673)
Q Consensus 67 ~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~ 141 (673)
..+.|++. ..++.++...++...+ +..+ .....|++...+..+..++..|++++|+..+++
T Consensus 137 l~l~P~~~~a~~~la~~l~~~g~~~eA--------------~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 137 WLAFSGNSQIFALHLRTLVLMDKELQA--------------ISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHhCCCcHHHHHHHHHHHHHCCChHHH--------------HHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555442 2333444444432221 1111 112334444433333333344444444444444
Q ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCC
Q psy17691 142 ALRLCP-THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTD----ALLHYKEAIRIQPS 216 (673)
Q Consensus 142 al~~~p-~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e----A~~~~~~al~~~p~ 216 (673)
+++.+| ........++.++...|++++|+..|+++++.+|++..+++++|.++...|++++ |+..|+++++++|+
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 444433 1222223334444444444444444444444444444444444444444444443 44444444444444
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 217 FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 217 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
+..++.++|.++..+|++++|+.+++++++++|+++.++.+++.++...|+++
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT 335 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 44444444444444444444444444444444444444444444444444444
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=3.5e-19 Score=205.18 Aligned_cols=266 Identities=12% Similarity=0.044 Sum_probs=220.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY 65 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~ 65 (673)
++++|+..|+++++.+|+++.++..+|.++...|+ |+...++..++.++...|++++|.. .++.
T Consensus 91 ~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~-~~~~ 169 (656)
T PRK15174 91 QPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAIS-LART 169 (656)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHH-HHHH
Confidence 57899999999999999999999999999999997 7788889999999999999999876 3445
Q ss_pred HhhcCCCchhhh--hhhhhhcCCCcccccccccCCCCchhHHHHHHH--hcCC-CChhHH-HHHHHHHHcCCHHHHHHHH
Q psy17691 66 TRELAPGNRIRI--GYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY--ALSP-DDGTTF-SYIISVLLLIQVSEAEECY 139 (673)
Q Consensus 66 ~~~l~p~~~~~l--~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~--~l~p-~~~~~~-~~~~~~~~~g~~~~A~~~~ 139 (673)
.....|+..... ...+...++ ..++...+.. ...| ...... ..+..+...|++++|+..|
T Consensus 170 ~~~~~P~~~~a~~~~~~l~~~g~--------------~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~ 235 (656)
T PRK15174 170 QAQEVPPRGDMIATCLSFLNKSR--------------LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTG 235 (656)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 555666553211 111222222 2334443322 2222 222222 2345566799999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691 140 NTALRLCPTHADSLNNLANIKREQGYIEE----ATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP 215 (673)
Q Consensus 140 ~~al~~~p~~~~a~~~Lg~~~~~~g~~~e----A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 215 (673)
+++++.+|+++.++.++|.++..+|++++ |+..|+++++++|++..++.++|.++..+|++++|+..++++++++|
T Consensus 236 ~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P 315 (656)
T PRK15174 236 ESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP 315 (656)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999996 89999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHH
Q psy17691 216 SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYF 281 (673)
Q Consensus 216 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~ 281 (673)
+++.++.++|.++.+.|++++|+..|+++++.+|++...+..++.++...|+++ ++.+|++....+
T Consensus 316 ~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~ 390 (656)
T PRK15174 316 DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSF 390 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhH
Confidence 999999999999999999999999999999999999888888899999999987 567777654333
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=6e-19 Score=203.09 Aligned_cols=271 Identities=18% Similarity=0.202 Sum_probs=211.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH---------------------------------
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLAN--------------------------------- 47 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~--------------------------------- 47 (673)
++++|+..++++++++|++..+|+.+|.+|..+|+++.+...+....
T Consensus 175 ~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~ 254 (615)
T TIGR00990 175 DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK 254 (615)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999998655543221110
Q ss_pred ------------HHH------------------------------------HcCChhhhcCChhhHHhhc---CCCc---
Q psy17691 48 ------------ALK------------------------------------EKGQINVLHKPPYKYTREL---APGN--- 73 (673)
Q Consensus 48 ------------~l~------------------------------------~~g~~~~A~~~~~~~~~~l---~p~~--- 73 (673)
.+. ..+++++|.. .++.+... .|..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~-~~~~al~~~~~~~~~a~a 333 (615)
T TIGR00990 255 PENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR-AFEKALDLGKLGEKEAIA 333 (615)
T ss_pred CCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH-HHHHHHhcCCCChhhHHH
Confidence 000 0012333332 23333332 2332
Q ss_pred hhhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691 74 RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHA 150 (673)
Q Consensus 74 ~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~ 150 (673)
...++.++...++. .+++..+ .+.++|+....+... ..+...|++++|+.+|+++++.+|+++
T Consensus 334 ~~~lg~~~~~~g~~--------------~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 399 (615)
T TIGR00990 334 LNLRGTFKCLKGKH--------------LEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP 399 (615)
T ss_pred HHHHHHHHHHcCCH--------------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 24556677666653 3344444 456788888887555 455679999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691 151 DSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE 230 (673)
Q Consensus 151 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 230 (673)
.+++.+|.++...|++++|+.+|+++++++|++..++.++|.++..+|++++|+..|+++++..|+++.++..+|.++..
T Consensus 400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLD 479 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHH------HHHHHH-HHcCCCc---------cccCCCCHHHHHHHHHH
Q psy17691 231 MQDIQGALQCYSRAIQINPGFADAHS------NLASIH-KDSGKRG---------FFIRTDLNSAYFWLLLL 286 (673)
Q Consensus 231 ~g~~~eA~~~~~~Al~l~p~~~~a~~------~La~~~-~~~g~~~---------l~l~p~~~~a~~~l~~~ 286 (673)
+|++++|++.|+++++++|++...+. +.+.++ ...|+++ +.++|++..++..++..
T Consensus 480 ~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~ 551 (615)
T TIGR00990 480 QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQL 551 (615)
T ss_pred ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999999999999987544332 333333 3357766 67899998888777743
No 10
>KOG1126|consensus
Probab=99.84 E-value=2.6e-20 Score=200.05 Aligned_cols=256 Identities=18% Similarity=0.166 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhh
Q psy17691 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVS 81 (673)
Q Consensus 2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~ 81 (673)
..+|+..|++.-+..++-...+..+|..|+++++++.++..|.+..-..... .+. + -....++
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r-v~~-----m-----------eiyST~L 397 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR-VKG-----M-----------EIYSTTL 397 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccc-----h-----------hHHHHHH
Confidence 4688899998667778888888889999999988888877777665432110 000 0 0001111
Q ss_pred hhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691 82 SDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIK 160 (673)
Q Consensus 82 ~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~ 160 (673)
..+ .....-..+..-.+..+|+.++.|..++.++. +++++.|+++|++|++++|.+..+|..+|.=+
T Consensus 398 WHL------------q~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~ 465 (638)
T KOG1126|consen 398 WHL------------QDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHES 465 (638)
T ss_pred HHH------------HhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChh
Confidence 111 11111122333355678999999988877776 88999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17691 161 REQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240 (673)
Q Consensus 161 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~ 240 (673)
....+++.|..+|++|+..+|.+..+|+.+|.+|.++++++.|.-+|++|++++|.+......+|.++.++|+.++|+..
T Consensus 466 ~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~ 545 (638)
T KOG1126|consen 466 IATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQL 545 (638)
T ss_pred hhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHHHH
Q psy17691 241 YSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLLLL 286 (673)
Q Consensus 241 ~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~~~ 286 (673)
|++|+.++|.++-..++.+.++..+++++ -++-|+...+++.+|..
T Consensus 546 ~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki 600 (638)
T KOG1126|consen 546 YEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKI 600 (638)
T ss_pred HHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 99999999999999999999999999997 35789999999888854
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=3.3e-18 Score=209.64 Aligned_cols=273 Identities=17% Similarity=0.153 Sum_probs=213.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHH-----------------------------HHHHHHHHH
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAY-----------------------------CNLANALKE 51 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~-----------------------------~~la~~l~~ 51 (673)
++++|+..|+++++.+|++++++..||.++..+|+++.+..+ ..++..+..
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~ 363 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK 363 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999973322222 233556667
Q ss_pred cCChhhhcCChhhHHhhcCCCch---hhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHH--------
Q psy17691 52 KGQINVLHKPPYKYTRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTF-------- 120 (673)
Q Consensus 52 ~g~~~~A~~~~~~~~~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~-------- 120 (673)
.|++++|.. .++.+..+.|++. ..++.++...++...+...... .+..+|++..++
T Consensus 364 ~g~~~eA~~-~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~------------aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 364 ANNLAQAER-LYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ------------ALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred CCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH------------HHHhCCCCHHHHHHHHHHHH
Confidence 788888775 5677777777664 3566777776665444211100 111222222211
Q ss_pred -----------------------------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691 121 -----------------------------------SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGY 165 (673)
Q Consensus 121 -----------------------------------~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~ 165 (673)
..+..+...|++++|+.+|+++++++|+++.+++.+|.+|.++|+
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 123344568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------------------------
Q psy17691 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEA----------------------------------- 210 (673)
Q Consensus 166 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a----------------------------------- 210 (673)
+++|+..++++++.+|+++..++.++..+...+++++|+..++++
T Consensus 511 ~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 511 RSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 999999999999999999999888888877788887777766542
Q ss_pred -----HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCC
Q psy17691 211 -----IRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDL 276 (673)
Q Consensus 211 -----l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~ 276 (673)
++.+|.++..+..+|.++.++|++++|+++|+++++.+|++.+++.+++.++...|+++ +...|++
T Consensus 591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 33478888899999999999999999999999999999999999999999999999988 5678888
Q ss_pred HHHHHHHHHH
Q psy17691 277 NSAYFWLLLL 286 (673)
Q Consensus 277 ~~a~~~l~~~ 286 (673)
+.++..++.+
T Consensus 671 ~~~~~~la~~ 680 (1157)
T PRK11447 671 LNTQRRVALA 680 (1157)
T ss_pred hHHHHHHHHH
Confidence 8887777643
No 12
>KOG1126|consensus
Probab=99.81 E-value=4.1e-19 Score=190.98 Aligned_cols=225 Identities=19% Similarity=0.236 Sum_probs=197.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY 65 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~ 65 (673)
.|++|.++|+.+-+++|--.+..-....+++++.+ ++.++.|..+|.++.-+++++.|++ +++.
T Consensus 368 ~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik-~f~R 446 (638)
T KOG1126|consen 368 EYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIK-CFKR 446 (638)
T ss_pred HHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHH-HHHH
Confidence 47899999999999999876655555555555543 7888899999999998888888775 4444
Q ss_pred HhhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q psy17691 66 TRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIIS-VLLLIQVSEAEECYNTALR 144 (673)
Q Consensus 66 ~~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~al~ 144 (673)
+.+ ++|+...+|.+.+. +....++|+|..+|++|+.
T Consensus 447 AiQ-------------------------------------------ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 447 AIQ-------------------------------------------LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred hhc-------------------------------------------cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 444 44555555544433 3446799999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy17691 145 LCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM 224 (673)
Q Consensus 145 ~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 224 (673)
.+|.+..+|+.+|.+|.++++++.|+-.|++|++++|.+......+|.++.+.|+.++|+..|++|+.++|.++-..+..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 225 GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 225 g~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
|.++..++++++|+..+++.-++.|++..+++.+|.+|.+.|+.+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 999999999999999999999999999999999999999999987
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.80 E-value=2.5e-17 Score=196.82 Aligned_cols=269 Identities=20% Similarity=0.241 Sum_probs=212.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY 65 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~ 65 (673)
++++|+..++++++.+|++..+|..+|.++...|+ |+....+..++.++...|++++|.. .++.
T Consensus 582 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~ 660 (899)
T TIGR02917 582 QLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT-SLKR 660 (899)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH-HHHH
Confidence 47899999999999999999999999999999987 5677788889999999999999886 5666
Q ss_pred HhhcCCCch---hhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHH-HHHHHcCCHHHHHHHH
Q psy17691 66 TRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYI-ISVLLLIQVSEAEECY 139 (673)
Q Consensus 66 ~~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~ 139 (673)
+....|++. ..++.++...++...+ ...+ .....|+....+... ..+...|++++|+..|
T Consensus 661 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 661 ALELKPDNTEAQIGLAQLLLAAKRTESA--------------KKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHH--------------HHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 677777653 4455556555543322 2222 223455566555443 4455688888888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691 140 NTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD 219 (673)
Q Consensus 140 ~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 219 (673)
+++++..|++ ..+..++.++...|++++|++.++++++.+|++..+++.+|.++...|++++|++.|+++++.+|+++.
T Consensus 727 ~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 805 (899)
T TIGR02917 727 RKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV 805 (899)
T ss_pred HHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH
Confidence 8888888877 677788888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHHHH
Q psy17691 220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLLLL 286 (673)
Q Consensus 220 ~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~~~ 286 (673)
++.++|.++...|+ .+|+.++++++++.|+++..+.++|.++...|+++ ++.+|.++.++++++..
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 880 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 88888888888888 77888888888888888888888888888888887 67778888888777643
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.79 E-value=4.6e-17 Score=194.60 Aligned_cols=271 Identities=19% Similarity=0.188 Sum_probs=236.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY 65 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~ 65 (673)
++++|+..++++++.+|.+...+..++.++...|+ +.....+..++.++...|++++|.. .++.
T Consensus 548 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~ 626 (899)
T TIGR02917 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVS-SFKK 626 (899)
T ss_pred CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHH
Confidence 47899999999999999999999999999999996 5677889999999999999999986 5666
Q ss_pred HhhcCCCch---hhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHH-HHHHHcCCHHHHHHHH
Q psy17691 66 TRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYI-ISVLLLIQVSEAEECY 139 (673)
Q Consensus 66 ~~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~ 139 (673)
.....|.+. ..++.++...++... +...+ .....|++...+... ..+...|++++|+..+
T Consensus 627 ~~~~~~~~~~~~~~l~~~~~~~~~~~~--------------A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 627 LLALQPDSALALLLLADAYAVMKNYAK--------------AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHH--------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666653 456777777776433 33333 345678888777555 4556699999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691 140 NTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD 219 (673)
Q Consensus 140 ~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 219 (673)
+++.+..|++...+..+|.++...|++++|+..|+++++..|++ ..+.+++.++...|++++|++.++++++.+|++..
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 771 (899)
T TIGR02917 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAV 771 (899)
T ss_pred HHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999999999999999988 78889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc--------cccCCCCHHHHHHHHHHh
Q psy17691 220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG--------FFIRTDLNSAYFWLLLLD 287 (673)
Q Consensus 220 ~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~--------l~l~p~~~~a~~~l~~~~ 287 (673)
+++.+|.++..+|++++|+.+|+++++..|+++.++.+++.++...|+.+ +.+.|+++..+..++...
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999933 678899998888777554
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=3.6e-17 Score=193.05 Aligned_cols=245 Identities=13% Similarity=0.047 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhh--hhh
Q psy17691 4 LAIDTYRRAIELQPN--FPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIR--IGY 79 (673)
Q Consensus 4 eAi~~~~kAL~l~P~--~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~--l~~ 79 (673)
.+...+.+++..+|. ++.+|+++|.++.. +++..+...+..+.. ..|+.... ++.
T Consensus 459 ~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~--------------------~~Pd~~~~L~lA~ 517 (987)
T PRK09782 459 DNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ--------------------RQPDAWQHRAVAY 517 (987)
T ss_pred hhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH--------------------hCCchHHHHHHHH
Confidence 355666777777788 89999999999886 554444332222211 11222111 122
Q ss_pred hhhhcCCCcccccccccCCCCchhHHHHHH--HhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691 80 VSSDFGNHPTSHLMQSVPGMHNKSRVEIFC--YALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLA 157 (673)
Q Consensus 80 ~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~--~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg 157 (673)
.+...++. ..++..+. ....|.+...+..+..+...|++++|+.+|+++++.+|++...+..++
T Consensus 518 al~~~Gr~--------------eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La 583 (987)
T PRK09782 518 QAYQVEDY--------------ATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLH 583 (987)
T ss_pred HHHHCCCH--------------HHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 22233322 22222221 122334444444455666788888888888888888888877777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17691 158 NIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGA 237 (673)
Q Consensus 158 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA 237 (673)
..+...|++++|+..|+++++++|+ ..++.++|.++.+.|++++|+..|+++++++|+++.++.++|.++.++|++++|
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 7777778888888888888888886 888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHH
Q psy17691 238 LQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLL 284 (673)
Q Consensus 238 ~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~ 284 (673)
++.|+++++++|+++.++.++|.++...|+++ ++++|++.......+
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g 718 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTP 718 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhh
Confidence 88888888888888888888888888888877 677888776665544
No 16
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=4.8e-17 Score=184.41 Aligned_cols=212 Identities=15% Similarity=0.026 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhh
Q psy17691 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVS 81 (673)
Q Consensus 2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~ 81 (673)
+++|+.+|++|++++|+++.+|..+|.+|...++.... ...+++++|..
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~----------~~~~~~~~A~~--------------------- 325 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIF----------DKQNAMIKAKE--------------------- 325 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCc----------ccchHHHHHHH---------------------
Confidence 57899999999999999999999999998876531100 01111122111
Q ss_pred hhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691 82 SDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIIS-VLLLIQVSEAEECYNTALRLCPTHADSLNNLANIK 160 (673)
Q Consensus 82 ~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~ 160 (673)
....++.++|++..++..++. +...|++++|+.+|+++++++|+++.+++.+|.++
T Consensus 326 -----------------------~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 382 (553)
T PRK12370 326 -----------------------HAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNL 382 (553)
T ss_pred -----------------------HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 111245577888888865554 45689999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691 161 REQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ-PSFADAYSNMGNTLKEMQDIQGALQ 239 (673)
Q Consensus 161 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~ 239 (673)
...|++++|+..++++++++|.+...+..++.+++..|++++|+..++++++.. |+++.++.++|.++..+|++++|++
T Consensus 383 ~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~ 462 (553)
T PRK12370 383 FMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARK 462 (553)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999998887777878888999999999999999875 7788899999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691 240 CYSRAIQINPGFADAHSNLASIHKDSGK 267 (673)
Q Consensus 240 ~~~~Al~l~p~~~~a~~~La~~~~~~g~ 267 (673)
.+++.....|+...++..++..|...|+
T Consensus 463 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 463 LTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 9999888888888888888888887775
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.77 E-value=1.1e-16 Score=174.07 Aligned_cols=252 Identities=15% Similarity=0.120 Sum_probs=180.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhh
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV 80 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~ 80 (673)
++++|+..|+++++.+|++..++..+|.++...|+++.+...+..+.. ........ .......++.+
T Consensus 50 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~~~~----------~~~~~~~La~~ 116 (389)
T PRK11788 50 QPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS---RPDLTREQ----------RLLALQELGQD 116 (389)
T ss_pred ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc---CCCCCHHH----------HHHHHHHHHHH
Confidence 478999999999999999999999999999999975554444332211 00000000 00001222333
Q ss_pred hhhcCCCcccccccccCCCCchhHHHHHH--HhcCCCChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HH
Q psy17691 81 SSDFGNHPTSHLMQSVPGMHNKSRVEIFC--YALSPDDGTTFSY-IISVLLLIQVSEAEECYNTALRLCPTHA-----DS 152 (673)
Q Consensus 81 ~~~l~~~~~a~~~~~~~~~~~~~a~~~~~--~~l~p~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a 152 (673)
+...++. ..+...+. ....|.+..++.. +..+...|++++|++.++++++..|.+. ..
T Consensus 117 ~~~~g~~--------------~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 182 (389)
T PRK11788 117 YLKAGLL--------------DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHF 182 (389)
T ss_pred HHHCCCH--------------HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3333322 12222221 2234555555533 4455568899999999999988877653 25
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc
Q psy17691 153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF-ADAYSNMGNTLKEM 231 (673)
Q Consensus 153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~lg~~~~~~ 231 (673)
+..+|.++..+|++++|+..|+++++.+|++..++..+|.++...|++++|++.++++++.+|.+ ..++..++.+|...
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 66788888899999999999999999999888889999999999999999999999999888876 45678888999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHH
Q psy17691 232 QDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAY 280 (673)
Q Consensus 232 g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~ 280 (673)
|++++|+..++++++..|+.... ..++.++.+.|+++ ++..|++....
T Consensus 263 g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 263 GDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred CCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 99999999999999988876544 78888888888887 55667766544
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.77 E-value=9.1e-17 Score=197.04 Aligned_cols=186 Identities=18% Similarity=0.192 Sum_probs=152.4
Q ss_pred chhHHHHH--HHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHc
Q psy17691 101 NKSRVEIF--CYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHAD--------------SLNNLANIKREQ 163 (673)
Q Consensus 101 ~~~a~~~~--~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------a~~~Lg~~~~~~ 163 (673)
..+++..+ .+..+|++..++..+ ..+...|++++|+.+|+++++.+|++.. ....+|.++...
T Consensus 285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~ 364 (1157)
T PRK11447 285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA 364 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC
Confidence 34455554 456788888877555 4555689999999999999999887643 123557888899
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH----------------
Q psy17691 164 GYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT---------------- 227 (673)
Q Consensus 164 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~---------------- 227 (673)
|++++|+..|+++++++|++..++..+|.++..+|++++|++.|+++++.+|++..++..++.+
T Consensus 365 g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 365 NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999987766555544
Q ss_pred --------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------ccc
Q psy17691 228 --------------------------LKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFI 272 (673)
Q Consensus 228 --------------------------~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l 272 (673)
+...|++++|+++|+++++++|+++.+++.++.++...|+++ ++.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 446789999999999999999999999999999999999987 567
Q ss_pred CCCCHHHHHHHHHH
Q psy17691 273 RTDLNSAYFWLLLL 286 (673)
Q Consensus 273 ~p~~~~a~~~l~~~ 286 (673)
+|+++++++.+++.
T Consensus 525 ~P~~~~~~~a~al~ 538 (1157)
T PRK11447 525 KPNDPEQVYAYGLY 538 (1157)
T ss_pred CCCCHHHHHHHHHH
Confidence 89999888777643
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=1.2e-16 Score=188.71 Aligned_cols=223 Identities=14% Similarity=0.062 Sum_probs=178.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHH--------------HHHHHHHcCChhhhcCChhhHH
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCN--------------LANALKEKGQINVLHKPPYKYT 66 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~--------------la~~l~~~g~~~~A~~~~~~~~ 66 (673)
+.++|+..|.+++...|++. .+..+|.++...|+.+.+...+. +|.++...|+.++|.. .++
T Consensus 491 ~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~-~l~-- 566 (987)
T PRK09782 491 LPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDR-WLQ-- 566 (987)
T ss_pred CcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHH-HHH--
Confidence 35689999999999999864 36666777777776444443333 2333333333333221 111
Q ss_pred hhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHh
Q psy17691 67 RELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRL 145 (673)
Q Consensus 67 ~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~ 145 (673)
..+..+|+....+..+ ......|++++|+..|++++++
T Consensus 567 -----------------------------------------qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l 605 (987)
T PRK09782 567 -----------------------------------------QAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI 605 (987)
T ss_pred -----------------------------------------HHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 1233445554444332 2334569999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691 146 CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225 (673)
Q Consensus 146 ~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 225 (673)
+|+ ..++.++|.++.+.|++++|+..|+++++++|+++.+++++|.++...|++++|++.|+++++++|+++.++.++|
T Consensus 606 ~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA 684 (987)
T PRK09782 606 APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLA 684 (987)
T ss_pred CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 997 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 226 ~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
.++..+|++++|+.+|+++++++|++..+....|.+.....+++
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~ 728 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFR 728 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999988888877665544
No 20
>KOG0547|consensus
Probab=99.76 E-value=3e-17 Score=170.12 Aligned_cols=275 Identities=19% Similarity=0.174 Sum_probs=207.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY 65 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~ 65 (673)
+|++||++|++||++.|+.+-.|.|++-||...|+ |++..+++.++.++...|+++++.....-.
T Consensus 130 kY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ 209 (606)
T KOG0547|consen 130 KYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVL 209 (606)
T ss_pred cHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHH
Confidence 58999999999999999999999999999999996 899999999999999999999885421111
Q ss_pred HhhcC--CCc-------------------------------hhhhhhhhhhcCCCcccc--------------ccc---c
Q psy17691 66 TRELA--PGN-------------------------------RIRIGYVSSDFGNHPTSH--------------LMQ---S 95 (673)
Q Consensus 66 ~~~l~--p~~-------------------------------~~~l~~~~~~l~~~~~a~--------------~~~---~ 95 (673)
.+.-. ... ...+...+..+....... .+. .
T Consensus 210 ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~ 289 (606)
T KOG0547|consen 210 CILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEK 289 (606)
T ss_pred HHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHh
Confidence 11000 000 000000000000000000 000 0
Q ss_pred cCCCCchhHHHHHHH-------hcCCC--C------hhHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691 96 VPGMHNKSRVEIFCY-------ALSPD--D------GTTFSYIIS-VLLLIQVSEAEECYNTALRLCPTHADSLNNLANI 159 (673)
Q Consensus 96 ~~~~~~~~a~~~~~~-------~l~p~--~------~~~~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~ 159 (673)
.....+..+.+.+.. ....+ + ..++.+.+. ++..|++..|...++++++++|.+...|..+|.+
T Consensus 290 ~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~ 369 (606)
T KOG0547|consen 290 GLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAA 369 (606)
T ss_pred hCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHH
Confidence 000011111111100 01111 1 222322233 3347899999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691 160 KREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ 239 (673)
Q Consensus 160 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~ 239 (673)
|.++++-++-...|++|..++|+++++|+..|.+++-++++++|+.-|+++++++|++..++..++.+.+++++++++..
T Consensus 370 y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~ 449 (606)
T KOG0547|consen 370 YADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMK 449 (606)
T ss_pred HhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCC
Q psy17691 240 CYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTD 275 (673)
Q Consensus 240 ~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~ 275 (673)
.|+.+.+..|+.++.+...|.++.++++++ +.+.|.
T Consensus 450 ~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 450 TFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999987 566666
No 21
>KOG1155|consensus
Probab=99.75 E-value=1.1e-16 Score=165.00 Aligned_cols=268 Identities=17% Similarity=0.187 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------C--CcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCC
Q psy17691 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ--------P--NFPDAYCNLANALKEKGQINVLHKPPYKYTRELAP 71 (673)
Q Consensus 2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~--------~--~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p 71 (673)
.++|++.|.+++...|-+..||..|+.+...... + ..-..-+-++.++.+....+++...........-|
T Consensus 180 ~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~ 259 (559)
T KOG1155|consen 180 LSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFP 259 (559)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4679999999999999999999999887654432 2 12222333445555544444443322211111122
Q ss_pred Cch---hhhhhhhhhcCCCccccccc-------------------ccCCCCchhH---HHHHHHhcCCCChhHHHHHHHH
Q psy17691 72 GNR---IRIGYVSSDFGNHPTSHLMQ-------------------SVPGMHNKSR---VEIFCYALSPDDGTTFSYIISV 126 (673)
Q Consensus 72 ~~~---~~l~~~~~~l~~~~~a~~~~-------------------~~~~~~~~~a---~~~~~~~l~p~~~~~~~~~~~~ 126 (673)
+.. ...+.+.-...+.+.+...- .+--...+.. ++.....++.-.++....++++
T Consensus 260 ~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNY 339 (559)
T KOG1155|consen 260 NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANY 339 (559)
T ss_pred ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhH
Confidence 221 12222222222222211000 0000001111 1222333444455555666666
Q ss_pred HH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691 127 LL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALL 205 (673)
Q Consensus 127 ~~-~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 205 (673)
+. .++.++|+.+|++|++++|+...+|..+|.=|.++++...|++.|++|++++|.+..+|+.||+.|...+...=|+-
T Consensus 340 YSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLy 419 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALY 419 (559)
T ss_pred HHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHH
Confidence 66 67999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 206 HYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 206 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
+|++|+++.|+++..|..||.||.++++.++|+++|++|+.....+..++..||.+|.++++..
T Consensus 420 YfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 420 YFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999999999999999998876
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=9.8e-16 Score=180.13 Aligned_cols=283 Identities=13% Similarity=0.050 Sum_probs=199.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY 65 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~ 65 (673)
++++|+..|+++++++|+++.++..+|.++...|+ |+.+. ++.+|.++...|+.++|.. .++.
T Consensus 64 ~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~-~l~~ 141 (765)
T PRK10049 64 QWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELR-AMTQ 141 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHH-HHHH
Confidence 47899999999999999999999999999999996 77888 9999999999999999886 6777
Q ss_pred HhhcCCCch---hhhhhhhhhcCCCcccc-cccccCC------------------------C----Cc---hhHHHHHHH
Q psy17691 66 TRELAPGNR---IRIGYVSSDFGNHPTSH-LMQSVPG------------------------M----HN---KSRVEIFCY 110 (673)
Q Consensus 66 ~~~l~p~~~---~~l~~~~~~l~~~~~a~-~~~~~~~------------------------~----~~---~~a~~~~~~ 110 (673)
+..+.|++. ..++.++...+....+. .+..... . .. ..+++.+..
T Consensus 142 al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 142 ALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence 888888774 23444444333322111 0000000 0 00 122322211
Q ss_pred h-----cCCCChhHHH-----HHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17691 111 A-----LSPDDGTTFS-----YIISVLLLIQVSEAEECYNTALRLCPTH-ADSLNNLANIKREQGYIEEATRLYLKALEV 179 (673)
Q Consensus 111 ~-----l~p~~~~~~~-----~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~ 179 (673)
. .+|+....+. .++.++..|++++|+..|+++++..+.. ..+...+|.+|..+|++++|+..|+++++.
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 1 2233222211 1345567788888888888888875432 223444688888888888888888888887
Q ss_pred CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHH
Q psy17691 180 FPEF----AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS---------------FADAYSNMGNTLKEMQDIQGALQC 240 (673)
Q Consensus 180 ~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~eA~~~ 240 (673)
+|.+ ......++.++.++|++++|++.++++.+..|. ...++..+|.++...|++++|++.
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7765 356677777788888888888888888887662 134667788888888888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHHH
Q psy17691 241 YSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLLL 285 (673)
Q Consensus 241 ~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~~ 285 (673)
+++++...|++..++..+|.++...|+++ +.++|++...++.++.
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~ 435 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAW 435 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 88888888888888888888888888876 6778888777766654
No 23
>KOG1125|consensus
Probab=99.71 E-value=2.9e-16 Score=166.69 Aligned_cols=232 Identities=19% Similarity=0.227 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhHH
Q psy17691 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKYT 66 (673)
Q Consensus 2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~ 66 (673)
+.+|.-+|+.|++.+|+++++|..||.+....++ |++-+++..+|..|...|.-.+|.+...+.+
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi 380 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWI 380 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4689999999999999999999999999999885 7888888888888888887777765443333
Q ss_pred hhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691 67 RELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLC 146 (673)
Q Consensus 67 ~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 146 (673)
..-.+.........-...+ .. ........+..-.+.|-.+....
T Consensus 381 ~~~p~y~~l~~a~~~~~~~------------------------------~~------~s~~~~~~l~~i~~~fLeaa~~~ 424 (579)
T KOG1125|consen 381 RNKPKYVHLVSAGENEDFE------------------------------NT------KSFLDSSHLAHIQELFLEAARQL 424 (579)
T ss_pred HhCccchhccccCcccccc------------------------------CC------cCCCCHHHHHHHHHHHHHHHHhC
Confidence 3221111000000000000 00 00000113445556777777888
Q ss_pred C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy17691 147 P--THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM 224 (673)
Q Consensus 147 p--~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 224 (673)
| .+++++..||.+|...|+|++|+.||+.||+.+|++...|+.||.++....+.++|+..|++|+++.|....+++||
T Consensus 425 ~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNl 504 (579)
T KOG1125|consen 425 PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNL 504 (579)
T ss_pred CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhh
Confidence 8 78999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCCc
Q psy17691 225 GNTLKEMQDIQGALQCYSRAIQINPG----------FADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 225 g~~~~~~g~~~eA~~~~~~Al~l~p~----------~~~a~~~La~~~~~~g~~~ 269 (673)
|..|+.+|.|+||.++|-.||.+.+. +..+|..|-.++...++.+
T Consensus 505 gIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 505 GISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 99999999999999999999998654 1357888888888888876
No 24
>KOG1173|consensus
Probab=99.70 E-value=2e-15 Score=159.67 Aligned_cols=239 Identities=17% Similarity=0.182 Sum_probs=172.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY 65 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~ 65 (673)
+|.+..+..+..++.+|-+..++...--++..+|+ |+.+..|+..|.-|...|++.+|.+ ++.+
T Consensus 259 ~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARr-y~SK 337 (611)
T KOG1173|consen 259 RFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARR-YFSK 337 (611)
T ss_pred hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHH-HHHH
Confidence 47788899999999999998877554448888886 7778888888888887777777654 3333
Q ss_pred HhhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHH
Q psy17691 66 TRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALR 144 (673)
Q Consensus 66 ~~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~ 144 (673)
+..++|..+.+|... ..+...++.++|+.+|..|-+
T Consensus 338 -------------------------------------------at~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar 374 (611)
T KOG1173|consen 338 -------------------------------------------ATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR 374 (611)
T ss_pred -------------------------------------------HhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH
Confidence 334556666666443 334446777778888888777
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CC
Q psy17691 145 LCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP-------SF 217 (673)
Q Consensus 145 ~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-------~~ 217 (673)
+-|........+|.-|.+.++++-|.+.|.+|+.+.|.++-+++.+|.+.+..+.|.+|..+|+++++.-+ ..
T Consensus 375 l~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w 454 (611)
T KOG1173|consen 375 LMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFW 454 (611)
T ss_pred hccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccch
Confidence 77777777777777777777888888888888888888877777788877777778888887777773311 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHH
Q psy17691 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWL 283 (673)
Q Consensus 218 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l 283 (673)
...+.|||.++.+++++++|+.+|+++|.+.|.+..++..+|.+|..+|+++ |.++|++..+--.|
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 3357778888888888888888888888888888888888888887777776 55666654443333
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.70 E-value=6.1e-15 Score=173.43 Aligned_cols=278 Identities=14% Similarity=0.079 Sum_probs=209.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY 65 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~ 65 (673)
++++|+..++++++.+|+++. +..+|.++...|+ |+...++..++.++...+..++|+... +.
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l-~~ 175 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI-DD 175 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH-Hh
Confidence 478999999999999999999 9999999999996 788888888999888888877665322 21
Q ss_pred HhhcCCCc----------h-hh-------------------hh---hhhhhcCCCcccc--c--------ccccCCCCch
Q psy17691 66 TRELAPGN----------R-IR-------------------IG---YVSSDFGNHPTSH--L--------MQSVPGMHNK 102 (673)
Q Consensus 66 ~~~l~p~~----------~-~~-------------------l~---~~~~~l~~~~~a~--~--------~~~~~~~~~~ 102 (673)
... .|+. . .. +. .+.......+... . ..-.......
T Consensus 176 ~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 176 ANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 111 1110 0 00 00 0000000000000 0 0001112334
Q ss_pred hHHHHHHHhc--C---CCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691 103 SRVEIFCYAL--S---PDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTH----ADSLNNLANIKREQGYIEEATRLY 173 (673)
Q Consensus 103 ~a~~~~~~~l--~---p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~Lg~~~~~~g~~~eA~~~~ 173 (673)
+++..+...+ . |+....+ .+..++.+|++++|+.+|+++++.+|.+ ......++.++.++|++++|+..+
T Consensus 255 eA~~~~~~ll~~~~~~P~~a~~~-la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPWAQRW-VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHhhccCCCCCHHHHHH-HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 4555553333 2 2222222 3566778999999999999999988876 457788888999999999999999
Q ss_pred HHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691 174 LKALEVFPE---------------FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGAL 238 (673)
Q Consensus 174 ~~al~~~p~---------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 238 (673)
+++.+..|. ...++..++.++...|++++|++.++++++..|.+..++..+|.++...|++++|+
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~ 413 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAE 413 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 999998773 24577899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHH
Q psy17691 239 QCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFW 282 (673)
Q Consensus 239 ~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~ 282 (673)
+.++++++++|++..+++.++.++...|+++ ++..|+++.+...
T Consensus 414 ~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 414 NELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999999999999998 7789999986543
No 26
>KOG1155|consensus
Probab=99.69 E-value=1.5e-15 Score=156.74 Aligned_cols=237 Identities=19% Similarity=0.193 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhh
Q psy17691 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVS 81 (673)
Q Consensus 2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~ 81 (673)
+++|+..|+...+.+|-..+-.-...++++-+.+ .. .+-.+|.....-. +..|+....++.-|
T Consensus 278 fD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~--~s-kLs~LA~~v~~id--------------KyR~ETCCiIaNYY 340 (559)
T KOG1155|consen 278 FDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND--KS-KLSYLAQNVSNID--------------KYRPETCCIIANYY 340 (559)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh--hH-HHHHHHHHHHHhc--------------cCCccceeeehhHH
Confidence 6677777777777777666655555666555542 11 1111222221111 12233333333333
Q ss_pred hhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691 82 SDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIIS-VLLLIQVSEAEECYNTALRLCPTHADSLNNLAN 158 (673)
Q Consensus 82 ~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~ 158 (673)
+..+. .+.++..+ ++.++|....+|.+.|. +..+++...|++.|++|++++|.+..+|+.||+
T Consensus 341 Slr~e--------------HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 341 SLRSE--------------HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQ 406 (559)
T ss_pred HHHHh--------------HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhH
Confidence 33222 23445544 55678999999977655 667999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691 159 IKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGAL 238 (673)
Q Consensus 159 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 238 (673)
.|.-++-..=|+-+|++|++..|+++..|..||.+|.++++.++|+++|++++.....+..++..||.+|.++++.++|.
T Consensus 407 aYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-------hCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 239 QCYSRAIQ-------INPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 239 ~~~~~Al~-------l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
.+|++.++ .+|.-..+..-|+.-+.+.++++
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~ 524 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFD 524 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchH
Confidence 99999998 45556677777999999988887
No 27
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.69 E-value=1.1e-15 Score=145.65 Aligned_cols=149 Identities=21% Similarity=0.250 Sum_probs=141.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691 121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL 200 (673)
Q Consensus 121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 200 (673)
.++..++..|++..|...+++||+.+|++..+|..++.+|...|+.+.|.+.|++|++++|++.++++|.|..++.+|++
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 201 TDALLHYKEAIRI--QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 201 ~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
++|...|++|+.. .+..+..+.|+|.|..++|+.+.|.++|+++++++|+++.....++..+.+.|++.
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 9999999999985 45567899999999999999999999999999999999999999999999999986
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.69 E-value=6.7e-15 Score=146.32 Aligned_cols=156 Identities=22% Similarity=0.228 Sum_probs=139.8
Q ss_pred CCChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHH
Q psy17691 114 PDDGTTFSY-IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVF--PEFAAAHSNL 190 (673)
Q Consensus 114 p~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l 190 (673)
|++...+.. +..+...|++++|+..++++++..|++..++.++|.++...|++++|+..++++++.. +.....+.++
T Consensus 62 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 141 (234)
T TIGR02521 62 PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENA 141 (234)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHH
Confidence 444555543 4455668999999999999999999999999999999999999999999999999864 5567889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 191 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
|.++...|++++|...++++++.+|++...+..+|.++...|++++|..+++++++..|.+...+..++.++...|+.+
T Consensus 142 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (234)
T TIGR02521 142 GLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVA 220 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999988999888899988888765
No 29
>KOG0547|consensus
Probab=99.69 E-value=2.9e-15 Score=155.54 Aligned_cols=177 Identities=21% Similarity=0.218 Sum_probs=150.4
Q ss_pred HHhcCCCChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy17691 109 CYALSPDDGTTF-SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH 187 (673)
Q Consensus 109 ~~~l~p~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 187 (673)
.+.++|.+...| ..+..+...++.++-...|.+|.+++|+++++|+..|++++-++++++|+..|++++.++|++..++
T Consensus 352 ~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 352 AIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY 431 (606)
T ss_pred HHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 566777777755 5556666788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHH
Q psy17691 188 SNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG------FADAHSNLASI 261 (673)
Q Consensus 188 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~------~~~a~~~La~~ 261 (673)
..++.+++++++++++...|+.+++..|+.++++...|.++..++++++|++.|.+|+++.|. ++..+.+-|.+
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l 511 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL 511 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh
Confidence 999999999999999999999999999999999999999999999999999999999999998 55555555555
Q ss_pred HHHc-CCCc---------cccCCCCHHHHHHHHH
Q psy17691 262 HKDS-GKRG---------FFIRTDLNSAYFWLLL 285 (673)
Q Consensus 262 ~~~~-g~~~---------l~l~p~~~~a~~~l~~ 285 (673)
..++ +++. ++++|....++..+|-
T Consensus 512 ~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq 545 (606)
T KOG0547|consen 512 VLQWKEDINQAENLLRKAIELDPKCEQAYETLAQ 545 (606)
T ss_pred hhchhhhHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 4443 2222 7889988888877773
No 30
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.67 E-value=1.5e-15 Score=140.97 Aligned_cols=127 Identities=18% Similarity=0.115 Sum_probs=119.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691 136 EECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP 215 (673)
Q Consensus 136 ~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 215 (673)
..+|+++++++|++ +..+|.++...|++++|+.+|++++..+|.+..+|+++|.++...|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46799999999885 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691 216 SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS 265 (673)
Q Consensus 216 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~ 265 (673)
+++.+++++|.++..+|++++|+..|++++++.|+++..+.+++.+....
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876554
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=1e-15 Score=158.81 Aligned_cols=237 Identities=21% Similarity=0.218 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhh
Q psy17691 1 LIDLAIDTYRRAIEL--QPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIG 78 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l--~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~ 78 (673)
++++|++.+++.+.. .|++...|..+|.+...+++.+.+...+......... .+.....+.
T Consensus 23 ~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-----------------~~~~~~~l~ 85 (280)
T PF13429_consen 23 DYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-----------------NPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-----------------ccccccccc
Confidence 367888888665544 4888888888888888888766555444322211100 011111111
Q ss_pred hhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH
Q psy17691 79 YVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLC--PTHADSLN 154 (673)
Q Consensus 79 ~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~ 154 (673)
.+ ...++. .++.... .....++.......+..+...++++++...++++.... +.++..+.
T Consensus 86 ~l-~~~~~~--------------~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 150 (280)
T PF13429_consen 86 QL-LQDGDP--------------EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWL 150 (280)
T ss_dssp -----------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHH
T ss_pred cc-cccccc--------------cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHH
Confidence 11 111111 1111111 11112222222244455677899999999999988765 67889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy17691 155 NLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDI 234 (673)
Q Consensus 155 ~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 234 (673)
.+|.++.+.|+.++|+.+|+++++.+|++..++..++.++...|+++++.+.++...+..|+++..+..+|.++..+|++
T Consensus 151 ~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 151 ALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY 230 (280)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999998888888899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 235 QGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 235 ~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
++|+.+|+++++.+|+++..+.++|.++...|+.+
T Consensus 231 ~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 231 EEALEYLEKALKLNPDDPLWLLAYADALEQAGRKD 265 (280)
T ss_dssp HHHHHHHHHHHHHSTT-HHHHHHHHHHHT------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999987
No 32
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.65 E-value=2.9e-14 Score=148.92 Aligned_cols=155 Identities=15% Similarity=0.061 Sum_probs=97.2
Q ss_pred hcCCCChhHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy17691 111 ALSPDDGTTFSYIIS-VLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSN 189 (673)
Q Consensus 111 ~l~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 189 (673)
.++|++..+|...+. +...|++++|+..|+++++++|++..++.++|.++...|++++|++.++++++.+|+++....
T Consensus 92 ~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~- 170 (296)
T PRK11189 92 ALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL- 170 (296)
T ss_pred HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-
Confidence 356777777755544 445788888888888888888888888888888888888888888888888888887763211
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH--HHHH----HHHHHhCCCCHHHHHHHHHHHH
Q psy17691 190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGA--LQCY----SRAIQINPGFADAHSNLASIHK 263 (673)
Q Consensus 190 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA--~~~~----~~Al~l~p~~~~a~~~La~~~~ 263 (673)
...+....+++++|+..+++++...+.. .|. .+.++..+|+..++ .+.+ +++.++.|...++|++||.++.
T Consensus 171 ~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~ 247 (296)
T PRK11189 171 WLYLAESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYL 247 (296)
T ss_pred HHHHHHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 1123345667788888776665443221 121 24444445554332 2111 2223455566667777777777
Q ss_pred HcCCCc
Q psy17691 264 DSGKRG 269 (673)
Q Consensus 264 ~~g~~~ 269 (673)
..|+++
T Consensus 248 ~~g~~~ 253 (296)
T PRK11189 248 SLGDLD 253 (296)
T ss_pred HCCCHH
Confidence 777765
No 33
>PRK12370 invasion protein regulator; Provisional
Probab=99.65 E-value=1.1e-14 Score=165.25 Aligned_cols=167 Identities=17% Similarity=0.099 Sum_probs=149.6
Q ss_pred hHHHHH--HHhcCCCChhHHHHHHHHH----------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691 103 SRVEIF--CYALSPDDGTTFSYIISVL----------LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEAT 170 (673)
Q Consensus 103 ~a~~~~--~~~l~p~~~~~~~~~~~~~----------~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~ 170 (673)
.+++.+ ++.++|++..++..++.++ ..+++++|+..++++++++|+++.++..+|.++..+|++++|+
T Consensus 279 ~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~ 358 (553)
T PRK12370 279 QALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGS 358 (553)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Confidence 344444 5678899988886554322 1245899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Q psy17691 171 RLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN-P 249 (673)
Q Consensus 171 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~-p 249 (673)
..|+++++++|+++.+++++|.++...|++++|+..++++++++|.++..+..++.++...|++++|+.+++++++.. |
T Consensus 359 ~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p 438 (553)
T PRK12370 359 LLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQ 438 (553)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999998888788888888999999999999999885 8
Q ss_pred CCHHHHHHHHHHHHHcCCCc
Q psy17691 250 GFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 250 ~~~~a~~~La~~~~~~g~~~ 269 (673)
+++.++.++|.++..+|+++
T Consensus 439 ~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 439 DNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred cCHHHHHHHHHHHHhCCCHH
Confidence 88999999999999999987
No 34
>KOG1173|consensus
Probab=99.65 E-value=8.7e-15 Score=154.81 Aligned_cols=210 Identities=18% Similarity=0.283 Sum_probs=166.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchh
Q psy17691 11 RAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRI 75 (673)
Q Consensus 11 kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~ 75 (673)
+.++..|+.+-.|+..|..|...|+ +.++.+|..+|..+...++.++|...++..++
T Consensus 303 ~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar-------- 374 (611)
T KOG1173|consen 303 KLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR-------- 374 (611)
T ss_pred HHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--------
Confidence 4455667777777777777777665 44555555556666555555555432222211
Q ss_pred hhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCC-ChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691 76 RIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPD-DGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLN 154 (673)
Q Consensus 76 ~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 154 (673)
+-+. ....++.+..+..+++++-|...|.+|+.+.|+++-+..
T Consensus 375 ------------------------------------l~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~ 418 (611)
T KOG1173|consen 375 ------------------------------------LMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLH 418 (611)
T ss_pred ------------------------------------hccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhh
Confidence 1222 223445556677799999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691 155 NLANIKREQGYIEEATRLYLKALEVFP-------EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227 (673)
Q Consensus 155 ~Lg~~~~~~g~~~eA~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 227 (673)
.+|.+.+..+.|.+|..+|+++++.-+ .....+.|||.++.+++++++|+.+|+++|.+.|.++.++..+|.+
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~i 498 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYI 498 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 999999999999999999999995422 2356799999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691 228 LKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD 264 (673)
Q Consensus 228 ~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~ 264 (673)
|..+|+++.|+++|.++|.++|++.-+-..|+.+...
T Consensus 499 y~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 499 YHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999999999999999999999998887777766544
No 35
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.65 E-value=7.4e-14 Score=151.77 Aligned_cols=139 Identities=17% Similarity=0.155 Sum_probs=125.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHH
Q psy17691 123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF-AAAHSNLASVLQQQGKLT 201 (673)
Q Consensus 123 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~ 201 (673)
+..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|++.++++++.+|.+ ..++..++.+|...|+++
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 3455679999999999999999999999999999999999999999999999999999887 467889999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691 202 DALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIH 262 (673)
Q Consensus 202 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~ 262 (673)
+|+..++++++.+|+... +..+|.++.+.|++++|+..++++++..|++......++..+
T Consensus 267 ~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 267 EGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 999999999999998754 489999999999999999999999999999876654444433
No 36
>KOG0624|consensus
Probab=99.64 E-value=2.2e-14 Score=143.04 Aligned_cols=281 Identities=14% Similarity=0.150 Sum_probs=205.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY 65 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~ 65 (673)
++.+|+..|-.|++.||++..+++..|.+|..+|+ |++..+....|.++..+|++++|.. .+.+
T Consensus 53 Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~-DF~~ 131 (504)
T KOG0624|consen 53 QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEA-DFDQ 131 (504)
T ss_pred hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHH-HHHH
Confidence 47899999999999999999999999999999996 8889999999999999999999875 5666
Q ss_pred HhhcCCCchhhh------hhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHH-HHHHHHHHcCCHHHHH
Q psy17691 66 TRELAPGNRIRI------GYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTF-SYIISVLLLIQVSEAE 136 (673)
Q Consensus 66 ~~~l~p~~~~~l------~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~-~~~~~~~~~g~~~~A~ 136 (673)
.+.-+|++.... ..+... .....++...........+++.. .+.+.|-++..+ ..+.++...|+...|+
T Consensus 132 vl~~~~s~~~~~eaqskl~~~~e~--~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI 209 (504)
T KOG0624|consen 132 VLQHEPSNGLVLEAQSKLALIQEH--WVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAI 209 (504)
T ss_pred HHhcCCCcchhHHHHHHHHhHHHH--HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHH
Confidence 666666442111 110000 00011122222222334444444 345666666665 5566777899999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH---H---------HHHHHHcCCHHHHH
Q psy17691 137 ECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSN---L---------ASVLQQQGKLTDAL 204 (673)
Q Consensus 137 ~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~---l---------a~~~~~~g~~~eA~ 204 (673)
.-++.+-++..++.+.++.++.+++..|+.+.++...++.|+++|++-.++-. + +.-....++|.+++
T Consensus 210 ~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cl 289 (504)
T KOG0624|consen 210 HDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECL 289 (504)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999998543321 1 22234567777778
Q ss_pred HHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cc
Q psy17691 205 LHYKEAIRIQPSFAD----AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FF 271 (673)
Q Consensus 205 ~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~ 271 (673)
+.+++.++.+|..+. ....+..|+..-|++.+|++.+.++|+++|++.+++...+.+|.....|+ .+
T Consensus 290 e~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 290 EAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 888888887777443 33446677778888888888888888888888888888888877766665 56
Q ss_pred cCCCCHHHHHHHH
Q psy17691 272 IRTDLNSAYFWLL 284 (673)
Q Consensus 272 l~p~~~~a~~~l~ 284 (673)
+++++..+.-.+-
T Consensus 370 ~n~sn~~~reGle 382 (504)
T KOG0624|consen 370 LNESNTRAREGLE 382 (504)
T ss_pred cCcccHHHHHHHH
Confidence 7777766554443
No 37
>PLN02789 farnesyltranstransferase
Probab=99.63 E-value=3.6e-14 Score=148.34 Aligned_cols=132 Identities=15% Similarity=0.105 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCH----HHHHH
Q psy17691 133 SEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ---GKL----TDALL 205 (673)
Q Consensus 133 ~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~eA~~ 205 (673)
++++.+++++++.+|++..+|..++.++...|++++|++++.++++.+|.+..+|+..+.++... |.+ +++++
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555443 111 34455
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691 206 HYKEAIRIQPSFADAYSNMGNTLKE----MQDIQGALQCYSRAIQINPGFADAHSNLASIHKD 264 (673)
Q Consensus 206 ~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~ 264 (673)
+..++|+++|++..+|+.++.++.. +++..+|+..+.++++.+|.+..+..-|+.+|..
T Consensus 205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 5555555555555555555555554 2334445555555555555555555555555543
No 38
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.63 E-value=2.9e-14 Score=136.00 Aligned_cols=159 Identities=25% Similarity=0.224 Sum_probs=135.5
Q ss_pred hcCCCChhHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHH
Q psy17691 111 ALSPDDGTTFSYIISVL-LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV--FPEFAAAH 187 (673)
Q Consensus 111 ~l~p~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~ 187 (673)
+.+|+...+|.....++ ..|+.+.|.+.|++|++++|++.++++|.|.-++.+|++++|...|++|+.. .+..+..+
T Consensus 63 ~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~ 142 (250)
T COG3063 63 EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTL 142 (250)
T ss_pred HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhh
Confidence 35677777775555444 4788999999999999999999999999999999999999999999999875 45567899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691 188 SNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267 (673)
Q Consensus 188 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~ 267 (673)
-|+|.|..+.|+.+.|.++|+++++++|+++.....++..+++.|++-.|..++++....-+-..+.+.-...+-...|+
T Consensus 143 eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd 222 (250)
T COG3063 143 ENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGD 222 (250)
T ss_pred hhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999887777667766666677777777
Q ss_pred Cc
Q psy17691 268 RG 269 (673)
Q Consensus 268 ~~ 269 (673)
-+
T Consensus 223 ~~ 224 (250)
T COG3063 223 RA 224 (250)
T ss_pred HH
Confidence 54
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.61 E-value=9e-14 Score=138.17 Aligned_cols=164 Identities=23% Similarity=0.238 Sum_probs=149.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691 121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL 200 (673)
Q Consensus 121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 200 (673)
..+..+...|++++|+..++++++.+|++..++..+|.++..+|++++|++.++++++..|.+..++.++|.++...|++
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 115 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY 115 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccH
Confidence 44556677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------
Q psy17691 201 TDALLHYKEAIRIQ--PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG--------- 269 (673)
Q Consensus 201 ~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~--------- 269 (673)
++|++.++++++.. +.....+.++|.++...|++++|..+|+++++.+|++..++..++.++...|+++
T Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 195 (234)
T TIGR02521 116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERY 195 (234)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999864 4567789999999999999999999999999999999999999999999999987
Q ss_pred cccCCCCHHHHHHHH
Q psy17691 270 FFIRTDLNSAYFWLL 284 (673)
Q Consensus 270 l~l~p~~~~a~~~l~ 284 (673)
+...|+++..+..++
T Consensus 196 ~~~~~~~~~~~~~~~ 210 (234)
T TIGR02521 196 QQTYNQTAESLWLGI 210 (234)
T ss_pred HHhCCCCHHHHHHHH
Confidence 445677666655443
No 40
>KOG2002|consensus
Probab=99.57 E-value=9.4e-13 Score=147.07 Aligned_cols=232 Identities=18% Similarity=0.218 Sum_probs=155.7
Q ss_pred CcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCc----hhhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HH
Q psy17691 37 NFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGN----RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CY 110 (673)
Q Consensus 37 ~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~----~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~ 110 (673)
-.++.+|.+|.++..+|++++|.. +|..+...++++ ...+|..+...+... .+..++ ..
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~-yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle--------------~s~~~fEkv~ 369 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFK-YYMESLKADNDNFVLPLVGLGQMYIKRGDLE--------------ESKFCFEKVL 369 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHH-HHHHHHccCCCCccccccchhHHHHHhchHH--------------HHHHHHHHHH
Confidence 345668888888888888888876 445555555554 134455554444322 222222 33
Q ss_pred hcCCCChhHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----C
Q psy17691 111 ALSPDDGTTFSYIISVLLLI-----QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV-----F 180 (673)
Q Consensus 111 ~l~p~~~~~~~~~~~~~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~-----~ 180 (673)
...|++......+++++... ..++|..+..++++..|.+.++|..+|.++....-+.. +..|.+|+.+ .
T Consensus 370 k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~ 448 (1018)
T KOG2002|consen 370 KQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGK 448 (1018)
T ss_pred HhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCC
Confidence 45677777777777766532 56778888888888888888888888887766554444 7777777743 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI-----QPSF-----ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250 (673)
Q Consensus 181 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~-----~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~ 250 (673)
+--++.++|+|..++..|++++|...+.+|+.. +++. ....+|+|.++..+++++.|.+.|+..++..|+
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~ 528 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG 528 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch
Confidence 333677788888888888888888888887766 1211 224678888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHH
Q psy17691 251 FADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLL 284 (673)
Q Consensus 251 ~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~ 284 (673)
+.+++..||......++.. +.++..++.++..+|
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G 571 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLG 571 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHH
Confidence 8888888875544444443 566777777776666
No 41
>PLN02789 farnesyltranstransferase
Probab=99.57 E-value=9.9e-14 Score=145.05 Aligned_cols=175 Identities=13% Similarity=0.072 Sum_probs=155.4
Q ss_pred cCCCChhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHH
Q psy17691 112 LSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG-YIEEATRLYLKALEVFPEFAAAHSN 189 (673)
Q Consensus 112 l~p~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~ 189 (673)
..++...++.+...++. .++.++|+..+.++++++|++..+|...+.++..+| ++++++..++++++.+|++..+|++
T Consensus 32 y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 32 YTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred eCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 34455566655555554 779999999999999999999999999999999998 6899999999999999999999999
Q ss_pred HHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-
Q psy17691 190 LASVLQQQGKL--TDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG- 266 (673)
Q Consensus 190 la~~~~~~g~~--~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g- 266 (673)
.+.++...|+. ++++.+++++++.+|++..+|..+|.++...|++++|++++.++++.+|.+..+|.+.+.+....|
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPL 191 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccc
Confidence 99999999874 788999999999999999999999999999999999999999999999999999999999987763
Q ss_pred --CCc-------------cccCCCCHHHHHHHHHH
Q psy17691 267 --KRG-------------FFIRTDLNSAYFWLLLL 286 (673)
Q Consensus 267 --~~~-------------l~l~p~~~~a~~~l~~~ 286 (673)
.++ +.++|+|.++|..++.+
T Consensus 192 l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~l 226 (320)
T PLN02789 192 LGGLEAMRDSELKYTIDAILANPRNESPWRYLRGL 226 (320)
T ss_pred cccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence 221 77899999998777643
No 42
>KOG1129|consensus
Probab=99.57 E-value=2.2e-14 Score=142.20 Aligned_cols=141 Identities=21% Similarity=0.250 Sum_probs=70.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17691 129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK 208 (673)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 208 (673)
++++++|.++|+.+++.+|.+.++...+|.-|+..++.+-|+.+|++.+++.-.+++.++|+|.+++..++++-++..|+
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 44555555555555555555555444444445555555555555555555555555555555555555555555555555
Q ss_pred HHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 209 EAIRIQPS---FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 209 ~al~~~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
+++....+ -+++|+|+|.+....|++.-|..+|+-||..++++.+++.||+.+-.+.|+.+
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDIL 446 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchH
Confidence 55444221 13445555555555555555555555555555555555555555544444443
No 43
>KOG1129|consensus
Probab=99.55 E-value=6.7e-14 Score=138.79 Aligned_cols=171 Identities=20% Similarity=0.144 Sum_probs=157.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17691 119 TFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG 198 (673)
Q Consensus 119 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 198 (673)
...+...|.+.++.+.|+..|.+.++..|.+...+..++.++..++++++|.++|+.+++.+|.+.++...+|.-|+..+
T Consensus 259 fllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~ 338 (478)
T KOG1129|consen 259 FLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDN 338 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCC
Confidence 33445666678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCCc------
Q psy17691 199 KLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP---GFADAHSNLASIHKDSGKRG------ 269 (673)
Q Consensus 199 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p---~~~~a~~~La~~~~~~g~~~------ 269 (673)
+.+-|+.+|++.+++.-.+++.++|+|.|+...++++-++.+|++|+.... .-.++|+|||.+....|++.
T Consensus 339 ~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcf 418 (478)
T KOG1129|consen 339 NPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCF 418 (478)
T ss_pred ChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHH
Confidence 999999999999999999999999999999999999999999999998743 34689999999999999987
Q ss_pred ---cccCCCCHHHHHHHHHHhhc
Q psy17691 270 ---FFIRTDLNSAYFWLLLLDAH 289 (673)
Q Consensus 270 ---l~l~p~~~~a~~~l~~~~~~ 289 (673)
+.-++++.+++.||+++...
T Consensus 419 rlaL~~d~~h~ealnNLavL~~r 441 (478)
T KOG1129|consen 419 RLALTSDAQHGEALNNLAVLAAR 441 (478)
T ss_pred HHHhccCcchHHHHHhHHHHHhh
Confidence 56789999999999987654
No 44
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.55 E-value=1.9e-13 Score=133.63 Aligned_cols=125 Identities=16% Similarity=0.159 Sum_probs=118.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q psy17691 129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVL-QQQGK--LTDALL 205 (673)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~eA~~ 205 (673)
.++.++++..++++++.+|++.+.|..+|.+|...|++++|+..|+++++++|++..++.++|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 447899999999999999999999999999999999999999999999999999999999999975 67787 599999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691 206 HYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253 (673)
Q Consensus 206 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~ 253 (673)
.++++++.+|++..+++++|..+.++|++++|+.+|+++++++|.+.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999887644
No 45
>KOG2002|consensus
Probab=99.55 E-value=8.1e-13 Score=147.56 Aligned_cols=258 Identities=17% Similarity=0.101 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhh
Q psy17691 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVS 81 (673)
Q Consensus 2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~ 81 (673)
++.|...|.-+++..|+|..++++.|.+.+..|++..+..+|..+... .....++..+.+|.++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~i----------------np~~~aD~rIgig~Cf 209 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRI----------------NPACKADVRIGIGHCF 209 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhc----------------CcccCCCccchhhhHH
Confidence 467777788888888888888888887777777655555555443221 1123345556777777
Q ss_pred hhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691 82 SDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVL----LLIQVSEAEECYNTALRLCPTHADSLNNLA 157 (673)
Q Consensus 82 ~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~----~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg 157 (673)
..++....+.. .-..+.+++|....++..++.+. ....+..+...+.++...++++|.+...|+
T Consensus 210 ~kl~~~~~a~~------------a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LA 277 (1018)
T KOG2002|consen 210 WKLGMSEKALL------------AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLA 277 (1018)
T ss_pred HhccchhhHHH------------HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Confidence 77665332211 11235567787766664444332 134678888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCC
Q psy17691 158 NIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF-ADAYSNMGNTLKEMQD 233 (673)
Q Consensus 158 ~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~ 233 (673)
.-++..|+|+.+......++...-.. ++.++.+|..|..+|++++|..+|.++++.++++ .-.++.+|+.|...|+
T Consensus 278 n~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d 357 (1018)
T KOG2002|consen 278 NHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD 357 (1018)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch
Confidence 88888888888888888888765333 5568888888888888888888888888888887 6677888888888888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-------------cccCCCCHHHHHHHHHHh
Q psy17691 234 IQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG-------------FFIRTDLNSAYFWLLLLD 287 (673)
Q Consensus 234 ~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~-------------l~l~p~~~~a~~~l~~~~ 287 (673)
+++|+.+|++.++..|++.+...-||.+|...++-. ++..|.+.++|..++.+.
T Consensus 358 le~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 358 LEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 888888888888888888888888888887775221 566788888887777443
No 46
>KOG1125|consensus
Probab=99.55 E-value=6.6e-14 Score=148.95 Aligned_cols=161 Identities=20% Similarity=0.274 Sum_probs=147.0
Q ss_pred HHhcCCCChhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------
Q psy17691 109 CYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVF------- 180 (673)
Q Consensus 109 ~~~l~p~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~------- 180 (673)
+...+|++.++|..++.... .++-..|+..++++++++|++.+++..||..|...|.-.+|.+++.+.+...
T Consensus 311 AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~ 390 (579)
T KOG1125|consen 311 AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLV 390 (579)
T ss_pred HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcc
Confidence 55678999999987776654 6788899999999999999999999999999999999999999988886653
Q ss_pred ----------------------------------C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy17691 181 ----------------------------------P--EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM 224 (673)
Q Consensus 181 ----------------------------------p--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 224 (673)
| .+++++..||.+|.-.|+|++|+.+|+.||..+|++...|+.|
T Consensus 391 ~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL 470 (579)
T KOG1125|consen 391 SAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL 470 (579)
T ss_pred ccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence 3 3467888999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 225 GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 225 g~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
|-.+..-.+.++|+..|++|+++.|++..+++|||..+..+|-|+
T Consensus 471 GAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~yk 515 (579)
T KOG1125|consen 471 GATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYK 515 (579)
T ss_pred hHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHH
Confidence 999999999999999999999999999999999999999999886
No 47
>KOG0550|consensus
Probab=99.54 E-value=9.7e-14 Score=141.88 Aligned_cols=238 Identities=20% Similarity=0.228 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC---------------cHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPN---------------FPDAYCNLANALKEKGQINVLHKPPYKY 65 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~---------------~a~a~~~la~~l~~~g~~~~A~~~~~~~ 65 (673)
+|.+|++.|..||++.|+++..|.+.+.++...|+++ ....+...++++...++..+|......+
T Consensus 64 ~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~ 143 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSK 143 (486)
T ss_pred hHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhh
Confidence 4789999999999999999999999999999998632 3333444444444444433332111100
Q ss_pred -----Hhhc------CCCch---------hhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHH-HHH
Q psy17691 66 -----TREL------APGNR---------IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFS-YII 124 (673)
Q Consensus 66 -----~~~l------~p~~~---------~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~-~~~ 124 (673)
+..+ .+.+. ..-+.++..+++...+ ..+...-..+++.+..++. .+.
T Consensus 144 ~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a------------~~ea~~ilkld~~n~~al~vrg~ 211 (486)
T KOG0550|consen 144 QAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEA------------QSEAIDILKLDATNAEALYVRGL 211 (486)
T ss_pred hhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhH------------HHHHHHHHhcccchhHHHHhccc
Confidence 0000 00000 0001111111111111 1112223344555544443 233
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHH
Q psy17691 125 SVLLLIQVSEAEECYNTALRLCPTHAD------------SLNNLANIKREQGYIEEATRLYLKALEVFPEF----AAAHS 188 (673)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~------------a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~ 188 (673)
+++..++.+.|+.+|++++.++|++.. .+..-|+-.++.|++.+|.++|..+|.++|++ ...|.
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~ 291 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG 291 (486)
T ss_pred ccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence 344456666666666666666665532 34455566666666666666666666666654 34556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250 (673)
Q Consensus 189 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~ 250 (673)
|.+.+...+|+..+|+..++.++++++....++...|.|+..++++++|++.|++|++...+
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 66666666666666666666666666666666666666666666666666666666665444
No 48
>KOG2076|consensus
Probab=99.54 E-value=1.3e-12 Score=145.18 Aligned_cols=254 Identities=20% Similarity=0.222 Sum_probs=187.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY 65 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~ 65 (673)
++++|+..+.++|+.+|.++.+|+.||.+|.++|+ |.+.+.|..++....++|.+++|.. ++.+
T Consensus 154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~-cy~r 232 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY-CYSR 232 (895)
T ss_pred CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH-HHHH
Confidence 47899999999999999999999999999999997 7778999999999999999999975 7888
Q ss_pred HhhcCCCch---hhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCC-CCh-----hHHHHHHHHHHcCCHHH
Q psy17691 66 TRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSP-DDG-----TTFSYIISVLLLIQVSE 134 (673)
Q Consensus 66 ~~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p-~~~-----~~~~~~~~~~~~g~~~~ 134 (673)
+++..|.+. .....++...|....+ .+.+ ...+.| .+. ..+..+..+...++-+.
T Consensus 233 AI~~~p~n~~~~~ers~L~~~~G~~~~A--------------m~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSLYQKTGDLKRA--------------METFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred HHhcCCcchHHHHHHHHHHHHhChHHHH--------------HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 888888875 2335555555554332 2222 122233 111 11222233334455566
Q ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------------------
Q psy17691 135 AEECYNTALRLC--PTHADSLNNLANIKREQGYIEEATRLYLKALE---------------------------------- 178 (673)
Q Consensus 135 A~~~~~~al~~~--p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~---------------------------------- 178 (673)
|++.++.++... -...+-++.++.++....+++.|......-..
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 666666666622 11233444555555555555555544433322
Q ss_pred -----------------------------hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q psy17691 179 -----------------------------VFP-EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS-FADAYSNMGNT 227 (673)
Q Consensus 179 -----------------------------~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~ 227 (673)
..| ++.+.+..++..|.+.|++.+|+.+|..+....+. +..+|..+|.|
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 112 23678899999999999999999999999887654 46799999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 228 LKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 228 ~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
|..+|.+++|+++|++++.+.|++.++...|+.++..+|+.+
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~E 500 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHE 500 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHH
Confidence 999999999999999999999999999999999999999998
No 49
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.54 E-value=2.1e-13 Score=126.52 Aligned_cols=122 Identities=14% Similarity=-0.016 Sum_probs=112.5
Q ss_pred HHHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy17691 108 FCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH 187 (673)
Q Consensus 108 ~~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 187 (673)
.++.++|+. .+..+..+...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|+++++++|+++.++
T Consensus 18 ~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~ 95 (144)
T PRK15359 18 QLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPV 95 (144)
T ss_pred HHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 355666664 445667778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691 188 SNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM 231 (673)
Q Consensus 188 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 231 (673)
+++|.++...|++++|+..|++++++.|+++..+.++|.+....
T Consensus 96 ~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 96 YQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887654
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=4.1e-14 Score=146.82 Aligned_cols=214 Identities=21% Similarity=0.244 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhh
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV 80 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~ 80 (673)
++++|+..|++.++.++.++..+..++.+ ...++++.+......+.. ..++ +........+
T Consensus 59 ~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~--~~~~----------------~~~l~~~l~~ 119 (280)
T PF13429_consen 59 DYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYE--RDGD----------------PRYLLSALQL 119 (280)
T ss_dssp ------------------------------------------------------------------------------H-
T ss_pred ccccccccccccccccccccccccccccc-cccccccccccccccccc--cccc----------------cchhhHHHHH
Confidence 46889999999999999999999888888 677776665544433211 1111 0001111111
Q ss_pred hhhcCCCcccccccccCCCCchhHHHHHHH--hc--CCCChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691 81 SSDFGNHPTSHLMQSVPGMHNKSRVEIFCY--AL--SPDDGTTFSY-IISVLLLIQVSEAEECYNTALRLCPTHADSLNN 155 (673)
Q Consensus 81 ~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~--~l--~p~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 155 (673)
+...+.. ......... .. .+++...|.. +..+...|+.++|+.+|+++++.+|++..+...
T Consensus 120 ~~~~~~~--------------~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~ 185 (280)
T PF13429_consen 120 YYRLGDY--------------DEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNA 185 (280)
T ss_dssp HHHTT-H--------------HHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHhHH--------------HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 2222211 111111111 12 2455666644 455667999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy17691 156 LANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQ 235 (673)
Q Consensus 156 Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 235 (673)
++.++...|+++++.+.++...+..|.++..+..+|.++..+|++++|+.+|+++++.+|+++..+..+|.++...|+.+
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKD 265 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy17691 236 GALQCYSRAIQI 247 (673)
Q Consensus 236 eA~~~~~~Al~l 247 (673)
+|...++++++.
T Consensus 266 ~A~~~~~~~~~~ 277 (280)
T PF13429_consen 266 EALRLRRQALRL 277 (280)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 999999998764
No 51
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.53 E-value=6.9e-13 Score=138.51 Aligned_cols=168 Identities=17% Similarity=0.030 Sum_probs=135.4
Q ss_pred hhHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17691 117 GTTFSYII-SVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQ 195 (673)
Q Consensus 117 ~~~~~~~~-~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 195 (673)
+..|...+ .+...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++++|++..++.++|.++.
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44565444 45568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc------
Q psy17691 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG------ 269 (673)
Q Consensus 196 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~------ 269 (673)
..|++++|++.|+++++++|+++..... ..+....+++++|+..|++++...+.. .|. .+.++..+|+..
T Consensus 144 ~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~~~~~ 219 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEETLME 219 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHHHHHH
Confidence 9999999999999999999999742222 233456789999999998877553322 221 345555556553
Q ss_pred ---------cccCCCCHHHHHHHHHHhh
Q psy17691 270 ---------FFIRTDLNSAYFWLLLLDA 288 (673)
Q Consensus 270 ---------l~l~p~~~~a~~~l~~~~~ 288 (673)
.++.|+.+++|+++|....
T Consensus 220 ~~~~~~~~~~~l~~~~~ea~~~Lg~~~~ 247 (296)
T PRK11189 220 RLKAGATDNTELAERLCETYFYLAKYYL 247 (296)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3556777889999986543
No 52
>KOG0548|consensus
Probab=99.51 E-value=5.3e-13 Score=141.05 Aligned_cols=287 Identities=23% Similarity=0.238 Sum_probs=200.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKY 65 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~ 65 (673)
+|+.|+.+|.+||.++|.|.-.|.+...+|..+|+ |+.+.+|..+|.++.-.|++++|.. .|..
T Consensus 17 d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~-ay~~ 95 (539)
T KOG0548|consen 17 DFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL-AYSE 95 (539)
T ss_pred cHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH-HHHH
Confidence 58899999999999999999999999999999996 8899999999999999999999986 5666
Q ss_pred HhhcCCCchhh---hhhhhhhc----------------CCCccccc----------ccc-------cCCCCchhHHHH--
Q psy17691 66 TRELAPGNRIR---IGYVSSDF----------------GNHPTSHL----------MQS-------VPGMHNKSRVEI-- 107 (673)
Q Consensus 66 ~~~l~p~~~~~---l~~~~~~l----------------~~~~~a~~----------~~~-------~~~~~~~~a~~~-- 107 (673)
-+...|++... +..++... ...+.... +.. +.......++..
T Consensus 96 GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~ 175 (539)
T KOG0548|consen 96 GLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKAD 175 (539)
T ss_pred HhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHH
Confidence 66777766422 11111000 00000000 000 000000000000
Q ss_pred -----------HH--H-----hcCC------------CChh---------HH-HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691 108 -----------FC--Y-----ALSP------------DDGT---------TF-SYIISVLLLIQVSEAEECYNTALRLCP 147 (673)
Q Consensus 108 -----------~~--~-----~l~p------------~~~~---------~~-~~~~~~~~~g~~~~A~~~~~~al~~~p 147 (673)
.. . ...| +... .. ..+...+...+++.|+++|.++++++
T Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~- 254 (539)
T KOG0548|consen 176 GQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA- 254 (539)
T ss_pred HHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-
Confidence 00 0 0011 0000 11 33455667889999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q psy17691 148 THADSLNNLANIKREQGYIEEATRLYLKALEVFPEF-------AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS---- 216 (673)
Q Consensus 148 ~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---- 216 (673)
.+...+.+.+.+|+..|.+.+.+....++++..-.. ..+...+|..|...++++.|+.+|++++....+
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l 334 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL 334 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH
Confidence 888888899999999999998888888877765443 223334566777778888888888888765322
Q ss_pred ----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-----
Q psy17691 217 ----------------------FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG----- 269 (673)
Q Consensus 217 ----------------------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~----- 269 (673)
-..--..-|+.+++.|+|.+|+.+|.+|+..+|+++..|.|.+.||.++|++.
T Consensus 335 s~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~D 414 (539)
T KOG0548|consen 335 SKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKD 414 (539)
T ss_pred HHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHH
Confidence 22334456888888899999999999999999999999999999999998887
Q ss_pred ----cccCCCCHHHHHHHHHHhhc
Q psy17691 270 ----FFIRTDLNSAYFWLLLLDAH 289 (673)
Q Consensus 270 ----l~l~p~~~~a~~~l~~~~~~ 289 (673)
++++|++..+|+.-|.+..+
T Consensus 415 a~~~ieL~p~~~kgy~RKg~al~~ 438 (539)
T KOG0548|consen 415 AKKCIELDPNFIKAYLRKGAALRA 438 (539)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHH
Confidence 78888888888887755443
No 53
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.48 E-value=1.4e-12 Score=119.59 Aligned_cols=120 Identities=20% Similarity=0.186 Sum_probs=115.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691 137 ECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS 216 (673)
Q Consensus 137 ~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 216 (673)
+.|+++++.+|++..+.+.+|..+...|++++|...++++++.+|.+..++.++|.++...|++++|+..++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691 217 FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHS 256 (673)
Q Consensus 217 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~ 256 (673)
++..++++|.++...|++++|+..|+++++++|++.....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 9999999999999999999999999999999999877543
No 54
>KOG1174|consensus
Probab=99.46 E-value=9.7e-12 Score=127.11 Aligned_cols=182 Identities=16% Similarity=0.160 Sum_probs=146.4
Q ss_pred HHHHhcCCCChhHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy17691 107 IFCYALSPDDGTTFS-YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAA 185 (673)
Q Consensus 107 ~~~~~l~p~~~~~~~-~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 185 (673)
..++..++++...+. .+..+...++.++|+-.|+.|..+.|...+.|..|-.+|...|++.||....+.+++..|.++.
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~ 403 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR 403 (564)
T ss_pred HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh
Confidence 346778888877774 4555667999999999999999999999999999999999999999998888888888888888
Q ss_pred HHHHHH-HHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691 186 AHSNLA-SVLQQ-QGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263 (673)
Q Consensus 186 ~~~~la-~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~ 263 (673)
++..+| .++.. ----++|.++++++++++|....+-..++.++...|+++.++..+++++...|+ ...+..||.++.
T Consensus 404 ~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 404 SLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMR 482 (564)
T ss_pred hhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHH
Confidence 888886 44433 333578888888888888888888888888888888888888888888887775 566778888888
Q ss_pred HcCCCc---------cccCCCCHHHHHHHHHHhhc
Q psy17691 264 DSGKRG---------FFIRTDLNSAYFWLLLLDAH 289 (673)
Q Consensus 264 ~~g~~~---------l~l~p~~~~a~~~l~~~~~~ 289 (673)
..+.++ +.++|++..+.-.+-..+..
T Consensus 483 A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred HhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 877776 78888888776666555443
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.1e-11 Score=123.34 Aligned_cols=203 Identities=17% Similarity=0.181 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCc-------------------HHHHHHHHHHHHHcCChhhhcCCh
Q psy17691 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNF-------------------PDAYCNLANALKEKGQINVLHKPP 62 (673)
Q Consensus 2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~-------------------a~a~~~la~~l~~~g~~~~A~~~~ 62 (673)
-++|++.|...++.+|...+++..||+++.+.|..+. ..+.+.+|.-|+..|-++.|..
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~-- 128 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED-- 128 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH--
Confidence 4789999999999999999999999999999996322 2233444444444444333321
Q ss_pred hhHHhhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHH-hcCCCC-hhHHHHH-HHHHHcCCHHHHHHHH
Q psy17691 63 YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY-ALSPDD-GTTFSYI-ISVLLLIQVSEAEECY 139 (673)
Q Consensus 63 ~~~~~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~-~l~p~~-~~~~~~~-~~~~~~g~~~~A~~~~ 139 (673)
.+.. ...++. ..+...+ ..|....+|++|++.-
T Consensus 129 --------------------------------------------~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A 164 (389)
T COG2956 129 --------------------------------------------IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVA 164 (389)
T ss_pred --------------------------------------------HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 0000 001111 1222222 2333355666666666
Q ss_pred HHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691 140 NTALRLCPTH-----ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ 214 (673)
Q Consensus 140 ~~al~~~p~~-----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 214 (673)
++..++.+.. +..+..|+..+....+++.|...+++|++.+|++..+-..+|.++...|+|+.|++.++.+++.+
T Consensus 165 ~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn 244 (389)
T COG2956 165 ERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN 244 (389)
T ss_pred HHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC
Confidence 6666665544 33455666666666666666666777776666666666666666666677777777776666666
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691 215 PSF-ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250 (673)
Q Consensus 215 p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~ 250 (673)
|+. +++...|..||.++|+.++.+.++.++.+..++
T Consensus 245 ~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 245 PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 664 455666666666667766666666666666554
No 56
>KOG0553|consensus
Probab=99.46 E-value=8.7e-13 Score=130.94 Aligned_cols=120 Identities=25% Similarity=0.374 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK 229 (673)
Q Consensus 150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 229 (673)
++-+..-|+-+.+.++|++|+..|.+||+++|.++..|.|.+.+|.++|+++.|++.++.++.++|.+..+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34456678888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 230 EMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 230 ~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
.+|++++|++.|++||+++|++...+.+|..+-.++++..
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999888877654
No 57
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.45 E-value=4e-12 Score=128.25 Aligned_cols=154 Identities=15% Similarity=0.083 Sum_probs=136.0
Q ss_pred ChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q psy17691 116 DGTTF-SYIISVLLLIQVSEAEECYNTALRLCPTHA---DSLNNLANIKREQGYIEEATRLYLKALEVFPEFAA---AHS 188 (673)
Q Consensus 116 ~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~ 188 (673)
....+ ..+..++..|++++|+..|+++++.+|+++ .+++.+|.++..+|++++|+..|+++++.+|+++. +++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 33444 555667789999999999999999999875 68899999999999999999999999999998865 799
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHH
Q psy17691 189 NLASVLQQQ--------GKLTDALLHYKEAIRIQPSFADAY-----------------SNMGNTLKEMQDIQGALQCYSR 243 (673)
Q Consensus 189 ~la~~~~~~--------g~~~eA~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~eA~~~~~~ 243 (673)
.+|.++... |++++|++.|+++++.+|++...+ ..+|.+|..+|++++|+..|++
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 999999876 889999999999999999986432 4678899999999999999999
Q ss_pred HHHhCCCC---HHHHHHHHHHHHHcCCCc
Q psy17691 244 AIQINPGF---ADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 244 Al~l~p~~---~~a~~~La~~~~~~g~~~ 269 (673)
+++..|+. ..+++.++.++..+|+++
T Consensus 192 al~~~p~~~~~~~a~~~l~~~~~~lg~~~ 220 (235)
T TIGR03302 192 VVENYPDTPATEEALARLVEAYLKLGLKD 220 (235)
T ss_pred HHHHCCCCcchHHHHHHHHHHHHHcCCHH
Confidence 99997764 589999999999999976
No 58
>KOG4162|consensus
Probab=99.45 E-value=1.1e-11 Score=135.71 Aligned_cols=250 Identities=19% Similarity=0.253 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------------CCcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ----------------PNFPDAYCNLANALKEKGQINVLHKPPYKY 65 (673)
Q Consensus 2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~----------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~ 65 (673)
..++++.+++|++.+|+|+.+.+.++.-|..+++ -+.+.+|..+|.++..++++.+|.... ..
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv-d~ 538 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV-DA 538 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH-HH
Confidence 4689999999999999999999999999888775 567889999999999999998887532 22
Q ss_pred HhhcCCCch-hhhhhhhhhc--CCCccc------------------------cccc-----ccCCCCchhHH--------
Q psy17691 66 TRELAPGNR-IRIGYVSSDF--GNHPTS------------------------HLMQ-----SVPGMHNKSRV-------- 105 (673)
Q Consensus 66 ~~~l~p~~~-~~l~~~~~~l--~~~~~a------------------------~~~~-----~~~~~~~~~a~-------- 105 (673)
+..-.++|. ...+.+...+ ++...+ ...+ +.......++.
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 222222211 0001100000 000000 0000 00000000000
Q ss_pred --HHHHH-----------hcCCCChh-------HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691 106 --EIFCY-----------ALSPDDGT-------TFSYIISV-LLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG 164 (673)
Q Consensus 106 --~~~~~-----------~l~p~~~~-------~~~~~~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g 164 (673)
+.... ...|.... .|..+..+ ...++.++|..++.++-+++|..+..|+..|.++..+|
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH
Confidence 00000 01122222 23333333 34778899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17691 165 YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALL--HYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYS 242 (673)
Q Consensus 165 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~--~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 242 (673)
+++||.+.|..|+.++|++......+|.++.+.|+..-|.+ .+..+++++|.+.++|+.+|.++.++|+.++|.++|+
T Consensus 699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 99999999999999999999999999999999998877777 9999999999999999999999999999999999999
Q ss_pred HHHHhCCCCH
Q psy17691 243 RAIQINPGFA 252 (673)
Q Consensus 243 ~Al~l~p~~~ 252 (673)
.|+++++.++
T Consensus 779 aa~qLe~S~P 788 (799)
T KOG4162|consen 779 AALQLEESNP 788 (799)
T ss_pred HHHhhccCCC
Confidence 9999988765
No 59
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.45 E-value=4.1e-12 Score=124.28 Aligned_cols=91 Identities=20% Similarity=0.169 Sum_probs=84.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691 129 LIQVSEAEECYNTALRLCPTHADSLNNLANIK-REQGY--IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALL 205 (673)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~-~~~g~--~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 205 (673)
.|++++|+.+|+++++++|+++.++..+|.++ ...|+ +++|.+.++++++.+|++..+++++|..+...|++++|+.
T Consensus 86 ~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 86 RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 34899999999999999999999999999975 67787 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHH
Q psy17691 206 HYKEAIRIQPSFAD 219 (673)
Q Consensus 206 ~~~~al~~~p~~~~ 219 (673)
+|+++++..|.+..
T Consensus 166 ~~~~aL~l~~~~~~ 179 (198)
T PRK10370 166 LWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHhhCCCCcc
Confidence 99999999987643
No 60
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.44 E-value=7e-12 Score=126.48 Aligned_cols=129 Identities=15% Similarity=0.120 Sum_probs=112.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHH--
Q psy17691 121 SYIISVLLLIQVSEAEECYNTALRLCPTHAD---SLNNLANIKREQ--------GYIEEATRLYLKALEVFPEFAAAH-- 187 (673)
Q Consensus 121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~Lg~~~~~~--------g~~~eA~~~~~~al~~~p~~~~~~-- 187 (673)
..+..++..|++++|+..|+++++.+|+++. +++.+|.++... |++++|++.|+++++.+|++...+
T Consensus 75 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a 154 (235)
T TIGR03302 75 DLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDA 154 (235)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHH
Confidence 4456667799999999999999999998766 799999999886 889999999999999999985432
Q ss_pred ---------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691 188 ---------------SNLASVLQQQGKLTDALLHYKEAIRIQPSF---ADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249 (673)
Q Consensus 188 ---------------~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p 249 (673)
..+|..+..+|++++|+..|+++++..|+. +.++.++|.++..+|++++|..+++......|
T Consensus 155 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 155 KKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467889999999999999999999997764 58999999999999999999999888765554
No 61
>KOG0548|consensus
Probab=99.43 E-value=5.3e-12 Score=133.60 Aligned_cols=235 Identities=22% Similarity=0.252 Sum_probs=168.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhh
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV 80 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~ 80 (673)
+++.|+++|.++++++ .+...+.+.+.+|...|..........- ..+.|+...+......++. ..+|..
T Consensus 239 ~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~---a~E~gre~rad~klIak~~-------~r~g~a 307 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEK---AVEVGRELRADYKLIAKAL-------ARLGNA 307 (539)
T ss_pred hHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHH---HHHHhHHHHHHHHHHHHHH-------HHhhhh
Confidence 3788999999999999 9999999999999999952211111111 0111111000000000000 001111
Q ss_pred hhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691 81 SSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIK 160 (673)
Q Consensus 81 ~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~ 160 (673)
+...+. +..++..+...+.+... -...-.....++++...+...-.+|+-..-...-|+.+
T Consensus 308 ~~k~~~--------------~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~ 368 (539)
T KOG0548|consen 308 YTKRED--------------YEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEA 368 (539)
T ss_pred hhhHHh--------------HHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHH
Confidence 111111 11112222111111100 11222345677777777777778888888888889999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17691 161 REQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240 (673)
Q Consensus 161 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~ 240 (673)
+..|+|.+|+..|.+++..+|+++..|.|.|.+|.++|++..|++.++++++++|++..+|...|.++..+.+|++|.+.
T Consensus 369 Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAlea 448 (539)
T KOG0548|consen 369 FKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEA 448 (539)
T ss_pred HhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691 241 YSRAIQINPGFADAHSNLASIHKDS 265 (673)
Q Consensus 241 ~~~Al~l~p~~~~a~~~La~~~~~~ 265 (673)
|+++++.+|++.++.-.+..|...+
T Consensus 449 y~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 449 YQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999888764
No 62
>KOG1840|consensus
Probab=99.41 E-value=1.7e-11 Score=133.89 Aligned_cols=211 Identities=23% Similarity=0.275 Sum_probs=160.8
Q ss_pred CHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCC
Q psy17691 1 LIDLAIDTYRRAIEL--------QPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPG 72 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l--------~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~ 72 (673)
+|++|+..++.|++. .|.-......+|.+|..+++++.+...|..+.....
T Consensus 214 ~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e--------------------- 272 (508)
T KOG1840|consen 214 RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE--------------------- 272 (508)
T ss_pred cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH---------------------
Confidence 589999999999998 444344444466666666655555544444433321
Q ss_pred chhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCC---ChhHHHH-HHHHHHcCCHHHHHHHHHHHHHhCC-
Q psy17691 73 NRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPD---DGTTFSY-IISVLLLIQVSEAEECYNTALRLCP- 147 (673)
Q Consensus 73 ~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~---~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p- 147 (673)
....++ -+..+.. +..++..|++++|..++++|+++..
T Consensus 273 -------------------------------------~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 273 -------------------------------------EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred -------------------------------------HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 112222 2334443 3456679999999999999999842
Q ss_pred -------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691 148 -------THADSLNNLANIKREQGYIEEATRLYLKALEVF--------PEFAAAHSNLASVLQQQGKLTDALLHYKEAIR 212 (673)
Q Consensus 148 -------~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 212 (673)
.-...+.+++.++..++++++|+.++++++++. +.-+..+.+||.+|+.+|++++|.+.|+++++
T Consensus 316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 234568888999999999999999999999873 23367899999999999999999999999998
Q ss_pred hC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCCc
Q psy17691 213 IQ--------PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI-------NPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 213 ~~--------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l-------~p~~~~a~~~La~~~~~~g~~~ 269 (673)
+. +.....++++|..|.+++++++|.+.|.++..+ .|+-...+.||+.+|..+|+++
T Consensus 396 ~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e 467 (508)
T KOG1840|consen 396 ILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYE 467 (508)
T ss_pred HHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence 74 233568899999999999999999999999876 3455678999999999999997
No 63
>KOG2003|consensus
Probab=99.41 E-value=1e-11 Score=127.71 Aligned_cols=155 Identities=21% Similarity=0.240 Sum_probs=143.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17691 130 IQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209 (673)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 209 (673)
.++.+|.++...++.++..++.++.+.|++-+..|++++|.+.|++++..+....++++|+|..+..+|+.++|+++|-+
T Consensus 470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~k 549 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLK 549 (840)
T ss_pred cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHH
Q psy17691 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAY 280 (673)
Q Consensus 210 al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~ 280 (673)
.-.+--++.+++..++.+|..+.+...|+++|.++..+-|+++.++..|+.+|.+.|+.. .+..|-+-+..
T Consensus 550 lh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~i 629 (840)
T KOG2003|consen 550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETI 629 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHH
Confidence 988888999999999999999999999999999999999999999999999999988865 45566666655
Q ss_pred HHHH
Q psy17691 281 FWLL 284 (673)
Q Consensus 281 ~~l~ 284 (673)
-||+
T Consensus 630 ewl~ 633 (840)
T KOG2003|consen 630 EWLA 633 (840)
T ss_pred HHHH
Confidence 5555
No 64
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.39 E-value=1.7e-11 Score=119.66 Aligned_cols=161 Identities=19% Similarity=0.181 Sum_probs=151.9
Q ss_pred HHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy17691 109 CYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS 188 (673)
Q Consensus 109 ~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 188 (673)
....+|++.........++..|+-+++..+..++...+|.+..++..+|......|+|.+|+..++++..++|++.++|+
T Consensus 59 ~~~~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 59 AVLRNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred HHhcCcchHHHHHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhh
Confidence 34467888777666677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR 268 (673)
Q Consensus 189 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~ 268 (673)
.+|.+|.+.|+.++|...|.+++++.|+++.+.+|+|..|.-.|+++.|..++.++....+.+..+..||+.+...+|++
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q psy17691 269 G 269 (673)
Q Consensus 269 ~ 269 (673)
+
T Consensus 219 ~ 219 (257)
T COG5010 219 R 219 (257)
T ss_pred H
Confidence 7
No 65
>KOG2003|consensus
Probab=99.38 E-value=3.4e-11 Score=123.96 Aligned_cols=224 Identities=18% Similarity=0.146 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCc---------------HHHHHHHHHHHHHcCChhhhcCChhhHH
Q psy17691 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNF---------------PDAYCNLANALKEKGQINVLHKPPYKYT 66 (673)
Q Consensus 2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~---------------a~a~~~la~~l~~~g~~~~A~~~~~~~~ 66 (673)
+.+|-.+-..|+.++..++.++.+.|++-+..|+.+. .+++|++|..+..+|+.++|+...++
T Consensus 472 ~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~k-- 549 (840)
T KOG2003|consen 472 FADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLK-- 549 (840)
T ss_pred hhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHH--
Confidence 5677888888888888888888888888888886333 34455555555555555555431111
Q ss_pred hhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q psy17691 67 RELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRL 145 (673)
Q Consensus 67 ~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~ 145 (673)
.-.+--++.+.+..+...+. +.+..+|+++|-++..+
T Consensus 550 ------------------------------------------lh~il~nn~evl~qianiye~led~aqaie~~~q~~sl 587 (840)
T KOG2003|consen 550 ------------------------------------------LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL 587 (840)
T ss_pred ------------------------------------------HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence 11122345556655555554 78999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691 146 CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225 (673)
Q Consensus 146 ~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 225 (673)
-|+++.++..||.+|-+.|+-.+|.+++-...+..|.+.+..-.||..|....-+++|+.+|+++--+.|+...-...++
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmia 667 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIA 667 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 226 ~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
.|+.+.|+|.+|.+.|+...+..|.+.+.+.-|..+.-.+|-.+
T Consensus 668 sc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 668 SCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 99999999999999999999999999999888888877777543
No 66
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.38 E-value=1.3e-11 Score=113.20 Aligned_cols=109 Identities=16% Similarity=0.039 Sum_probs=102.0
Q ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691 140 NTALRLC-PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA 218 (673)
Q Consensus 140 ~~al~~~-p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 218 (673)
.....+. ++..+..+.+|..+.+.|++++|+..|+-...++|.+...|++||.++..+|++++|+..|.+++.++|+++
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 3445566 778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691 219 DAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248 (673)
Q Consensus 219 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~ 248 (673)
..+.++|.|+...|+.++|++.|+.++...
T Consensus 104 ~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 104 QAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999886
No 67
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=1.9e-10 Score=125.87 Aligned_cols=253 Identities=11% Similarity=0.016 Sum_probs=174.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHH----------------HHHHHHHHcCChhhhcCChhh
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYC----------------NLANALKEKGQINVLHKPPYK 64 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~----------------~la~~l~~~g~~~~A~~~~~~ 64 (673)
+++.|.+.+.++.+..|+...++...|.++..+|+++.+..++ ..+..+...|++++|.. .++
T Consensus 99 ~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~-~l~ 177 (409)
T TIGR00540 99 DYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH-GVD 177 (409)
T ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH-HHH
Confidence 4789999999999999999999999999999999744333333 34666667788877765 456
Q ss_pred HHhhcCCCchh---hhhhhhhhcCCCcccccccccCCCCchhHHHHHH--HhcCCCChhHHHH----H-HHHHHcCCHHH
Q psy17691 65 YTRELAPGNRI---RIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFC--YALSPDDGTTFSY----I-ISVLLLIQVSE 134 (673)
Q Consensus 65 ~~~~l~p~~~~---~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~--~~l~p~~~~~~~~----~-~~~~~~g~~~~ 134 (673)
......|++.. .++.++...++...+ ...+. ......++..+.. . ...+..+..++
T Consensus 178 ~l~~~~P~~~~~l~ll~~~~~~~~d~~~a--------------~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 178 KLLEMAPRHKEVLKLAEEAYIRSGAWQAL--------------DDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhHHHH--------------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666777652 345555555543222 11111 1111122221111 1 11123334455
Q ss_pred HHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHH
Q psy17691 135 AEECYNTALRLCP----THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH--SNLASVLQQQGKLTDALLHYK 208 (673)
Q Consensus 135 A~~~~~~al~~~p----~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~eA~~~~~ 208 (673)
+.+.+.++.+..| +++.++..++..+...|++++|.+.++++++..|++.... ..........++.+++++.++
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 5567777777777 5788888899999999999999999999999888886532 223333344578888899999
Q ss_pred HHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 209 EAIRIQPSFA--DAYSNMGNTLKEMQDIQGALQCYS--RAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 209 ~al~~~p~~~--~~~~~lg~~~~~~g~~~eA~~~~~--~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
++++.+|+++ ..+..+|.++.++|++++|.++|+ ++++.+|+... +..+|.++.+.|+.+
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKA 387 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHH
Confidence 9999999998 888889999999999999999999 57778887655 558899998888754
No 68
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=3.5e-11 Score=131.70 Aligned_cols=235 Identities=12% Similarity=0.031 Sum_probs=168.2
Q ss_pred CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhh
Q psy17691 1 LIDLAIDTYRRAIELQPNFP-DAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYK 64 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~-~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~ 64 (673)
++++|..+|+++.+..|++. .+....+.++...|+ |++..++..++.++...|++++|.. .+.
T Consensus 133 ~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~-~l~ 211 (409)
T TIGR00540 133 DEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDD-IID 211 (409)
T ss_pred CHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH-HHH
Confidence 36788899999998888875 566667888888886 7788888889999999999887764 344
Q ss_pred HHhhcCCCchhhhh----hhhhh-cCCCcccccccccCCCCchhHHHHHHHhcCC----CChhHH-HHHHHHHHcCCHHH
Q psy17691 65 YTRELAPGNRIRIG----YVSSD-FGNHPTSHLMQSVPGMHNKSRVEIFCYALSP----DDGTTF-SYIISVLLLIQVSE 134 (673)
Q Consensus 65 ~~~~l~p~~~~~l~----~~~~~-l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p----~~~~~~-~~~~~~~~~g~~~~ 134 (673)
...+.......... ..+.. +.. . ........+.. .....| ++...+ ..+..+...|++++
T Consensus 212 ~l~k~~~~~~~~~~~l~~~a~~~~l~~---~------~~~~~~~~L~~-~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~ 281 (409)
T TIGR00540 212 NMAKAGLFDDEEFADLEQKAEIGLLDE---A------MADEGIDGLLN-WWKNQPRHRRHNIALKIALAEHLIDCDDHDS 281 (409)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHH---H------HHhcCHHHHHH-HHHHCCHHHhCCHHHHHHHHHHHHHCCChHH
Confidence 44433211111000 00000 000 0 00000011111 112233 355555 55566778999999
Q ss_pred HHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--
Q psy17691 135 AEECYNTALRLCPTHADSL--NNLANIKREQGYIEEATRLYLKALEVFPEFA--AAHSNLASVLQQQGKLTDALLHYK-- 208 (673)
Q Consensus 135 A~~~~~~al~~~p~~~~a~--~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~eA~~~~~-- 208 (673)
|++.++++++..|++.... ..........++.+++++.++++++.+|+++ ..+..+|.++++.|++++|.++|+
T Consensus 282 A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a 361 (409)
T TIGR00540 282 AQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNV 361 (409)
T ss_pred HHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 9999999999999987532 2233334456889999999999999999999 889999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 209 EAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI 247 (673)
Q Consensus 209 ~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l 247 (673)
++++..|++.. +..+|.++.++|+.++|.++|++++..
T Consensus 362 ~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 362 AACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 68888887655 669999999999999999999998764
No 69
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.38 E-value=1.2e-10 Score=135.55 Aligned_cols=156 Identities=10% Similarity=-0.022 Sum_probs=123.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---------------C
Q psy17691 124 ISVLLLIQVSEAEECYNTALRLCP------THADSLNNLANIKREQGYIEEATRLYLKALEVFP---------------E 182 (673)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p---------------~ 182 (673)
..++..+++++|+.+|++++..+| ........|...|.+.++|++|..++++..+..| +
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 344567778888888888877552 2333356777888888888888888888877443 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691 183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIH 262 (673)
Q Consensus 183 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~ 262 (673)
.......++.++...|++.+|++.+++.+...|.|..++..+|.++...|++.+|++.+++++.++|++..+...++.++
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 35677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCCc---------cccCCCCHHH
Q psy17691 263 KDSGKRG---------FFIRTDLNSA 279 (673)
Q Consensus 263 ~~~g~~~---------l~l~p~~~~a 279 (673)
.++|++. +...|+++..
T Consensus 495 l~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 495 MALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 8888887 5677887754
No 70
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.37 E-value=5.2e-11 Score=129.76 Aligned_cols=235 Identities=11% Similarity=0.095 Sum_probs=158.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhh
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAY-CNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYK 64 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~-~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~ 64 (673)
++++|..+|+++.+.+|++..+. ...+.++...|+ |++..++..++.++...|++++|.. .+.
T Consensus 133 ~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~-~l~ 211 (398)
T PRK10747 133 DEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD-ILP 211 (398)
T ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH-HHH
Confidence 36778888888888888775433 344777777775 6677777777888888888777653 222
Q ss_pred HHhhcCCCchhhhh----hhhhhcCCCcccccccccCCCCchhHHHHHHH---hcCCCChhHH-HHHHHHHHcCCHHHHH
Q psy17691 65 YTRELAPGNRIRIG----YVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY---ALSPDDGTTF-SYIISVLLLIQVSEAE 136 (673)
Q Consensus 65 ~~~~l~p~~~~~l~----~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~---~l~p~~~~~~-~~~~~~~~~g~~~~A~ 136 (673)
...+....+..... ..+..+- .........+.+...-. ...|+++... .++..+...|+.++|.
T Consensus 212 ~l~k~~~~~~~~~~~l~~~a~~~l~--------~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 212 SMAKAHVGDEEHRAMLEQQAWIGLM--------DQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHH--------HHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 22222211110000 0000000 00000000111111100 1234455554 5566677899999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691 137 ECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS 216 (673)
Q Consensus 137 ~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 216 (673)
..++++++. +.++.....++.+ ..++.+++++..++.++.+|+++..+..+|.++...+++++|.++|+++++..|+
T Consensus 284 ~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 284 QIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999999994 5566555555554 4489999999999999999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691 217 FADAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248 (673)
Q Consensus 217 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~ 248 (673)
+ ..+..++.++.++|+.++|.++|++++.+.
T Consensus 361 ~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 361 A-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5 456689999999999999999999998764
No 71
>KOG0553|consensus
Probab=99.37 E-value=5.8e-12 Score=125.16 Aligned_cols=115 Identities=23% Similarity=0.256 Sum_probs=107.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691 121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL 200 (673)
Q Consensus 121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 200 (673)
..+..+++.++|++|+..|.+||+++|+++..|.+.+.+|.++|.++.|++.++.+++++|.+..+|..||.+|..+|++
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 45567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy17691 201 TDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQ 235 (673)
Q Consensus 201 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 235 (673)
++|++.|+++|+++|++...+.+|..+-.++++..
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999988888887777666544
No 72
>KOG0495|consensus
Probab=99.36 E-value=2.3e-10 Score=122.92 Aligned_cols=243 Identities=19% Similarity=0.144 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhHH
Q psy17691 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKYT 66 (673)
Q Consensus 2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~ 66 (673)
++-|+..|..+|+..|.....|...+..-..-|. |.....|...+..+...|+...|.. ....+
T Consensus 532 ~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~-il~~a 610 (913)
T KOG0495|consen 532 IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARV-ILDQA 610 (913)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHH-HHHHH
Confidence 4567888999999999999998888777766665 4444556666666677777666543 33334
Q ss_pred hhcCCCc-hhhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691 67 RELAPGN-RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIISVLLLIQVSEAEECYNTAL 143 (673)
Q Consensus 67 ~~l~p~~-~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al 143 (673)
.+..|++ .++++.+.....+. .++.+...+ +....+.....+........+++.++|+.++++++
T Consensus 611 f~~~pnseeiwlaavKle~en~------------e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~l 678 (913)
T KOG0495|consen 611 FEANPNSEEIWLAAVKLEFEND------------ELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEAL 678 (913)
T ss_pred HHhCCCcHHHHHHHHHHhhccc------------cHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHH
Confidence 4444443 24444333332221 122222333 22233333333344455556899999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691 144 RLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN 223 (673)
Q Consensus 144 ~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 223 (673)
+..|+....|..+|+++.++++.+.|.+.|...++..|.....|..|+.+-.+.|+.-+|...++++.-.+|++...|..
T Consensus 679 k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle 758 (913)
T KOG0495|consen 679 KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLE 758 (913)
T ss_pred HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691 224 MGNTLKEMQDIQGALQCYSRAIQINPGFADAHSN 257 (673)
Q Consensus 224 lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~ 257 (673)
.-.+-.+.|..+.|.....+||+..|++...|..
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaE 792 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQECPSSGLLWAE 792 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHH
Confidence 9999999999999999999999998887665543
No 73
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.35 E-value=1e-10 Score=114.29 Aligned_cols=124 Identities=23% Similarity=0.187 Sum_probs=118.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691 121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL 200 (673)
Q Consensus 121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 200 (673)
.++......|++.+|+..++++..+.|++.++|..+|.+|.+.|++++|...|.+++++.|+.+.+.+|+|..+.-.|++
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 46677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691 201 TDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRA 244 (673)
Q Consensus 201 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 244 (673)
+.|..++..+....+.+..+..|++.+...+|++++|...-.+-
T Consensus 185 ~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 185 EDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 99999999999999999999999999999999999998876653
No 74
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.35 E-value=3e-11 Score=138.14 Aligned_cols=139 Identities=14% Similarity=0.070 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEA 210 (673)
Q Consensus 131 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 210 (673)
...+++.-.......+|++++++.+||.+..+.|++++|...++.+++++|++..++.+++.++.+++++++|+..++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44455555555566689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 211 IRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 211 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
++.+|+++.+++.+|.++.++|++++|+++|++++..+|+++.++.++|.++...|+.+
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~ 205 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALW 205 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999987
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.32 E-value=1.3e-10 Score=124.72 Aligned_cols=147 Identities=14% Similarity=0.038 Sum_probs=118.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----HHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy17691 122 YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIE----EATRLYLKALEVFPEFAAAHSNLASVLQQQ 197 (673)
Q Consensus 122 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~----eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 197 (673)
.+..+...|++++|...++++++.+|++..++.. +..+...|++. .+.+.+......+|.....+..+|.++..+
T Consensus 49 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 49 EALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHc
Confidence 3445567889999999999999999999887775 55555554444 444444443356677778888899999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCCc
Q psy17691 198 GKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA----DAHSNLASIHKDSGKRG 269 (673)
Q Consensus 198 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~----~a~~~La~~~~~~g~~~ 269 (673)
|++++|+..++++++++|+++.++..+|.++...|++++|+.++++++...|... ..+..++.++...|+++
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999999999999999999999999999999999876433 34667899999999886
No 76
>KOG1840|consensus
Probab=99.32 E-value=1.5e-10 Score=126.50 Aligned_cols=192 Identities=22% Similarity=0.301 Sum_probs=151.8
Q ss_pred CHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCC
Q psy17691 1 LIDLAIDTYRRAIEL--------QPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPG 72 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l--------~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~ 72 (673)
+|++|+..|++|+.+ +|.-+..+.+||.+|...|++.++..++..|......-.
T Consensus 256 k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~------------------ 317 (508)
T KOG1840|consen 256 KYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL------------------ 317 (508)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh------------------
Confidence 588999999999986 455677889999999999988888888877766553300
Q ss_pred chhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhC-----
Q psy17691 73 NRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLC----- 146 (673)
Q Consensus 73 ~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~----- 146 (673)
....++-...+... ..+..++++++|+.++++++++.
T Consensus 318 -------------------------------------~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 318 -------------------------------------GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred -------------------------------------ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 00111122233333 33445889999999999999973
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q psy17691 147 ---PTHADSLNNLANIKREQGYIEEATRLYLKALEVF--------PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI-- 213 (673)
Q Consensus 147 ---p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 213 (673)
+.-+..+.+||.+|..+|++++|.+.|++++++. +.....+.++|..|.+.+++++|.+.|.+++.+
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2336689999999999999999999999999874 334678899999999999999999999999876
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 214 -----QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI 247 (673)
Q Consensus 214 -----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l 247 (673)
.|+....+.|||.+|..+|++++|+++.++++..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3445678999999999999999999999998854
No 77
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.32 E-value=5.7e-11 Score=108.76 Aligned_cols=111 Identities=18% Similarity=0.076 Sum_probs=98.0
Q ss_pred hcCCCChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy17691 111 ALSPDDGTTF-SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSN 189 (673)
Q Consensus 111 ~l~p~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 189 (673)
..+|++.... ..+..++..|++++|+..++++++.+|++..++..+|.++..+|++++|+.+++++++.+|.+...+++
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 3455554443 344445567799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy17691 190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAY 221 (673)
Q Consensus 190 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 221 (673)
+|.++...|++++|+..++++++.+|++....
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 99999999999999999999999999886644
No 78
>KOG4162|consensus
Probab=99.31 E-value=4.8e-10 Score=123.17 Aligned_cols=282 Identities=17% Similarity=0.156 Sum_probs=207.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------------CCcHHHH-HHHHHHHHHcCChhhhcCCh
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ-----------------PNFPDAY-CNLANALKEKGQINVLHKPP 62 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~-----------------~~~a~a~-~~la~~l~~~g~~~~A~~~~ 62 (673)
+|+.+.+.|++++..--...+.|+.++.+|...|. |.....+ ..-..++...+..++++...
T Consensus 338 ~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA 417 (799)
T KOG4162|consen 338 QFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYA 417 (799)
T ss_pred HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHH
Confidence 36788889999988888888899999999988885 2223333 33334445566666665433
Q ss_pred hhHHhh-------cCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHHHHH-HcCCH
Q psy17691 63 YKYTRE-------LAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIISVL-LLIQV 132 (673)
Q Consensus 63 ~~~~~~-------l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~~~-~~g~~ 132 (673)
.+.+.. +.|--...+|..|........... ......++.+..+ +.+.+|+++.+.+++...+ ..++.
T Consensus 418 ~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~s---eR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l 494 (799)
T KOG4162|consen 418 QKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKS---ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQL 494 (799)
T ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChH---HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhH
Confidence 332221 222223344444443332221110 0111122333333 6678899988877766555 58899
Q ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------------------
Q psy17691 133 SEAEECYNTALRL-CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---------------------------- 183 (673)
Q Consensus 133 ~~A~~~~~~al~~-~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---------------------------- 183 (673)
+.|....++++++ ..+++.+|..++.++..++++.+|+.....++.-.|+|
T Consensus 495 ~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 495 TSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKL 574 (799)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHH
Confidence 9999999999999 55678999999999999999999988887776654441
Q ss_pred ---------------------------------------------------------------------------HHHHH
Q psy17691 184 ---------------------------------------------------------------------------AAAHS 188 (673)
Q Consensus 184 ---------------------------------------------------------------------------~~~~~ 188 (673)
...|.
T Consensus 575 ~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwl 654 (799)
T KOG4162|consen 575 ALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWL 654 (799)
T ss_pred HHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHH
Confidence 02345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR 268 (673)
Q Consensus 189 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~ 268 (673)
..+..+...++.++|.-++.++-.+.|..+..|+..|.++...|+.++|.+.|..|+.++|++......+|.++.+.|+.
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~ 734 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP 734 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc
Confidence 56677777888888888999999999999999999999999999999999999999999999999999999999999977
Q ss_pred c-----------cccCCCCHHHHHHHHH
Q psy17691 269 G-----------FFIRTDLNSAYFWLLL 285 (673)
Q Consensus 269 ~-----------l~l~p~~~~a~~~l~~ 285 (673)
. ++++|.++++|+.+|-
T Consensus 735 ~la~~~~~L~dalr~dp~n~eaW~~LG~ 762 (799)
T KOG4162|consen 735 RLAEKRSLLSDALRLDPLNHEAWYYLGE 762 (799)
T ss_pred chHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 5 7899999999999983
No 79
>KOG0624|consensus
Probab=99.29 E-value=1.6e-10 Score=115.84 Aligned_cols=173 Identities=15% Similarity=0.140 Sum_probs=148.7
Q ss_pred HHhcCCCChhHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---
Q psy17691 109 CYALSPDDGTTF-SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA--- 184 (673)
Q Consensus 109 ~~~l~p~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~--- 184 (673)
++..+|++..++ ..+..++.+|+-.-|+.-+.+++++.|+...+....|.++.++|++++|+..|+.+++.+|++.
T Consensus 64 Ave~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ 143 (504)
T KOG0624|consen 64 AVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVL 143 (504)
T ss_pred HHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhH
Confidence 344566666655 4556777899999999999999999999999999999999999999999999999999999652
Q ss_pred HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691 185 AAHSNL------------ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA 252 (673)
Q Consensus 185 ~~~~~l------------a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~ 252 (673)
+++..+ ...+...|++..|++...+.|++.|-++..+...+.||...|+...|+..++.+-++..++.
T Consensus 144 eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnT 223 (504)
T KOG0624|consen 144 EAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNT 223 (504)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccch
Confidence 233222 23345678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCc---------cccCCCCHHHHH
Q psy17691 253 DAHSNLASIHKDSGKRG---------FFIRTDLNSAYF 281 (673)
Q Consensus 253 ~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~ 281 (673)
+.++.++.++...|+.+ |+++||+-..|-
T Consensus 224 e~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~ 261 (504)
T KOG0624|consen 224 EGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP 261 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH
Confidence 99999999999999887 889999877553
No 80
>KOG1174|consensus
Probab=99.28 E-value=6.4e-10 Score=114.04 Aligned_cols=162 Identities=14% Similarity=0.073 Sum_probs=143.0
Q ss_pred HHHhcCCCChhHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy17691 108 FCYALSPDDGTTFS-YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAA 186 (673)
Q Consensus 108 ~~~~l~p~~~~~~~-~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 186 (673)
...........-|+ .+..++..+++..|+.+-+++++.+|.+.+++...|.++...++.++|+-.|+.|..+.|...+.
T Consensus 291 ~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~ 370 (564)
T KOG1174|consen 291 YLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI 370 (564)
T ss_pred HHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH
Confidence 33444434444454 44556678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691 187 HSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG-NTLK-EMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD 264 (673)
Q Consensus 187 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg-~~~~-~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~ 264 (673)
|..|-.+|...|++.||....+.+++.-|+++.++..+| .++. .----++|...++++++++|++..+-..++.++..
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~ 450 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV 450 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999997 4443 33445899999999999999999999999999999
Q ss_pred cCCCc
Q psy17691 265 SGKRG 269 (673)
Q Consensus 265 ~g~~~ 269 (673)
.|+++
T Consensus 451 Eg~~~ 455 (564)
T KOG1174|consen 451 EGPTK 455 (564)
T ss_pred hCccc
Confidence 99987
No 81
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.26 E-value=3.2e-10 Score=132.06 Aligned_cols=198 Identities=14% Similarity=0.094 Sum_probs=154.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhhhhcCCC
Q psy17691 8 TYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNH 87 (673)
Q Consensus 8 ~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~~~l~~~ 87 (673)
++--..-+.|+.+...+..+.+..+.|+.+.+...+..+
T Consensus 22 ~~~~~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qa----------------------------------------- 60 (822)
T PRK14574 22 LFISGFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEE----------------------------------------- 60 (822)
T ss_pred HHHcccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHH-----------------------------------------
Confidence 343445578999999999999999999654222222211
Q ss_pred cccccccccCCCCchhHHHHHHHhcCCCCh-hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy17691 88 PTSHLMQSVPGMHNKSRVEIFCYALSPDDG-TTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYI 166 (673)
Q Consensus 88 ~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~-~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~ 166 (673)
+..+|++. ..+-.+..+...|+.++|+.++++++.-.|........+|.++..+|++
T Consensus 61 ----------------------L~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 61 ----------------------SKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred ----------------------HhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 22344442 2233334445678999999999999944455555566668899999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQ 246 (673)
Q Consensus 167 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 246 (673)
++|++.|+++++.+|+++.++..++.++...++.++|++.++++.+.+|.+... ..++.++..+++..+|++.|+++++
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999985554 6667777778888789999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 247 INPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 247 l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
.+|++.+++..+..++...|-..
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~ 220 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVE 220 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcH
Confidence 99999999999999888888775
No 82
>KOG0495|consensus
Probab=99.26 E-value=2e-09 Score=115.95 Aligned_cols=265 Identities=15% Similarity=0.146 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------CCcHHHHHHHHHHHHHcCChhhhcCChhhHHh
Q psy17691 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKYTR 67 (673)
Q Consensus 3 ~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~---------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~ 67 (673)
++-...+++|+..-|.....|.+.+..+...|+ |+..+.|+..-.......+++.|.. .+.++.
T Consensus 567 Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~-llakar 645 (913)
T KOG0495|consen 567 ESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARD-LLAKAR 645 (913)
T ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHH-HHHHHh
Confidence 455678999999999999999999999998885 4444555555555555555555543 444454
Q ss_pred hcCCCchhhhh--hhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q psy17691 68 ELAPGNRIRIG--YVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVL-LLIQVSEAEECYNTALR 144 (673)
Q Consensus 68 ~l~p~~~~~l~--~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~ 144 (673)
...+.....+- .+...+++.+. ...+-..++...|+....|..++..+ ++++.+.|...|...++
T Consensus 646 ~~sgTeRv~mKs~~~er~ld~~ee------------A~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 646 SISGTERVWMKSANLERYLDNVEE------------ALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred ccCCcchhhHHHhHHHHHhhhHHH------------HHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 44444433322 22222222111 11222346777899999987777666 48999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q psy17691 145 LCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF------- 217 (673)
Q Consensus 145 ~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------- 217 (673)
..|+....|..|+.+-...|+...|...++++.-.+|++...|...-..-++.|+.+.|.....+||+..|++
T Consensus 714 ~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEa 793 (913)
T KOG0495|consen 714 KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEA 793 (913)
T ss_pred cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987764
Q ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-----
Q psy17691 218 -----------------------ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG----- 269 (673)
Q Consensus 218 -----------------------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~----- 269 (673)
+.++...|.++....++++|.++|.++++.+|++.++|..+-..+...|.-+
T Consensus 794 I~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev 873 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEV 873 (913)
T ss_pred HHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHH
Confidence 3467778889999999999999999999999999999999888888888544
Q ss_pred ----cccCCCCHHHH
Q psy17691 270 ----FFIRTDLNSAY 280 (673)
Q Consensus 270 ----l~l~p~~~~a~ 280 (673)
....|.+.+.|
T Consensus 874 ~~~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 874 LKKCETAEPTHGELW 888 (913)
T ss_pred HHHHhccCCCCCcHH
Confidence 44556655433
No 83
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.26 E-value=7.5e-11 Score=128.89 Aligned_cols=150 Identities=11% Similarity=0.032 Sum_probs=119.6
Q ss_pred CcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691 474 DAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK 551 (673)
Q Consensus 474 ~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (673)
+.+++++++++. |..+..++++..+.++.|+.+++++|
T Consensus 221 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG---------------------------------------- 260 (406)
T PRK15427 221 TPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILG---------------------------------------- 260 (406)
T ss_pred CCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEE----------------------------------------
Confidence 345666677665 88999999999998888999999988
Q ss_pred CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-C------CCCcchhhhhhhcCCceeecCCCc
Q psy17691 552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-L------CNGHTTSMDVLWTGTPVVTLPGET 624 (673)
Q Consensus 552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p------~~g~~t~~eal~~GvPvvt~~g~~ 624 (673)
.++.++.+++.++++|++ ++|.|.|..++++....|+.+|+++-|. . ++-|++++|||++|+|||+-....
T Consensus 261 -~G~~~~~l~~~~~~~~l~-~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g 338 (406)
T PRK15427 261 -IGPWERRLRTLIEQYQLE-DVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG 338 (406)
T ss_pred -CchhHHHHHHHHHHcCCC-CeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC
Confidence 455677899999999995 8999999999999999999999997654 3 566899999999999999864432
Q ss_pred chhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcC-CHHHHHHHHhhh
Q psy17691 625 LASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGT-DRDYCEKALLYH 671 (673)
Q Consensus 625 ~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~-d~~~~~~~~~~~ 671 (673)
... ++ .-|-..++. .|.+++.+...+|.+ |++.++++....
T Consensus 339 ~~E-----~v-~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~a 382 (406)
T PRK15427 339 IPE-----LV-EADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRA 382 (406)
T ss_pred chh-----hh-cCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 211 11 124445554 489999999999999 999888877643
No 84
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.25 E-value=1.4e-10 Score=123.95 Aligned_cols=113 Identities=21% Similarity=0.284 Sum_probs=86.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691 153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ 232 (673)
Q Consensus 153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 232 (673)
+...|..++..|+|++|+.+|+++++++|++..+++++|.++..+|++++|+..++++++++|+++.+++++|.+|..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34556777777777777777777777777777777777887777788888888888888888877777888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691 233 DIQGALQCYSRAIQINPGFADAHSNLASIHKDS 265 (673)
Q Consensus 233 ~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~ 265 (673)
++++|+.+|+++++++|++..+...++.+...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888888888888888887777777777765544
No 85
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.24 E-value=9.2e-11 Score=128.00 Aligned_cols=189 Identities=16% Similarity=0.118 Sum_probs=126.6
Q ss_pred eeccCccccccccccccCcccCcccccccccccCCCCCcEEEecCCc---ccccChhhHHHHHHHHhcccCeeEEeeccC
Q psy17691 437 VLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQ---LYKIDPSTLQMWVNVLKAVPNSILWLLKFP 513 (673)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~---~~K~~~~~~~~~~~il~~~p~~~l~~~~~~ 513 (673)
++.||+.+..+.+.+... ...+...+++.+..+++.++| ..|..+.+++++.++.++.|+.+|+++|..
T Consensus 181 vI~ngvd~~~f~~~~~~~--------~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~ 252 (396)
T cd03818 181 VIHDGIDTDRLRPDPQAR--------LRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGD 252 (396)
T ss_pred EeCCCccccccCCCchhh--------hcccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 467887665443221110 112233345556666655554 468999999999999999999999998821
Q ss_pred CcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhhhhhHHHHHHHcCC--CCCeEEeccCcChHHHHHhccc
Q psy17691 514 AVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGL--DQHRILFSNVAAKEEHVRRGQL 591 (673)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~rv~~~~~~~~~~~~~~~~~ 591 (673)
..+ . -. -+..+....++..++.+. +.++|+|+|.++.++....|..
T Consensus 253 ~~~---~-----g~------------------------~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~ 300 (396)
T cd03818 253 GVS---Y-----GA------------------------PPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQV 300 (396)
T ss_pred Ccc---c-----CC------------------------CCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHh
Confidence 000 0 00 000011112223344443 3589999999999999999999
Q ss_pred ccEEec-CCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHH
Q psy17691 592 ADVCLD-TPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKAL 668 (673)
Q Consensus 592 ~Di~Ld-~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~ 668 (673)
+|+++- |+|++-|.+++|||++|+|||+-....... ++.. |-..+++ .|.+++.+...++.+|++.+.+++
T Consensus 301 adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~g~~e-----~i~~-~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~ 374 (396)
T cd03818 301 SDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTAPVRE-----VITD-GENGLLVDFFDPDALAAAVIELLDDPARRARLR 374 (396)
T ss_pred CcEEEEcCcccccchHHHHHHHCCCCEEEcCCCCchh-----hccc-CCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHH
Confidence 999965 568888999999999999999876543322 2222 4455554 489999999999999999998887
Q ss_pred hhh
Q psy17691 669 LYH 671 (673)
Q Consensus 669 ~~~ 671 (673)
...
T Consensus 375 ~~a 377 (396)
T cd03818 375 RAA 377 (396)
T ss_pred HHH
Confidence 654
No 86
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.24 E-value=3.4e-09 Score=115.55 Aligned_cols=122 Identities=15% Similarity=0.073 Sum_probs=99.7
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691 144 RLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN 223 (673)
Q Consensus 144 ~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 223 (673)
+..|+++.+...++..+...|+.++|.+.++++++. +.+......++.+ ..++.+++++.+++.++.+|+++..+..
T Consensus 257 ~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~ 333 (398)
T PRK10747 257 RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWST 333 (398)
T ss_pred HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHH
Confidence 344567778888899999999999999999999984 4455554444444 3488999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 224 MGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 224 lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
+|.++...|++++|.++|+++++..|++.. +..|+.++...|+.+
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~ 378 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPE 378 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHH
Confidence 999999999999999999999999988544 557889998888854
No 87
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.24 E-value=1.1e-10 Score=127.64 Aligned_cols=163 Identities=23% Similarity=0.199 Sum_probs=127.4
Q ss_pred ccccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccC--eeEEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691 464 TSRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPN--SILWLLKFPAVGEANISRPLFRPRLRPSASTSIVL 539 (673)
Q Consensus 464 ~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (673)
..|.++|++.+.++|++++++. |..+.+++++.++++..|+ .+|+++|.+.
T Consensus 208 ~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~------------------------- 262 (405)
T TIGR03449 208 TERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPS------------------------- 262 (405)
T ss_pred HHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCC-------------------------
Confidence 3567789988888888888775 8889999999999998887 7888877210
Q ss_pred hccCchhhhhccCCh-hhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEec-CCCCCCcchhhhhhhcCCce
Q psy17691 540 KAVPNSILWLLKFPA-VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTPV 617 (673)
Q Consensus 540 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~GvPv 617 (673)
.++ ...+.+++..++.|+. ++|.|.|..+.++....|..+|+++- |..++.|++++|||++|+||
T Consensus 263 ------------~~g~~~~~~l~~~~~~~~l~-~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pv 329 (405)
T TIGR03449 263 ------------GSGLATPDALIELAAELGIA-DRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPV 329 (405)
T ss_pred ------------CCcchHHHHHHHHHHHcCCC-ceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCE
Confidence 012 3356788888999995 89999999999999999999999965 45778899999999999999
Q ss_pred eecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691 618 VTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLY 670 (673)
Q Consensus 618 vt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~ 670 (673)
|+........ ++.. |-..+++ .|.+++.+...++.+|++.+++++..
T Consensus 330 i~~~~~~~~e-----~i~~-~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~ 378 (405)
T TIGR03449 330 VAARVGGLPV-----AVAD-GETGLLVDGHDPADWADALARLLDDPRTRIRMGAA 378 (405)
T ss_pred EEecCCCcHh-----hhcc-CCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9976533221 2222 3344554 48999999999999999988887654
No 88
>KOG3060|consensus
Probab=99.23 E-value=1e-09 Score=106.33 Aligned_cols=161 Identities=19% Similarity=0.164 Sum_probs=138.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17691 124 ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDA 203 (673)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 203 (673)
...+..|+.+-|..++++.-...|++..+....|..+...|++++|+++|+..++-+|.+...+-..-.+...+|+--+|
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHH
Confidence 45566889999999999988888999999888999999999999999999999999999988888888888888998899
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc------------cc
Q psy17691 204 LLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG------------FF 271 (673)
Q Consensus 204 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~------------l~ 271 (673)
++.+...++..+++.++|..++.+|...|+|++|.-||++.+-+.|.++-.+..||.++.-.|..+ ++
T Consensus 140 Ik~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 140 IKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888887755 66
Q ss_pred cCCCCHHHHHHHH
Q psy17691 272 IRTDLNSAYFWLL 284 (673)
Q Consensus 272 l~p~~~~a~~~l~ 284 (673)
+.|.+..+++.+-
T Consensus 220 l~~~~~ral~GI~ 232 (289)
T KOG3060|consen 220 LNPKNLRALFGIY 232 (289)
T ss_pred hChHhHHHHHHHH
Confidence 7776555554443
No 89
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.22 E-value=4.5e-10 Score=129.46 Aligned_cols=200 Identities=13% Similarity=0.090 Sum_probs=152.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhh
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV 80 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~ 80 (673)
++++|+..++.+++.+|+...+|+.+|.++.+.++.+++... .++.......++
T Consensus 46 ~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~~~------------------------- 99 (906)
T PRK14720 46 LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-NLIDSFSQNLKW------------------------- 99 (906)
T ss_pred CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-hhhhhcccccch-------------------------
Confidence 367788888888888888888888888877777764443333 222222111111
Q ss_pred hhhcCCCcccccccccCCCCchhHHHHH--HHhcCCCChhHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691 81 SSDFGNHPTSHLMQSVPGMHNKSRVEIF--CYALSPDDGTTFSYIISVL-LLIQVSEAEECYNTALRLCPTHADSLNNLA 157 (673)
Q Consensus 81 ~~~l~~~~~a~~~~~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg 157 (673)
..++.+ ++...+++..++..++.++ ++|+.++|...|+++++.+|+++.+++++|
T Consensus 100 ----------------------~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~A 157 (906)
T PRK14720 100 ----------------------AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLA 157 (906)
T ss_pred ----------------------hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 122222 2333455555665555554 699999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--------HHHHH----
Q psy17691 158 NIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA--------YSNMG---- 225 (673)
Q Consensus 158 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~--------~~~lg---- 225 (673)
..|... ++++|++++.+|++. +...++|.++.+.+++.+..+|.+.+. ...++
T Consensus 158 Y~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~ 222 (906)
T PRK14720 158 TSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRL 222 (906)
T ss_pred HHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchh
Confidence 999999 999999999999887 666779999999999999999987654 22234
Q ss_pred --------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691 226 --------NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263 (673)
Q Consensus 226 --------~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~ 263 (673)
..|...+++++++..++.+|+.+|++..+...++.+|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 78889999999999999999999999999999999998
No 90
>KOG3060|consensus
Probab=99.22 E-value=9.6e-09 Score=99.71 Aligned_cols=150 Identities=21% Similarity=0.186 Sum_probs=133.5
Q ss_pred CCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy17691 114 PDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 192 (673)
Q Consensus 114 p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 192 (673)
|........- ..+-..|++++|+++|+..++.+|.+..++...-.+...+|+--+|++.+.+.++..+.+.++|..++.
T Consensus 83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae 162 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE 162 (289)
T ss_pred CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 5555555433 344458999999999999999999999999888888899999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691 193 VLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD---IQGALQCYSRAIQINPGFADAHSNLASIHK 263 (673)
Q Consensus 193 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~eA~~~~~~Al~l~p~~~~a~~~La~~~~ 263 (673)
+|...|+|++|.-+|++.+-++|.++-.+..+|.+++-+|. ++-|.++|.++++++|.+..+++.+-.+..
T Consensus 163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988775 567999999999999988888887765543
No 91
>KOG0550|consensus
Probab=99.22 E-value=4.4e-11 Score=122.72 Aligned_cols=233 Identities=18% Similarity=0.162 Sum_probs=176.3
Q ss_pred CCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCch---hhhhhhhhhcCCCcccccccccCC-CCchhHHHHHHHh
Q psy17691 36 PNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPG-MHNKSRVEIFCYA 111 (673)
Q Consensus 36 ~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~---~~l~~~~~~l~~~~~a~~~~~~~~-~~~~~a~~~~~~~ 111 (673)
|+.+..|.+.+..++..+++++|.-. .+....++++.. ...+.+...++....+........ .....++......
T Consensus 80 pd~a~yy~nRAa~~m~~~~~~~a~~d-ar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~ 158 (486)
T KOG0550|consen 80 PDNASYYSNRAATLMMLGRFEEALGD-ARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKL 158 (486)
T ss_pred ccchhhhchhHHHHHHHHhHhhcccc-hhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcc
Confidence 78899999999999999999998753 344455555442 233344433333222221111000 0001111111111
Q ss_pred c--CCCChhHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-
Q psy17691 112 L--SPDDGTTF----SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA- 184 (673)
Q Consensus 112 l--~p~~~~~~----~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~- 184 (673)
. +.+.+.++ ....++...|++++|...--..+++++.+.++++..|.+++...+.+.|+..|++++.++|++.
T Consensus 159 ~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~ 238 (486)
T KOG0550|consen 159 APSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQK 238 (486)
T ss_pred cccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhh
Confidence 1 11112222 2334566799999999999999999999999999999999999999999999999999999874
Q ss_pred -----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691 185 -----------AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF----ADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249 (673)
Q Consensus 185 -----------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p 249 (673)
..+-.-|+-.++.|+|.+|.++|..+|.++|++ +.+|.|+|.+..++|+..+|+...+.|+++++
T Consensus 239 sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 239 SKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred HHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence 456677888999999999999999999999986 56799999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCc
Q psy17691 250 GFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 250 ~~~~a~~~La~~~~~~g~~~ 269 (673)
....++...|.||..+++++
T Consensus 319 syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALEKWE 338 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987
No 92
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.21 E-value=3e-10 Score=121.49 Aligned_cols=112 Identities=16% Similarity=0.114 Sum_probs=105.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy17691 120 FSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGK 199 (673)
Q Consensus 120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 199 (673)
...+..++..|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|++..+++++|.++..+|+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 44566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691 200 LTDALLHYKEAIRIQPSFADAYSNMGNTLKEM 231 (673)
Q Consensus 200 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 231 (673)
+++|+..|+++++++|++..+...++.|..++
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999988886665
No 93
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.20 E-value=4.9e-10 Score=102.80 Aligned_cols=99 Identities=16% Similarity=0.095 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17691 117 GTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ 196 (673)
Q Consensus 117 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 196 (673)
...|.++..++..|++++|+..|+-+..++|.+...|++||.++..+|++++|+..|.+++.++|+++..++++|.+++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34566777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q psy17691 197 QGKLTDALLHYKEAIRIQP 215 (673)
Q Consensus 197 ~g~~~eA~~~~~~al~~~p 215 (673)
.|+.+.|.+.|+.++...-
T Consensus 116 lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICG 134 (157)
T ss_pred cCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999863
No 94
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.19 E-value=2.5e-10 Score=121.62 Aligned_cols=160 Identities=18% Similarity=0.129 Sum_probs=124.3
Q ss_pred ccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccC
Q psy17691 466 RQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVP 543 (673)
Q Consensus 466 r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (673)
|+.++.+.+.++|++++++ .|..+.+++++.++.++.|+.+++++|..
T Consensus 194 ~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~------------------------------ 243 (375)
T cd03821 194 RRKFPILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPD------------------------------ 243 (375)
T ss_pred hhhccCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCC------------------------------
Confidence 5667788888888888865 48889999999999999999999998810
Q ss_pred chhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCC
Q psy17691 544 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPG 622 (673)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g 622 (673)
++.....+.......|+. ++|.|.|.++.++....|..+|+++-|. .++-|++.+|||++|+|||+-..
T Consensus 244 ---------~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~ 313 (375)
T cd03821 244 ---------EGGYRAELKQIAAALGLE-DRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDK 313 (375)
T ss_pred ---------CcchHHHHHHHHHhcCcc-ceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCC
Confidence 112233444445788884 8999999999999999999999996654 67889999999999999999776
Q ss_pred CcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 623 ETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 623 ~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
..... ++.. +..-++..+.+++++...++.+|++.+++++...
T Consensus 314 ~~~~~-----~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 356 (375)
T cd03821 314 VPWQE-----LIEY-GCGWVVDDDVDALAAALRRALELPQRLKAMGENG 356 (375)
T ss_pred CCHHH-----Hhhc-CceEEeCCChHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 54433 2333 3333555667999999999999998888877643
No 95
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=1.6e-09 Score=108.17 Aligned_cols=197 Identities=17% Similarity=0.123 Sum_probs=159.6
Q ss_pred CCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcC
Q psy17691 34 GQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALS 113 (673)
Q Consensus 34 g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~ 113 (673)
++++..++.+.+|..+...|+.+.|+.. ...+...|+.. . +
T Consensus 64 ~d~~t~e~~ltLGnLfRsRGEvDRAIRi--HQ~L~~spdlT--------------------------~-----------~ 104 (389)
T COG2956 64 EDPETFEAHLTLGNLFRSRGEVDRAIRI--HQTLLESPDLT--------------------------F-----------E 104 (389)
T ss_pred cCchhhHHHHHHHHHHHhcchHHHHHHH--HHHHhcCCCCc--------------------------h-----------H
Confidence 4566777888888888888888877641 11111111110 0 0
Q ss_pred CCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHH
Q psy17691 114 PDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF-----AAAHS 188 (673)
Q Consensus 114 p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~-----~~~~~ 188 (673)
...-..+.++..++..|-++.|+..|....+...--..+...|-.+|....+|++|++..++..++.+.. +..+.
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC 184 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC 184 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 0001122445677889999999999999988665667899999999999999999999999999998876 56788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCC
Q psy17691 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF-ADAHSNLASIHKDSGK 267 (673)
Q Consensus 189 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~-~~a~~~La~~~~~~g~ 267 (673)
.|+..+....+.++|+..++++++-+|+...+-..+|.++...|+|++|++.++.+++.+|+. +.+.-.|..||..+|+
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999987 4677889999999999
Q ss_pred Cc
Q psy17691 268 RG 269 (673)
Q Consensus 268 ~~ 269 (673)
.+
T Consensus 265 ~~ 266 (389)
T COG2956 265 PA 266 (389)
T ss_pred HH
Confidence 75
No 96
>KOG2076|consensus
Probab=99.16 E-value=1.3e-09 Score=121.68 Aligned_cols=131 Identities=21% Similarity=0.302 Sum_probs=126.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17691 119 TFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG 198 (673)
Q Consensus 119 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 198 (673)
.+..+..++..|++++|+..+.++++.+|.++.+|+.||.+|.++|+.+++....-.|--++|++.+.|..++....++|
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 34555667778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691 199 KLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249 (673)
Q Consensus 199 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p 249 (673)
++++|.-+|.+|++.+|.+.......+.+|.++|++..|...|.+++++.|
T Consensus 222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999999999999
No 97
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.15 E-value=4.4e-10 Score=122.14 Aligned_cols=165 Identities=13% Similarity=0.114 Sum_probs=123.3
Q ss_pred cccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcc---cCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691 467 QQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAV---PNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA 541 (673)
Q Consensus 467 ~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~---p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (673)
+..+.+.+.++|++++++ .|..+..++++.++.+.. |+.+|+++|.. ....
T Consensus 203 ~~~~~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~---~~~~--------------------- 258 (392)
T cd03805 203 GLLIPKSGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGY---DPRV--------------------- 258 (392)
T ss_pred cccccCCCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCC---CCCC---------------------
Confidence 344566778888888876 588999999999998887 89999998821 0000
Q ss_pred cCchhhhhccCChhhhhhHHHHHHH-cCCCCCeEEeccCcChHHHHHhcccccEEec-CCCCCCcchhhhhhhcCCceee
Q psy17691 542 VPNSILWLLKFPAVGEANIQATAQA-LGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTPVVT 619 (673)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~GvPvvt 619 (673)
+ .+..-.+.+++.+.+ .|+. ++|.|.|..+.++....|..+|+++- |..++-|++.+|||++|+|||+
T Consensus 259 -~--------~~~~~~~~l~~~~~~~~~l~-~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~ 328 (392)
T cd03805 259 -A--------ENVEYLEELQRLAEELLLLE-DQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIA 328 (392)
T ss_pred -c--------hhHHHHHHHHHHHHHhcCCC-ceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEE
Confidence 0 001123567888888 8995 99999999999999999999999975 4566779999999999999998
Q ss_pred cCCCcchhhhHHHHHHhcCCCc-cccCCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 620 LPGETLASRVAASQLATLGCPE-LIARTHKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 620 ~~g~~~~~r~~~~~l~~~gl~~-~ia~~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
........ ++.. |-.. ++..|.+++.+....+..|++.+.+++...
T Consensus 329 s~~~~~~e-----~i~~-~~~g~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~a 375 (392)
T cd03805 329 CNSGGPLE-----TVVD-GETGFLCEPTPEEFAEAMLKLANDPDLADRMGAAG 375 (392)
T ss_pred ECCCCcHH-----Hhcc-CCceEEeCCCHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 76543332 2222 2233 344689999999999999999888887643
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.12 E-value=6.1e-09 Score=111.76 Aligned_cols=207 Identities=16% Similarity=0.067 Sum_probs=143.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhhhhcCCCccccccc
Q psy17691 15 LQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQ 94 (673)
Q Consensus 15 l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~~~l~~~~~a~~~~ 94 (673)
.||+++.+|..+|.++...|+++.+..-+.......... .+.... ....+......++
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~-------------~~~~a~~~~~~g~-------- 58 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAAR-ATERER-------------AHVEALSAWIAGD-------- 58 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccC-CCHHHH-------------HHHHHHHHHHcCC--------
Confidence 389999999999999999998666433322222211111 000000 0001111111121
Q ss_pred ccCCCCchhHHHHH--HHhcCCCChhHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy17691 95 SVPGMHNKSRVEIF--CYALSPDDGTTFSYIISVLL----LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEE 168 (673)
Q Consensus 95 ~~~~~~~~~a~~~~--~~~l~p~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~e 168 (673)
...+...+ .+...|++...+.....+.. .+..+.+...++.....+|....++..+|.++..+|++++
T Consensus 59 ------~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 59 ------LPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred ------HHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 12222222 34457777765543222222 3455555555555445677788888899999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691 169 ATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA----DAYSNMGNTLKEMQDIQGALQCYSRA 244 (673)
Q Consensus 169 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~A 244 (673)
|+..++++++++|++..++..+|.++...|++++|+.+++++++..|.++ ..+..+|.++..+|++++|+..|+++
T Consensus 133 A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 133 AEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987543 34668999999999999999999999
Q ss_pred HHhCC
Q psy17691 245 IQINP 249 (673)
Q Consensus 245 l~l~p 249 (673)
+...|
T Consensus 213 ~~~~~ 217 (355)
T cd05804 213 IAPSA 217 (355)
T ss_pred hcccc
Confidence 87666
No 99
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.11 E-value=4e-10 Score=120.18 Aligned_cols=158 Identities=20% Similarity=0.284 Sum_probs=123.3
Q ss_pred ccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccC
Q psy17691 466 RQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVP 543 (673)
Q Consensus 466 r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (673)
|+.++++.+.+++++++++ .|..+.++++|.++.+..|+.+++++|
T Consensus 193 ~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G-------------------------------- 240 (374)
T cd03817 193 RRKLGIPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVG-------------------------------- 240 (374)
T ss_pred HHhcCCCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEe--------------------------------
Confidence 4556777777777777765 478889999999999888999999987
Q ss_pred chhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCC
Q psy17691 544 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPG 622 (673)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g 622 (673)
.+...+.+++...+.++. ++|.|.|.++.++....|+.+|+++.|. ..+.|++++|||++|+|||+...
T Consensus 241 ---------~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~ 310 (374)
T cd03817 241 ---------DGPEREELEELARELGLA-DRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDA 310 (374)
T ss_pred ---------CCchHHHHHHHHHHcCCC-CcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCC
Confidence 233455677777888884 8999999999999999999999998875 56789999999999999999776
Q ss_pred CcchhhhHHHHHHhcCCCccccCCH-HHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 623 ETLASRVAASQLATLGCPELIARTH-KEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 623 ~~~~~r~~~~~l~~~gl~~~ia~~~-~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
..+.. ++.. |-.+++..+. +++++...++.+|++.+++++...
T Consensus 311 ~~~~~-----~i~~-~~~g~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 354 (374)
T cd03817 311 PGLPD-----LVAD-GENGFLFPPGDEALAEALLRLLQDPELRRRLSKNA 354 (374)
T ss_pred CChhh-----heec-CceeEEeCCCCHHHHHHHHHHHhChHHHHHHHHHH
Confidence 54432 2222 2334444433 399999999999999888877654
No 100
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.11 E-value=2.3e-09 Score=102.23 Aligned_cols=135 Identities=20% Similarity=0.188 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHH
Q psy17691 131 QVSEAEECYNTALRLCPTH--ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALL 205 (673)
Q Consensus 131 ~~~~A~~~~~~al~~~p~~--~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~ 205 (673)
.+..+...+.+.++.++.. ..+++.+|.++..+|++++|+..|++++.+.|+. ..++.++|.++...|++++|++
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 3555555565555555544 6677899999999999999999999999887663 4589999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691 206 HYKEAIRIQPSFADAYSNMGNTLK-------EMQDIQ-------GALQCYSRAIQINPGFADAHSNLASIHKDSGKR 268 (673)
Q Consensus 206 ~~~~al~~~p~~~~~~~~lg~~~~-------~~g~~~-------eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~ 268 (673)
.|+++++++|.....+.++|.++. .+|+++ +|+.+|++++..+|.+.. ..+..+...|++
T Consensus 94 ~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~---~~~~~~~~~~~~ 167 (168)
T CHL00033 94 YYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI---EAQNWLKITGRF 167 (168)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH---HHHHHHHHhcCC
Confidence 999999999999998989998888 777766 556666677777876542 223334444544
No 101
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.11 E-value=4.2e-09 Score=111.10 Aligned_cols=133 Identities=20% Similarity=0.159 Sum_probs=70.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691 125 SVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL 204 (673)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 204 (673)
..+..|++++|+..++..++..|+++..+...+.++.+.|+.++|.+.+++++.++|+.+..+.++|..|.+.|++.+|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691 205 LHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSN 257 (673)
Q Consensus 205 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~ 257 (673)
..+++.+..+|+++..|..||..|..+|+..+|...+.+.+.+......+...
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~ 447 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIF 447 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHH
Confidence 55555555555555555555555555555555555555555444444444333
No 102
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.11 E-value=4.1e-10 Score=120.43 Aligned_cols=155 Identities=19% Similarity=0.229 Sum_probs=122.0
Q ss_pred ccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccC
Q psy17691 466 RQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVP 543 (673)
Q Consensus 466 r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (673)
+...+.+.+.+++++++++ .|..+.+++++..+.+..|+.+++++|
T Consensus 183 ~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG-------------------------------- 230 (358)
T cd03812 183 RRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVG-------------------------------- 230 (358)
T ss_pred HHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEe--------------------------------
Confidence 4456777788888888876 588999999999999999999999998
Q ss_pred chhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCC
Q psy17691 544 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPG 622 (673)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g 622 (673)
+++..+.+++.+.+.|+. ++|.|.|. .++....|+.+|+++-|. .++.|++.+|||++|+|||+-..
T Consensus 231 ---------~g~~~~~~~~~~~~~~~~-~~v~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~ 298 (358)
T cd03812 231 ---------DGELEEEIKKKVKELGLE-DKVIFLGV--RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDT 298 (358)
T ss_pred ---------CCchHHHHHHHHHhcCCC-CcEEEecc--cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcC
Confidence 344556788888888984 89999998 456677888999997754 56789999999999999998765
Q ss_pred CcchhhhHHHHHHhcCCCcccc-CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691 623 ETLASRVAASQLATLGCPELIA-RTHKEYQDIAIRLGTDRDYCEKALLY 670 (673)
Q Consensus 623 ~~~~~r~~~~~l~~~gl~~~ia-~~~~~yv~~a~~la~d~~~~~~~~~~ 670 (673)
..... ++.. +..-++. .+.+++.+...++.+|++.+..++..
T Consensus 299 ~~~~~-----~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~ 341 (358)
T cd03812 299 ITKEV-----DLTD-LVKFLSLDESPEIWAEEILKLKSEDRRERSSESI 341 (358)
T ss_pred Cchhh-----hhcc-CccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhh
Confidence 44322 3333 3333444 35699999999999999999877653
No 103
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.10 E-value=2.2e-09 Score=95.39 Aligned_cols=107 Identities=23% Similarity=0.322 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q psy17691 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF---ADAYSN 223 (673)
Q Consensus 150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~ 223 (673)
+++++.+|..+..+|++++|++.|+++++.+|++ ..+++.+|.++...|++++|+..|++++...|++ ..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4567888999999999999999999999888876 5688889999999999999999999999888775 578889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691 224 MGNTLKEMQDIQGALQCYSRAIQINPGFADAHS 256 (673)
Q Consensus 224 lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~ 256 (673)
+|.++.++|++++|+.+++++++..|++..+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999888776543
No 104
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.10 E-value=9.1e-10 Score=118.54 Aligned_cols=156 Identities=17% Similarity=0.208 Sum_probs=119.8
Q ss_pred cccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhcc
Q psy17691 465 SRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAV 542 (673)
Q Consensus 465 ~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (673)
.|++++++++..++++++++ .|..+.++++|.++.++ ++.+|+++|
T Consensus 187 ~~~~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~-~~~~l~i~G------------------------------- 234 (371)
T cd04962 187 LKRRLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRKE-VPARLLLVG------------------------------- 234 (371)
T ss_pred HHHhcCCCCCCeEEEEecccccccCHHHHHHHHHHHHhc-CCceEEEEc-------------------------------
Confidence 45678888888888888865 48899999999998766 567888887
Q ss_pred CchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecC
Q psy17691 543 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLP 621 (673)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~ 621 (673)
.+...+.+++.+.+.|+. ++|.|.|..+ +....|..+|+++-|. .++.|++++|||++|+|||+-.
T Consensus 235 ----------~g~~~~~~~~~~~~~~~~-~~v~~~g~~~--~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~ 301 (371)
T cd04962 235 ----------DGPERSPAERLARELGLQ-DDVLFLGKQD--HVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASN 301 (371)
T ss_pred ----------CCcCHHHHHHHHHHcCCC-ceEEEecCcc--cHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeC
Confidence 334456788888889985 8999999653 5667788999997765 6677999999999999999865
Q ss_pred CCcchhhhHHHHHHhcCCCccccC--CHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 622 GETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 622 g~~~~~r~~~~~l~~~gl~~~ia~--~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
...... ++.. |-..+++. |.+++++...++.+|++.+.+++...
T Consensus 302 ~~~~~e-----~i~~-~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~ 347 (371)
T cd04962 302 AGGIPE-----VVKH-GETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAA 347 (371)
T ss_pred CCCchh-----hhcC-CCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 543322 2222 33444443 78999999999999999988877653
No 105
>KOG1156|consensus
Probab=99.10 E-value=5.1e-09 Score=113.21 Aligned_cols=199 Identities=16% Similarity=0.155 Sum_probs=156.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhh
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV 80 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~ 80 (673)
+|.+.++..++.|+..|++++.+...|..+..+|+.+.+..+..+|..
T Consensus 22 QYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr-------------------------------- 69 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR-------------------------------- 69 (700)
T ss_pred HHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc--------------------------------
Confidence 466777888888889999999999999999999965555544444422
Q ss_pred hhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691 81 SSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANI 159 (673)
Q Consensus 81 ~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~ 159 (673)
.++....+|...+.+++ ..+|++|+.+|+.|+.+.|++..++..++.+
T Consensus 70 -------------------------------~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslL 118 (700)
T KOG1156|consen 70 -------------------------------NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLL 118 (700)
T ss_pred -------------------------------cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34556677877777766 6799999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH-----H------------
Q psy17691 160 KREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ---PSFA-----D------------ 219 (673)
Q Consensus 160 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---p~~~-----~------------ 219 (673)
..++++++-....-.+.++..|.....|..++..+.-.|++..|....+...+.. |..- +
T Consensus 119 Q~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~ 198 (700)
T KOG1156|consen 119 QIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEA 198 (700)
T ss_pred HHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999988877666554 2211 1
Q ss_pred ----------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691 220 ----------------------AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIH 262 (673)
Q Consensus 220 ----------------------~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~ 262 (673)
.....|.++.+++++++|...|...+..+|++.+.+..+-.++
T Consensus 199 g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 199 GSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKAL 263 (700)
T ss_pred ccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHH
Confidence 2223456667777777777777777777777777666665555
No 106
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.10 E-value=1.9e-09 Score=103.24 Aligned_cols=117 Identities=19% Similarity=0.236 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691 149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225 (673)
Q Consensus 149 ~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 225 (673)
...+++.+|..+...|++++|+.+|+++++..|+. ..++.++|.++...|++++|+.+|+++++..|++...+..+|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34455666666666666666666666666554432 345666666666666666666666666666666666666666
Q ss_pred HHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691 226 NTLKEMQD--------------IQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR 268 (673)
Q Consensus 226 ~~~~~~g~--------------~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~ 268 (673)
.++..+|+ +++|+++++++++.+|++ +...+..+...|+.
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCcc
Confidence 66665555 678888999999888886 44455555555543
No 107
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.09 E-value=1.5e-09 Score=116.67 Aligned_cols=140 Identities=19% Similarity=0.158 Sum_probs=111.4
Q ss_pred cccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhhhhhHHH
Q psy17691 483 QLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQA 562 (673)
Q Consensus 483 ~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (673)
...|..+.+++++.++.++.|+.+|+++| .+...+.+++
T Consensus 198 ~~~K~~~~li~a~~~l~~~~~~~~l~ivG-----------------------------------------~g~~~~~~~~ 236 (367)
T cd05844 198 VEKKGPLLLLEAFARLARRVPEVRLVIIG-----------------------------------------DGPLLAALEA 236 (367)
T ss_pred ccccChHHHHHHHHHHHHhCCCeEEEEEe-----------------------------------------CchHHHHHHH
Confidence 45689999999999999999999999988 3444567888
Q ss_pred HHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCC-------CCCcchhhhhhhcCCceeecCCCcchhhhHHHHHH
Q psy17691 563 TAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-------CNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLA 635 (673)
Q Consensus 563 ~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p-------~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~ 635 (673)
.+.+.|+. ++|.|.|.++.++....|..+|+++-|.- ++.|++.+|||++|+|||+-....... ++.
T Consensus 237 ~~~~~~~~-~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e-----~i~ 310 (367)
T cd05844 237 LARALGLG-GRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPE-----AVE 310 (367)
T ss_pred HHHHcCCC-CeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchh-----hee
Confidence 88899984 89999999999999999999999977642 466999999999999999866543322 222
Q ss_pred hcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691 636 TLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLY 670 (673)
Q Consensus 636 ~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~ 670 (673)
. |-..++. .|.+++++...++.+|++.+.+++..
T Consensus 311 ~-~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~ 346 (367)
T cd05844 311 D-GETGLLVPEGDVAALAAALGRLLADPDLRARMGAA 346 (367)
T ss_pred c-CCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 2 2223443 48899999999999999988877653
No 108
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.09 E-value=3.6e-10 Score=107.96 Aligned_cols=160 Identities=14% Similarity=0.138 Sum_probs=125.1
Q ss_pred cccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhc-ccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691 465 SRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKA-VPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA 541 (673)
Q Consensus 465 ~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (673)
.|...+.+.+.+++++++++. |....+++++..+..+ .|+..++++|
T Consensus 5 ~~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G------------------------------ 54 (172)
T PF00534_consen 5 LREKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVG------------------------------ 54 (172)
T ss_dssp HHHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEES------------------------------
T ss_pred HHHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEc------------------------------
Confidence 456677888888888888654 8888999999998875 8999999987
Q ss_pred cCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeec
Q psy17691 542 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTL 620 (673)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~ 620 (673)
.+.....+.......++ .+++.|.+..+.++....|+.+||++-|. ..+.|++.+|||++|+|||+-
T Consensus 55 -----------~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~ 122 (172)
T PF00534_consen 55 -----------DGEYKKELKNLIEKLNL-KENIIFLGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIAS 122 (172)
T ss_dssp -----------HCCHHHHHHHHHHHTTC-GTTEEEEESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEE
T ss_pred -----------ccccccccccccccccc-cccccccccccccccccccccceeccccccccccccccccccccccceeec
Confidence 23345567888888898 48999999999899999999999998876 568899999999999999997
Q ss_pred CCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhhhc
Q psy17691 621 PGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLYHE 672 (673)
Q Consensus 621 ~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~~ 672 (673)
....+.. ++.. +.+.++. .+.++.++...++..|++.++.|+++..
T Consensus 123 ~~~~~~e-----~~~~-~~~g~~~~~~~~~~l~~~i~~~l~~~~~~~~l~~~~~ 170 (172)
T PF00534_consen 123 DIGGNNE-----IIND-GVNGFLFDPNDIEELADAIEKLLNDPELRQKLGKNAR 170 (172)
T ss_dssp SSTHHHH-----HSGT-TTSEEEESTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCce-----eecc-ccceEEeCCCCHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 7544433 2222 3344554 3679999999999999999999998764
No 109
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.08 E-value=1.2e-09 Score=118.18 Aligned_cols=152 Identities=12% Similarity=0.118 Sum_probs=116.2
Q ss_pred cCCCCCcEEEecCCccc--ccChhhHHHHHHHHhccc----CeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhcc
Q psy17691 469 YGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVP----NSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAV 542 (673)
Q Consensus 469 ~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (673)
...+++.+++++++++. |..+..++++.+++++.| +.+|+++|
T Consensus 188 ~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G------------------------------- 236 (374)
T TIGR03088 188 DFFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVG------------------------------- 236 (374)
T ss_pred hcCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEec-------------------------------
Confidence 34466777888888665 888899999999998876 67898887
Q ss_pred CchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEec-CCCCCCcchhhhhhhcCCceeecC
Q psy17691 543 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTPVVTLP 621 (673)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~GvPvvt~~ 621 (673)
.+...+.+++.+++.|+. +++.|.|. .++....|..+|+++- |..++.|++.+|||+||+|||+-.
T Consensus 237 ----------~g~~~~~~~~~~~~~~~~-~~v~~~g~--~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~ 303 (374)
T TIGR03088 237 ----------DGPARGACEQMVRAAGLA-HLVWLPGE--RDDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIATA 303 (374)
T ss_pred ----------CCchHHHHHHHHHHcCCc-ceEEEcCC--cCCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEEcC
Confidence 344556788889999994 88999985 4678888899999976 456788999999999999999854
Q ss_pred CCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691 622 GETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLY 670 (673)
Q Consensus 622 g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~ 670 (673)
-..... ++. -|...++. .|.+++++....+.+|++.+..++..
T Consensus 304 ~~g~~e-----~i~-~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~ 348 (374)
T TIGR03088 304 VGGNPE-----LVQ-HGVTGALVPPGDAVALARALQPYVSDPAARRAHGAA 348 (374)
T ss_pred CCCcHH-----Hhc-CCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 322221 222 23444443 58999999999999999988777543
No 110
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.07 E-value=1.2e-09 Score=119.35 Aligned_cols=144 Identities=12% Similarity=-0.019 Sum_probs=113.4
Q ss_pred CCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhc
Q psy17691 473 EDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLL 550 (673)
Q Consensus 473 ~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (673)
++.+++++++++ .|..+.+++++..+.+..|+.+|+++|
T Consensus 191 ~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G--------------------------------------- 231 (398)
T cd03796 191 NDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGG--------------------------------------- 231 (398)
T ss_pred CCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEe---------------------------------------
Confidence 456778888876 588889999999998899999999988
Q ss_pred cCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecC-CCCCCcchhhhhhhcCCceeecCCCcchhhh
Q psy17691 551 KFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPVVTLPGETLASRV 629 (673)
Q Consensus 551 ~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~ 629 (673)
.++..+.+++.+++.|++ ++|.|.|..+.++....|..+|+++-| ..++-|.+++|||++|+|||+-.......
T Consensus 232 --~g~~~~~l~~~~~~~~l~-~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~~e-- 306 (398)
T cd03796 232 --DGPKRILLEEMREKYNLQ-DRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGIPE-- 306 (398)
T ss_pred --CCchHHHHHHHHHHhCCC-CeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCCchh--
Confidence 344556788889999995 899999999999999999999999654 56677999999999999999865443332
Q ss_pred HHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHH
Q psy17691 630 AASQLATLGCPELIARTHKEYQDIAIRLGTDRDYC 664 (673)
Q Consensus 630 ~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~ 664 (673)
++.. |-.-++..|.+++++...++.++....
T Consensus 307 ---~i~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~ 337 (398)
T cd03796 307 ---VLPP-DMILLAEPDVESIVRKLEEAISILRTG 337 (398)
T ss_pred ---heeC-CceeecCCCHHHHHHHHHHHHhChhhh
Confidence 2222 212244558899999999888876544
No 111
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.06 E-value=2e-09 Score=89.79 Aligned_cols=99 Identities=35% Similarity=0.539 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691 152 SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM 231 (673)
Q Consensus 152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 231 (673)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|++.++++++..|.+...+..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 56788888899999999999999999999888888899999999999999999999999999888888899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q psy17691 232 QDIQGALQCYSRAIQINPG 250 (673)
Q Consensus 232 g~~~eA~~~~~~Al~l~p~ 250 (673)
|++++|..+++++++..|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999998887763
No 112
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.06 E-value=1.8e-09 Score=117.16 Aligned_cols=163 Identities=16% Similarity=0.113 Sum_probs=115.0
Q ss_pred cccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhcc
Q psy17691 465 SRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAV 542 (673)
Q Consensus 465 ~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (673)
.|+.+|++.+..++++++++ .|-.+.++++|.++.++.|+.+|+++|.....+.+
T Consensus 183 ~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~----------------------- 239 (380)
T PRK15484 183 LRQQLNISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKG----------------------- 239 (380)
T ss_pred HHHHhCCCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCcccccc-----------------------
Confidence 46778888777777777765 48889999999999999999999998821000000
Q ss_pred CchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC--CCCCcchhhhhhhcCCceeec
Q psy17691 543 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP--LCNGHTTSMDVLWTGTPVVTL 620 (673)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~--p~~g~~t~~eal~~GvPvvt~ 620 (673)
-...-.+.+++.....| ++|+|.|..+.++....|+.+|+++-|. .++-|++.+|||++|+|||+-
T Consensus 240 ---------~~~~~~~~l~~~~~~l~---~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s 307 (380)
T PRK15484 240 ---------EKAAYQKKVLEAAKRIG---DRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLAS 307 (380)
T ss_pred ---------chhHHHHHHHHHHHhcC---CcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEe
Confidence 00111234444444544 5799999999999999999999997654 456689999999999999997
Q ss_pred CCCcchhhhHHHHHHhcCCCcc-c--cCCHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691 621 PGETLASRVAASQLATLGCPEL-I--ARTHKEYQDIAIRLGTDRDYCEKALL 669 (673)
Q Consensus 621 ~g~~~~~r~~~~~l~~~gl~~~-i--a~~~~~yv~~a~~la~d~~~~~~~~~ 669 (673)
....+.. ++.. |...+ + ..|.+++.+...++.+|++. .++..
T Consensus 308 ~~gg~~E-----iv~~-~~~G~~l~~~~d~~~la~~I~~ll~d~~~-~~~~~ 352 (380)
T PRK15484 308 TKGGITE-----FVLE-GITGYHLAEPMTSDSIISDINRTLADPEL-TQIAE 352 (380)
T ss_pred CCCCcHh-----hccc-CCceEEEeCCCCHHHHHHHHHHHHcCHHH-HHHHH
Confidence 5433222 2222 33444 3 35899999999999999975 44443
No 113
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.06 E-value=1.6e-09 Score=117.24 Aligned_cols=163 Identities=17% Similarity=0.110 Sum_probs=121.3
Q ss_pred ccccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691 464 TSRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA 541 (673)
Q Consensus 464 ~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (673)
..|+++|++.+..++++++|+. |..+..++++..+.+..|+.+|+++|.. .
T Consensus 179 ~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g---~------------------------ 231 (372)
T cd03792 179 YILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSG---A------------------------ 231 (372)
T ss_pred HHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCC---C------------------------
Confidence 4567799999998889888775 8899999999999988899999998821 0
Q ss_pred cCchhhhhccCChhh-hhhHHHHHHHcCCCCCeEEeccCc--ChHHHHHhcccccEEecC-CCCCCcchhhhhhhcCCce
Q psy17691 542 VPNSILWLLKFPAVG-EANIQATAQALGLDQHRILFSNVA--AKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPV 617 (673)
Q Consensus 542 ~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~rv~~~~~~--~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~GvPv 617 (673)
..... .+.+++..+..|+. ++|.|.|.. +.++....|+.+|+++-| ..++-|.+++|||++|+||
T Consensus 232 ----------~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pv 300 (372)
T cd03792 232 ----------TDDPEGWIVYEEVLEYAEGD-PDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPV 300 (372)
T ss_pred ----------CCCchhHHHHHHHHHHhCCC-CCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCE
Confidence 00111 12233333356774 789998865 778888999999999765 4667799999999999999
Q ss_pred eecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691 618 VTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLY 670 (673)
Q Consensus 618 vt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~ 670 (673)
|+-....... ++ .-|...+++.+.++..+...++.+|++.+++++..
T Consensus 301 v~s~~~~~~~-----~i-~~~~~g~~~~~~~~~a~~i~~ll~~~~~~~~~~~~ 347 (372)
T cd03792 301 IAGPVGGIPL-----QI-EDGETGFLVDTVEEAAVRILYLLRDPELRRKMGAN 347 (372)
T ss_pred EEcCCCCchh-----hc-ccCCceEEeCCcHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9865433321 22 22555677788888888888899999998887654
No 114
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.05 E-value=2.4e-09 Score=117.47 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=120.7
Q ss_pred ccccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691 464 TSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA 541 (673)
Q Consensus 464 ~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (673)
..|+.+|++.+.+++++++++ .|..+..++++.++ +..|+.+|+++|
T Consensus 218 ~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l-~~~~~~~l~ivG------------------------------ 266 (412)
T PRK10307 218 ALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRL-RDRPDLIFVICG------------------------------ 266 (412)
T ss_pred HHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHh-ccCCCeEEEEEC------------------------------
Confidence 356788999988888888876 58788899998766 556899999988
Q ss_pred cCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCC-CC----cchhhhhhhcCCc
Q psy17691 542 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NG----HTTSMDVLWTGTP 616 (673)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~-~g----~~t~~eal~~GvP 616 (673)
+++.++.+++.++++|++ +|.|+|..+.++....|+.+||++-|.-. ++ ++...|+|++|+|
T Consensus 267 -----------~g~~~~~l~~~~~~~~l~--~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~P 333 (412)
T PRK10307 267 -----------QGGGKARLEKMAQCRGLP--NVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRN 333 (412)
T ss_pred -----------CChhHHHHHHHHHHcCCC--ceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCC
Confidence 455567788888999984 69999999999999999999999766533 32 3457899999999
Q ss_pred eeecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 617 VVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 617 vvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
||+-..... .+ ..+.. + ..++. .|.+++.+...+|..|++.+++++...
T Consensus 334 Vi~s~~~g~--~~-~~~i~--~-~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a 384 (412)
T PRK10307 334 VVATAEPGT--EL-GQLVE--G-IGVCVEPESVEALVAAIAALARQALLRPKLGTVA 384 (412)
T ss_pred EEEEeCCCc--hH-HHHHh--C-CcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 998643211 00 11333 3 33433 589999999999999999998887653
No 115
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.03 E-value=1.6e-09 Score=118.88 Aligned_cols=110 Identities=17% Similarity=0.140 Sum_probs=91.6
Q ss_pred cCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchh
Q psy17691 469 YGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSI 546 (673)
Q Consensus 469 ~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (673)
.+++.+.+++++++++ .|.....+++++++++..|+.+|+++|
T Consensus 392 ~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVG----------------------------------- 436 (578)
T PRK15490 392 QKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVG----------------------------------- 436 (578)
T ss_pred hccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEe-----------------------------------
Confidence 4556677788888875 488999999999999999999999998
Q ss_pred hhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCC
Q psy17691 547 LWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPG 622 (673)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g 622 (673)
+++.++.+++..+++|+. ++|.|+|.. ++....|..+|||+-|. .++-|++++|||++|+|||+-.-
T Consensus 437 ------dG~~~eeLk~la~elgL~-d~V~FlG~~--~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdv 504 (578)
T PRK15490 437 ------DGDLRAEAQKRAEQLGIL-ERILFVGAS--RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPA 504 (578)
T ss_pred ------CchhHHHHHHHHHHcCCC-CcEEECCCh--hhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCC
Confidence 455667899999999995 899999974 56667788999997654 55669999999999999998654
No 116
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.03 E-value=3.2e-09 Score=116.60 Aligned_cols=151 Identities=14% Similarity=0.061 Sum_probs=116.4
Q ss_pred CCcEEEecCCcc--cccChhhHHHHHHHHhc------ccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCc
Q psy17691 473 EDAIVYCNFNQL--YKIDPSTLQMWVNVLKA------VPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPN 544 (673)
Q Consensus 473 ~~~~~~~~~~~~--~K~~~~~~~~~~~il~~------~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (673)
++..++++.+++ .|..+.+++++..+.+. .|+.+|+++|
T Consensus 230 ~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG--------------------------------- 276 (415)
T cd03816 230 ERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITG--------------------------------- 276 (415)
T ss_pred CCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEe---------------------------------
Confidence 344566666654 48888999999988753 4789999988
Q ss_pred hhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCC----CCCcchhhhhhhcCCceeec
Q psy17691 545 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL----CNGHTTSMDVLWTGTPVVTL 620 (673)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p----~~g~~t~~eal~~GvPvvt~ 620 (673)
.|+.++.+++.+++.|++ +.+.|.|.++.++....|..+||++-+.+ ++-+++++|||+||+|||+-
T Consensus 277 --------~G~~~~~l~~~~~~~~l~-~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s 347 (415)
T cd03816 277 --------KGPLKEKYLERIKELKLK-KVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAL 347 (415)
T ss_pred --------cCccHHHHHHHHHHcCCC-cEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEe
Confidence 455678899999999994 66666788999999999999999974222 34589999999999999996
Q ss_pred CCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCC---HHHHHHHHhhh
Q psy17691 621 PGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTD---RDYCEKALLYH 671 (673)
Q Consensus 621 ~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d---~~~~~~~~~~~ 671 (673)
...... .++.. |-..++..|.+++.+...+|.+| ++.+.+|+...
T Consensus 348 ~~~~~~-----eiv~~-~~~G~lv~d~~~la~~i~~ll~~~~~~~~~~~m~~~~ 395 (415)
T cd03816 348 DFKCID-----ELVKH-GENGLVFGDSEELAEQLIDLLSNFPNRGKLNSLKKGA 395 (415)
T ss_pred CCCCHH-----HHhcC-CCCEEEECCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 553222 23433 55566668999999999999999 99999887654
No 117
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=7.5e-09 Score=103.95 Aligned_cols=123 Identities=19% Similarity=0.158 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q psy17691 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG---KLTDALLHY 207 (673)
Q Consensus 131 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~ 207 (673)
+.++-+.-++.-+..+|++.+-|..||.+|..+|++..|...|.+|+++.|++++.+..+|.+++.+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 47778888999999999999999999999999999999999999999999999999999999987764 357899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691 208 KEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253 (673)
Q Consensus 208 ~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~ 253 (673)
+++++.+|++..+.+.||..+++.|+|.+|+..++..++..|.+..
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999999999999999999886543
No 118
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.02 E-value=1.3e-09 Score=87.30 Aligned_cols=67 Identities=30% Similarity=0.540 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q psy17691 183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ-DIQGALQCYSRAIQINP 249 (673)
Q Consensus 183 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~Al~l~p 249 (673)
++..|.++|.++...|++++|+.+|+++++++|+++.+++++|.++..+| ++++|+++|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34566666666666666666666666666666666666666666666666 56666666666666665
No 119
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.00 E-value=1.3e-09 Score=121.09 Aligned_cols=147 Identities=11% Similarity=-0.012 Sum_probs=109.0
Q ss_pred cccCCCC--CcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCc
Q psy17691 467 QQYGLPE--DAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPN 544 (673)
Q Consensus 467 ~~~~l~~--~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (673)
.++|++. ..+.|..--...|..+.++++++.+....|+.+|+++|
T Consensus 538 r~lgi~~~~kgiLfVGRLa~EKGld~LLeAla~L~~~~pnvrLvIVG--------------------------------- 584 (794)
T PLN02501 538 RELGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNELDGFNLDVFG--------------------------------- 584 (794)
T ss_pred HhcCCccccCceEEEEcccccCCHHHHHHHHHHHHhhCCCeEEEEEc---------------------------------
Confidence 4566653 23444432234599999999999999889999999998
Q ss_pred hhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEec-CCCCCCcchhhhhhhcCCceeecCCC
Q psy17691 545 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTPVVTLPGE 623 (673)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~GvPvvt~~g~ 623 (673)
+|+.++.+++.+.++|+ +|.|+|..+... ..|+.+|||+- |..++-|+|++|||+||+|||+-..+
T Consensus 585 --------DGP~reeLe~la~eLgL---~V~FLG~~dd~~--~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~p 651 (794)
T PLN02501 585 --------NGEDAHEVQRAAKRLDL---NLNFLKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVVCADHP 651 (794)
T ss_pred --------CCccHHHHHHHHHHcCC---EEEecCCCCCHH--HHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEecCC
Confidence 57777889998888888 389998765332 56778999955 56778899999999999999987654
Q ss_pred cchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHH
Q psy17691 624 TLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEK 666 (673)
Q Consensus 624 ~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~ 666 (673)
.. .++. -|-..++..+.+++++.+.++..|++.+..
T Consensus 652 G~------e~V~-~g~nGll~~D~EafAeAI~~LLsd~~~rl~ 687 (794)
T PLN02501 652 SN------EFFR-SFPNCLTYKTSEDFVAKVKEALANEPQPLT 687 (794)
T ss_pred CC------ceEe-ecCCeEecCCHHHHHHHHHHHHhCchhhhH
Confidence 21 1111 133445568999999999999988875543
No 120
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.00 E-value=3.2e-09 Score=118.58 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=114.5
Q ss_pred CCCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhh
Q psy17691 472 PEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWL 549 (673)
Q Consensus 472 ~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (673)
+.+.++++.++++. |-.+.+++++..+.+..|+.+++++|.. . +
T Consensus 290 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g-~-~-------------------------------- 335 (475)
T cd03813 290 EKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPT-D-E-------------------------------- 335 (475)
T ss_pred CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCC-C-c--------------------------------
Confidence 34566777778764 7788899999999999999999998810 0 0
Q ss_pred ccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEec-CCCCCCcchhhhhhhcCCceeecCCCcchhh
Q psy17691 550 LKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTPVVTLPGETLASR 628 (673)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r 628 (673)
...-.+.+++..++.|+. ++|.|+| .++....|..+|+++- |..++.|++++|||++|+|||+-.-....
T Consensus 336 ---~~~~~~e~~~li~~l~l~-~~V~f~G---~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~~~-- 406 (475)
T cd03813 336 ---DPEYAEECRELVESLGLE-DNVKFTG---FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVGSCR-- 406 (475)
T ss_pred ---ChHHHHHHHHHHHHhCCC-CeEEEcC---CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCCChH--
Confidence 112245678888899994 9999999 4456667779999954 56788899999999999999995433322
Q ss_pred hHHHHHHh-----cCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691 629 VAASQLAT-----LGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLY 670 (673)
Q Consensus 629 ~~~~~l~~-----~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~ 670 (673)
.++.. +|-..++. .|.+++.+...++.+|++.+++++..
T Consensus 407 ---elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~~~~~~~~ 452 (475)
T cd03813 407 ---ELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPELRRAMGEA 452 (475)
T ss_pred ---HHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 23333 23445443 58999999999999999999888654
No 121
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.00 E-value=1e-08 Score=114.24 Aligned_cols=140 Identities=16% Similarity=0.136 Sum_probs=116.7
Q ss_pred CCCChhHH---HHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHh
Q psy17691 113 SPDDGTTF---SYIISVLLL---IQVSEAEECYNTALRLCPTHADSLNNLANIKREQG--------YIEEATRLYLKALE 178 (673)
Q Consensus 113 ~p~~~~~~---~~~~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g--------~~~eA~~~~~~al~ 178 (673)
.|.+..+| ..+..++.. ++.++|+.+|++|++++|+++.++..++.++.... +..++.+..++++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 35555555 333334433 35889999999999999999999999988876542 34566777777666
Q ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691 179 V--FPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253 (673)
Q Consensus 179 ~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~ 253 (673)
+ +|..+.++.-+|..+...|++++|...++++++++| +..+|..+|.++...|++++|++.|++|++++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 4 777888999999999999999999999999999999 5889999999999999999999999999999999875
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=2.7e-08 Score=105.10 Aligned_cols=124 Identities=18% Similarity=0.146 Sum_probs=120.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691 146 CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225 (673)
Q Consensus 146 ~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 225 (673)
+|....+++..+..++..|++++|+..++..++..|+|+..+...+.++...++.++|.+.+++++.++|+.+..+.++|
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 226 ~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
++|.+.|++.+|+..+++.+.-+|+++..|..|++.|..+|+..
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 99999999999999999999999999999999999999999875
No 123
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.99 E-value=2.1e-08 Score=93.16 Aligned_cols=125 Identities=26% Similarity=0.252 Sum_probs=108.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHH
Q psy17691 120 FSYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASV 193 (673)
Q Consensus 120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~ 193 (673)
+..+...+..++..++...+++.++.+|+. ..+.+.+|.++...|++++|...|++++...|+. ..+.+.++.+
T Consensus 15 y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~ 94 (145)
T PF09976_consen 15 YEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARI 94 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 334444456889999999999999999998 5678889999999999999999999999988665 4678899999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAI 245 (673)
Q Consensus 194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 245 (673)
+..+|++++|+..++. +.-.+-.+.++..+|.+|..+|++++|+..|++|+
T Consensus 95 ~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 95 LLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999976 34444557788999999999999999999999985
No 124
>KOG1127|consensus
Probab=98.98 E-value=6.8e-09 Score=116.52 Aligned_cols=197 Identities=16% Similarity=0.089 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhhh
Q psy17691 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSS 82 (673)
Q Consensus 3 ~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~~ 82 (673)
..|...|-++++++|+.+.++..||.+|+...+...+.- +|.++-.
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~k--------------------Cf~KAFe-------------- 520 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKK--------------------CFDKAFE-------------- 520 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHhc--------------
Confidence 467888888889999988898888888876542111111 2222222
Q ss_pred hcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Q psy17691 83 DFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTH--ADSLNNLANI 159 (673)
Q Consensus 83 ~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~Lg~~ 159 (673)
+++.+..++..+ ..+.+..+++.|....-.+-+..|.. ...|..+|..
T Consensus 521 -----------------------------LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 521 -----------------------------LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred -----------------------------CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 333333443222 22333556666666655555544432 2344456666
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691 160 KREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ 239 (673)
Q Consensus 160 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~ 239 (673)
|.+.+++..|+..|+.+++.+|++.+.|..+|.+|...|+|..|++.|.++..++|.+....+..+.+...+|+|.+|+.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHH
Q psy17691 240 CYSRAIQINPGFADAHSNLASIH 262 (673)
Q Consensus 240 ~~~~Al~l~p~~~~a~~~La~~~ 262 (673)
.++..+............|+.++
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ 674 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESV 674 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHH
Confidence 66666655444444444444443
No 125
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.97 E-value=2.4e-09 Score=85.76 Aligned_cols=68 Identities=31% Similarity=0.452 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q psy17691 148 THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG-KLTDALLHYKEAIRIQP 215 (673)
Q Consensus 148 ~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p 215 (673)
+++.+|..+|.++...|++++|+.+|+++++++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 357889999999999999999999999999999999999999999999999 79999999999999987
No 126
>KOG1156|consensus
Probab=98.97 E-value=5.4e-09 Score=113.03 Aligned_cols=156 Identities=18% Similarity=0.196 Sum_probs=148.0
Q ss_pred CCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy17691 114 PDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193 (673)
Q Consensus 114 p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 193 (673)
|.....+..+...+..++|.+.+...++.++..|++.+.+...|..+..+|+-++|..+.+.+++.++.+..+|.-+|.+
T Consensus 5 ~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 5 PKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL 84 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 44445566677788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
+...++|++|+++|+.|+.++|+|..+|.-++.+..++++++.....-.+.+++.|.....|..++..+...|++.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888886
No 127
>PLN02949 transferase, transferring glycosyl groups
Probab=98.97 E-value=2.9e-09 Score=117.67 Aligned_cols=155 Identities=15% Similarity=0.053 Sum_probs=115.3
Q ss_pred EEEecCCcc--cccChhhHHHHHHHHhc----ccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhh
Q psy17691 476 IVYCNFNQL--YKIDPSTLQMWVNVLKA----VPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWL 549 (673)
Q Consensus 476 ~~~~~~~~~--~K~~~~~~~~~~~il~~----~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (673)
.+|.+++++ .|..+..+++|++++++ .|+.+|+++|.....
T Consensus 269 ~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~--------------------------------- 315 (463)
T PLN02949 269 PYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNK--------------------------------- 315 (463)
T ss_pred CEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCc---------------------------------
Confidence 456666754 59999999999998764 478899998821000
Q ss_pred ccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecC-CCCCCcchhhhhhhcCCceeecCCCcchhh
Q psy17691 550 LKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPVVTLPGETLASR 628 (673)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~GvPvvt~~g~~~~~r 628 (673)
.+....+.+++.+++.|+. ++|.|.|..+.++....|+.+|+++-| ..++-|++.+|||++|+|||+........
T Consensus 316 --~~~~~~~eL~~la~~l~L~-~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~- 391 (463)
T PLN02949 316 --EDEERLQKLKDRAKELGLD-GDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM- 391 (463)
T ss_pred --ccHHHHHHHHHHHHHcCCC-CcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc-
Confidence 0122246788899999994 899999999999999999999999876 47788999999999999999865221100
Q ss_pred hHHHHHHh--cCCCccccCCHHHHHHHHHHhcC-CHHHHHHHHhh
Q psy17691 629 VAASQLAT--LGCPELIARTHKEYQDIAIRLGT-DRDYCEKALLY 670 (673)
Q Consensus 629 ~~~~~l~~--~gl~~~ia~~~~~yv~~a~~la~-d~~~~~~~~~~ 670 (673)
.+... -|...+.+.|.+++.+...++.+ |++.+.+|+..
T Consensus 392 ---eIV~~~~~g~tG~l~~~~~~la~ai~~ll~~~~~~r~~m~~~ 433 (463)
T PLN02949 392 ---DIVLDEDGQQTGFLATTVEEYADAILEVLRMRETERLEIAAA 433 (463)
T ss_pred ---eeeecCCCCcccccCCCHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 11111 14456777899999999999998 57777777654
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.97 E-value=1.9e-08 Score=116.17 Aligned_cols=133 Identities=12% Similarity=0.110 Sum_probs=119.5
Q ss_pred cCCCChhHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------
Q psy17691 112 LSPDDGTTFSYIISVL-LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA------ 184 (673)
Q Consensus 112 l~p~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~------ 184 (673)
.+|.+..++..+...+ ..+++++|+..++.+++.+|+....++.+|.++.+.+++.+|... .++...+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 4677888886666655 799999999999999999999999999999999999988888766 6666655554
Q ss_pred -------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 185 -------------AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI 247 (673)
Q Consensus 185 -------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l 247 (673)
.+++.+|.+|.+.|+.++|.+.|+++++.+|+++.+++++|..|... +.++|++++.+|++.
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999 999999999999875
No 129
>KOG1130|consensus
Probab=98.96 E-value=2.4e-09 Score=109.72 Aligned_cols=268 Identities=18% Similarity=0.171 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCCC---------------------cHHHHHHHHHHHHHcCChh
Q psy17691 2 IDLAIDTYRRAIELQPNFP----DAYCNLANALKEKGQPN---------------------FPDAYCNLANALKEKGQIN 56 (673)
Q Consensus 2 ~~eAi~~~~kAL~l~P~~~----~a~~~Lg~~~~~~g~~~---------------------~a~a~~~la~~l~~~g~~~ 56 (673)
+...+..|+.|++.-.++. ..|..||++|..++++. .+.+.-++|..+...|.++
T Consensus 33 craGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fd 112 (639)
T KOG1130|consen 33 CRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFD 112 (639)
T ss_pred hhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccc
Confidence 4567889999999987764 35666777777777533 3344446788888888888
Q ss_pred hhcCChhhHH---hhcCC-----CchhhhhhhhhhcCCCcccccccccCCCC------chhHHHHHHH--hc--CCCC--
Q psy17691 57 VLHKPPYKYT---RELAP-----GNRIRIGYVSSDFGNHPTSHLMQSVPGMH------NKSRVEIFCY--AL--SPDD-- 116 (673)
Q Consensus 57 ~A~~~~~~~~---~~l~p-----~~~~~l~~~~~~l~~~~~a~~~~~~~~~~------~~~a~~~~~~--~l--~p~~-- 116 (673)
+|+..+++.+ .++.. -...+++.+|..-|+.-....-+...... .+.+++.+.. .+ ...+
T Consensus 113 eA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~ 192 (639)
T KOG1130|consen 113 EALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRL 192 (639)
T ss_pred hHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 8876544332 22221 11356666666655543222111111000 0011111100 00 0011
Q ss_pred --hhHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------
Q psy17691 117 --GTTFS-YIISVLLLIQVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEVFP------ 181 (673)
Q Consensus 117 --~~~~~-~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p------ 181 (673)
..++. ++..+|.+|+|++|+..-+.-+.+..+. -.++.++|+++.-+|+++.|+++|++.+.+.-
T Consensus 193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~ 272 (639)
T KOG1130|consen 193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT 272 (639)
T ss_pred hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh
Confidence 11221 1223445666666666666555554332 23566666666666666666666666544321
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC
Q psy17691 182 EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP------SFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN-----PG 250 (673)
Q Consensus 182 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~-----p~ 250 (673)
..+...+.||+.|.-..++++||.+.++-+.+.. ....+++.||+.+..+|..++|+.+.++.+++. +.
T Consensus 273 vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~s 352 (639)
T KOG1130|consen 273 VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTS 352 (639)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc
Confidence 1134455666666666666666666666555422 123455666666666666666666666666662 21
Q ss_pred -CHHHHHHHHHHHHHcCCCc
Q psy17691 251 -FADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 251 -~~~a~~~La~~~~~~g~~~ 269 (673)
...+..||...-..+|..+
T Consensus 353 gelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 353 GELTARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhhhhhHHHHHHhCCCc
Confidence 3345556666666666655
No 130
>KOG1127|consensus
Probab=98.95 E-value=9e-09 Score=115.58 Aligned_cols=161 Identities=20% Similarity=0.287 Sum_probs=127.8
Q ss_pred HHhcCCCChhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HH
Q psy17691 109 CYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF--AA 185 (673)
Q Consensus 109 ~~~l~p~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~ 185 (673)
++.+++..+.+|..++.+++ ..+...|..+|++|.++++.+.+++...+..|.+..++++|....-.+-+..|.. ..
T Consensus 484 alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~ 563 (1238)
T KOG1127|consen 484 ALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKE 563 (1238)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHh
Confidence 45567777777877777665 4477788888888888888888888888888888888888888766666666654 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691 186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS 265 (673)
Q Consensus 186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~ 265 (673)
.|..+|..|.+.++...|+..|+.+++.+|++..+|..+|.+|...|++.-|++.|.+|..++|.+..+.+..+.+....
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 56667888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCc
Q psy17691 266 GKRG 269 (673)
Q Consensus 266 g~~~ 269 (673)
|+|.
T Consensus 644 GkYk 647 (1238)
T KOG1127|consen 644 GKYK 647 (1238)
T ss_pred hhHH
Confidence 8876
No 131
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.94 E-value=7e-09 Score=113.93 Aligned_cols=152 Identities=18% Similarity=0.153 Sum_probs=112.8
Q ss_pred cEEEecCCcc--cccChhhHHHHHHHHhcccC-----eeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhh
Q psy17691 475 AIVYCNFNQL--YKIDPSTLQMWVNVLKAVPN-----SILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSIL 547 (673)
Q Consensus 475 ~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (673)
..+|++++++ .|.....+++|+.+.++.|+ .+|+++|....+
T Consensus 237 ~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~------------------------------- 285 (419)
T cd03806 237 ENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNE------------------------------- 285 (419)
T ss_pred CcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCc-------------------------------
Confidence 4566666754 59999999999999988775 899998821000
Q ss_pred hhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecC-CCcc
Q psy17691 548 WLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLP-GETL 625 (673)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~-g~~~ 625 (673)
.+....+.|++..+++|+. ++|.|+|.+|.++....|+.+|+++-|. .++=|.+.+|||++|+|||+.. |...
T Consensus 286 ----~~~~~~~~L~~~~~~l~l~-~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~ 360 (419)
T cd03806 286 ----DDEKRVEDLKLLAKELGLE-DKVEFVVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL 360 (419)
T ss_pred ----ccHHHHHHHHHHHHHhCCC-CeEEEecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCc
Confidence 0112346788888899994 8999999999999999999999998765 5667999999999999999865 2211
Q ss_pred hhhhHHHHHH--hcCCCccccCCHHHHHHHHHHhcCCHH-HHHHH
Q psy17691 626 ASRVAASQLA--TLGCPELIARTHKEYQDIAIRLGTDRD-YCEKA 667 (673)
Q Consensus 626 ~~r~~~~~l~--~~gl~~~ia~~~~~yv~~a~~la~d~~-~~~~~ 667 (673)
. .++. .-|-..+++.|.+++.+...++.+|++ .+..+
T Consensus 361 ~-----~iv~~~~~g~~G~l~~d~~~la~ai~~ll~~~~~~~~~~ 400 (419)
T cd03806 361 L-----DIVVPWDGGPTGFLASTAEEYAEAIEKILSLSEEERLRI 400 (419)
T ss_pred h-----heeeccCCCCceEEeCCHHHHHHHHHHHHhCCHHHHHHH
Confidence 1 1221 024456667899999999999998654 44333
No 132
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.94 E-value=6.3e-07 Score=107.69 Aligned_cols=252 Identities=17% Similarity=0.166 Sum_probs=182.0
Q ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCC----------------CcHHHHHHHHHHHHHcCChhhhcCChh
Q psy17691 1 LIDLAIDTYRRAIELQPN-FPDAYCNLANALKEKGQP----------------NFPDAYCNLANALKEKGQINVLHKPPY 63 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~-~~~a~~~Lg~~~~~~g~~----------------~~a~a~~~la~~l~~~g~~~~A~~~~~ 63 (673)
++++|...|+++.+.... +...|..+-..|.+.|+. .+...|..+...|.+.|+.++|.. .+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~-lf 530 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG-AY 530 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH-HH
Confidence 467899999998876532 567778888888888862 245667777888889999888875 33
Q ss_pred hHHh--hcCCCch--hhhhhhhhhcCCCcccccccccCCCCchhHHHHHHH------hcCCCChhHHHHHHHHHHcCCHH
Q psy17691 64 KYTR--ELAPGNR--IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY------ALSPDDGTTFSYIISVLLLIQVS 133 (673)
Q Consensus 64 ~~~~--~l~p~~~--~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~------~l~p~~~~~~~~~~~~~~~g~~~ 133 (673)
.... .+.|+.. ..+...+...+.. ..+.+.+.. .+.|+....-..+..+.+.|+++
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~--------------deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAV--------------DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCH--------------HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 3332 2334432 2222233333322 222222211 23455433335556677899999
Q ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691 134 EAEECYNTALRLC-PTHADSLNNLANIKREQGYIEEATRLYLKALEV--FPEFAAAHSNLASVLQQQGKLTDALLHYKEA 210 (673)
Q Consensus 134 ~A~~~~~~al~~~-p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 210 (673)
+|.+.|+++.+.+ +.+...|..+...|.+.|++++|.+.|++..+. .|+ ...|..+...|.+.|++++|.+.+++.
T Consensus 597 eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999998876 456788899999999999999999999988876 343 668888889999999999999999998
Q ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCc
Q psy17691 211 IRIQ-PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI--NPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 211 l~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l--~p~~~~a~~~La~~~~~~g~~~ 269 (673)
.+.. +.+...|..+...|.+.|++++|.+.|++..+. .| +...|..|...|.+.|+++
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~e 736 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLP 736 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHH
Confidence 8764 345778899999999999999999999987653 44 4677888889998888887
No 133
>KOG1128|consensus
Probab=98.94 E-value=1.1e-08 Score=112.03 Aligned_cols=133 Identities=19% Similarity=0.223 Sum_probs=90.2
Q ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691 137 ECYNTALRLCP-THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP 215 (673)
Q Consensus 137 ~~~~~al~~~p-~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 215 (673)
.+|+++.++.. .+..+...+|......++|+++.++++.+++++|-....|+++|.+..+.++++.|.++|.+++.++|
T Consensus 471 s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P 550 (777)
T KOG1128|consen 471 SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP 550 (777)
T ss_pred HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 33444444321 23445566666666667777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 216 SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 216 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
++.++|+|++..|.++|+..+|...+++|++.+-++...|-|...+..+.|.++
T Consensus 551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~e 604 (777)
T KOG1128|consen 551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFE 604 (777)
T ss_pred CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHH
Confidence 777777777777777777777777777777777666777777766666666665
No 134
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.93 E-value=3.1e-08 Score=87.99 Aligned_cols=103 Identities=19% Similarity=0.257 Sum_probs=93.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHH
Q psy17691 120 FSYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASV 193 (673)
Q Consensus 120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~ 193 (673)
+..+..+...|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|++++..+|++ ..++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 455566778999999999999999999876 6789999999999999999999999999999885 6789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691 194 LQQQGKLTDALLHYKEAIRIQPSFADAYS 222 (673)
Q Consensus 194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 222 (673)
+...|++++|+..++++++..|++..+..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 99999999999999999999999876543
No 135
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=98.93 E-value=1e-08 Score=114.43 Aligned_cols=145 Identities=12% Similarity=0.113 Sum_probs=107.1
Q ss_pred CCCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhh
Q psy17691 472 PEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWL 549 (673)
Q Consensus 472 ~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (673)
+.+.+++++++++. |. ++...++++..|+.+|+++|
T Consensus 260 ~~~~~~i~~vGrl~~~K~----~~~li~a~~~~~~~~l~ivG-------------------------------------- 297 (465)
T PLN02871 260 EPEKPLIVYVGRLGAEKN----LDFLKRVMERLPGARLAFVG-------------------------------------- 297 (465)
T ss_pred CCCCeEEEEeCCCchhhh----HHHHHHHHHhCCCcEEEEEe--------------------------------------
Confidence 34566777777764 54 44455566778999999988
Q ss_pred ccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcchhh
Q psy17691 550 LKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLASR 628 (673)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~~r 628 (673)
.++.++.+++.++. .+|+|+|.++.++....|..+||++-|. .++-|.+++|||++|+|||+-.......
T Consensus 298 ---~G~~~~~l~~~~~~-----~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg~~e- 368 (465)
T PLN02871 298 ---DGPYREELEKMFAG-----TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVAARAGGIPD- 368 (465)
T ss_pred ---CChHHHHHHHHhcc-----CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEEEcCCCCcHh-
Confidence 34455566665442 4799999999999999999999997654 6677999999999999999865432211
Q ss_pred hHHHHHHh--cCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 629 VAASQLAT--LGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 629 ~~~~~l~~--~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
++.. .|-..++. .|.+++.+...++.+|++.+.+++...
T Consensus 369 ----iv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a 411 (465)
T PLN02871 369 ----IIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAA 411 (465)
T ss_pred ----hhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 3332 25555554 489999999999999999998887643
No 136
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.92 E-value=2.2e-08 Score=95.48 Aligned_cols=100 Identities=28% Similarity=0.287 Sum_probs=82.7
Q ss_pred HHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17691 119 TFSYI-ISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVL 194 (673)
Q Consensus 119 ~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 194 (673)
.+..+ ..+...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+.+|+++++++|.+...+.++|.++
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34333 44456899999999999999997763 458999999999999999999999999999999999999999999
Q ss_pred H-------HcCCHH-------HHHHHHHHHHHhCCCCH
Q psy17691 195 Q-------QQGKLT-------DALLHYKEAIRIQPSFA 218 (673)
Q Consensus 195 ~-------~~g~~~-------eA~~~~~~al~~~p~~~ 218 (673)
. .+|+++ +|+.+|++++..+|++.
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 8 777776 55666667777787653
No 137
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.92 E-value=1.3e-08 Score=110.41 Aligned_cols=163 Identities=17% Similarity=0.115 Sum_probs=122.0
Q ss_pred ccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccC
Q psy17691 466 RQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVP 543 (673)
Q Consensus 466 r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (673)
|..++.+.+.++|+.++++. |..+.+++++.++.++.|+.+|+++|.....
T Consensus 211 ~~~~~~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~--------------------------- 263 (398)
T cd03800 211 RARLLRDPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDD--------------------------- 263 (398)
T ss_pred HHhhccCCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCc---------------------------
Confidence 44566777778888888765 7888999999999988899999998721000
Q ss_pred chhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecC-CCCCCcchhhhhhhcCCceeecCC
Q psy17691 544 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPVVTLPG 622 (673)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~GvPvvt~~g 622 (673)
........++...+..|+. ++|.|.|.++.++....|..+|+++-| ..++-|++.+|||++|+|||+-..
T Consensus 264 --------~~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~ 334 (398)
T cd03800 264 --------ILAMDEEELRELARELGVI-DRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAV 334 (398)
T ss_pred --------chhhhhHHHHHHHHhcCCC-ceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCC
Confidence 0011223466777888885 899999999999999999999999775 466779999999999999998665
Q ss_pred CcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691 623 ETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLY 670 (673)
Q Consensus 623 ~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~ 670 (673)
..... ++..-+ ..++. .|.+++++...++.+|++.+.++...
T Consensus 335 ~~~~e-----~i~~~~-~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~ 378 (398)
T cd03800 335 GGPRD-----IVVDGV-TGLLVDPRDPEALAAALRRLLTDPALRRRLSRA 378 (398)
T ss_pred CCHHH-----HccCCC-CeEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 43222 333322 23444 47999999999999999998887654
No 138
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.92 E-value=1.1e-08 Score=108.05 Aligned_cols=156 Identities=21% Similarity=0.203 Sum_probs=121.5
Q ss_pred ccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCch
Q psy17691 468 QYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNS 545 (673)
Q Consensus 468 ~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (673)
....+.+.++++.+++. .|..+.+++++..+....|+.+|++.|
T Consensus 192 ~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G---------------------------------- 237 (374)
T cd03801 192 RLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVG---------------------------------- 237 (374)
T ss_pred hcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEe----------------------------------
Confidence 34445556677777754 588899999999999999999999887
Q ss_pred hhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCC-CCCcchhhhhhhcCCceeecCCCc
Q psy17691 546 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGTPVVTLPGET 624 (673)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p-~~g~~t~~eal~~GvPvvt~~g~~ 624 (673)
.+.....+++.+...+. .++|.|.|.++.+++...|..+|+++.|.. .+.|++.+|||++|+|||+-....
T Consensus 238 -------~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~ 309 (374)
T cd03801 238 -------DGPLREELEALAAELGL-GDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGG 309 (374)
T ss_pred -------CcHHHHHHHHHHHHhCC-CcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCCC
Confidence 33445566777777888 489999999999999999999999998764 467999999999999999988654
Q ss_pred chhhhHHHHHHhcCCCccccC--CHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 625 LASRVAASQLATLGCPELIAR--THKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 625 ~~~r~~~~~l~~~gl~~~ia~--~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
+.. ++.. +-..++.. +.++.++...++.+|++.+.+++...
T Consensus 310 ~~~-----~~~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 352 (374)
T cd03801 310 IPE-----VVED-GETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAA 352 (374)
T ss_pred hhH-----HhcC-CcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 443 2222 33334443 36999999999999999998887653
No 139
>PLN02939 transferase, transferring glycosyl groups
Probab=98.92 E-value=1.2e-08 Score=117.66 Aligned_cols=189 Identities=12% Similarity=0.003 Sum_probs=123.7
Q ss_pred eeccCccccccccccccCc-ccCc--------ccccccccccCCCC---CcEEEecCCccc--ccChhhHHHHHHHHhcc
Q psy17691 437 VLQNGLATNQTNTKTATGE-EVPQ--------SIVITSRQQYGLPE---DAIVYCNFNQLY--KIDPSTLQMWVNVLKAV 502 (673)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~r~~~~l~~---~~~~~~~~~~~~--K~~~~~~~~~~~il~~~ 502 (673)
.|.||+.+..+++...+.. ..+. ......|+++||+. +.++||+++|+. |-.+.+++++.+++.
T Consensus 729 gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~-- 806 (977)
T PLN02939 729 GILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAE-- 806 (977)
T ss_pred EEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhh--
Confidence 5889998776654431100 0000 01234678899985 468899999875 889999999998885
Q ss_pred cCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChh---hhhhHHHHHHHcCCCCCeEEeccC
Q psy17691 503 PNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAV---GEANIQATAQALGLDQHRILFSNV 579 (673)
Q Consensus 503 p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~rv~~~~~ 579 (673)
++.+|+++| +|+ .++.+++....+|+ .+||.|.|.
T Consensus 807 ~dvqLVIvG-----------------------------------------dGp~~~~e~eL~~La~~l~l-~drV~FlG~ 844 (977)
T PLN02939 807 LGGQFVLLG-----------------------------------------SSPVPHIQREFEGIADQFQS-NNNIRLILK 844 (977)
T ss_pred cCCEEEEEe-----------------------------------------CCCcHHHHHHHHHHHHHcCC-CCeEEEEec
Confidence 578999888 221 24567777888888 489999998
Q ss_pred cChHHHHHhcccccEEecC-CCCCCcchhhhhhhcCCceeec-CCCcchhhh---HHHHHHhcCCCcccc--CCHHHHHH
Q psy17691 580 AAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPVVTL-PGETLASRV---AASQLATLGCPELIA--RTHKEYQD 652 (673)
Q Consensus 580 ~~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~GvPvvt~-~g~~~~~r~---~~~~l~~~gl~~~ia--~~~~~yv~ 652 (673)
.+...-...|..+|+||-| .-++-|.|.+|||++|+|+|+. .|. ...=+ .......-|-++++. .|++++.+
T Consensus 845 ~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGG-L~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~ 923 (977)
T PLN02939 845 YDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGG-LNDSVFDFDDETIPVELRNGFTFLTPDEQGLNS 923 (977)
T ss_pred cCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCC-CcceeecCCccccccCCCceEEecCCCHHHHHH
Confidence 7766556789999999764 5678899999999999776653 332 11100 000000012334432 47777766
Q ss_pred HHHHhc----CCHHHHHHHHhh
Q psy17691 653 IAIRLG----TDRDYCEKALLY 670 (673)
Q Consensus 653 ~a~~la----~d~~~~~~~~~~ 670 (673)
...++. .|++.+.+++..
T Consensus 924 AL~rAL~~~~~dpe~~~~L~~~ 945 (977)
T PLN02939 924 ALERAFNYYKRKPEVWKQLVQK 945 (977)
T ss_pred HHHHHHHHhccCHHHHHHHHHH
Confidence 554433 588888888654
No 140
>KOG1130|consensus
Probab=98.92 E-value=1.8e-08 Score=103.33 Aligned_cols=125 Identities=18% Similarity=0.119 Sum_probs=94.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHH
Q psy17691 122 YIISVLLLIQVSEAEECYNTALRLC----P--THADSLNNLANIKREQGYIEEATRLYLKALEVFP------EFAAAHSN 189 (673)
Q Consensus 122 ~~~~~~~~g~~~~A~~~~~~al~~~----p--~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p------~~~~~~~~ 189 (673)
.+.++..+|+++.|+++|++.+.+. . -.+...+.||+.|.-..++++|+.++++-+++.. ....++..
T Consensus 241 lgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwS 320 (639)
T KOG1130|consen 241 LGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWS 320 (639)
T ss_pred cchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3455667999999999999987763 2 2355788999999999999999999999887743 33678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691 190 LASVLQQQGKLTDALLHYKEAIRIQ----PS--FADAYSNMGNTLKEMQDIQGALQCYSRAIQ 246 (673)
Q Consensus 190 la~~~~~~g~~~eA~~~~~~al~~~----p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 246 (673)
||..+...|..++|+.+.++.+++. .. ...+..|+...-...|.-+.-..--+..+.
T Consensus 321 Lgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds~~~~te~~i~ 383 (639)
T KOG1130|consen 321 LGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDSLVDDTELIID 383 (639)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcccCCcHHHHhh
Confidence 9999999999999999988887763 22 234667777777777765544444443333
No 141
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.91 E-value=1.2e-08 Score=108.68 Aligned_cols=149 Identities=15% Similarity=0.072 Sum_probs=115.9
Q ss_pred cEEEecCCc--ccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691 475 AIVYCNFNQ--LYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF 552 (673)
Q Consensus 475 ~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (673)
.+.++++++ ..|..+.+++++.++.+..|+.++.++|
T Consensus 179 ~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G----------------------------------------- 217 (355)
T cd03799 179 PLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVG----------------------------------------- 217 (355)
T ss_pred CeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEE-----------------------------------------
Confidence 444455554 4688899999999988888999999887
Q ss_pred ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-C------CCCcchhhhhhhcCCceeecCCCcc
Q psy17691 553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-L------CNGHTTSMDVLWTGTPVVTLPGETL 625 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p------~~g~~t~~eal~~GvPvvt~~g~~~ 625 (673)
.+.....+.+.+++.|+ .++|.|.|.++.++....|..+|+++-|. . ++.|++.+|||++|+|||+......
T Consensus 218 ~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~ 296 (355)
T cd03799 218 DGPLRDELEALIAELGL-EDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGI 296 (355)
T ss_pred CCccHHHHHHHHHHcCC-CCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCc
Confidence 23345567788888888 48999999999999999999999998876 3 6779999999999999998665433
Q ss_pred hhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 626 ASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 626 ~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
.. ++.. +-..++. .|.+++++....+.+|++.+.++++..
T Consensus 297 ~~-----~i~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a 338 (355)
T cd03799 297 PE-----LVED-GETGLLVPPGDPEALADAIERLLDDPELRREMGEAG 338 (355)
T ss_pred ch-----hhhC-CCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 22 3332 3234443 389999999999999999888777653
No 142
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.91 E-value=7e-09 Score=111.98 Aligned_cols=146 Identities=16% Similarity=0.128 Sum_probs=112.1
Q ss_pred EEecCCc--ccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCCh
Q psy17691 477 VYCNFNQ--LYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPA 554 (673)
Q Consensus 477 ~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (673)
+++++++ ..|..+..++++.++..+.|+.+|.++| .+
T Consensus 206 ~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G-----------------------------------------~g 244 (372)
T cd04949 206 KIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYG-----------------------------------------YG 244 (372)
T ss_pred eEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEE-----------------------------------------eC
Confidence 4444454 4688999999999999999999999988 23
Q ss_pred hhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcchhhhHHHH
Q psy17691 555 VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQ 633 (673)
Q Consensus 555 ~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~ 633 (673)
.....+.......|+. ++|.|.|. .++....|+.+|++++|. .++.|++.+|||++|+|||+....... ..+
T Consensus 245 ~~~~~~~~~~~~~~~~-~~v~~~g~--~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~----~~~ 317 (372)
T cd04949 245 DEEEKLKELIEELGLE-DYVFLKGY--TRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYGP----SEI 317 (372)
T ss_pred chHHHHHHHHHHcCCc-ceEEEcCC--CCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCCc----HHH
Confidence 3445677777888984 89999994 456778888999998876 557799999999999999986532111 112
Q ss_pred HHhcCCCccccC--CHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 634 LATLGCPELIAR--THKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 634 l~~~gl~~~ia~--~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
+ .-|-..++.. |.++..+...++.+|++.+++++.+.
T Consensus 318 v-~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a 356 (372)
T cd04949 318 I-EDGENGYLVPKGDIEALAEAIIELLNDPKLLQKFSEAA 356 (372)
T ss_pred c-ccCCCceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 2 2245556665 89999999999999999998887764
No 143
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.91 E-value=2.1e-07 Score=109.23 Aligned_cols=265 Identities=11% Similarity=0.033 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC------------CCcHHHHHHHHHHHHHcCChhhhcCChhhHHhh-
Q psy17691 3 DLAIDTYRRAIELQ-PNFPDAYCNLANALKEKGQ------------PNFPDAYCNLANALKEKGQINVLHKPPYKYTRE- 68 (673)
Q Consensus 3 ~eAi~~~~kAL~l~-P~~~~a~~~Lg~~~~~~g~------------~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~- 68 (673)
+++.+.+..+++.. ..+...+..|...|.+.|+ ..+...|..+...|...|+.++|... ++....
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~l-f~~M~~~ 319 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL-YYEMRDS 319 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH-HHHHHHc
Confidence 44555555555442 2245566666677777765 23445566677777777777777652 333222
Q ss_pred -cCCCch--hhhhhhhhhcCCCcccccccccCCCCchhHHH-HHHHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691 69 -LAPGNR--IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE-IFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALR 144 (673)
Q Consensus 69 -l~p~~~--~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~-~~~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 144 (673)
+.|+.. ..+...+...+....+... .. .......++....-..+..|.+.|++++|...|++..+
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i-----------~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQA-----------HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHH-----------HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 334332 2333344444433222110 11 11222334433334555666778888888888887754
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHH
Q psy17691 145 LCPTHADSLNNLANIKREQGYIEEATRLYLKALEVF-PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP--SFADAY 221 (673)
Q Consensus 145 ~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~ 221 (673)
.+...|+.+...|.+.|+.++|++.|++..+.. .-+..++..+-..+...|+.++|.++|+...+... .+...|
T Consensus 389 ---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 389 ---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred ---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 356678888888888888888888888877643 22356677777888888888888888888876422 234577
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHH
Q psy17691 222 SNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------FFIRTDLNSAYFWLL 284 (673)
Q Consensus 222 ~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------l~l~p~~~~a~~~l~ 284 (673)
..+..+|.+.|++++|.+.++++ ...| +...|..|...+...|+++ +.+.|++...|..+.
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~ 535 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLL 535 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHH
Confidence 88888888888888888888764 2333 3566888888888888877 567787766665554
No 144
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.90 E-value=1.5e-07 Score=92.64 Aligned_cols=151 Identities=18% Similarity=0.166 Sum_probs=122.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHH
Q psy17691 118 TTFSYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLA 191 (673)
Q Consensus 118 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la 191 (673)
..+..+...+..|++++|+..|++++...|.. ..+.+.+|.+++..|++++|+..+++.++..|++ ..+++.+|
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 34566778889999999999999999998876 6789999999999999999999999999999987 56888888
Q ss_pred HHHHHcC-----------CHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHH
Q psy17691 192 SVLQQQG-----------KLTDALLHYKEAIRIQPSFAD-----------------AYSNMGNTLKEMQDIQGALQCYSR 243 (673)
Q Consensus 192 ~~~~~~g-----------~~~eA~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~eA~~~~~~ 243 (673)
.+++.+. ...+|+..|++.++..|++.. --..+|..|.+.|.+..|+..++.
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~ 166 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQY 166 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 8876543 356899999999999999732 234578899999999999999999
Q ss_pred HHHhCCCCH---HHHHHHHHHHHHcCCC
Q psy17691 244 AIQINPGFA---DAHSNLASIHKDSGKR 268 (673)
Q Consensus 244 Al~l~p~~~---~a~~~La~~~~~~g~~ 268 (673)
+++..|+.. +++..++..|..+|..
T Consensus 167 v~~~yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 167 VIENYPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp HHHHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhCCh
Confidence 999999875 5677888888888864
No 145
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.89 E-value=2.5e-07 Score=93.42 Aligned_cols=152 Identities=9% Similarity=-0.044 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHH
Q psy17691 118 TTFSYIISVLLLIQVSEAEECYNTALRLCPTHADS---LNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLA 191 (673)
Q Consensus 118 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la 191 (673)
..+..+...+..|++++|+..|++++...|....+ .+.+|.++++.+++++|+..+++.++.+|++ ..+++.+|
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 34566677788999999999999999999988655 4899999999999999999999999999987 56788899
Q ss_pred HHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHH
Q psy17691 192 SVLQQQG---------------K---LTDALLHYKEAIRIQPSFAD-----------------AYSNMGNTLKEMQDIQG 236 (673)
Q Consensus 192 ~~~~~~g---------------~---~~eA~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~e 236 (673)
.++...+ + ..+|+..|++.++..|++.. --..+|..|.+.|++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~A 193 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVA 193 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 8864443 1 35788999999999998732 23467788999999999
Q ss_pred HHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCCc
Q psy17691 237 ALQCYSRAIQINPGF---ADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 237 A~~~~~~Al~l~p~~---~~a~~~La~~~~~~g~~~ 269 (673)
|+.-++.+++..|+. .++...+...|..+|..+
T Consensus 194 A~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~ 229 (243)
T PRK10866 194 VVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNA 229 (243)
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChH
Confidence 999999999998865 578888899999988765
No 146
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.88 E-value=1.4e-08 Score=110.98 Aligned_cols=131 Identities=15% Similarity=0.067 Sum_probs=103.4
Q ss_pred EEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCCh
Q psy17691 477 VYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPA 554 (673)
Q Consensus 477 ~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (673)
++++++|+. |..+.+++++.++.+..|+.+|+++| +|
T Consensus 230 ~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivG-----------------------------------------dG 268 (462)
T PLN02846 230 GAYYIGKMVWSKGYKELLKLLHKHQKELSGLEVDLYG-----------------------------------------SG 268 (462)
T ss_pred EEEEEecCcccCCHHHHHHHHHHHHhhCCCeEEEEEC-----------------------------------------CC
Confidence 466677775 99999999999999889999999998 67
Q ss_pred hhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEec-CCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHH
Q psy17691 555 VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQ 633 (673)
Q Consensus 555 ~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~ 633 (673)
+.++.|++.+.+.|++ .++ |.|....+++++ .+|||+- |..++.|+|++|||+||+|||+-..+. ..+
T Consensus 269 p~~~~L~~~a~~l~l~-~~v-f~G~~~~~~~~~---~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~------~~~ 337 (462)
T PLN02846 269 EDSDEVKAAAEKLELD-VRV-YPGRDHADPLFH---DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS------NEF 337 (462)
T ss_pred ccHHHHHHHHHhcCCc-EEE-ECCCCCHHHHHH---hCCEEEECCCcccchHHHHHHHHcCCcEEEecCCC------cce
Confidence 8888999999999985 555 888876665444 5699955 568899999999999999999976432 133
Q ss_pred HHhcCCCccccCCHHHHHHHHHHhcCC
Q psy17691 634 LATLGCPELIARTHKEYQDIAIRLGTD 660 (673)
Q Consensus 634 l~~~gl~~~ia~~~~~yv~~a~~la~d 660 (673)
+.. |-..+...|.+++++...++..+
T Consensus 338 v~~-~~ng~~~~~~~~~a~ai~~~l~~ 363 (462)
T PLN02846 338 FKQ-FPNCRTYDDGKGFVRATLKALAE 363 (462)
T ss_pred eec-CCceEecCCHHHHHHHHHHHHcc
Confidence 333 54555668999999998887663
No 147
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.88 E-value=1.8e-08 Score=112.43 Aligned_cols=144 Identities=10% Similarity=-0.012 Sum_probs=107.2
Q ss_pred EEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCC
Q psy17691 476 IVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFP 553 (673)
Q Consensus 476 ~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (673)
.++++++|+ .|-.+..++++.++.+..|+.+|.++| .
T Consensus 320 ~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G-----------------------------------------~ 358 (500)
T TIGR02918 320 FSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYG-----------------------------------------E 358 (500)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEE-----------------------------------------C
Confidence 344555554 588999999999999999999999988 4
Q ss_pred hhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEec-CCCCCCcchhhhhhhcCCceeecCCC-cchhhhHH
Q psy17691 554 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTPVVTLPGE-TLASRVAA 631 (673)
Q Consensus 554 ~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~GvPvvt~~g~-~~~~r~~~ 631 (673)
++..+.+++.+++.|+. ++|.|.|..+..+ .|+.+|+++- |..++-|+|++|||++|+|||+-.-. ...
T Consensus 359 G~~~~~l~~~i~~~~l~-~~V~f~G~~~~~~---~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G~~----- 429 (500)
T TIGR02918 359 GGEKQKLQKIINENQAQ-DYIHLKGHRNLSE---VYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYGNP----- 429 (500)
T ss_pred chhHHHHHHHHHHcCCC-CeEEEcCCCCHHH---HHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecCCCCCH-----
Confidence 55567888999999994 8999999875444 5668999966 55788899999999999999996521 111
Q ss_pred HHHHhcCCCccccC------C----HHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 632 SQLATLGCPELIAR------T----HKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 632 ~~l~~~gl~~~ia~------~----~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
.++ .-|-.+++.. + .+++.+..++|.+ ++.+.+++...
T Consensus 430 eiI-~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~-~~~~~~~~~~a 477 (500)
T TIGR02918 430 TFI-EDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN-SNDIDAFHEYS 477 (500)
T ss_pred HHc-cCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC-hHHHHHHHHHH
Confidence 122 2266666654 2 7788888888885 55677776543
No 148
>KOG0543|consensus
Probab=98.87 E-value=3.4e-08 Score=102.49 Aligned_cols=115 Identities=17% Similarity=0.273 Sum_probs=91.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691 153 LNNLANIKREQGYIEEATRLYLKALEVFPEF---------------AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF 217 (673)
Q Consensus 153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 217 (673)
....|+.|++.|+|..|...|++++..-... ..++.|++.++.++++|.+|+..+.++|+++|+|
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 3455777777777777777777776652211 3578889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267 (673)
Q Consensus 218 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~ 267 (673)
..+++..|.++..+|+++.|+..|+++++++|+|..+...|..+-.+..+
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888888777655433
No 149
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.87 E-value=1.6e-08 Score=106.28 Aligned_cols=148 Identities=16% Similarity=0.186 Sum_probs=111.0
Q ss_pred cEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691 475 AIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF 552 (673)
Q Consensus 475 ~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (673)
..+|++++++ .|..+.++++|.++.+..|+.+|+++|
T Consensus 178 ~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G----------------------------------------- 216 (348)
T cd03820 178 SKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVG----------------------------------------- 216 (348)
T ss_pred CcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEe-----------------------------------------
Confidence 4445555543 688899999999999889999999987
Q ss_pred ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcchhhhHH
Q psy17691 553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLASRVAA 631 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~ 631 (673)
.+.....+.+.....|+. ++|.|.|. .++....|..+|+++-|. ..+.|++++|||++|+|||+-.......
T Consensus 217 ~~~~~~~~~~~~~~~~~~-~~v~~~g~--~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~---- 289 (348)
T cd03820 217 DGPEREALEALIKELGLE-DRVILLGF--TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS---- 289 (348)
T ss_pred CCCCHHHHHHHHHHcCCC-CeEEEcCC--cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchH----
Confidence 233345566777888884 89999998 578888999999997765 4567999999999999999865322211
Q ss_pred HHHHhcCCCccccC--CHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 632 SQLATLGCPELIAR--THKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 632 ~~l~~~gl~~~ia~--~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
.+..-|-..++.+ |.+++++...++.+|++.+++++...
T Consensus 290 -~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~ 330 (348)
T cd03820 290 -EIIEDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANA 330 (348)
T ss_pred -hhhccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 1222232334443 56999999999999999999888653
No 150
>PRK11906 transcriptional regulator; Provisional
Probab=98.87 E-value=8.6e-08 Score=101.92 Aligned_cols=116 Identities=13% Similarity=0.111 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEA 210 (673)
Q Consensus 131 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 210 (673)
...+|.++.++|++++|.++.++..+|.++...++++.|...|++|+.++|+.+.+|+..|.++...|+.++|++..+++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q psy17691 211 IRIQPSFADAYSNMGNT-LKEMQDIQGALQCYSRAIQ 246 (673)
Q Consensus 211 l~~~p~~~~~~~~lg~~-~~~~g~~~eA~~~~~~Al~ 246 (673)
++++|.-..+-...-.+ .+-....++|+..|-+-.+
T Consensus 399 lrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 399 LQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred hccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 99999876554433333 4445678888888876444
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.87 E-value=3e-08 Score=82.53 Aligned_cols=96 Identities=36% Similarity=0.385 Sum_probs=89.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691 121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL 200 (673)
Q Consensus 121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 200 (673)
..+..+...|++++|+..++++++..|++..++..+|.++...+++++|+++++++++..|.+..++..+|.++...|++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 34556677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCC
Q psy17691 201 TDALLHYKEAIRIQPS 216 (673)
Q Consensus 201 ~eA~~~~~~al~~~p~ 216 (673)
++|...++++++.+|+
T Consensus 85 ~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 85 EEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHccCCC
Confidence 9999999999988773
No 152
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.86 E-value=1.3e-06 Score=105.14 Aligned_cols=248 Identities=12% Similarity=0.075 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC----------------CcHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQP----------------NFPDAYCNLANALKEKGQINVLHKPPYKY 65 (673)
Q Consensus 2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~----------------~~a~a~~~la~~l~~~g~~~~A~~~~~~~ 65 (673)
+++|...|+.... | +...|..+-..+...|+. .+...+..+...+.+.|+.++|.. .++.
T Consensus 422 ~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~-vf~e 497 (1060)
T PLN03218 422 VKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE-VFHE 497 (1060)
T ss_pred HHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHH-HHHH
Confidence 5678887776543 4 466777777777777763 345566777788899999998875 3333
Q ss_pred Hhh--cCCCch--hhhhhhhhhcCCCcccccccccCCCCchhHHHHH----HHhcCCCChhHHHHHHHHHHcCCHHHHHH
Q psy17691 66 TRE--LAPGNR--IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF----CYALSPDDGTTFSYIISVLLLIQVSEAEE 137 (673)
Q Consensus 66 ~~~--l~p~~~--~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~----~~~l~p~~~~~~~~~~~~~~~g~~~~A~~ 137 (673)
... +.|+.. ..+...+...++. .+++..+ .....|+....-..+..+.+.|++++|.+
T Consensus 498 M~~~Gv~PdvvTynaLI~gy~k~G~~--------------eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~ 563 (1060)
T PLN03218 498 MVNAGVEANVHTFGALIDGCARAGQV--------------AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCcCH--------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 332 233332 2233334444432 2233333 22345664444456677778999999999
Q ss_pred HHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691 138 CYNTALRL----CPTHADSLNNLANIKREQGYIEEATRLYLKALEVF-PEFAAAHSNLASVLQQQGKLTDALLHYKEAIR 212 (673)
Q Consensus 138 ~~~~al~~----~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 212 (673)
.|++..+. .| +...+..+...|.+.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|++.|++..+
T Consensus 564 lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 564 VLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999763 34 46788899999999999999999999999886 45678999999999999999999999999887
Q ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCc
Q psy17691 213 I--QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN-PGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 213 ~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~-p~~~~a~~~La~~~~~~g~~~ 269 (673)
. .|+ ...|..+...|.+.|++++|.+.++++.+.. +-+...+..|...|.+.|+++
T Consensus 643 ~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 643 KGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred cCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 6 454 6789999999999999999999999998864 345788999999999999987
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.86 E-value=6.3e-09 Score=86.96 Aligned_cols=81 Identities=30% Similarity=0.384 Sum_probs=44.3
Q ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17691 163 QGYIEEATRLYLKALEVFPE--FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240 (673)
Q Consensus 163 ~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~ 240 (673)
+|++++|+..++++++.+|. +...++.+|.++++.|++++|+..+++ .+.++.+...+..+|.++.++|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45555555555555555553 234455555555556666666555555 555555555555556666666666666655
Q ss_pred HHHH
Q psy17691 241 YSRA 244 (673)
Q Consensus 241 ~~~A 244 (673)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 5543
No 154
>PRK15331 chaperone protein SicA; Provisional
Probab=98.85 E-value=3.7e-08 Score=90.85 Aligned_cols=113 Identities=17% Similarity=0.037 Sum_probs=98.8
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy17691 141 TALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA 220 (673)
Q Consensus 141 ~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 220 (673)
.+..+.++..+..+..|.-++.+|++++|...|+-....+|.++..|..||.++..+++|++|+..|..+..++++++..
T Consensus 28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p 107 (165)
T PRK15331 28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP 107 (165)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence 33444556677888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy17691 221 YSNMGNTLKEMQDIQGALQCYSRAIQINPGFADA 254 (673)
Q Consensus 221 ~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a 254 (673)
.+..|.||..+|+.++|+.+|+.+++ .|.+...
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE-RTEDESL 140 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHH
Confidence 99999999999999999999999988 4554444
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.85 E-value=6.5e-08 Score=92.64 Aligned_cols=115 Identities=28% Similarity=0.313 Sum_probs=93.7
Q ss_pred ChhHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy17691 116 DGTTFSYII-SVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191 (673)
Q Consensus 116 ~~~~~~~~~-~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 191 (673)
....+...+ .+...|++++|+.+|+++++..|+. ..++.++|.++...|++++|+.+++++++.+|++...+.++|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 334444444 4556899999999999999987764 568999999999999999999999999999999999999999
Q ss_pred HHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691 192 SVLQQQGK--------------LTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD 233 (673)
Q Consensus 192 ~~~~~~g~--------------~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 233 (673)
.++...|+ +++|+++++++++.+|++ +...+..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 99999887 677888888888888876 4445555544443
No 156
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.85 E-value=2.3e-08 Score=105.99 Aligned_cols=154 Identities=19% Similarity=0.181 Sum_probs=115.8
Q ss_pred cccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhcc
Q psy17691 465 SRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAV 542 (673)
Q Consensus 465 ~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (673)
.|+.+|++.+.++|+.+++. .|..+.+++++.++.+..|+.+|+++|.
T Consensus 183 ~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~------------------------------ 232 (365)
T cd03807 183 LREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGD------------------------------ 232 (365)
T ss_pred HHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecC------------------------------
Confidence 45678898888888888876 4888899999999998899999999871
Q ss_pred CchhhhhccCChhhhhhHHHHHH-HcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeec
Q psy17691 543 PNSILWLLKFPAVGEANIQATAQ-ALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTL 620 (673)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~ 620 (673)
+.....++.... ..|+ .++|.|.|.. ++....|..+|+++-|. ..+.|++.+|||++|+|||+-
T Consensus 233 -----------~~~~~~~~~~~~~~~~~-~~~v~~~g~~--~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~ 298 (365)
T cd03807 233 -----------GPDRANLELLALKELGL-EDKVILLGER--SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVAT 298 (365)
T ss_pred -----------CcchhHHHHHHHHhcCC-CceEEEcccc--ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEc
Confidence 222233444444 7787 4899999853 56778899999998765 457799999999999999996
Q ss_pred CCCcchhhhHHHHHHhcCCCccc--cCCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691 621 PGETLASRVAASQLATLGCPELI--ARTHKEYQDIAIRLGTDRDYCEKALLY 670 (673)
Q Consensus 621 ~g~~~~~r~~~~~l~~~gl~~~i--a~~~~~yv~~a~~la~d~~~~~~~~~~ 670 (673)
....... ++.. ..++ ..|.+++++....+.+|++.+.+++..
T Consensus 299 ~~~~~~e-----~~~~---~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~ 342 (365)
T cd03807 299 DVGDNAE-----LVGD---TGFLVPPGDPEALAEAIEALLADPALRQALGEA 342 (365)
T ss_pred CCCChHH-----Hhhc---CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHH
Confidence 5543322 3333 2233 358999999999999999888776654
No 157
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.85 E-value=2.6e-08 Score=106.30 Aligned_cols=161 Identities=16% Similarity=0.115 Sum_probs=118.4
Q ss_pred cccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhcc
Q psy17691 465 SRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAV 542 (673)
Q Consensus 465 ~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (673)
.|++++++++.++++.++++ .|..+.+++++..+.+..|+.+++++|.. .
T Consensus 175 ~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~---~------------------------- 226 (355)
T cd03819 175 LAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDA---Q------------------------- 226 (355)
T ss_pred HHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECC---c-------------------------
Confidence 45667788888888888876 58899999999999888889999998811 0
Q ss_pred CchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC--CCCCcchhhhhhhcCCceeec
Q psy17691 543 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP--LCNGHTTSMDVLWTGTPVVTL 620 (673)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~--p~~g~~t~~eal~~GvPvvt~ 620 (673)
-.....+.+.+.+.+.|+. ++|.|.|. .++....|..+|+++-|. +++.|+|.+|||++|+|||+-
T Consensus 227 ---------~~~~~~~~~~~~~~~~~~~-~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~ 294 (355)
T cd03819 227 ---------GRRFYYAELLELIKRLGLQ-DRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIAS 294 (355)
T ss_pred ---------ccchHHHHHHHHHHHcCCc-ceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEc
Confidence 0011234455677888884 89999998 567888889999998765 667899999999999999987
Q ss_pred CCCcchhhhHHHHHHhcCCCccc--cCCHHHHHHHHH-HhcCCHHHHHHHHhhh
Q psy17691 621 PGETLASRVAASQLATLGCPELI--ARTHKEYQDIAI-RLGTDRDYCEKALLYH 671 (673)
Q Consensus 621 ~g~~~~~r~~~~~l~~~gl~~~i--a~~~~~yv~~a~-~la~d~~~~~~~~~~~ 671 (673)
....... ++.. |...++ ..|.+++++... .+..|++.+.++++..
T Consensus 295 ~~~~~~e-----~i~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a 342 (355)
T cd03819 295 DHGGARE-----TVRP-GETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKA 342 (355)
T ss_pred CCCCcHH-----HHhC-CCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 6543322 3333 223333 257888888774 4556899999888764
No 158
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=9.1e-08 Score=96.23 Aligned_cols=110 Identities=25% Similarity=0.250 Sum_probs=95.0
Q ss_pred HHhcCCCChhHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCH
Q psy17691 109 CYALSPDDGTTFSYII-SVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG---YIEEATRLYLKALEVFPEFA 184 (673)
Q Consensus 109 ~~~l~p~~~~~~~~~~-~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g---~~~eA~~~~~~al~~~p~~~ 184 (673)
.+..+|++.+-|..++ .++.+|+++.|...|.+|+++.|++++.+..+|.++..+. ...++...++++++.+|.+.
T Consensus 148 ~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~i 227 (287)
T COG4235 148 HLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANI 227 (287)
T ss_pred HHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccH
Confidence 3455677777664443 4445779999999999999999999999999999987653 57789999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691 185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA 218 (673)
Q Consensus 185 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 218 (673)
.+.+.||..++++|+|.+|+..++..++..|.+.
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999988764
No 159
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.84 E-value=2.8e-08 Score=106.27 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=114.5
Q ss_pred ccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCch
Q psy17691 468 QYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNS 545 (673)
Q Consensus 468 ~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (673)
..+.+.+.++++++++. .|..+.+++++.++.+. |+.+|+++|
T Consensus 213 ~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G---------------------------------- 257 (394)
T cd03794 213 KELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVG---------------------------------- 257 (394)
T ss_pred hccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeC----------------------------------
Confidence 34455667777777765 58888999999998887 899999987
Q ss_pred hhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCC------CcchhhhhhhcCCceee
Q psy17691 546 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCN------GHTTSMDVLWTGTPVVT 619 (673)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~------g~~t~~eal~~GvPvvt 619 (673)
.+.....+.+.....++ ++|.|.|..+.++....|..+|+++-|.... .+++++|||++|+|||+
T Consensus 258 -------~~~~~~~~~~~~~~~~~--~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~ 328 (394)
T cd03794 258 -------DGPEKEELKELAKALGL--DNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLA 328 (394)
T ss_pred -------CcccHHHHHHHHHHcCC--CcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEE
Confidence 23334456565556665 6799999999999999999999998765433 25668999999999999
Q ss_pred cCCCcchhhhHHHHHHhcCCCcccc-CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 620 LPGETLASRVAASQLATLGCPELIA-RTHKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 620 ~~g~~~~~r~~~~~l~~~gl~~~ia-~~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
-....... ++..-+..-++. .|.++.++...++..|++.+.+++...
T Consensus 329 ~~~~~~~~-----~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 376 (394)
T cd03794 329 SVDGESAE-----LVEEAGAGLVVPPGDPEALAAAILELLDDPEERAEMGENG 376 (394)
T ss_pred ecCCCchh-----hhccCCcceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 76654433 222212222332 389999999999999999999887654
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.84 E-value=1e-08 Score=81.07 Aligned_cols=62 Identities=29% Similarity=0.518 Sum_probs=31.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691 190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251 (673)
Q Consensus 190 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~ 251 (673)
+|..++..|++++|++.|+++++.+|+++.++..+|.++..+|++++|+.+|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44445555555555555555555555555555555555555555555555555555555543
No 161
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=98.84 E-value=3.5e-08 Score=108.03 Aligned_cols=150 Identities=13% Similarity=0.085 Sum_probs=111.8
Q ss_pred CcEEEecCCcc--cccChhhHHHHHHHHhcccCeeE--EeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhh
Q psy17691 474 DAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSIL--WLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWL 549 (673)
Q Consensus 474 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (673)
+.++|++++++ .|-.+.+++++.++.+..|+..+ +++|
T Consensus 229 ~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG-------------------------------------- 270 (407)
T cd04946 229 DTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIG-------------------------------------- 270 (407)
T ss_pred CCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEe--------------------------------------
Confidence 45666777755 48889999999999998886544 4455
Q ss_pred ccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhccc--ccEEec-CCCCCCcchhhhhhhcCCceeecCCCcch
Q psy17691 550 LKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL--ADVCLD-TPLCNGHTTSMDVLWTGTPVVTLPGETLA 626 (673)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~--~Di~Ld-~~p~~g~~t~~eal~~GvPvvt~~g~~~~ 626 (673)
.+...+.+++.++..+. .++|.|+|.++.++....|.. +|+++- |..++-|++++|||++|+|||+-.-....
T Consensus 271 ---~g~~~~~l~~~~~~~~~-~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~~ 346 (407)
T cd04946 271 ---GGPLEDTLKELAESKPE-NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGTP 346 (407)
T ss_pred ---CchHHHHHHHHHHhcCC-CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCcH
Confidence 34455678887777777 489999999999999888865 788865 45678899999999999999985432222
Q ss_pred hhhHHHHHHhcCCCc-ccc--CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 627 SRVAASQLATLGCPE-LIA--RTHKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 627 ~r~~~~~l~~~gl~~-~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
.++.. |-.+ ++. .|.+++++...++.+|++.+.+|+...
T Consensus 347 -----e~i~~-~~~G~l~~~~~~~~~la~~I~~ll~~~~~~~~m~~~a 388 (407)
T cd04946 347 -----EIVDN-GGNGLLLSKDPTPNELVSSLSKFIDNEEEYQTMREKA 388 (407)
T ss_pred -----HHhcC-CCcEEEeCCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 12332 3233 333 378999999999999999999887654
No 162
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.83 E-value=2e-08 Score=109.68 Aligned_cols=142 Identities=13% Similarity=0.099 Sum_probs=98.8
Q ss_pred CcEEEecCCcc--cccChhhH----HHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhh
Q psy17691 474 DAIVYCNFNQL--YKIDPSTL----QMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSIL 547 (673)
Q Consensus 474 ~~~~~~~~~~~--~K~~~~~~----~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (673)
+..+++.++++ .|..+..+ ++|..+.+..|+.+|+++|
T Consensus 223 ~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG------------------------------------ 266 (397)
T TIGR03087 223 GKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVG------------------------------------ 266 (397)
T ss_pred CCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEEC------------------------------------
Confidence 34455555654 46555554 6788888889999999988
Q ss_pred hhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCC--CCCcchhhhhhhcCCceeecCCCcc
Q psy17691 548 WLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL--CNGHTTSMDVLWTGTPVVTLPGETL 625 (673)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p--~~g~~t~~eal~~GvPvvt~~g~~~ 625 (673)
.++. .. +++.+. .++|.|+|.++ +....|..+||++-|.. ++-+++++|||+||+|||+-...
T Consensus 267 -----~g~~-~~----~~~l~~-~~~V~~~G~v~--~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~-- 331 (397)
T TIGR03087 267 -----AKPS-PA----VRALAA-LPGVTVTGSVA--DVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEA-- 331 (397)
T ss_pred -----CCCh-HH----HHHhcc-CCCeEEeeecC--CHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCcc--
Confidence 2222 12 233444 36799999887 56678889999987753 34477899999999999996531
Q ss_pred hhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691 626 ASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLY 670 (673)
Q Consensus 626 ~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~ 670 (673)
+..+...-|..-+++.|.+++++...+|.+|++.+++++..
T Consensus 332 ----~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~~~~~~~~~ 372 (397)
T TIGR03087 332 ----AEGIDALPGAELLVAADPADFAAAILALLANPAEREELGQA 372 (397)
T ss_pred ----cccccccCCcceEeCCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 01111112333356789999999999999999988887654
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.83 E-value=1.4e-08 Score=80.26 Aligned_cols=65 Identities=31% Similarity=0.400 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691 154 NNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA 218 (673)
Q Consensus 154 ~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 218 (673)
+.+|..+.+.|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35778888888888888888888888888888888888888888888888888888888888764
No 164
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.83 E-value=2.5e-08 Score=106.36 Aligned_cols=154 Identities=21% Similarity=0.172 Sum_probs=112.9
Q ss_pred CCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhh
Q psy17691 470 GLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSIL 547 (673)
Q Consensus 470 ~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (673)
+.+.+.+++++++++ .|..+.+++++.++.++.|+.+|+++|..
T Consensus 180 ~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~---------------------------------- 225 (366)
T cd03822 180 GGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGET---------------------------------- 225 (366)
T ss_pred cCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccC----------------------------------
Confidence 344556666666655 48888999999999999999999998810
Q ss_pred hhccCChhhhhhHH----HHHHHcCCCCCeEEeccC-cChHHHHHhcccccEEecCC-CC--CCcchhhhhhhcCCceee
Q psy17691 548 WLLKFPAVGEANIQ----ATAQALGLDQHRILFSNV-AAKEEHVRRGQLADVCLDTP-LC--NGHTTSMDVLWTGTPVVT 619 (673)
Q Consensus 548 ~~~~~~~~~~~~~~----~~~~~~g~~~~rv~~~~~-~~~~~~~~~~~~~Di~Ld~~-p~--~g~~t~~eal~~GvPvvt 619 (673)
........ +.+.+.|+. ++|+|.|. ++.++....|+.+|+++-|. .. +.|.+.+|||++|+|||+
T Consensus 226 ------~~~~~~~~~~~~~~i~~~~~~-~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~ 298 (366)
T cd03822 226 ------HPDLERYRGEAYALAERLGLA-DRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVIS 298 (366)
T ss_pred ------ccchhhhhhhhHhHHHhcCCC-CcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEe
Confidence 00000111 346788984 89999987 99999999999999998776 44 568999999999999998
Q ss_pred cCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 620 LPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 620 ~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
-+... .. .+.. +-..++. .|.+++++....+.+|++.+.+++...
T Consensus 299 ~~~~~-~~-----~i~~-~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~ 345 (366)
T cd03822 299 TPVGH-AE-----EVLD-GGTGLLVPPGDPAALAEAIRRLLADPELAQALRARA 345 (366)
T ss_pred cCCCC-hh-----eeee-CCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 65432 11 1211 2233443 468999999999999999988887653
No 165
>KOG1128|consensus
Probab=98.83 E-value=3.5e-08 Score=108.19 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=70.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17691 129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK 208 (673)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 208 (673)
.++|+++..+++..++++|-....|+.+|.+..+.++++.|.++|.+.+.++|++.++|+|++..|...|+-.+|...++
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 35556666666666666665556666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 209 EAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI 247 (673)
Q Consensus 209 ~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l 247 (673)
++++.+-.+...|-|.-.+..+.|.+++|++.|.+.+.+
T Consensus 578 EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 578 EALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 666655555555555555555666666666655555544
No 166
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.82 E-value=3.7e-08 Score=108.54 Aligned_cols=160 Identities=18% Similarity=0.155 Sum_probs=109.1
Q ss_pred cccccCCCCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCc
Q psy17691 465 SRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPN 544 (673)
Q Consensus 465 ~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (673)
.|+.++ +.. .++.+.++..|-...++++|.++.+..|+.+|++++
T Consensus 225 ~r~~~~-~~~-~vil~~~~~~~~~~~ll~A~~~l~~~~~~~~liivG--------------------------------- 269 (425)
T PRK05749 225 LRRQLA-PNR-PVWIAASTHEGEEELVLDAHRALLKQFPNLLLILVP--------------------------------- 269 (425)
T ss_pred HHHHhc-CCC-cEEEEeCCCchHHHHHHHHHHHHHHhCCCcEEEEcC---------------------------------
Confidence 455566 333 333334455666667799999999889999999987
Q ss_pred hhhhhccCChhhh-hhHHHHHHHcCCCCCeEEeccCc------------ChHHHHHhcccccEE-e-cCCCCCCcchhhh
Q psy17691 545 SILWLLKFPAVGE-ANIQATAQALGLDQHRILFSNVA------------AKEEHVRRGQLADVC-L-DTPLCNGHTTSMD 609 (673)
Q Consensus 545 ~~~~~~~~~~~~~-~~~~~~~~~~g~~~~rv~~~~~~------------~~~~~~~~~~~~Di~-L-d~~p~~g~~t~~e 609 (673)
.++.+ +.+++.+++.|+. .+.|.+.. +..+....|+.+||+ + -|+..+||++.+|
T Consensus 270 --------~g~~r~~~l~~~~~~~gl~--~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lE 339 (425)
T PRK05749 270 --------RHPERFKEVEELLKKAGLS--YVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLE 339 (425)
T ss_pred --------CChhhHHHHHHHHHhCCCc--EEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHH
Confidence 34443 5788888999984 23333311 236888999999994 5 4666689999999
Q ss_pred hhhcCCceeecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 610 VLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 610 al~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
||++|+|||+-+...-.+-+ ...+...|.- +...|.+++.+....|.+|++.++++....
T Consensus 340 Ama~G~PVI~g~~~~~~~e~-~~~~~~~g~~-~~~~d~~~La~~l~~ll~~~~~~~~m~~~a 399 (425)
T PRK05749 340 PAAFGVPVISGPHTFNFKEI-FERLLQAGAA-IQVEDAEDLAKAVTYLLTDPDARQAYGEAG 399 (425)
T ss_pred HHHhCCCEEECCCccCHHHH-HHHHHHCCCe-EEECCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999984321111111 1222233321 224789999999999999999999887643
No 167
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.82 E-value=4.7e-08 Score=106.10 Aligned_cols=161 Identities=15% Similarity=0.115 Sum_probs=115.3
Q ss_pred ccccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691 464 TSRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA 541 (673)
Q Consensus 464 ~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (673)
..|.++|++.+.++|++++++. |-.+.+++++.++. ++.++++++.. .
T Consensus 190 ~~~~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~---~~~~l~i~g~g---~------------------------ 239 (388)
T TIGR02149 190 VVLDRYGIDRSRPYILFVGRITRQKGVPHLLDAVHYIP---KDVQVVLCAGA---P------------------------ 239 (388)
T ss_pred HHHHHhCCCCCceEEEEEcccccccCHHHHHHHHHHHh---hcCcEEEEeCC---C------------------------
Confidence 4567789998888888888765 78888999988764 46677776510 0
Q ss_pred cCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEec-cCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceee
Q psy17691 542 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFS-NVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVT 619 (673)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~-~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt 619 (673)
......+.+++.+...+...++++|. +..+.++....|..+|+++-|. ..+.|++.+|||++|+|||+
T Consensus 240 ----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~ 309 (388)
T TIGR02149 240 ----------DTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVA 309 (388)
T ss_pred ----------CcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEE
Confidence 01112456677777777755667765 6789999999999999998765 56779999999999999998
Q ss_pred cCCCcchhhhHHHHHHhcCCCcccc--CCH------HHHHHHHHHhcCCHHHHHHHHhh
Q psy17691 620 LPGETLASRVAASQLATLGCPELIA--RTH------KEYQDIAIRLGTDRDYCEKALLY 670 (673)
Q Consensus 620 ~~g~~~~~r~~~~~l~~~gl~~~ia--~~~------~~yv~~a~~la~d~~~~~~~~~~ 670 (673)
-....... ++.. |...++. .+. ++..+...++.+|++.+++++..
T Consensus 310 s~~~~~~e-----~i~~-~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~ 362 (388)
T TIGR02149 310 SATGGIPE-----VVVD-GETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIA 362 (388)
T ss_pred eCCCCHHH-----HhhC-CCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 66543222 2222 3334443 244 78999999999999998887654
No 168
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=98.82 E-value=3.3e-09 Score=96.98 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=85.8
Q ss_pred cEEEecCCccc--ccChhhHH-HHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691 475 AIVYCNFNQLY--KIDPSTLQ-MWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK 551 (673)
Q Consensus 475 ~~~~~~~~~~~--K~~~~~~~-~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (673)
-++||++++.. |-...+++ +|.++.++.|+..|.++|.
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~--------------------------------------- 42 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGN--------------------------------------- 42 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECE---------------------------------------
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeC---------------------------------------
Confidence 46788888665 77778899 9999999999999999881
Q ss_pred CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCC--CCcchhhhhhhcCCceeecCCCcchhhh
Q psy17691 552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC--NGHTTSMDVLWTGTPVVTLPGETLASRV 629 (673)
Q Consensus 552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~--~g~~t~~eal~~GvPvvt~~g~~~~~r~ 629 (673)
++. .+++. ..++|.|+|.+ +++...++.+||++.|+.. +-+++++|+|++|+|||+... .+.
T Consensus 43 --~~~--~l~~~------~~~~v~~~g~~--~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~~~--- 106 (135)
T PF13692_consen 43 --GPD--ELKRL------RRPNVRFHGFV--EELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-GAE--- 106 (135)
T ss_dssp --SS---HHCCH------HHCTEEEE-S---HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-HCH---
T ss_pred --CHH--HHHHh------cCCCEEEcCCH--HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-chh---
Confidence 111 12222 24689999998 5899999999999998854 347899999999999999665 111
Q ss_pred HHHHHHhcCCCccccCCHHHHHHHHHHhcCC
Q psy17691 630 AASQLATLGCPELIARTHKEYQDIAIRLGTD 660 (673)
Q Consensus 630 ~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d 660 (673)
.+....|..-++..|.+++++...+|..|
T Consensus 107 --~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 107 --GIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp --CHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred --hheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 13333455557788999999999998765
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.82 E-value=1.2e-08 Score=85.29 Aligned_cols=81 Identities=33% Similarity=0.346 Sum_probs=73.5
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17691 129 LIQVSEAEECYNTALRLCPT--HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206 (673)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~--~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 206 (673)
.|++++|+..++++++.+|. +...++.+|.+|++.|++++|+..+++ .+.++.+...++.+|.++.++|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57999999999999999995 466788899999999999999999999 889999999999999999999999999999
Q ss_pred HHHH
Q psy17691 207 YKEA 210 (673)
Q Consensus 207 ~~~a 210 (673)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 170
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.81 E-value=6.7e-07 Score=99.26 Aligned_cols=85 Identities=20% Similarity=0.186 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691 185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD 264 (673)
Q Consensus 185 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~ 264 (673)
.+++.+|..|...|++++|+++.+++|+..|..++.|...|.+|...|++.+|.++++.|-++|..+..+....+..+.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCc
Q psy17691 265 SGKRG 269 (673)
Q Consensus 265 ~g~~~ 269 (673)
.|+.+
T Consensus 275 a~~~e 279 (517)
T PF12569_consen 275 AGRIE 279 (517)
T ss_pred CCCHH
Confidence 99987
No 171
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.81 E-value=3.3e-08 Score=105.66 Aligned_cols=155 Identities=14% Similarity=0.108 Sum_probs=116.4
Q ss_pred ccccccCCCCCcEEEecCCc--ccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691 464 TSRQQYGLPEDAIVYCNFNQ--LYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA 541 (673)
Q Consensus 464 ~~r~~~~l~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (673)
..|++++++.+.++|.++++ ..|..+.+++++.++.+..|+.+|+++|
T Consensus 177 ~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G------------------------------ 226 (360)
T cd04951 177 KIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAG------------------------------ 226 (360)
T ss_pred HHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEc------------------------------
Confidence 35677888888877777775 4589999999999999999999999987
Q ss_pred cCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeec
Q psy17691 542 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTL 620 (673)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~ 620 (673)
.+...+.+++.+++.|+. ++|.|.|.. ++....|..+|+++-|. ..+.|.+.+|||++|+|||+-
T Consensus 227 -----------~g~~~~~~~~~~~~~~~~-~~v~~~g~~--~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~ 292 (360)
T cd04951 227 -----------DGPLRATLERLIKALGLS-NRVKLLGLR--DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVAT 292 (360)
T ss_pred -----------CCCcHHHHHHHHHhcCCC-CcEEEeccc--ccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEe
Confidence 344456788888888984 899999964 56677888999997654 556699999999999999986
Q ss_pred CCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhc-CCHHHHHHHH
Q psy17691 621 PGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLG-TDRDYCEKAL 668 (673)
Q Consensus 621 ~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la-~d~~~~~~~~ 668 (673)
....... ++...|. -+...|.+++++...++. .+++.+..++
T Consensus 293 ~~~~~~e-----~i~~~g~-~~~~~~~~~~~~~i~~ll~~~~~~~~~~~ 335 (360)
T cd04951 293 DAGGVRE-----VVGDSGL-IVPISDPEALANKIDEILKMSGEERDIIG 335 (360)
T ss_pred cCCChhh-----EecCCce-EeCCCCHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5433322 2222221 123478999999999988 5666665544
No 172
>KOG0543|consensus
Probab=98.80 E-value=9e-08 Score=99.44 Aligned_cols=129 Identities=16% Similarity=0.106 Sum_probs=113.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy17691 121 SYIISVLLLIQVSEAEECYNTALRLCPT----H-----------ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAA 185 (673)
Q Consensus 121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~----~-----------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 185 (673)
..+..+++.|+|..|...|++++..-.. + ..++.|++.++.++++|.+|+.+..++|.++|+|..
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence 4556788899999999999999886331 1 237999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCC
Q psy17691 186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGA-LQCYSRAIQINP 249 (673)
Q Consensus 186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA-~~~~~~Al~l~p 249 (673)
+++..|.++..+|+|+.|+..|+++++++|+|..+...+..+-.+..++.+. .+.|.+++...+
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999998887776655 778888876544
No 173
>PRK11906 transcriptional regulator; Provisional
Probab=98.80 E-value=1.2e-07 Score=100.76 Aligned_cols=124 Identities=12% Similarity=0.093 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17691 131 QVSEAEECYNTAL---RLCPTHADSLNNLANIKREQ---------GYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG 198 (673)
Q Consensus 131 ~~~~A~~~~~~al---~~~p~~~~a~~~Lg~~~~~~---------g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 198 (673)
..+.|+.+|.+++ +++|+.+.++..++.++... .+..+|.+..++|++++|.++.++..+|.++...+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 5788999999999 99999999999999998754 35678899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy17691 199 KLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADA 254 (673)
Q Consensus 199 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a 254 (673)
+++.|+..|++|+.++|+.+.+|+..|.+....|+.++|.+.+++|++++|.-..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 99999999999999999999999999999999999999999999999999976544
No 174
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.80 E-value=4.9e-08 Score=104.18 Aligned_cols=150 Identities=20% Similarity=0.125 Sum_probs=111.1
Q ss_pred CCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhh
Q psy17691 471 LPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILW 548 (673)
Q Consensus 471 l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (673)
.+.+.+++++++++ .|..+.+++++.++. +.+++++|
T Consensus 187 ~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~----~~~l~i~G------------------------------------- 225 (357)
T cd03795 187 RAAGRPFFLFVGRLVYYKGLDVLLEAAAALP----DAPLVIVG------------------------------------- 225 (357)
T ss_pred CCCCCcEEEEecccccccCHHHHHHHHHhcc----CcEEEEEe-------------------------------------
Confidence 34455666666654 577777777776654 78888887
Q ss_pred hccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC---CCCCcchhhhhhhcCCceeecCCCcc
Q psy17691 549 LLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP---LCNGHTTSMDVLWTGTPVVTLPGETL 625 (673)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~---p~~g~~t~~eal~~GvPvvt~~g~~~ 625 (673)
.+.....+++.....+.. ++|.|.|.++.++....|..||+++-|. .++.|++++|||++|+|||+-.....
T Consensus 226 ----~g~~~~~~~~~~~~~~~~-~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~ 300 (357)
T cd03795 226 ----EGPLEAELEALAAALGLL-DRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTG 300 (357)
T ss_pred ----CChhHHHHHHHHHhcCCc-ceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCc
Confidence 333445677777778874 8999999999999999999999997664 35779999999999999999654333
Q ss_pred hhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 626 ASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 626 ~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
.. .+..-|-..++. .|.+++++....+.+|++.+++++...
T Consensus 301 ~~-----~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~ 343 (357)
T cd03795 301 GS-----YVNLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAA 343 (357)
T ss_pred hh-----HHhhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 32 122123334444 579999999999999999999887654
No 175
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.79 E-value=3.8e-07 Score=106.98 Aligned_cols=248 Identities=10% Similarity=0.071 Sum_probs=185.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcH----------------HHHHHHHHHHHHcCChhhhcCChhh
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFP----------------DAYCNLANALKEKGQINVLHKPPYK 64 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a----------------~a~~~la~~l~~~g~~~~A~~~~~~ 64 (673)
++++|.+.|++. .+.+...|..+...|.+.|+.+.+ ..+..+..++...|++++|.. .+.
T Consensus 274 ~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~-i~~ 349 (697)
T PLN03081 274 DIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ-AHA 349 (697)
T ss_pred CHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH-HHH
Confidence 468899998865 456788999999999999974433 345566677778888887764 233
Q ss_pred HHhhc--CCCc--hhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHH-HHHHHHHHcCCHHHHHHHH
Q psy17691 65 YTREL--APGN--RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTF-SYIISVLLLIQVSEAEECY 139 (673)
Q Consensus 65 ~~~~l--~p~~--~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~-~~~~~~~~~g~~~~A~~~~ 139 (673)
...+. .++. ...+...|...|+.+ ++...+.....+ +...| ..+..+.+.|+.++|++.|
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~--------------~A~~vf~~m~~~-d~~t~n~lI~~y~~~G~~~~A~~lf 414 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRME--------------DARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAVEMF 414 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHH--------------HHHHHHHhCCCC-CeeeHHHHHHHHHHcCCHHHHHHHH
Confidence 33322 2322 234455555555433 233333333344 34455 4456677799999999999
Q ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691 140 NTALRLC-PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE--FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS 216 (673)
Q Consensus 140 ~~al~~~-p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 216 (673)
++..+.. .-+...+..+...+...|+.++|.++|+...+...- +...|..+...|.+.|++++|.+.+++. ...|
T Consensus 415 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p- 492 (697)
T PLN03081 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP- 492 (697)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-
Confidence 9998753 224667888889999999999999999999875332 3457888999999999999999998764 2334
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 217 FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 217 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
+...|..+...+...|+++.|...+++.+++.|++...|..|..+|.+.|+++
T Consensus 493 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 493 TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHH
Confidence 46789999999999999999999999999999999999999999999999997
No 176
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.79 E-value=2.3e-07 Score=94.53 Aligned_cols=106 Identities=22% Similarity=0.296 Sum_probs=80.4
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q psy17691 150 ADSLNNLANIK-REQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF---ADAYS 222 (673)
Q Consensus 150 ~~a~~~Lg~~~-~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~ 222 (673)
....+..|..+ .+.|+|++|+..|++.++.+|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 35566666655 55678888888888888888876 4678888888888888888888888888776663 66778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy17691 223 NMGNTLKEMQDIQGALQCYSRAIQINPGFADAH 255 (673)
Q Consensus 223 ~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~ 255 (673)
.+|.++..+|++++|+..|+++++..|+...+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 888888888888888888888888888776543
No 177
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.77 E-value=4.1e-08 Score=104.52 Aligned_cols=149 Identities=17% Similarity=0.133 Sum_probs=111.3
Q ss_pred cccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCc
Q psy17691 467 QQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPN 544 (673)
Q Consensus 467 ~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (673)
..++ +.+.++|+.++++ .|..+.+++++.++..+ |+.+|+++|
T Consensus 190 ~~~~-~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~~~l~i~G--------------------------------- 234 (364)
T cd03814 190 ARLG-PPDRPVLLYVGRLAPEKNLEALLDADLPLRRR-PPVRLVIVG--------------------------------- 234 (364)
T ss_pred HHhC-CCCCeEEEEEeccccccCHHHHHHHHHHhhhc-CCceEEEEe---------------------------------
Confidence 3344 4445566666654 58888999999999888 899999988
Q ss_pred hhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCC
Q psy17691 545 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGE 623 (673)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~ 623 (673)
.+.....++ +. .++|.|.|..+.++....|..+|+++.|. ..+.|+|.+|||++|+|||+-...
T Consensus 235 --------~~~~~~~~~------~~-~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~ 299 (364)
T cd03814 235 --------DGPARARLE------AR-YPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAG 299 (364)
T ss_pred --------CCchHHHHh------cc-CCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCC
Confidence 122222222 33 47899999999999999999999998765 667799999999999999998876
Q ss_pred cchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 624 TLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 624 ~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
..... +.. +-..++. .+.+++++...++..|++.+.++....
T Consensus 300 ~~~~~-----i~~-~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~ 343 (364)
T cd03814 300 GPADI-----VTD-GENGLLVEPGDAEAFAAALAALLADPELRRRMAARA 343 (364)
T ss_pred Cchhh-----hcC-CcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 55442 222 2233443 467789999999999999998887654
No 178
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.77 E-value=3.7e-08 Score=101.98 Aligned_cols=148 Identities=14% Similarity=0.037 Sum_probs=121.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHH
Q psy17691 127 LLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG--KLTDAL 204 (673)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~eA~ 204 (673)
...|++++|++.+.+. ++.++....-.+|...++++.|.+.++..-+.+.+..-+....+++....| ++.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHH
Confidence 3478999999888764 678888888999999999999999999999988887666666666766666 599999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc----------cccCC
Q psy17691 205 LHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG----------FFIRT 274 (673)
Q Consensus 205 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~----------l~l~p 274 (673)
..|++..+..+.++..++.++.++..+|++++|.+.++++++.+|+++++..|++.+...+|+.. ...+|
T Consensus 188 y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 188 YIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 99999887778889999999999999999999999999999999999999999999999999873 23567
Q ss_pred CCHHH
Q psy17691 275 DLNSA 279 (673)
Q Consensus 275 ~~~~a 279 (673)
+++..
T Consensus 268 ~h~~~ 272 (290)
T PF04733_consen 268 NHPLV 272 (290)
T ss_dssp TSHHH
T ss_pred CChHH
Confidence 76653
No 179
>PLN02316 synthase/transferase
Probab=98.76 E-value=6.1e-08 Score=113.91 Aligned_cols=119 Identities=18% Similarity=0.044 Sum_probs=88.8
Q ss_pred ccccccCCCC-CcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhh
Q psy17691 464 TSRQQYGLPE-DAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLK 540 (673)
Q Consensus 464 ~~r~~~~l~~-~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (673)
..|+++||+. +.+++++++|+. |-.+.+++++.++++ ++.+|+|+|.. .
T Consensus 828 ~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~~qlVIvG~G---p----------------------- 879 (1036)
T PLN02316 828 ALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RNGQVVLLGSA---P----------------------- 879 (1036)
T ss_pred HHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--cCcEEEEEeCC---C-----------------------
Confidence 4678899994 678999999886 888899999999986 47899988710 0
Q ss_pred ccCchhhhhccCChhhhhhHHHHHHHcCCC-CCeEEeccCcChHHHHHhcccccEEec-CCCCCCcchhhhhhhcCCc-e
Q psy17691 541 AVPNSILWLLKFPAVGEANIQATAQALGLD-QHRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTP-V 617 (673)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~rv~~~~~~~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~GvP-v 617 (673)
....+..+++...++|+. ++||.|.+..+...-..+|..+||||= |..++-|.|.+|||++|+| |
T Consensus 880 ------------d~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppV 947 (1036)
T PLN02316 880 ------------DPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPV 947 (1036)
T ss_pred ------------CHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeE
Confidence 011256778888888875 579999876543222368999999965 5577889999999999975 5
Q ss_pred eecCC
Q psy17691 618 VTLPG 622 (673)
Q Consensus 618 vt~~g 622 (673)
|+-.|
T Consensus 948 vs~vG 952 (1036)
T PLN02316 948 VRKTG 952 (1036)
T ss_pred EEcCC
Confidence 55444
No 180
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.76 E-value=5.9e-08 Score=107.38 Aligned_cols=165 Identities=10% Similarity=0.027 Sum_probs=108.8
Q ss_pred ccCCCCCcEEEecCCccc--ccChhhHHHHHHH--HhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccC
Q psy17691 468 QYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNV--LKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVP 543 (673)
Q Consensus 468 ~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~i--l~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (673)
.++++.+..++++++|+. |..+.++++++++ ++..++..+ ++|. |+. +..+...
T Consensus 241 ~~~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~l-i~G~---g~~-------~~~l~~~----------- 298 (439)
T TIGR02472 241 PFLKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLVL-VLGC---RDD-------IRKMESQ----------- 298 (439)
T ss_pred hhccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEEE-EeCC---ccc-------cccccHH-----------
Confidence 456666666777777664 8899999999864 333344332 3441 000 0000000
Q ss_pred chhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccc----cEEec-CCCCCCcchhhhhhhcCCcee
Q psy17691 544 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----DVCLD-TPLCNGHTTSMDVLWTGTPVV 618 (673)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~----Di~Ld-~~p~~g~~t~~eal~~GvPvv 618 (673)
.....+.+.+...+.|+. ++|+|.|.++.++....|+.+ |+|+- |..++-|+|.+|||++|+|||
T Consensus 299 ---------~~~~~~~~~~~~~~~~l~-~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV 368 (439)
T TIGR02472 299 ---------QREVLQKVLLLIDRYDLY-GKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIV 368 (439)
T ss_pred ---------HHHHHHHHHHHHHHcCCC-ceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEE
Confidence 001123455667888994 899999999888888888866 99965 556677999999999999999
Q ss_pred ecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691 619 TLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLY 670 (673)
Q Consensus 619 t~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~ 670 (673)
+-....... ++. -|-..+++ .|.+++.+...++.+|++.++++...
T Consensus 369 ~s~~gg~~e-----iv~-~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~ 416 (439)
T TIGR02472 369 ATDDGGPRD-----IIA-NCRNGLLVDVLDLEAIASALEDALSDSSQWQLWSRN 416 (439)
T ss_pred EeCCCCcHH-----Hhc-CCCcEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 865433222 221 23345543 58999999999999999988887654
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.76 E-value=1.8e-07 Score=104.43 Aligned_cols=87 Identities=17% Similarity=0.088 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17691 132 VSEAEECYNTALRL--CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209 (673)
Q Consensus 132 ~~~A~~~~~~al~~--~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 209 (673)
..++....++++.+ +|.++.++..+|..+...|++++|...+++|++++| +..+|..+|.++...|++++|++.|++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45556666666664 677788888889988889999999999999999998 478899999999999999999999999
Q ss_pred HHHhCCCCHH
Q psy17691 210 AIRIQPSFAD 219 (673)
Q Consensus 210 al~~~p~~~~ 219 (673)
|++++|.++.
T Consensus 479 A~~L~P~~pt 488 (517)
T PRK10153 479 AFNLRPGENT 488 (517)
T ss_pred HHhcCCCCch
Confidence 9999998764
No 182
>PLN03077 Protein ECB2; Provisional
Probab=98.75 E-value=1.2e-06 Score=105.33 Aligned_cols=157 Identities=15% Similarity=0.125 Sum_probs=113.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcC
Q psy17691 121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV--FPEFAAAHSNLASVLQQQG 198 (673)
Q Consensus 121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~la~~~~~~g 198 (673)
..+..+.+.|+.++|...|++. +.+..+|+.+...|.+.|+.++|++.|++..+. .|+ ...+..+-..+.+.|
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g 603 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSG 603 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcC
Confidence 3345556678888888888775 456778888888888888888888888887764 344 344555556677888
Q ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-------
Q psy17691 199 KLTDALLHYKEAIRIQ--PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG------- 269 (673)
Q Consensus 199 ~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~------- 269 (673)
++++|.++|++..+.. ..+...|..+..+|.+.|++++|.+.+++. .+.|+ ...|..|...+...|+.+
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHH
Confidence 8888888888877432 123567888888888888888888888775 34554 666777777777667665
Q ss_pred --cccCCCCHHHHHHHH
Q psy17691 270 --FFIRTDLNSAYFWLL 284 (673)
Q Consensus 270 --l~l~p~~~~a~~~l~ 284 (673)
++++|++...|..++
T Consensus 682 ~l~~l~p~~~~~y~ll~ 698 (857)
T PLN03077 682 HIFELDPNSVGYYILLC 698 (857)
T ss_pred HHHhhCCCCcchHHHHH
Confidence 567888877776655
No 183
>PLN03077 Protein ECB2; Provisional
Probab=98.75 E-value=1.4e-06 Score=104.70 Aligned_cols=246 Identities=13% Similarity=0.116 Sum_probs=169.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH---------------HHHHHcCChhhhcCChhhH
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLA---------------NALKEKGQINVLHKPPYKY 65 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la---------------~~l~~~g~~~~A~~~~~~~ 65 (673)
++++|.+.|++..+ .+...|..+...|.+.|+.+.+...+... .++...|..+.+.. ....
T Consensus 439 ~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~-i~~~ 514 (857)
T PLN03077 439 CIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKE-IHAH 514 (857)
T ss_pred CHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHH-HHHH
Confidence 46788888887543 35667888888888888655544444332 23333344333321 1111
Q ss_pred Hhh--cCCCc--hhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHH-HHHHHHcCCHHHHHHHHH
Q psy17691 66 TRE--LAPGN--RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSY-IISVLLLIQVSEAEECYN 140 (673)
Q Consensus 66 ~~~--l~p~~--~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~-~~~~~~~g~~~~A~~~~~ 140 (673)
... +.++. ...+-..|...|+ .+++...+... ..+...|.. +..+...|+.++|++.|+
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~--------------~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGR--------------MNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCC--------------HHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 111 11111 1112222333232 22333333322 445566644 455667999999999999
Q ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691 141 TALRL--CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFP--EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS 216 (673)
Q Consensus 141 ~al~~--~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 216 (673)
+..+. .|+ ...+..+-..+...|+.++|.++|+...+..+ -+...|..+...+.+.|++++|.+.+++. ...|+
T Consensus 579 ~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 579 RMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred HHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 98875 454 45566677789999999999999999885432 23578899999999999999999999875 35565
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 217 FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 217 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
...|..|-..+...|+.+.|....++.++++|++...+..|+.+|...|+++
T Consensus 657 -~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~ 708 (857)
T PLN03077 657 -PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWD 708 (857)
T ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChH
Confidence 7788888888999999999999999999999999999999999999999987
No 184
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.75 E-value=9.2e-08 Score=112.18 Aligned_cols=164 Identities=10% Similarity=0.049 Sum_probs=115.0
Q ss_pred cCCCCCcEEEecCCccc--ccChhhHHHHHHHHhc--ccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCc
Q psy17691 469 YGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKA--VPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPN 544 (673)
Q Consensus 469 ~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~--~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (673)
++.+.+..++++++|+. |....+++++..+... .|+.++ ++|. ++. . ..+.+
T Consensus 473 ~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~L-IiG~---gdd-~------d~l~~------------- 528 (1050)
T TIGR02468 473 FFTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTL-IMGN---RDD-I------DEMSS------------- 528 (1050)
T ss_pred hcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEEE-EEec---Cch-h------hhhhc-------------
Confidence 45566667777778765 8999999999998643 355554 3441 000 0 00000
Q ss_pred hhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccc----cEEecC-CCCCCcchhhhhhhcCCceee
Q psy17691 545 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----DVCLDT-PLCNGHTTSMDVLWTGTPVVT 619 (673)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~----Di~Ld~-~p~~g~~t~~eal~~GvPvvt 619 (673)
..+.....+++...+.|+. ++|.|.|..+.++...+|+.+ |||+-| +-++=|+|.+|||++|+|||+
T Consensus 529 -------~~~~~l~~L~~li~~lgL~-g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVA 600 (1050)
T TIGR02468 529 -------GSSSVLTSVLKLIDKYDLY-GQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVA 600 (1050)
T ss_pred -------cchHHHHHHHHHHHHhCCC-CeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEE
Confidence 0122345678888999995 999999999998888888877 699664 567779999999999999998
Q ss_pred cCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691 620 LPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLY 670 (673)
Q Consensus 620 ~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~ 670 (673)
-.-..... ++ .-|-+.++. .|.+++.+...++.+|++.+++++..
T Consensus 601 SdvGG~~E-----II-~~g~nGlLVdP~D~eaLA~AL~~LL~Dpelr~~m~~~ 647 (1050)
T TIGR02468 601 TKNGGPVD-----IH-RVLDNGLLVDPHDQQAIADALLKLVADKQLWAECRQN 647 (1050)
T ss_pred eCCCCcHH-----Hh-ccCCcEEEECCCCHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 64322221 22 124555554 47899999999999999999988764
No 185
>PHA01633 putative glycosyl transferase group 1
Probab=98.75 E-value=3.9e-08 Score=103.35 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=84.3
Q ss_pred cccccCCC-CCcEEEecCCcc--cccChhhHHHHHHHHhcccC----eeEEeeccCCcCCCCCCCCcccccCCCCccchh
Q psy17691 465 SRQQYGLP-EDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPN----SILWLLKFPAVGEANISRPLFRPRLRPSASTSI 537 (673)
Q Consensus 465 ~r~~~~l~-~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (673)
.|++++.+ .+.++|++++|+ .|..+.++++|.++.++.|+ .++++++
T Consensus 137 ~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG-------------------------- 190 (335)
T PHA01633 137 LKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVIS-------------------------- 190 (335)
T ss_pred HHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEc--------------------------
Confidence 45666654 466788888875 48999999999999988886 3666554
Q ss_pred hhhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEec---cCcChHHHHHhcccccEEec-CCCCCCcchhhhhhhc
Q psy17691 538 VLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFS---NVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWT 613 (673)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~---~~~~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~ 613 (673)
. ..+.+.++ .++|.|. |..+.++....|..+|+++- |..++-|.+.+|||+|
T Consensus 191 ---------------~--------~~~~~l~l-~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~ 246 (335)
T PHA01633 191 ---------------H--------KQFTQLEV-PANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAM 246 (335)
T ss_pred ---------------H--------HHHHHcCC-CCcEEEEecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHc
Confidence 0 12355677 4899998 56678899999999999966 4577889999999999
Q ss_pred CCceeecCCC
Q psy17691 614 GTPVVTLPGE 623 (673)
Q Consensus 614 GvPvvt~~g~ 623 (673)
|+|||+-...
T Consensus 247 G~PVVas~~~ 256 (335)
T PHA01633 247 GTPVIHQLMP 256 (335)
T ss_pred CCCEEEccCC
Confidence 9999986444
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.74 E-value=3.4e-07 Score=93.28 Aligned_cols=104 Identities=16% Similarity=0.282 Sum_probs=92.6
Q ss_pred hhHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHH
Q psy17691 117 GTTFSYIISV-LLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSN 189 (673)
Q Consensus 117 ~~~~~~~~~~-~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~ 189 (673)
...|..+..+ +..|+|++|+..|++.++.+|++ +.+++.+|.+|+..|++++|+..|+++++.+|++ +++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3344455444 55799999999999999999998 5899999999999999999999999999998875 789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy17691 190 LASVLQQQGKLTDALLHYKEAIRIQPSFADA 220 (673)
Q Consensus 190 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 220 (673)
+|.++..+|++++|++.|+++++..|+...+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999999999997654
No 187
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.74 E-value=7.2e-08 Score=103.17 Aligned_cols=152 Identities=18% Similarity=0.123 Sum_probs=110.0
Q ss_pred cccccCCCCCcE--EEecCCcc--cccChhhHHHHHHHHhc-ccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691 465 SRQQYGLPEDAI--VYCNFNQL--YKIDPSTLQMWVNVLKA-VPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVL 539 (673)
Q Consensus 465 ~r~~~~l~~~~~--~~~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (673)
.+..++++.+.. .|++.... .|..+.++++|..+.+. .|+.+++++|.
T Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~--------------------------- 233 (365)
T cd03825 181 ARKRLGLPADKKIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGA--------------------------- 233 (365)
T ss_pred HHHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCC---------------------------
Confidence 456677776643 35555544 79999999999987765 68889988871
Q ss_pred hccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcC-hHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCce
Q psy17691 540 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA-KEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPV 617 (673)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~-~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPv 617 (673)
+.... ..++ .++|.|+|..+ .++....|+.+|+++-|. ..+.|.+++|||.+|+||
T Consensus 234 --------------~~~~~-------~~~~-~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~Pv 291 (365)
T cd03825 234 --------------SDPEI-------PPDL-PFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPV 291 (365)
T ss_pred --------------Cchhh-------hccC-CCceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCE
Confidence 11100 1144 37899999998 778888999999998765 678899999999999999
Q ss_pred eecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 618 VTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 618 vt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
|+.....+.. ++.. +-..++. .|.+++++...++.+|++.+.+++...
T Consensus 292 I~~~~~~~~e-----~~~~-~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 341 (365)
T cd03825 292 VAFDVGGIPD-----IVDH-GVTGYLAKPGDPEDLAEGIEWLLADPDEREELGEAA 341 (365)
T ss_pred EEecCCCChh-----heeC-CCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9876544433 1211 2234443 378999999999999999888777643
No 188
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.74 E-value=3.1e-07 Score=98.22 Aligned_cols=113 Identities=23% Similarity=0.163 Sum_probs=82.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691 128 LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHY 207 (673)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 207 (673)
..+++++|++.+++..+.+|+ +...++.++...++-.+|++.++++++..|.+...+...+..+...++++.|++..
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iA 257 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIA 257 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 356777777777777776654 45557777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17691 208 KEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSR 243 (673)
Q Consensus 208 ~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 243 (673)
++++++.|++...|..|+.+|..+|++++|+..+..
T Consensus 258 k~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 258 KKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 777777777777777777777777777777765553
No 189
>KOG2376|consensus
Probab=98.73 E-value=4.9e-07 Score=97.25 Aligned_cols=128 Identities=18% Similarity=0.148 Sum_probs=83.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCC
Q psy17691 121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE-FAAAHSNLASVLQQQGK 199 (673)
Q Consensus 121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~la~~~~~~g~ 199 (673)
..+..+|++++|++|...|+..++.+.++.+.......+-... -..+. ..+.....|. ..+.++|.+.++...|+
T Consensus 115 L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a--~l~~~--~~q~v~~v~e~syel~yN~Ac~~i~~gk 190 (652)
T KOG2376|consen 115 LRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA--ALQVQ--LLQSVPEVPEDSYELLYNTACILIENGK 190 (652)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--hhhHH--HHHhccCCCcchHHHHHHHHHHHHhccc
Confidence 4455556666666666666666665554443322221111100 00000 2222333343 57889999999999999
Q ss_pred HHHHHHHHHHHHHhC--------CC--C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691 200 LTDALLHYKEAIRIQ--------PS--F-----ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA 252 (673)
Q Consensus 200 ~~eA~~~~~~al~~~--------p~--~-----~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~ 252 (673)
|.+|++.+++++++. .+ . ..+...++.++..+|+.++|...|...++.+|-+.
T Consensus 191 y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 191 YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 999999999995541 11 1 23677899999999999999999999999988664
No 190
>PRK14098 glycogen synthase; Provisional
Probab=98.73 E-value=1.3e-07 Score=105.68 Aligned_cols=157 Identities=14% Similarity=0.043 Sum_probs=108.9
Q ss_pred ccccccCCC--CCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691 464 TSRQQYGLP--EDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVL 539 (673)
Q Consensus 464 ~~r~~~~l~--~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (673)
..++++|++ ++.+++++++|+. |-.+.+++++.++++ ++.+|+++|. |
T Consensus 294 ~l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~---G----------------------- 345 (489)
T PRK14098 294 ALLEEVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGS---G----------------------- 345 (489)
T ss_pred HHHHHhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeC---C-----------------------
Confidence 456778998 4567888888765 888999999999885 4789999881 0
Q ss_pred hccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecC-CCCCCcchhhhhhhcCCcee
Q psy17691 540 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPVV 618 (673)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~GvPvv 618 (673)
+...++.+++..+++ ++||.|.+..+.++....|..+|++|-| ..++-|.|.+|||++|+|+|
T Consensus 346 -------------~~~~~~~l~~l~~~~---~~~V~~~g~~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppV 409 (489)
T PRK14098 346 -------------DKEYEKRFQDFAEEH---PEQVSVQTEFTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPV 409 (489)
T ss_pred -------------CHHHHHHHHHHHHHC---CCCEEEEEecCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeE
Confidence 111345677776665 3799999998888888999999999765 46688999999999997666
Q ss_pred ecCCCcchhhhHHHHHHhc---CCCcccc--CCHHHHHHHHHH---hcCCHHHHHHHHh
Q psy17691 619 TLPGETLASRVAASQLATL---GCPELIA--RTHKEYQDIAIR---LGTDRDYCEKALL 669 (673)
Q Consensus 619 t~~g~~~~~r~~~~~l~~~---gl~~~ia--~~~~~yv~~a~~---la~d~~~~~~~~~ 669 (673)
+........ .+... |-+.++. .|.+++.+...+ +.+|++.+++++.
T Consensus 410 v~~~GGl~d-----~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~~~~~~~ 463 (489)
T PRK14098 410 AYAGGGIVE-----TIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHDEERWEELVL 463 (489)
T ss_pred EecCCCCce-----eeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 543221111 01110 2233433 367777766544 5578888877754
No 191
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.72 E-value=5.1e-07 Score=93.72 Aligned_cols=134 Identities=24% Similarity=0.295 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------H
Q psy17691 118 TTFSYIISVLLLIQVSEAEECYNTALRLCPT--H----ADSLNNLANIKREQ-GYIEEATRLYLKALEVFPEF------A 184 (673)
Q Consensus 118 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~----~~a~~~Lg~~~~~~-g~~~eA~~~~~~al~~~p~~------~ 184 (673)
..+..+..++...++++|+.+|++++++.-. . +.++..+|.+|... |++++|+++|++|+++.... .
T Consensus 76 ~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~ 155 (282)
T PF14938_consen 76 KAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAA 155 (282)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHH
Confidence 3455566677777999999999999997422 2 56889999999999 99999999999999874322 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691 185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF-------ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251 (673)
Q Consensus 185 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~ 251 (673)
.++..+|.++...|+|++|++.|++.....-++ ...+...+.|+...|+...|...+++....+|..
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 678899999999999999999999998764221 2356778889999999999999999999998865
No 192
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.71 E-value=8.3e-08 Score=103.32 Aligned_cols=138 Identities=12% Similarity=0.084 Sum_probs=102.4
Q ss_pred cEEEecCCccc----ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhc
Q psy17691 475 AIVYCNFNQLY----KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLL 550 (673)
Q Consensus 475 ~~~~~~~~~~~----K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (673)
.+++++++++. |.....++.+..+. ++.+|+++|
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~---~~~~l~ivG--------------------------------------- 217 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTT---GEWQLHIIG--------------------------------------- 217 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhC---CCeEEEEEe---------------------------------------
Confidence 45666767753 66667777777653 478999888
Q ss_pred cCChhhhhhHHHHHHHcCCCCCeEEeccCcC--hHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecC-CCcch
Q psy17691 551 KFPAVGEANIQATAQALGLDQHRILFSNVAA--KEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLP-GETLA 626 (673)
Q Consensus 551 ~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~--~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~-g~~~~ 626 (673)
+++..+.+++..++.|+. ++|.|.|..+ .++....|..+|+++-|. .++-|+|++|||++|+|||+.. .....
T Consensus 218 --~g~~~~~l~~~~~~~~l~-~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~ 294 (359)
T PRK09922 218 --DGSDFEKCKAYSRELGIE-QRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGPR 294 (359)
T ss_pred --CCccHHHHHHHHHHcCCC-CeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCChH
Confidence 455567888888999994 8999999764 366777889999997654 4566999999999999999976 32222
Q ss_pred hhhHHHHHHhcCCCccc--cCCHHHHHHHHHHhcCCHHH
Q psy17691 627 SRVAASQLATLGCPELI--ARTHKEYQDIAIRLGTDRDY 663 (673)
Q Consensus 627 ~r~~~~~l~~~gl~~~i--a~~~~~yv~~a~~la~d~~~ 663 (673)
.++.. |...++ ..|.+++++...++.+|++.
T Consensus 295 -----eiv~~-~~~G~lv~~~d~~~la~~i~~l~~~~~~ 327 (359)
T PRK09922 295 -----DIIKP-GLNGELYTPGNIDEFVGKLNKVISGEVK 327 (359)
T ss_pred -----HHccC-CCceEEECCCCHHHHHHHHHHHHhCccc
Confidence 23322 445544 36899999999999999973
No 193
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.70 E-value=8.1e-08 Score=102.41 Aligned_cols=155 Identities=14% Similarity=0.041 Sum_probs=113.7
Q ss_pred CCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhh
Q psy17691 470 GLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSIL 547 (673)
Q Consensus 470 ~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (673)
..+.+.++++.++++ .|..+.+++++..+....|+.+|+++|.
T Consensus 190 ~~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~----------------------------------- 234 (365)
T cd03809 190 LYLLPRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGK----------------------------------- 234 (365)
T ss_pred hcCCCCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecC-----------------------------------
Confidence 334445555555654 5888999999999999988889998871
Q ss_pred hhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcch
Q psy17691 548 WLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLA 626 (673)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~ 626 (673)
.............+.+. .++|.|.|..+.++....|..+|+++-|. ..+.|.+.+|||++|+|||+-....+.
T Consensus 235 -----~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~ 308 (365)
T cd03809 235 -----RGWLNEELLARLRELGL-GDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSLP 308 (365)
T ss_pred -----CccccHHHHHHHHHcCC-CCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCcc
Confidence 11112223333356777 58999999999999999999999998764 567799999999999999997665443
Q ss_pred hhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 627 SRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 627 ~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
..+ ...|. -+...|.++.++...++.+|++.+.++.+..
T Consensus 309 e~~-----~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 347 (365)
T cd03809 309 EVA-----GDAAL-YFDPLDPEALAAAIERLLEDPALREELRERG 347 (365)
T ss_pred cee-----cCcee-eeCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 322 11121 1334689999999999999999999887643
No 194
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.70 E-value=2e-07 Score=107.13 Aligned_cols=168 Identities=11% Similarity=0.038 Sum_probs=110.6
Q ss_pred ccccCC--CCCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691 466 RQQYGL--PEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA 541 (673)
Q Consensus 466 r~~~~l--~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (673)
++.+|+ +.+..++++++|+. |..+.++++++++....++++|+++|....+.. + .+
T Consensus 539 ~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~-------------s--~d----- 598 (784)
T TIGR02470 539 DEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKE-------------S--KD----- 598 (784)
T ss_pred HHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCccccc-------------c--cc-----
Confidence 356776 45667778888775 889999999988755456789998872100000 0 00
Q ss_pred cCchhhhhccCC-hhhhhhHHHHHHHcCCCCCeEEeccCc-ChH---HHHHhc-ccccEEec-CCCCCCcchhhhhhhcC
Q psy17691 542 VPNSILWLLKFP-AVGEANIQATAQALGLDQHRILFSNVA-AKE---EHVRRG-QLADVCLD-TPLCNGHTTSMDVLWTG 614 (673)
Q Consensus 542 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~rv~~~~~~-~~~---~~~~~~-~~~Di~Ld-~~p~~g~~t~~eal~~G 614 (673)
.. ....+.+++.+.++|+. ++|.|+|.. +.. ++...+ ..+|||+- |..++-|.|.+|||++|
T Consensus 599 ----------~ee~~~i~~L~~la~~~gL~-g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcG 667 (784)
T TIGR02470 599 ----------REEQAEIEKMHNLIDQYQLH-GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCG 667 (784)
T ss_pred ----------hhHHHHHHHHHHHHHHhCCC-CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcC
Confidence 00 01235677888999995 999999964 433 444433 35689865 56778899999999999
Q ss_pred CceeecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhc----CCHHHHHHHHhh
Q psy17691 615 TPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLG----TDRDYCEKALLY 670 (673)
Q Consensus 615 vPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la----~d~~~~~~~~~~ 670 (673)
+|||+-.-..... ++. -|-++++. .|.++..+...++. +|++.+.+++..
T Consensus 668 lPVVAT~~GG~~E-----iV~-dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~ 723 (784)
T TIGR02470 668 LPTFATRFGGPLE-----IIQ-DGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKISQG 723 (784)
T ss_pred CCEEEcCCCCHHH-----Hhc-CCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999754322211 111 15556554 36788888777654 799999888765
No 195
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.68 E-value=2.3e-07 Score=98.42 Aligned_cols=146 Identities=23% Similarity=0.224 Sum_probs=112.0
Q ss_pred CCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhh
Q psy17691 470 GLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSIL 547 (673)
Q Consensus 470 ~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (673)
+...+.++++++++. .|....+++++..+.+..|+.++.+.|
T Consensus 197 ~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g------------------------------------ 240 (377)
T cd03798 197 GLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVG------------------------------------ 240 (377)
T ss_pred cCCCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEc------------------------------------
Confidence 444566777777765 577888999999999888999999887
Q ss_pred hhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcch
Q psy17691 548 WLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLA 626 (673)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~ 626 (673)
.+.....+++.....++. ++|.+.|.++.++....|..+|+++-+. ..+.|++++|||++|+|||+-....+.
T Consensus 241 -----~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~ 314 (377)
T cd03798 241 -----DGPLREALEALAAELGLE-DRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGGIP 314 (377)
T ss_pred -----CCcchHHHHHHHHhcCCc-ceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCCChH
Confidence 233345566777778884 8999999999999999999999998765 568899999999999999986654332
Q ss_pred hhhHHHHHHhcCCCccc--cCCHHHHHHHHHHhcCCHHH
Q psy17691 627 SRVAASQLATLGCPELI--ARTHKEYQDIAIRLGTDRDY 663 (673)
Q Consensus 627 ~r~~~~~l~~~gl~~~i--a~~~~~yv~~a~~la~d~~~ 663 (673)
. ++.. +-..++ ..+.++.++...++.+|++.
T Consensus 315 ~-----~~~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 315 E-----IITD-GENGLLVPPGDPEALAEAILRLLADPWL 347 (377)
T ss_pred H-----HhcC-CcceeEECCCCHHHHHHHHHHHhcCcHH
Confidence 2 2222 222233 35899999999999999884
No 196
>KOG4234|consensus
Probab=98.68 E-value=2.3e-07 Score=87.04 Aligned_cols=108 Identities=26% Similarity=0.361 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691 153 LNNLANIKREQGYIEEATRLYLKALEVFPEF-----AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227 (673)
Q Consensus 153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 227 (673)
+..-|+-++..|+|++|..-|..||++.|.. ..+|.|.|.++.+++.++.|+..+.++|+++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 4455788899999999999999999999886 45788999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691 228 LKEMQDIQGALQCYSRAIQINPGFADAHSNLAS 260 (673)
Q Consensus 228 ~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~ 260 (673)
|.++.++++|++.|++.++.+|...++.-....
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 999999999999999999999998877765544
No 197
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.68 E-value=7.4e-06 Score=84.80 Aligned_cols=156 Identities=12% Similarity=0.063 Sum_probs=114.0
Q ss_pred HhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhC------------------------------------------
Q psy17691 110 YALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLC------------------------------------------ 146 (673)
Q Consensus 110 ~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~------------------------------------------ 146 (673)
....|.++...... ..+...|++.+...+..+.-+..
T Consensus 180 l~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l 259 (400)
T COG3071 180 LEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL 259 (400)
T ss_pred HHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh
Confidence 44577787777655 44556888888888877765542
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226 (673)
Q Consensus 147 p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 226 (673)
.+++++...++.-+.+.|+.++|.+..+.+++..-+.. ....++ ...-++.+.=++..++.++..|+++..+..||.
T Consensus 260 r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~ 336 (400)
T COG3071 260 RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGR 336 (400)
T ss_pred hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 11233444556667778888888888888887654433 111111 234567777778888888889999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 227 ~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
+|.+.+.+.+|..+|+.|++..|+ ...+..+|.++.++|+.+
T Consensus 337 L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 337 LALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPE 378 (400)
T ss_pred HHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChH
Confidence 999999999999999999998886 566778999999999864
No 198
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.67 E-value=2.1e-07 Score=97.97 Aligned_cols=151 Identities=20% Similarity=0.197 Sum_probs=113.9
Q ss_pred cCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchh
Q psy17691 469 YGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSI 546 (673)
Q Consensus 469 ~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (673)
++.+.+.++|++++++. |..+.+++++..+....|+.+|+++|
T Consensus 183 ~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G----------------------------------- 227 (353)
T cd03811 183 LGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILG----------------------------------- 227 (353)
T ss_pred cCCCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEc-----------------------------------
Confidence 34566677888888664 88899999999999888999999988
Q ss_pred hhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcc
Q psy17691 547 LWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETL 625 (673)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~ 625 (673)
.+...+.+.+.....|+. ++|.|.|..+ +....|..+|+++-|. ..+.|++.+|||++|+|||+......
T Consensus 228 ------~~~~~~~~~~~~~~~~~~-~~v~~~g~~~--~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~ 298 (353)
T cd03811 228 ------DGPLREELEALAKELGLA-DRVHFLGFQS--NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGP 298 (353)
T ss_pred ------CCccHHHHHHHHHhcCCC-ccEEEecccC--CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCCh
Confidence 233455667778888984 8999999854 5667888999998876 45679999999999999999765433
Q ss_pred hhhhHHHHHHhcCCCcccc--CCHHHH---HHHHHHhcCCHHHHHHHHh
Q psy17691 626 ASRVAASQLATLGCPELIA--RTHKEY---QDIAIRLGTDRDYCEKALL 669 (673)
Q Consensus 626 ~~r~~~~~l~~~gl~~~ia--~~~~~y---v~~a~~la~d~~~~~~~~~ 669 (673)
.. ++.. |-..++. .+.+++ ++....+..|++.+.+++.
T Consensus 299 ~e-----~i~~-~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 341 (353)
T cd03811 299 RE-----ILED-GENGLLVPVGDEAALAAAALALLDLLLDPELRERLAA 341 (353)
T ss_pred HH-----HhcC-CCceEEECCCCHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 22 2322 3334444 356667 7888888899999888876
No 199
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.66 E-value=2.3e-07 Score=98.41 Aligned_cols=148 Identities=17% Similarity=0.061 Sum_probs=108.1
Q ss_pred CCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhh
Q psy17691 471 LPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILW 548 (673)
Q Consensus 471 l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (673)
.+.+.++|++++++ .|..+.+++++..+.. ++.+|+++|.
T Consensus 187 ~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~~~~l~i~G~------------------------------------ 228 (359)
T cd03823 187 PPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--GDIELVIVGN------------------------------------ 228 (359)
T ss_pred CCCCceEEEEEecCccccCHHHHHHHHHHHHh--cCcEEEEEcC------------------------------------
Confidence 44556677777755 4777888899888776 8999998871
Q ss_pred hccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC--CCCCcchhhhhhhcCCceeecCCCcch
Q psy17691 549 LLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP--LCNGHTTSMDVLWTGTPVVTLPGETLA 626 (673)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~--p~~g~~t~~eal~~GvPvvt~~g~~~~ 626 (673)
+.......... +. .++|.|.|..+.++....|..+|+++-|. ..+.|++++|||++|+|||+-......
T Consensus 229 -----~~~~~~~~~~~---~~-~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~ 299 (359)
T cd03823 229 -----GLELEEESYEL---EG-DPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGGMA 299 (359)
T ss_pred -----chhhhHHHHhh---cC-CCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCHH
Confidence 11111111111 44 47899999999999999999999998764 568899999999999999997654432
Q ss_pred hhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 627 SRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 627 ~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
. ++.. |...++. .|.+++++...++.+|++.++.++...
T Consensus 300 e-----~i~~-~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~ 340 (359)
T cd03823 300 E-----LVRD-GVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGI 340 (359)
T ss_pred H-----HhcC-CCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhH
Confidence 2 2322 2234443 357999999999999999999887754
No 200
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.66 E-value=1.8e-07 Score=98.87 Aligned_cols=148 Identities=18% Similarity=0.121 Sum_probs=107.2
Q ss_pred CCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhc
Q psy17691 473 EDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLL 550 (673)
Q Consensus 473 ~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (673)
.+.++|++++++ .|..+.+++++..+.+..|+.+|+++|.
T Consensus 186 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~-------------------------------------- 227 (359)
T cd03808 186 EDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGD-------------------------------------- 227 (359)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcC--------------------------------------
Confidence 345666666654 5888899999999988889999999882
Q ss_pred cCChhhhhhHHH-HHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcchhh
Q psy17691 551 KFPAVGEANIQA-TAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLASR 628 (673)
Q Consensus 551 ~~~~~~~~~~~~-~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~~r 628 (673)
+........ .+...+. .++|.|.|. .++....|+.+|+++-|. .++.|++.+|||++|+|||+-.......
T Consensus 228 ---~~~~~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~- 300 (359)
T cd03808 228 ---GDEENPAAILEIEKLGL-EGRVEFLGF--RDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCRE- 300 (359)
T ss_pred ---CCcchhhHHHHHHhcCC-cceEEEeec--cccHHHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCchh-
Confidence 111111111 2455565 478999998 567888899999997765 5677999999999999999976544322
Q ss_pred hHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691 629 VAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRDYCEKALLY 670 (673)
Q Consensus 629 ~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~ 670 (673)
++.. |-..++. .|.+++++...++..|++.+.+++..
T Consensus 301 ----~i~~-~~~g~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 339 (359)
T cd03808 301 ----AVID-GVNGFLVPPGDAEALADAIERLIEDPELRARMGQA 339 (359)
T ss_pred ----hhhc-CcceEEECCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 2332 3344554 46899999999999999998887654
No 201
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.66 E-value=6e-06 Score=91.77 Aligned_cols=119 Identities=21% Similarity=0.082 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691 151 DSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE 230 (673)
Q Consensus 151 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 230 (673)
.+++.+|+.|...|++++|+++.+++++..|..++.+...|.++...|++.+|.+.++.|-+++..+-.+....+..+.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC-------HHHHH--HHHHHHHHcCCCc
Q psy17691 231 MQDIQGALQCYSRAIQINPGF-------ADAHS--NLASIHKDSGKRG 269 (673)
Q Consensus 231 ~g~~~eA~~~~~~Al~l~p~~-------~~a~~--~La~~~~~~g~~~ 269 (673)
.|+.++|.+.+..-.+.+-+. .-.|+ ..|.+|.+.|++.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999988765544211 11233 3567788887765
No 202
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.64 E-value=2.2e-07 Score=103.97 Aligned_cols=158 Identities=15% Similarity=0.013 Sum_probs=110.2
Q ss_pred ccccccCCCC--CcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691 464 TSRQQYGLPE--DAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVL 539 (673)
Q Consensus 464 ~~r~~~~l~~--~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (673)
..|+++|++. +.+++++++|+. |-.+.+++++.++.+. +.+|+++|..
T Consensus 278 ~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g-------------------------- 329 (473)
T TIGR02095 278 ALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTG-------------------------- 329 (473)
T ss_pred HHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCC--------------------------
Confidence 4678899986 778888888775 8888999999998864 4889988710
Q ss_pred hccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCcee
Q psy17691 540 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVV 618 (673)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvv 618 (673)
+...++.+++...+.+ +++.|.+..+.++....|..+|+++-|. .++-|.+.+|||++|+|||
T Consensus 330 -------------~~~~~~~l~~~~~~~~---~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI 393 (473)
T TIGR02095 330 -------------DPELEEALRELAERYP---GNVRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPI 393 (473)
T ss_pred -------------CHHHHHHHHHHHHHCC---CcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeE
Confidence 1122445666555543 5788887777777778999999998765 4566999999999999988
Q ss_pred ecCCCcchhhhHHHHHHh-----cCCCcccc--CCHHHHHHHHHHhcC----CHHHHHHHHhh
Q psy17691 619 TLPGETLASRVAASQLAT-----LGCPELIA--RTHKEYQDIAIRLGT----DRDYCEKALLY 670 (673)
Q Consensus 619 t~~g~~~~~r~~~~~l~~-----~gl~~~ia--~~~~~yv~~a~~la~----d~~~~~~~~~~ 670 (673)
+.....+.. ++.. .+-..++. .|.+++.+...++.. |++.+++++..
T Consensus 394 ~s~~gg~~e-----~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~ 451 (473)
T TIGR02095 394 VRRTGGLAD-----TVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPSLWEALQKN 451 (473)
T ss_pred EccCCCccc-----eEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 754432221 1111 01233333 478888777666555 89988888754
No 203
>PRK14099 glycogen synthase; Provisional
Probab=98.64 E-value=3.6e-07 Score=102.00 Aligned_cols=160 Identities=23% Similarity=0.146 Sum_probs=103.5
Q ss_pred ccccccCCCC--CcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691 464 TSRQQYGLPE--DAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVL 539 (673)
Q Consensus 464 ~~r~~~~l~~--~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (673)
..|+++|++. +.++|++++|+. |..+.++++..++++. +.+|+++|. |
T Consensus 282 ~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~--~~~lvivG~---G----------------------- 333 (485)
T PRK14099 282 ALQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALPTLLGE--GAQLALLGS---G----------------------- 333 (485)
T ss_pred HHHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHHHHHhc--CcEEEEEec---C-----------------------
Confidence 4567899984 567888888765 8899999999988753 678888871 0
Q ss_pred hccCchhhhhccCChhhhhhHHHHHHHcCCCCCeE-EeccCcChHHHHHhc-ccccEEecC-CCCCCcchhhhhhhcCC-
Q psy17691 540 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRI-LFSNVAAKEEHVRRG-QLADVCLDT-PLCNGHTTSMDVLWTGT- 615 (673)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv-~~~~~~~~~~~~~~~-~~~Di~Ld~-~p~~g~~t~~eal~~Gv- 615 (673)
+...++.+++...+++ +++ .|+|. .++....| ..+|+|+-| ..++-|.+.+|||++|+
T Consensus 334 -------------~~~~~~~l~~l~~~~~---~~v~~~~G~--~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~p 395 (485)
T PRK14099 334 -------------DAELEARFRAAAQAYP---GQIGVVIGY--DEALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAV 395 (485)
T ss_pred -------------CHHHHHHHHHHHHHCC---CCEEEEeCC--CHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCC
Confidence 1122455666665553 455 68886 35555555 579999765 46678999999999995
Q ss_pred ceeecCCCcchhhhHH--HHHHhcC-CCcccc--CCHHHHHHHHHH---hcCCHHHHHHHHhh
Q psy17691 616 PVVTLPGETLASRVAA--SQLATLG-CPELIA--RTHKEYQDIAIR---LGTDRDYCEKALLY 670 (673)
Q Consensus 616 Pvvt~~g~~~~~r~~~--~~l~~~g-l~~~ia--~~~~~yv~~a~~---la~d~~~~~~~~~~ 670 (673)
|||+-.|.. ..-+.. ......| -..++. .|.+++.+...+ +.+|++.+++++..
T Consensus 396 pVvs~~GGl-~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d~~~~~~l~~~ 457 (485)
T PRK14099 396 PVVARVGGL-ADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFADPVAWRRLQRN 457 (485)
T ss_pred cEEeCCCCc-cceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 666644421 110000 0000001 123443 467888776654 78899998888764
No 204
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=98.63 E-value=2.8e-07 Score=100.07 Aligned_cols=157 Identities=13% Similarity=0.048 Sum_probs=106.3
Q ss_pred ccccccCCCCCcEEEecCCcc--cccChhhHHHHHHHHh----cccCee-EEeeccCCcCCCCCCCCcccccCCCCccch
Q psy17691 464 TSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLK----AVPNSI-LWLLKFPAVGEANISRPLFRPRLRPSASTS 536 (673)
Q Consensus 464 ~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~----~~p~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (673)
..|+++|++++..+++.+++. .|....+++.+..++. ..|+.+ +++.|
T Consensus 195 ~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G------------------------- 249 (382)
T PLN02605 195 ELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICG------------------------- 249 (382)
T ss_pred HHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEEC-------------------------
Confidence 467889999887776666654 5666777777776552 235554 44555
Q ss_pred hhhhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCc
Q psy17691 537 IVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTP 616 (673)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvP 616 (673)
.+. .+++.+.+... ..+|.|+|..+ +...+|..+|+++.+ +||.|++|||++|+|
T Consensus 250 ----------------~~~---~~~~~L~~~~~-~~~v~~~G~~~--~~~~l~~aaDv~V~~---~g~~ti~EAma~g~P 304 (382)
T PLN02605 250 ----------------RNK---KLQSKLESRDW-KIPVKVRGFVT--NMEEWMGACDCIITK---AGPGTIAEALIRGLP 304 (382)
T ss_pred ----------------CCH---HHHHHHHhhcc-cCCeEEEeccc--cHHHHHHhCCEEEEC---CCcchHHHHHHcCCC
Confidence 111 22333333333 25799999875 577788899999863 478899999999999
Q ss_pred eeecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCC-HHHHHHHHhhh
Q psy17691 617 VVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTD-RDYCEKALLYH 671 (673)
Q Consensus 617 vvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d-~~~~~~~~~~~ 671 (673)
||+..--.......+..+...|..- ...|.++..+...+|..| ++.+++|+...
T Consensus 305 vI~~~~~pgqe~gn~~~i~~~g~g~-~~~~~~~la~~i~~ll~~~~~~~~~m~~~~ 359 (382)
T PLN02605 305 IILNGYIPGQEEGNVPYVVDNGFGA-FSESPKEIARIVAEWFGDKSDELEAMSENA 359 (382)
T ss_pred EEEecCCCccchhhHHHHHhCCcee-ecCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9987632212222344455556643 458999999999999888 99998887653
No 205
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.63 E-value=4.9e-06 Score=84.10 Aligned_cols=124 Identities=18% Similarity=0.150 Sum_probs=102.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHh
Q psy17691 120 FSYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQG---------------Y---IEEATRLYLKALE 178 (673)
Q Consensus 120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g---------------~---~~eA~~~~~~al~ 178 (673)
+..+..+++.+++++|+..+++.++.+|++ +.+++.+|.++...+ + ..+|+..|++.++
T Consensus 73 l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~ 152 (243)
T PRK10866 73 LDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR 152 (243)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH
Confidence 345567788999999999999999999887 567889998864443 1 3578899999999
Q ss_pred hCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHH
Q psy17691 179 VFPEFAA-----------------AHSNLASVLQQQGKLTDALLHYKEAIRIQPSF---ADAYSNMGNTLKEMQDIQGAL 238 (673)
Q Consensus 179 ~~p~~~~-----------------~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~ 238 (673)
..|+... --+..|..|.+.|+|..|+.-++.+++..|+. .+++..++..|..+|..++|.
T Consensus 153 ~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~ 232 (243)
T PRK10866 153 GYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQAD 232 (243)
T ss_pred HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHH
Confidence 9998731 12356788999999999999999999998875 578999999999999999998
Q ss_pred HHHHH
Q psy17691 239 QCYSR 243 (673)
Q Consensus 239 ~~~~~ 243 (673)
.+.+.
T Consensus 233 ~~~~~ 237 (243)
T PRK10866 233 KVAKI 237 (243)
T ss_pred HHHHH
Confidence 87654
No 206
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.62 E-value=3.3e-07 Score=94.96 Aligned_cols=133 Identities=17% Similarity=0.099 Sum_probs=111.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy17691 122 YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG--YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGK 199 (673)
Q Consensus 122 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 199 (673)
....++.+++++.|.+.++++-+.+.+..-+....+++....| ++.+|...|++..+..+..+..++.++.++..+|+
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~ 216 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH 216 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 3456778999999999999999888877666666677777666 59999999999988888899999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHH
Q psy17691 200 LTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDI-QGALQCYSRAIQINPGFADA 254 (673)
Q Consensus 200 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~eA~~~~~~Al~l~p~~~~a 254 (673)
|++|.+.++++++.+|++++++.|+..+...+|+. +.+.+++.+....+|+++-.
T Consensus 217 ~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 217 YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999999999999999998 66778888888889988754
No 207
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.61 E-value=8.6e-07 Score=78.80 Aligned_cols=96 Identities=28% Similarity=0.235 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q psy17691 151 DSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS---FADAYSNM 224 (673)
Q Consensus 151 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~l 224 (673)
.+++++|.++-..|+.++|+..|+++++..... ..++..+|..+..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 355666666666777777777777776654332 456666677777777777777777776666666 55566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q psy17691 225 GNTLKEMQDIQGALQCYSRAIQ 246 (673)
Q Consensus 225 g~~~~~~g~~~eA~~~~~~Al~ 246 (673)
+.++...|+.++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 6666677777777666666553
No 208
>PLN02275 transferase, transferring glycosyl groups
Probab=98.60 E-value=4.3e-07 Score=98.26 Aligned_cols=133 Identities=15% Similarity=0.091 Sum_probs=96.0
Q ss_pred EEEecCCcc--cccChhhHHHHHHHH-----------------hcccCeeEEeeccCCcCCCCCCCCcccccCCCCccch
Q psy17691 476 IVYCNFNQL--YKIDPSTLQMWVNVL-----------------KAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTS 536 (673)
Q Consensus 476 ~~~~~~~~~--~K~~~~~~~~~~~il-----------------~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (673)
+++++.+++ .|-.+.++++...+. +..|+.+|+++|
T Consensus 214 ~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG------------------------- 268 (371)
T PLN02275 214 ALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITG------------------------- 268 (371)
T ss_pred EEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEe-------------------------
Confidence 444555554 477778888877664 235889999988
Q ss_pred hhhhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEecc-CcChHHHHHhcccccEEecCC----CCCCcchhhhhh
Q psy17691 537 IVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSN-VAAKEEHVRRGQLADVCLDTP----LCNGHTTSMDVL 611 (673)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~-~~~~~~~~~~~~~~Di~Ld~~----p~~g~~t~~eal 611 (673)
+|+.++.+++.++++|++ + ++|.+ .++.++....|..+|+++-+. .++-+++++|||
T Consensus 269 ----------------~G~~~~~l~~~~~~~~l~-~-v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAm 330 (371)
T PLN02275 269 ----------------KGPQKAMYEEKISRLNLR-H-VAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMF 330 (371)
T ss_pred ----------------CCCCHHHHHHHHHHcCCC-c-eEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHH
Confidence 566778899999999995 5 77655 689999999999999997422 234588999999
Q ss_pred hcCCceeecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHh
Q psy17691 612 WTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRL 657 (673)
Q Consensus 612 ~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~l 657 (673)
+||+|||+...... ..++.. |-..++..+.+++.+...+|
T Consensus 331 A~G~PVVa~~~gg~-----~eiv~~-g~~G~lv~~~~~la~~i~~l 370 (371)
T PLN02275 331 GCGLPVCAVSYSCI-----GELVKD-GKNGLLFSSSSELADQLLEL 370 (371)
T ss_pred HCCCCEEEecCCCh-----HHHccC-CCCeEEECCHHHHHHHHHHh
Confidence 99999998653222 123332 55566677788877766554
No 209
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.60 E-value=7.1e-06 Score=84.92 Aligned_cols=125 Identities=20% Similarity=0.197 Sum_probs=107.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17691 119 TFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG 198 (673)
Q Consensus 119 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 198 (673)
.-.++..+...|+.++|.+..+++++..-+.. ....++. ..-++...=++..++.++..|+++..+..||.++++.+
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~--l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~ 342 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPR--LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNK 342 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhh--cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh
Confidence 33556667789999999999999999754432 2222222 35678888999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 199 KLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI 247 (673)
Q Consensus 199 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l 247 (673)
.|.+|..+++.+++..|. ...+..+|.++.++|+..+|.+++++++.+
T Consensus 343 ~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 343 LWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999886 678999999999999999999999999854
No 210
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.60 E-value=2e-07 Score=99.77 Aligned_cols=150 Identities=12% Similarity=0.111 Sum_probs=102.5
Q ss_pred cccCCCCCcEEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCc
Q psy17691 467 QQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPN 544 (673)
Q Consensus 467 ~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (673)
..++++.+.+ +++++++ .|....++++++++.. +.+|+++|
T Consensus 186 ~~~~~~~~~~-i~~~G~~~~~Kg~~~li~a~~~l~~---~~~l~ivG--------------------------------- 228 (363)
T cd04955 186 KKYGLEPGRY-YLLVGRIVPENNIDDLIEAFSKSNS---GKKLVIVG--------------------------------- 228 (363)
T ss_pred HhcCCCCCcE-EEEEecccccCCHHHHHHHHHhhcc---CceEEEEc---------------------------------
Confidence 3455554432 3445554 4777888888877653 78899888
Q ss_pred hhhhhccCChhhhhhHHHHHH-HcCCCCCeEEeccCcChHHHHHhcccccEEec-CCC-CCCcchhhhhhhcCCceeecC
Q psy17691 545 SILWLLKFPAVGEANIQATAQ-ALGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPL-CNGHTTSMDVLWTGTPVVTLP 621 (673)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld-~~p-~~g~~t~~eal~~GvPvvt~~ 621 (673)
.+.....+.+.+. ..+. .++|+|+|.++.++....|..+|+++- |.. ++-|++.+|||++|+|||+-.
T Consensus 229 --------~~~~~~~~~~~~~~~~~~-~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~ 299 (363)
T cd04955 229 --------NADHNTPYGKLLKEKAAA-DPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASD 299 (363)
T ss_pred --------CCCCcchHHHHHHHHhCC-CCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEec
Confidence 1212223444444 5666 489999999999999999999999955 445 677999999999999999865
Q ss_pred CCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691 622 GETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLY 670 (673)
Q Consensus 622 g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~ 670 (673)
...... .++-..++....+.+.+...++.+|++.+.++++.
T Consensus 300 ~~~~~e--------~~~~~g~~~~~~~~l~~~i~~l~~~~~~~~~~~~~ 340 (363)
T cd04955 300 NPFNRE--------VLGDKAIYFKVGDDLASLLEELEADPEEVSAMAKA 340 (363)
T ss_pred CCccce--------eecCCeeEecCchHHHHHHHHHHhCHHHHHHHHHH
Confidence 432211 11113344444445888899999999888887654
No 211
>PRK15331 chaperone protein SicA; Provisional
Probab=98.59 E-value=8.3e-07 Score=82.03 Aligned_cols=100 Identities=12% Similarity=-0.006 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy17691 118 TTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ 197 (673)
Q Consensus 118 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 197 (673)
..|..+-.++..|++++|...|+-....+|.+.+.+..||.++..+++|++|+..|..+..++++++...+..|.++..+
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh
Confidence 34566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q psy17691 198 GKLTDALLHYKEAIRIQPSFA 218 (673)
Q Consensus 198 g~~~eA~~~~~~al~~~p~~~ 218 (673)
|+.++|+.+|+.+++ .|.+.
T Consensus 119 ~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 119 RKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred CCHHHHHHHHHHHHh-CcchH
Confidence 999999999999998 45543
No 212
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.58 E-value=6.3e-07 Score=99.98 Aligned_cols=157 Identities=17% Similarity=0.101 Sum_probs=104.5
Q ss_pred ccccccCCCC-CcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhh
Q psy17691 464 TSRQQYGLPE-DAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLK 540 (673)
Q Consensus 464 ~~r~~~~l~~-~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (673)
..|+++|++. +.+++++++|+. |-.+.+++++.++++. +.+|+++|. |
T Consensus 270 ~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~---g------------------------ 320 (466)
T PRK00654 270 ALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGT---G------------------------ 320 (466)
T ss_pred HHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEec---C------------------------
Confidence 4578899985 677888888765 8899999999999864 788988871 0
Q ss_pred ccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEe-ccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCcee
Q psy17691 541 AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILF-SNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVV 618 (673)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~-~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvv 618 (673)
+...++.+++...++| +++.+ .|. +.+.....|..+|+++-|. .++-|+|.+|||++|+|||
T Consensus 321 ------------~~~~~~~l~~l~~~~~---~~v~~~~g~-~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V 384 (466)
T PRK00654 321 ------------DPELEEAFRALAARYP---GKVGVQIGY-DEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPI 384 (466)
T ss_pred ------------cHHHHHHHHHHHHHCC---CcEEEEEeC-CHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEE
Confidence 1123456777777775 45654 454 4444557889999997754 5677999999999999887
Q ss_pred ecCCCcchhhhHHHHHHhc-----CCCcccc--CCHHHHHHHHHHhcC---CHHHHHHHHhh
Q psy17691 619 TLPGETLASRVAASQLATL-----GCPELIA--RTHKEYQDIAIRLGT---DRDYCEKALLY 670 (673)
Q Consensus 619 t~~g~~~~~r~~~~~l~~~-----gl~~~ia--~~~~~yv~~a~~la~---d~~~~~~~~~~ 670 (673)
+........ ++..- +-..++. .|.+++.+...++.. |++.+.+++..
T Consensus 385 ~~~~gG~~e-----~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~ 441 (466)
T PRK00654 385 VRRTGGLAD-----TVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQPPLWRALQRQ 441 (466)
T ss_pred EeCCCCccc-----eeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 754322211 01000 0223333 477888777666544 77777766543
No 213
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=98.57 E-value=7.4e-07 Score=96.72 Aligned_cols=107 Identities=10% Similarity=-0.007 Sum_probs=76.5
Q ss_pred hhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHH
Q psy17691 556 GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLA 635 (673)
Q Consensus 556 ~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~ 635 (673)
.++.+++.....+ ++|+|+|..+ +....|..+|+++. .+||.|++|||++|+|||+.....-.....+.++.
T Consensus 243 ~~~~l~~~~~~~~---~~v~~~g~~~--~~~~l~~~aD~~v~---~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~ 314 (380)
T PRK13609 243 LKQSLEDLQETNP---DALKVFGYVE--NIDELFRVTSCMIT---KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFE 314 (380)
T ss_pred HHHHHHHHHhcCC---CcEEEEechh--hHHHHHHhccEEEe---CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHH
Confidence 3456666655554 6899999874 45567788999983 46789999999999999985321111222334455
Q ss_pred hcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 636 TLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 636 ~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
..|.. ++..+.++..+...++.+|++.+++++...
T Consensus 315 ~~G~~-~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~ 349 (380)
T PRK13609 315 RKGAA-VVIRDDEEVFAKTEALLQDDMKLLQMKEAM 349 (380)
T ss_pred hCCcE-EEECCHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 55653 455789999999999999999999887653
No 214
>KOG1111|consensus
Probab=98.57 E-value=2e-07 Score=94.81 Aligned_cols=102 Identities=17% Similarity=0.138 Sum_probs=90.0
Q ss_pred EEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCC
Q psy17691 476 IVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFP 553 (673)
Q Consensus 476 ~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (673)
++....+|+. |-.+-.+.+..++-++.|+.++++.| +
T Consensus 196 ~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~G-----------------------------------------D 234 (426)
T KOG1111|consen 196 ITIVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIG-----------------------------------------D 234 (426)
T ss_pred eEEEEEeeeeeccchHHHHHHHHHHHhcCCCeeEEEec-----------------------------------------C
Confidence 5666666765 99999999999999999999999988 5
Q ss_pred hhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceee
Q psy17691 554 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVT 619 (673)
Q Consensus 554 ~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt 619 (673)
|+-+..+++..+++-+ .+||.++|.+++++..+.|.+-||||.|. .+.=|++.+||+.+|+|||+
T Consensus 235 GPk~i~lee~lEk~~l-~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVs 300 (426)
T KOG1111|consen 235 GPKRIDLEEMLEKLFL-QDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVS 300 (426)
T ss_pred CcccchHHHHHHHhhc-cCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEE
Confidence 6666677777788877 59999999999999999999999999975 88999999999999999995
No 215
>PLN00142 sucrose synthase
Probab=98.56 E-value=7.6e-07 Score=102.54 Aligned_cols=167 Identities=10% Similarity=-0.011 Sum_probs=111.3
Q ss_pred cccCC--CCCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhcc
Q psy17691 467 QQYGL--PEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAV 542 (673)
Q Consensus 467 ~~~~l--~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (673)
+.+|+ +.+..++++++|+. |..+..+++++++.+..++++|+++|....+.. + ..
T Consensus 563 e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~-------------s--~d------ 621 (815)
T PLN00142 563 EHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSK-------------S--KD------ 621 (815)
T ss_pred HHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccc-------------c--cc------
Confidence 45676 34455777778775 888999999999877778899999872100000 0 00
Q ss_pred CchhhhhccCCh-hhhhhHHHHHHHcCCCCCeEEeccCc----ChHHHHHhcc-cccEEecC-CCCCCcchhhhhhhcCC
Q psy17691 543 PNSILWLLKFPA-VGEANIQATAQALGLDQHRILFSNVA----AKEEHVRRGQ-LADVCLDT-PLCNGHTTSMDVLWTGT 615 (673)
Q Consensus 543 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~rv~~~~~~----~~~~~~~~~~-~~Di~Ld~-~p~~g~~t~~eal~~Gv 615 (673)
... .....+.+.+.+.|+. ++|.|+|.. +..+....+. .+|||+-| +-++-|.|.+|||++|+
T Consensus 622 ---------~ee~~el~~L~~La~~lgL~-~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~Gl 691 (815)
T PLN00142 622 ---------REEIAEIKKMHSLIEKYNLK-GQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGL 691 (815)
T ss_pred ---------HHHHHHHHHHHHHHHHcCCC-CcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCC
Confidence 000 1124577788899995 999998843 3356666555 47999765 56677999999999999
Q ss_pred ceeecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHH----hcCCHHHHHHHHhh
Q psy17691 616 PVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIR----LGTDRDYCEKALLY 670 (673)
Q Consensus 616 Pvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~----la~d~~~~~~~~~~ 670 (673)
|||+-.-..... ++. -|.+.++. .+.++..+...+ +.+|++.+.+++..
T Consensus 692 PVVATdvGG~~E-----IV~-dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~ 746 (815)
T PLN00142 692 PTFATCQGGPAE-----IIV-DGVSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKISDA 746 (815)
T ss_pred CEEEcCCCCHHH-----Hhc-CCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999854322211 111 26666654 378888777654 45899999988765
No 216
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=98.53 E-value=8.4e-07 Score=96.65 Aligned_cols=94 Identities=15% Similarity=0.061 Sum_probs=74.4
Q ss_pred CeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccCCHHHHH
Q psy17691 572 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQ 651 (673)
Q Consensus 572 ~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv 651 (673)
++|.|.|.. ++...+|..+|+++- -+||.|++|||++|+|+|+.....-.....+-++...|.. ++..|.++.+
T Consensus 256 ~~v~~~G~~--~~~~~~~~~aDl~I~---k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g-~~~~~~~~l~ 329 (391)
T PRK13608 256 ENVLILGYT--KHMNEWMASSQLMIT---KPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFG-KIADTPEEAI 329 (391)
T ss_pred CCeEEEecc--chHHHHHHhhhEEEe---CCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcE-EEeCCHHHHH
Confidence 579999986 466777889999984 2588999999999999999743222345566777777875 4467999999
Q ss_pred HHHHHhcCCHHHHHHHHhhh
Q psy17691 652 DIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 652 ~~a~~la~d~~~~~~~~~~~ 671 (673)
+...+|.+|++.+++|+...
T Consensus 330 ~~i~~ll~~~~~~~~m~~~~ 349 (391)
T PRK13608 330 KIVASLTNGNEQLTNMISTM 349 (391)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999988764
No 217
>KOG4648|consensus
Probab=98.53 E-value=3.2e-07 Score=92.43 Aligned_cols=109 Identities=23% Similarity=0.270 Sum_probs=87.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691 153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ 232 (673)
Q Consensus 153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 232 (673)
....|+-|+++|.|+||+.||.+++..+|.++..+.|.+..|++++++..|..-+..|+.++.....+|...|.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 44567888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691 233 DIQGALQCYSRAIQINPGFADAHSNLASI 261 (673)
Q Consensus 233 ~~~eA~~~~~~Al~l~p~~~~a~~~La~~ 261 (673)
...+|.+.++.+|++.|++.+....++.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 88888888888888888876665555443
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.53 E-value=4.8e-07 Score=73.14 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=40.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSN 257 (673)
Q Consensus 191 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~ 257 (673)
..+|...+++++|+++++++++++|+++..+..+|.++.++|++++|++.|+++++..|++..+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3455566666666666666666666666666666666666666666666666666666665555443
No 219
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.53 E-value=2.7e-07 Score=73.47 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=37.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691 195 QQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259 (673)
Q Consensus 195 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La 259 (673)
...|++++|++.|+++++.+|++..++..+|.+|.+.|++++|...+++++..+|+++..+.-++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34555666666666666666666666666666666666666666666666666665555444443
No 220
>KOG3785|consensus
Probab=98.53 E-value=1e-05 Score=82.16 Aligned_cols=244 Identities=17% Similarity=0.139 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCCC---------------cHHHHHHHHHHHHHcCChhhhcCChhhH
Q psy17691 2 IDLAIDTYRRAIELQPNFP-DAYCNLANALKEKGQPN---------------FPDAYCNLANALKEKGQINVLHKPPYKY 65 (673)
Q Consensus 2 ~~eAi~~~~kAL~l~P~~~-~a~~~Lg~~~~~~g~~~---------------~a~a~~~la~~l~~~g~~~~A~~~~~~~ 65 (673)
|.-|+..++-.+..+.+.. .....+|.|++++|+++ .++.+.++|-++.-.|.+.+|...
T Consensus 38 ytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~---- 113 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI---- 113 (557)
T ss_pred chhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH----
Confidence 6678888887776654443 55666788888888733 345566777777777777766421
Q ss_pred HhhcCCCchhhhhhh---hhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691 66 TRELAPGNRIRIGYV---SSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTA 142 (673)
Q Consensus 66 ~~~l~p~~~~~l~~~---~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~a 142 (673)
..-.|......-.. ...++ .++.+-.+...+......-+..+...+..-.|++|+..|++.
T Consensus 114 -~~ka~k~pL~~RLlfhlahkln---------------dEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 114 -AEKAPKTPLCIRLLFHLAHKLN---------------DEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred -HhhCCCChHHHHHHHHHHHHhC---------------cHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222111111 11111 122222333333333344455566667777899999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHH----------------
Q psy17691 143 LRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ--GKLTDAL---------------- 204 (673)
Q Consensus 143 l~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~eA~---------------- 204 (673)
+..+|+.......+|.+|.++.-++-+.+.+.-.++..|++.-+.+.++..++++ |+..++.
T Consensus 178 L~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~ 257 (557)
T KOG3785|consen 178 LQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIE 257 (557)
T ss_pred HhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHH
Confidence 9999999999999999999999999999999999999999998888888777654 3322221
Q ss_pred HHHH----------HHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691 205 LHYK----------EAIRIQPS----FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR 268 (673)
Q Consensus 205 ~~~~----------~al~~~p~----~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~ 268 (673)
..++ -|++.-|. -+++..||...|.++++..+|+...+ +++|..+.-+.--|.++...|+-
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhh
Confidence 1111 12222222 25678888888889999998888765 46888888888888888887764
No 221
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.52 E-value=3e-07 Score=73.17 Aligned_cols=64 Identities=27% Similarity=0.199 Sum_probs=35.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy17691 128 LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191 (673)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 191 (673)
..|++++|+..|+++++.+|++.++++.+|.+|.+.|++++|...+++++..+|+++..+..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3455555555555555555555555555555555555555555555555555555554444443
No 222
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.52 E-value=9e-06 Score=75.70 Aligned_cols=134 Identities=23% Similarity=0.248 Sum_probs=109.0
Q ss_pred hcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHH
Q psy17691 111 ALSPDDGTTFSYIISVLLLIQVSEAEECYNTALR-LCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF--AAAH 187 (673)
Q Consensus 111 ~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~ 187 (673)
...|....-+.++..+.+.|++.||..+|++++. +.-+++..+..+++..+..+++.+|...+++..+.+|.. +...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3456666666777778888999999999988887 466778888888888999999999999999988888764 6778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691 188 SNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAI 245 (673)
Q Consensus 188 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 245 (673)
..+|.++..+|++.+|...|+.++...|. +.+...++..+.++|+.++|..-|....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 88888899999999999999999888886 7778888888888898888877665544
No 223
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.52 E-value=3e-06 Score=75.40 Aligned_cols=93 Identities=31% Similarity=0.272 Sum_probs=82.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHH
Q psy17691 120 FSYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPE---FAAAHSNLASV 193 (673)
Q Consensus 120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~la~~ 193 (673)
|..+..+-..|+.++|+.+|+++++..... ..++..+|..+..+|++++|+..+++++...|+ +..+...++.+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 344555667999999999999999975444 568999999999999999999999999999898 78889999999
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q psy17691 194 LQQQGKLTDALLHYKEAIR 212 (673)
Q Consensus 194 ~~~~g~~~eA~~~~~~al~ 212 (673)
+...|++++|++.+-.++.
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999988775
No 224
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.51 E-value=4.7e-07 Score=96.95 Aligned_cols=97 Identities=12% Similarity=0.044 Sum_probs=73.2
Q ss_pred CCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCcccc--C
Q psy17691 568 GLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--R 645 (673)
Q Consensus 568 g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~ 645 (673)
+. .++|+|.|.++.++....|..+|+++-|.-++-|++.+|||+||+|||+........ ++.. |-..++. .
T Consensus 239 ~~-~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~~~e-----~i~~-~~~G~~~~~~ 311 (351)
T cd03804 239 KA-GPNVTFLGRVSDEELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGGALE-----TVID-GVTGILFEEQ 311 (351)
T ss_pred hc-CCCEEEecCCCHHHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCCCcc-----eeeC-CCCEEEeCCC
Confidence 44 489999999999999999999999987655888999999999999999865432221 1221 2233333 5
Q ss_pred CHHHHHHHHHHhcCCH-HHHHHHHhhh
Q psy17691 646 THKEYQDIAIRLGTDR-DYCEKALLYH 671 (673)
Q Consensus 646 ~~~~yv~~a~~la~d~-~~~~~~~~~~ 671 (673)
+.++.++....+.+|+ ..++++++..
T Consensus 312 ~~~~la~~i~~l~~~~~~~~~~~~~~~ 338 (351)
T cd03804 312 TVESLAAAVERFEKNEDFDPQAIRAHA 338 (351)
T ss_pred CHHHHHHHHHHHHhCcccCHHHHHHHH
Confidence 7899999999999988 5666666543
No 225
>KOG4340|consensus
Probab=98.50 E-value=2.3e-06 Score=84.88 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691 183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAI 245 (673)
Q Consensus 183 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 245 (673)
......+.|.+.++.|++++|++-|+.+++...-++-.-++++.++++.|+++.|+++..+.+
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEII 205 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555555555544443
No 226
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.49 E-value=7.2e-07 Score=72.06 Aligned_cols=69 Identities=28% Similarity=0.268 Sum_probs=49.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691 157 ANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225 (673)
Q Consensus 157 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 225 (673)
..+|.+.+++++|+++++++++++|+++..+..+|.++..+|++++|++.++++++..|++..+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456677777777777777777777777777777777777777777777777777777777666554443
No 227
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.49 E-value=7.5e-07 Score=96.60 Aligned_cols=157 Identities=18% Similarity=0.151 Sum_probs=103.9
Q ss_pred ccccccCCCCCcEE-EecCC-ccc---ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhh
Q psy17691 464 TSRQQYGLPEDAIV-YCNFN-QLY---KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIV 538 (673)
Q Consensus 464 ~~r~~~~l~~~~~~-~~~~~-~~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (673)
..|+++|++.+..+ +...+ +.. ++.+.+++++..+.+..|+.++++.+.
T Consensus 175 ~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~-------------------------- 228 (380)
T PRK00025 175 AARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLV-------------------------- 228 (380)
T ss_pred HHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC--------------------------
Confidence 35677899876543 32222 332 456788899998888889988887651
Q ss_pred hhccCchhhhhccCChhhhhhHHHHHHHc-CCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCce
Q psy17691 539 LKAVPNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPV 617 (673)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPv 617 (673)
++..++.+++...+. |+. +.+.. .+...+|..+|+++-+ +|++++||+++|+||
T Consensus 229 --------------~~~~~~~~~~~~~~~~~~~---v~~~~----~~~~~~~~~aDl~v~~----sG~~~lEa~a~G~Pv 283 (380)
T PRK00025 229 --------------NPKRREQIEEALAEYAGLE---VTLLD----GQKREAMAAADAALAA----SGTVTLELALLKVPM 283 (380)
T ss_pred --------------ChhhHHHHHHHHhhcCCCC---eEEEc----ccHHHHHHhCCEEEEC----ccHHHHHHHHhCCCE
Confidence 123345666666666 663 44432 3567788899999774 377888999999999
Q ss_pred eecCCCcchhhhHHHHHH---hcCC----------Ccccc--CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 618 VTLPGETLASRVAASQLA---TLGC----------PELIA--RTHKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 618 vt~~g~~~~~r~~~~~l~---~~gl----------~~~ia--~~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
|+.+.-.......+..+. ..|+ ++++. .|.++..+...++.+|++.|++++...
T Consensus 284 I~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 352 (380)
T PRK00025 284 VVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQALLEGF 352 (380)
T ss_pred EEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 988654333322222221 1232 33332 367899999999999999999887753
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.48 E-value=5.6e-07 Score=95.73 Aligned_cols=69 Identities=22% Similarity=0.115 Sum_probs=51.8
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 145 LCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAA---HSNLASVLQQQGKLTDALLHYKEAIRI 213 (673)
Q Consensus 145 ~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~eA~~~~~~al~~ 213 (673)
.+|+++.+++++|.+|..+|+|++|+.+|+++++++|++.++ |+|+|.+|..+|++++|++++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 367777777777777777777777777777777777777643 777777777777777777777777776
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.48 E-value=7.2e-07 Score=94.91 Aligned_cols=69 Identities=23% Similarity=0.314 Sum_probs=42.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 179 VFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA---YSNMGNTLKEMQDIQGALQCYSRAIQI 247 (673)
Q Consensus 179 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~eA~~~~~~Al~l 247 (673)
.+|+++.+|+|+|.+|+.+|+|++|+..|+++++++|++.++ |+|+|.+|..+|++++|++++++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355666666666666666666666666666666666665533 666666666666666666666666654
No 230
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.47 E-value=4.4e-06 Score=77.56 Aligned_cols=90 Identities=22% Similarity=0.160 Sum_probs=76.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy17691 121 SYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ 197 (673)
Q Consensus 121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 197 (673)
..+..++..|++++|+..|++++...|+. ..+...||.++..+|++++|+..++. +.-.+..+.++..+|.++...
T Consensus 53 ~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 53 QLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHC
Confidence 34456667889999999999999988665 45788999999999999999999976 334445577889999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy17691 198 GKLTDALLHYKEAI 211 (673)
Q Consensus 198 g~~~eA~~~~~~al 211 (673)
|++++|+..|+++|
T Consensus 132 g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 132 GDYDEARAAYQKAL 145 (145)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999999875
No 231
>PHA01630 putative group 1 glycosyl transferase
Probab=98.46 E-value=1.2e-06 Score=92.98 Aligned_cols=143 Identities=8% Similarity=0.003 Sum_probs=91.4
Q ss_pred cEEEecCCc--ccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691 475 AIVYCNFNQ--LYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF 552 (673)
Q Consensus 475 ~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (673)
.++++..++ ..|..+.++++|..+.++.|+.+++++|
T Consensus 142 ~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG----------------------------------------- 180 (331)
T PHA01630 142 PCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKS----------------------------------------- 180 (331)
T ss_pred CEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEe-----------------------------------------
Confidence 344444444 5699999999999999888999999887
Q ss_pred ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecC-CCCCCcchhhhhhhcCCceeecCCCcchhhhHH
Q psy17691 553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPVVTLPGETLASRVAA 631 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~ 631 (673)
++..+..+ .|+. + +.+.++.++....|+.+|+++-| ..++.|++.+|||++|+|||+-....+..=+..
T Consensus 181 ~~~~~~~l------~~~~-~---~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~ 250 (331)
T PHA01630 181 SNMLDPRL------FGLN-G---VKTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLS 250 (331)
T ss_pred Ccccchhh------cccc-c---eeccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccC
Confidence 11111111 1331 1 24567889999999999999665 466779999999999999999765332221100
Q ss_pred H---HHH-----------h-cCCCccccCCHHHHHHHHHHhcCC---HHHHHHHH
Q psy17691 632 S---QLA-----------T-LGCPELIARTHKEYQDIAIRLGTD---RDYCEKAL 668 (673)
Q Consensus 632 ~---~l~-----------~-~gl~~~ia~~~~~yv~~a~~la~d---~~~~~~~~ 668 (673)
. ++- . -+..-++..+.++..+.++++..| .+.++.+.
T Consensus 251 ~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~ 305 (331)
T PHA01630 251 NLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLE 305 (331)
T ss_pred CCceEEeeecccccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 0 000 0 011113344778888888888887 34444443
No 232
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.46 E-value=1.5e-05 Score=78.53 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=93.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhCCCCHH-
Q psy17691 121 SYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQ-----------GYIEEATRLYLKALEVFPEFAA- 185 (673)
Q Consensus 121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~-----------g~~~eA~~~~~~al~~~p~~~~- 185 (673)
..+..++..|++++|+..+++.++..|++ +.+++.+|.++..+ +...+|+..|+..++..|++..
T Consensus 47 ~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~ 126 (203)
T PF13525_consen 47 MLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA 126 (203)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH
Confidence 45567788999999999999999999987 45888888886654 3456899999999999999731
Q ss_pred ----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHH
Q psy17691 186 ----------------AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA---DAYSNMGNTLKEMQDIQGALQ 239 (673)
Q Consensus 186 ----------------~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~eA~~ 239 (673)
--+..|..|.+.|.+..|+..++.+++..|+.. +++..++..|.++|..+.|..
T Consensus 127 ~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 127 EEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 224568889999999999999999999999975 578899999999999885543
No 233
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.45 E-value=1.6e-06 Score=92.66 Aligned_cols=107 Identities=15% Similarity=0.147 Sum_probs=78.6
Q ss_pred hhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCc---chhhhHHHH
Q psy17691 557 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET---LASRVAASQ 633 (673)
Q Consensus 557 ~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~---~~~r~~~~~ 633 (673)
.+.+++..+++ .++|.|.|.. +++...|..+|+++-+ +|++|++|||.+|+|||+.+-.. -.....+..
T Consensus 223 ~~~l~~~~~~~---~~~v~~~g~~--~~~~~~l~~ad~~v~~---sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~ 294 (350)
T cd03785 223 LEEVKKAYEEL---GVNYEVFPFI--DDMAAAYAAADLVISR---AGASTVAELAALGLPAILIPLPYAADDHQTANARA 294 (350)
T ss_pred HHHHHHHHhcc---CCCeEEeehh--hhHHHHHHhcCEEEEC---CCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHH
Confidence 35566666665 3789999987 6788888899999853 36789999999999999875322 112223455
Q ss_pred HHhcCCCccccC---CHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 634 LATLGCPELIAR---THKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 634 l~~~gl~~~ia~---~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
+...|..-++.. |.+++.+....+..|++.+++++...
T Consensus 295 l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 335 (350)
T cd03785 295 LVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAA 335 (350)
T ss_pred HHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 666676555542 79999999999999999999887653
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.45 E-value=3.4e-06 Score=84.07 Aligned_cols=103 Identities=23% Similarity=0.278 Sum_probs=71.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q psy17691 153 LNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF---ADAYSNMGN 226 (673)
Q Consensus 153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~ 226 (673)
.++.|.-++..|+|.+|...|+.-++..|+. +++++.||.+++.+|+|++|...|..+.+-.|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5666666666777777777777777776665 5667777777777777777777777777765544 566777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy17691 227 TLKEMQDIQGALQCYSRAIQINPGFADAH 255 (673)
Q Consensus 227 ~~~~~g~~~eA~~~~~~Al~l~p~~~~a~ 255 (673)
+..++|+.++|...|++.++..|+...+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 77777777777777777777777665554
No 235
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.45 E-value=2.5e-06 Score=90.26 Aligned_cols=96 Identities=11% Similarity=0.005 Sum_probs=71.4
Q ss_pred hHHHHHHHcC-CCCCeEEeccCcChHHHHHhcccccEEecCC--CCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHH
Q psy17691 559 NIQATAQALG-LDQHRILFSNVAAKEEHVRRGQLADVCLDTP--LCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLA 635 (673)
Q Consensus 559 ~~~~~~~~~g-~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~--p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~ 635 (673)
.+.....+.. + .++|.|.|.++..+....|..+|+++-|. .++.|++++|||++|+|||+-....... +-
T Consensus 211 ~~~~~~~~~~~~-~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e------~i 283 (335)
T cd03802 211 YFYREIAPELLD-GPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPE------VV 283 (335)
T ss_pred HHHHHHHHhccc-CCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCchh------he
Confidence 3444444443 4 38999999999999999999999998764 4688999999999999999876544332 11
Q ss_pred hcCCCccccCCHHHHHHHHHHhcCCH
Q psy17691 636 TLGCPELIARTHKEYQDIAIRLGTDR 661 (673)
Q Consensus 636 ~~gl~~~ia~~~~~yv~~a~~la~d~ 661 (673)
.-|...++..+.+++++....+..+.
T Consensus 284 ~~~~~g~l~~~~~~l~~~l~~l~~~~ 309 (335)
T cd03802 284 EDGVTGFLVDSVEELAAAVARADRLD 309 (335)
T ss_pred eCCCcEEEeCCHHHHHHHHHHHhccH
Confidence 22445677777899988888876544
No 236
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.44 E-value=3.3e-06 Score=90.42 Aligned_cols=112 Identities=21% Similarity=0.157 Sum_probs=104.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy17691 155 NLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDI 234 (673)
Q Consensus 155 ~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 234 (673)
.|-.++...+++++|+..+++..+.+|+ +...++.++...++..+|++.+.++++.+|.+...+...+..+.+.+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3445666789999999999999998875 5667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 235 QGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 235 ~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
+.|++..++++++.|++...|+.|+.+|...|+++
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence 99999999999999999999999999999999987
No 237
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=2.9e-06 Score=80.74 Aligned_cols=99 Identities=19% Similarity=0.136 Sum_probs=88.0
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17691 120 FSYIISVL-LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG 198 (673)
Q Consensus 120 ~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 198 (673)
++..+.++ ..|-+.-|..-|.+++.+.|+-+++++.||..+...|+|+.|.+.|...++++|.+..++.|.|..++.-|
T Consensus 68 ~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~g 147 (297)
T COG4785 68 LFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 147 (297)
T ss_pred HHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecC
Confidence 33344444 48889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCH
Q psy17691 199 KLTDALLHYKEAIRIQPSFA 218 (673)
Q Consensus 199 ~~~eA~~~~~~al~~~p~~~ 218 (673)
+++-|.+-+.+-.+.+|+++
T Consensus 148 R~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 148 RYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred chHhhHHHHHHHHhcCCCCh
Confidence 99999999988888888875
No 238
>KOG4340|consensus
Probab=98.42 E-value=2.8e-06 Score=84.34 Aligned_cols=144 Identities=20% Similarity=0.146 Sum_probs=121.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691 126 VLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALL 205 (673)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 205 (673)
+..-.+|++|++++..-.+.+|.+-..+..||.+|+...+|.+|..+|++.-++.|......+..+..+++.+.+..|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 34556889999999888888898888888999999999999999999999999999888888888888888888887776
Q ss_pred HHHHH----------HHh--------------------CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691 206 HYKEA----------IRI--------------------QP--SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253 (673)
Q Consensus 206 ~~~~a----------l~~--------------------~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~ 253 (673)
..... +++ -| ++++...+.|.+.++.|++++|.+-|+.|++...-++-
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl 179 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL 179 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence 54322 211 23 45778899999999999999999999999999998899
Q ss_pred HHHHHHHHHHHcCCCc
Q psy17691 254 AHSNLASIHKDSGKRG 269 (673)
Q Consensus 254 a~~~La~~~~~~g~~~ 269 (673)
.-++++.++...|++.
T Consensus 180 lAYniALaHy~~~qya 195 (459)
T KOG4340|consen 180 LAYNLALAHYSSRQYA 195 (459)
T ss_pred hHHHHHHHHHhhhhHH
Confidence 9999999999999886
No 239
>KOG4234|consensus
Probab=98.41 E-value=3.8e-06 Score=78.97 Aligned_cols=107 Identities=23% Similarity=0.224 Sum_probs=94.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17691 121 SYIISVLLLIQVSEAEECYNTALRLCPTH-----ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQ 195 (673)
Q Consensus 121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 195 (673)
.-+..++..|+|++|...|..||+..|.. ...+.+.|.++.+++.++.|+....++++++|.+..++...|.+|.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 34566788999999999999999999876 3478899999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227 (673)
Q Consensus 196 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 227 (673)
+..+|++|++-|++.++.+|..-++.-....+
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999999999999999876555444433
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.41 E-value=4.7e-06 Score=83.06 Aligned_cols=104 Identities=17% Similarity=0.258 Sum_probs=96.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q psy17691 119 TFSYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLAS 192 (673)
Q Consensus 119 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~ 192 (673)
.|..+..++..|+|.+|...|+.-++..|+. +++++.||.+++.+|++++|...|..+.+-.|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5777788899999999999999999999986 7899999999999999999999999999998776 789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691 193 VLQQQGKLTDALLHYKEAIRIQPSFADAYS 222 (673)
Q Consensus 193 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 222 (673)
+...+|+.++|...|+++++..|+...+-.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999999876554
No 241
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.40 E-value=3.5e-06 Score=87.49 Aligned_cols=151 Identities=18% Similarity=0.208 Sum_probs=111.4
Q ss_pred hHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C----H
Q psy17691 118 TTFSYIISVLL-LIQVSEAEECYNTALRLCPT--H----ADSLNNLANIKREQGYIEEATRLYLKALEVFPE--F----A 184 (673)
Q Consensus 118 ~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~--~----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~--~----~ 184 (673)
..+..++..++ .+++++|..+|.++.+..-+ + ...+...+.+|.+. ++++|+.+|++++.+.-. . .
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 34555555555 78999999999999887421 1 44667777777666 999999999999987422 2 5
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q psy17691 185 AAHSNLASVLQQQ-GKLTDALLHYKEAIRIQPS--F----ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF------ 251 (673)
Q Consensus 185 ~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~------ 251 (673)
.++.++|.+|... |++++|+++|++|+++... . ..++.++|.++.++|+|++|++.|++.....-++
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 6889999999999 9999999999999987321 1 4578899999999999999999999998753221
Q ss_pred -HHHHHHHHHHHHHcCCCc
Q psy17691 252 -ADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 252 -~~a~~~La~~~~~~g~~~ 269 (673)
...+...+.|+...|+..
T Consensus 195 ~~~~~l~a~l~~L~~~D~v 213 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYV 213 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHHcCCHH
Confidence 234556677888888764
No 242
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.39 E-value=1.9e-06 Score=93.60 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=108.3
Q ss_pred ccccccCCCCCcEEEecC--Ccc---cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhh
Q psy17691 464 TSRQQYGLPEDAIVYCNF--NQL---YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIV 538 (673)
Q Consensus 464 ~~r~~~~l~~~~~~~~~~--~~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (673)
..|+++|++.+..+++.+ ++. .|+.+.++++...+.+..|+.++++..
T Consensus 180 ~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~--------------------------- 232 (385)
T TIGR00215 180 SAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPV--------------------------- 232 (385)
T ss_pred HHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEe---------------------------
Confidence 357788998776554433 244 467888899988988888998876543
Q ss_pred hhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCcee
Q psy17691 539 LKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVV 618 (673)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvv 618 (673)
.++...+.+++..+..|.. .+|.+.+. +....|..+|+++-+. |++|+|++++|+|+|
T Consensus 233 -------------~~~~~~~~~~~~~~~~~~~-~~v~~~~~----~~~~~l~aADl~V~~S----Gt~tlEa~a~G~P~V 290 (385)
T TIGR00215 233 -------------VNFKRRLQFEQIKAEYGPD-LQLHLIDG----DARKAMFAADAALLAS----GTAALEAALIKTPMV 290 (385)
T ss_pred -------------CCchhHHHHHHHHHHhCCC-CcEEEECc----hHHHHHHhCCEEeecC----CHHHHHHHHcCCCEE
Confidence 1233344555655666663 56766543 2235778999998765 777789999999999
Q ss_pred ecCCCcchhhhHHHHHH---hc----------CCCcccc--CCHHHHHHHHHHhcCCH----HHHHHHHhhh
Q psy17691 619 TLPGETLASRVAASQLA---TL----------GCPELIA--RTHKEYQDIAIRLGTDR----DYCEKALLYH 671 (673)
Q Consensus 619 t~~g~~~~~r~~~~~l~---~~----------gl~~~ia--~~~~~yv~~a~~la~d~----~~~~~~~~~~ 671 (673)
....-+..+...+..+- .+ ..+|++- .|++...+...+|.+|+ +.+++++...
T Consensus 291 v~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~ 362 (385)
T TIGR00215 291 VGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFF 362 (385)
T ss_pred EEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 88665555544444321 12 2355553 36888999999999999 8888887654
No 243
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.38 E-value=2.3e-06 Score=95.80 Aligned_cols=157 Identities=17% Similarity=0.028 Sum_probs=105.7
Q ss_pred ccccccCCC--CCcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691 464 TSRQQYGLP--EDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVL 539 (673)
Q Consensus 464 ~~r~~~~l~--~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (673)
..|+++|++ ++.+++++++|+. |-.+.+++++.++.+. +.+|+++|.
T Consensus 283 ~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~--------------------------- 333 (476)
T cd03791 283 ALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLEL--GGQLVILGS--------------------------- 333 (476)
T ss_pred HHHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHHc--CcEEEEEec---------------------------
Confidence 357888986 7778888888775 8888899999988764 388888871
Q ss_pred hccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCcee
Q psy17691 540 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVV 618 (673)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvv 618 (673)
.+...++.+++...+. .++++|.+..+.+.....|..+|++|-|. -++-|.+.+|||++|+|||
T Consensus 334 ------------g~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI 398 (476)
T cd03791 334 ------------GDPEYEEALRELAARY---PGRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPI 398 (476)
T ss_pred ------------CCHHHHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCE
Confidence 0111234455544444 47888776666666677899999998765 4577899999999999999
Q ss_pred ecCCCcchhhhHHHHHHhcCC------Ccccc--CCHHHHHHHHHHhc---CCHHHHHHHHhh
Q psy17691 619 TLPGETLASRVAASQLATLGC------PELIA--RTHKEYQDIAIRLG---TDRDYCEKALLY 670 (673)
Q Consensus 619 t~~g~~~~~r~~~~~l~~~gl------~~~ia--~~~~~yv~~a~~la---~d~~~~~~~~~~ 670 (673)
+.....+.. ++.. |- ..++. .+.+++.+...++. .+++.+.+++..
T Consensus 399 ~~~~gg~~e-----~v~~-~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~ 455 (476)
T cd03791 399 VRATGGLAD-----TVID-YNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQRN 455 (476)
T ss_pred ECcCCCccc-----eEeC-CcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 765433322 0111 11 23332 36777776666544 577887777654
No 244
>KOG4648|consensus
Probab=98.38 E-value=1.2e-06 Score=88.47 Aligned_cols=108 Identities=16% Similarity=0.103 Sum_probs=99.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17691 119 TFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG 198 (673)
Q Consensus 119 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 198 (673)
.-..+..++++|.|++|+.||.+++..+|.++-.+.+.+..|+++.+|..|...++.|+.++.....+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691 199 KLTDALLHYKEAIRIQPSFADAYSNMGN 226 (673)
Q Consensus 199 ~~~eA~~~~~~al~~~p~~~~~~~~lg~ 226 (673)
+..+|.+-|+.+|++.|++.+..-.++.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~ 207 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLAR 207 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHH
Confidence 9999999999999999997665544443
No 245
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.37 E-value=3.7e-06 Score=78.47 Aligned_cols=106 Identities=21% Similarity=0.298 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691 132 VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAI 211 (673)
Q Consensus 132 ~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 211 (673)
++.|.+.++.....+|.+++.+++.|.++.++.++...-+ ...-+++|+.-|++||
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~e------------------------s~~miedAisK~eeAL 62 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPE------------------------SKKMIEDAISKFEEAL 62 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHH------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcch------------------------HHHHHHHHHHHHHHHH
Confidence 6667777777777777777777777776665533311000 0012345555666666
Q ss_pred HhCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691 212 RIQPSFADAYSNMGNTLKEMQD-----------IQGALQCYSRAIQINPGFADAHSNLASI 261 (673)
Q Consensus 212 ~~~p~~~~~~~~lg~~~~~~g~-----------~~eA~~~~~~Al~l~p~~~~a~~~La~~ 261 (673)
.++|+..++++++|++|..++. |++|..+|++|...+|++...+..|..+
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 6666666666666666655433 6778888888888888887766666443
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.36 E-value=1.1e-05 Score=73.08 Aligned_cols=104 Identities=23% Similarity=0.279 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q psy17691 151 DSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA---DAYSNM 224 (673)
Q Consensus 151 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~l 224 (673)
..++.-|.-.++.|+|++|++.|+......|.. ..+...++.+|+..+++++|+..+++-++++|+++ .+++..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 344555555555555555555555555554433 34555555555555555555555555555555543 345555
Q ss_pred HHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHH
Q psy17691 225 GNTLKEMQD---------------IQGALQCYSRAIQINPGFADA 254 (673)
Q Consensus 225 g~~~~~~g~---------------~~eA~~~~~~Al~l~p~~~~a 254 (673)
|.++.++.. ..+|...|++.++..|++..+
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 555555444 667888888888888876543
No 247
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=98.35 E-value=1.2e-06 Score=97.22 Aligned_cols=154 Identities=14% Similarity=0.054 Sum_probs=101.2
Q ss_pred cCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccC----eeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhcc
Q psy17691 469 YGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPN----SILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAV 542 (673)
Q Consensus 469 ~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (673)
.++..+..++++++|+. |..+..++++.+++++.|+ .+|++++.+..+
T Consensus 258 ~~~~~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g-------------------------- 311 (460)
T cd03788 258 RERLGGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRT-------------------------- 311 (460)
T ss_pred HHhcCCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCc--------------------------
Confidence 45566777888888775 8899999999999999997 467766622111
Q ss_pred CchhhhhccCChhhhhhHHHHHH----Hc----CCC-CCeEE-eccCcChHHHHHhcccccEEecC-CCCCCcchhhhhh
Q psy17691 543 PNSILWLLKFPAVGEANIQATAQ----AL----GLD-QHRIL-FSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVL 611 (673)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~----~~----g~~-~~rv~-~~~~~~~~~~~~~~~~~Di~Ld~-~p~~g~~t~~eal 611 (673)
.++....+++.+. +. |.. -..|+ |.|.++.++..++|+.+||++-| .-++-|.|.+|||
T Consensus 312 ----------~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAm 381 (460)
T cd03788 312 ----------DVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYV 381 (460)
T ss_pred ----------CcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeE
Confidence 1222233333333 22 311 12354 45788999999999999999775 4667799999999
Q ss_pred hcCCc----eeecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCH-HHHHHH
Q psy17691 612 WTGTP----VVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR-DYCEKA 667 (673)
Q Consensus 612 ~~GvP----vvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~-~~~~~~ 667 (673)
++|+| ||+-... |.+-. |-+.++. .|.+++.+...++.+++ +.++.+
T Consensus 382 a~g~p~~g~vV~S~~~------G~~~~---~~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~ 435 (460)
T cd03788 382 ACQDDDPGVLILSEFA------GAAEE---LSGALLVNPYDIDEVADAIHRALTMPLEERRER 435 (460)
T ss_pred EEecCCCceEEEeccc------cchhh---cCCCEEECCCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999 4442210 11111 3445554 48899999888888755 454444
No 248
>KOG3785|consensus
Probab=98.35 E-value=1.1e-05 Score=81.83 Aligned_cols=145 Identities=18% Similarity=0.053 Sum_probs=110.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------hCC----
Q psy17691 120 FSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALE--------------VFP---- 181 (673)
Q Consensus 120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~--------------~~p---- 181 (673)
...+.+++.+|+|++|+..|+-+.+.+.-+.+.+.+||.+++-+|.|.+|.....++-+ ++.
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence 35566778899999999999998887777788999999999999999999887666521 111
Q ss_pred --------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691 182 --------EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253 (673)
Q Consensus 182 --------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~ 253 (673)
+..+-...|+.+.+..-.|++|++.|++.+.-+|+....-.+++.||.++.-++-+.+.+.--++..|+..-
T Consensus 141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti 220 (557)
T KOG3785|consen 141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI 220 (557)
T ss_pred HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence 112334556666677778888888888888888887777788888888888888888888888888888877
Q ss_pred HHHHHHHHHHH
Q psy17691 254 AHSNLASIHKD 264 (673)
Q Consensus 254 a~~~La~~~~~ 264 (673)
+..-++..+.+
T Consensus 221 A~NLkacn~fR 231 (557)
T KOG3785|consen 221 AKNLKACNLFR 231 (557)
T ss_pred HHHHHHHHHhh
Confidence 76665555443
No 249
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.34 E-value=6.1e-07 Score=73.62 Aligned_cols=64 Identities=34% Similarity=0.575 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQ-------PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI 247 (673)
Q Consensus 184 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l 247 (673)
..++.++|.+|..+|++++|+.+|++++++. |..+.++.++|.++..+|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455666666666666666666666666541 112345667777777777777777777776654
No 250
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=98.32 E-value=4.2e-06 Score=89.40 Aligned_cols=106 Identities=20% Similarity=0.251 Sum_probs=76.5
Q ss_pred hhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcch--hhhHHHHHH
Q psy17691 558 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLA--SRVAASQLA 635 (673)
Q Consensus 558 ~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~--~r~~~~~l~ 635 (673)
+.+++..++.|+ .+++.|.. .++...|..+|+++-+ +|++|++|||++|+|||+.+-+... .+....++.
T Consensus 222 ~~l~~~~~~~~l-~~~v~~~~----~~~~~~l~~ad~~v~~---~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~ 293 (348)
T TIGR01133 222 EKVKNVYQELGI-EAIVTFID----ENMAAAYAAADLVISR---AGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLE 293 (348)
T ss_pred HHHHHHHhhCCc-eEEecCcc----cCHHHHHHhCCEEEEC---CChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHH
Confidence 567787888887 36666762 2667778899999853 4678999999999999987533222 233345676
Q ss_pred hcCCCcccc-C--CHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 636 TLGCPELIA-R--THKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 636 ~~gl~~~ia-~--~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
..|..-++- . +.+++.+...++..|++.+++++...
T Consensus 294 ~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 332 (348)
T TIGR01133 294 DLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAA 332 (348)
T ss_pred HCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 655544442 2 48999999999999999999887654
No 251
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.31 E-value=0.00022 Score=68.83 Aligned_cols=126 Identities=33% Similarity=0.421 Sum_probs=100.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCH
Q psy17691 125 SVLLLIQVSEAEECYNTALRLCP---THADSLNNLANIKREQGYIEEATRLYLKALEVFPE-FAAAHSNLASVLQQQGKL 200 (673)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~ 200 (673)
.+...|++++|...+++++...| .........+..+...+++++|+..+.+++...+. ....+..++..+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 56678888888888888877666 35566666677777788888888888888888888 688888888888888888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691 201 TDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250 (673)
Q Consensus 201 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~ 250 (673)
++|+..+.+++...|.....+..++..+...+.++++...+.++++..|.
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888888888888876677777777777777788888888888888776
No 252
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=98.30 E-value=5.9e-06 Score=88.79 Aligned_cols=106 Identities=16% Similarity=0.190 Sum_probs=77.4
Q ss_pred hhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCc---chhhhHHHHH
Q psy17691 558 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET---LASRVAASQL 634 (673)
Q Consensus 558 ~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~---~~~r~~~~~l 634 (673)
+.+.+..+ +|+. |.|.|.. +++...|..+|+++-+ +|++|++|||++|+|||+.+... -.....+..+
T Consensus 225 ~~~~~~~~-~~~~---v~~~g~~--~~~~~~~~~~d~~i~~---~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i 295 (357)
T PRK00726 225 EEVRAAYA-AGIN---AEVVPFI--DDMAAAYAAADLVICR---AGASTVAELAAAGLPAILVPLPHAADDHQTANARAL 295 (357)
T ss_pred HHHHHHhh-cCCc---EEEeehH--hhHHHHHHhCCEEEEC---CCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHH
Confidence 44555555 7773 9999987 5777888899999853 36789999999999999986431 1122234556
Q ss_pred HhcCCCcccc-CC--HHHHHHHHHHhcCCHHHHHHHHhhhc
Q psy17691 635 ATLGCPELIA-RT--HKEYQDIAIRLGTDRDYCEKALLYHE 672 (673)
Q Consensus 635 ~~~gl~~~ia-~~--~~~yv~~a~~la~d~~~~~~~~~~~~ 672 (673)
...|..-++. .+ ++++.+...++..|++.++++++...
T Consensus 296 ~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 336 (357)
T PRK00726 296 VDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAAR 336 (357)
T ss_pred HHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 6667654443 23 89999999999999999999887543
No 253
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.30 E-value=3.2e-06 Score=90.97 Aligned_cols=151 Identities=12% Similarity=0.093 Sum_probs=105.8
Q ss_pred ccccCCCCCcEEEecCCcc-----cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhh
Q psy17691 466 RQQYGLPEDAIVYCNFNQL-----YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLK 540 (673)
Q Consensus 466 r~~~~l~~~~~~~~~~~~~-----~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (673)
|+.+|++++.++++++++. .|..+.+++++.++... +.++++.+
T Consensus 190 ~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~--~~~vi~~~----------------------------- 238 (363)
T cd03786 190 LELLGLLPKKYILVTLHRVENVDDGEQLEEILEALAELAEE--DVPVVFPN----------------------------- 238 (363)
T ss_pred hhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHHHHHhc--CCEEEEEC-----------------------------
Confidence 3467887777666666654 46677788888776543 44444433
Q ss_pred ccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeec
Q psy17691 541 AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 620 (673)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~ 620 (673)
++...+.+++...+.|...++|.|.+.....++..+|..+|+++-+. | +.+.||+++|+|||+.
T Consensus 239 ------------~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~S---g-gi~~Ea~~~g~PvI~~ 302 (363)
T cd03786 239 ------------HPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDS---G-GIQEEASFLGVPVLNL 302 (363)
T ss_pred ------------CCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcC---c-cHHhhhhhcCCCEEee
Confidence 23345677887788887447899999888888888899999996443 3 3579999999999997
Q ss_pred CCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHH
Q psy17691 621 PGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKAL 668 (673)
Q Consensus 621 ~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~ 668 (673)
...+ ....+...|..-++..+.++.++....+..|+..+..++
T Consensus 303 ~~~~-----~~~~~~~~g~~~~~~~~~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 303 RDRT-----ERPETVESGTNVLVGTDPEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred CCCC-----ccchhhheeeEEecCCCHHHHHHHHHHHhcCchhhhcCC
Confidence 6421 111233456655555578999998889999998887764
No 254
>KOG4555|consensus
Probab=98.29 E-value=3.2e-05 Score=67.86 Aligned_cols=94 Identities=26% Similarity=0.268 Sum_probs=61.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc
Q psy17691 156 LANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF----ADAYSNMGNTLKEM 231 (673)
Q Consensus 156 Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~lg~~~~~~ 231 (673)
-|..+.+.|+.+.|++.|.+++.+.|..+.+|+|.+..+.-+|+.++|++-+++++++.... ..++...|.+|..+
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 35555566666666666666666666666666666666666666666666666666664332 24566677777777
Q ss_pred CCHHHHHHHHHHHHHhCC
Q psy17691 232 QDIQGALQCYSRAIQINP 249 (673)
Q Consensus 232 g~~~eA~~~~~~Al~l~p 249 (673)
|+-+.|...|+.|-++..
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 777777777777666543
No 255
>KOG3081|consensus
Probab=98.28 E-value=0.00024 Score=70.16 Aligned_cols=138 Identities=14% Similarity=0.084 Sum_probs=115.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCC
Q psy17691 124 ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ----QGK 199 (673)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~ 199 (673)
..+...+++++|+....+. .+.++...--.++.++.+++-|.+.+++..+++.+.. +..||..+.+ .++
T Consensus 116 ~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t--LtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT--LTQLAQAWVKLATGGEK 188 (299)
T ss_pred HHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH--HHHHHHHHHHHhccchh
Confidence 4455688999999887773 4566666777889999999999999999999877643 3334444432 356
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691 200 LTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR 268 (673)
Q Consensus 200 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~ 268 (673)
+.+|.-+|++.-+..|..+...+..+.|+..+|++++|...++.+|..++++++.+.|+..+-...|+-
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 899999999998877888999999999999999999999999999999999999999999988888875
No 256
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.27 E-value=4.1e-06 Score=90.69 Aligned_cols=130 Identities=17% Similarity=0.065 Sum_probs=87.5
Q ss_pred CcEEEecCCccc-ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691 474 DAIVYCNFNQLY-KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF 552 (673)
Q Consensus 474 ~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (673)
+.+++|.++++. |.. +++...+.+..|+..|+|+|.
T Consensus 204 ~~~~i~y~G~l~~~~d---~~ll~~la~~~p~~~~vliG~---------------------------------------- 240 (373)
T cd04950 204 PRPVIGYYGAIAEWLD---LELLEALAKARPDWSFVLIGP---------------------------------------- 240 (373)
T ss_pred CCCEEEEEeccccccC---HHHHHHHHHHCCCCEEEEECC----------------------------------------
Confidence 455666667666 444 455566777889999999981
Q ss_pred ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCC------CCcchhhhhhhcCCceeecCCCcch
Q psy17691 553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC------NGHTTSMDVLWTGTPVVTLPGETLA 626 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~------~g~~t~~eal~~GvPvvt~~g~~~~ 626 (673)
+....... .... .++|.|+|..++++....++.+||++-||-. +-++.++|+|++|+|||+...+
T Consensus 241 -~~~~~~~~---~~~~--~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~--- 311 (373)
T cd04950 241 -VDVSIDPS---ALLR--LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLP--- 311 (373)
T ss_pred -CcCccChh---Hhcc--CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcH---
Confidence 10000011 1111 3789999999999999999999999988742 2367899999999999986432
Q ss_pred hhhHHHHHHhcCCCccccCCHHHHHHHHHHh-cCC
Q psy17691 627 SRVAASQLATLGCPELIARTHKEYQDIAIRL-GTD 660 (673)
Q Consensus 627 ~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~l-a~d 660 (673)
.+....+-.-+++.|.+++++...+. ..+
T Consensus 312 -----~~~~~~~~~~~~~~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 312 -----EVRRYEDEVVLIADDPEEFVAAIEKALLED 341 (373)
T ss_pred -----HHHhhcCcEEEeCCCHHHHHHHHHHHHhcC
Confidence 22222232224566899999999884 444
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.27 E-value=2.6e-05 Score=70.69 Aligned_cols=104 Identities=18% Similarity=0.112 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q psy17691 117 GTTFSYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNL 190 (673)
Q Consensus 117 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l 190 (673)
...+..+...+..|+|++|++.|+.+....|.. ..+...|+.+|++.+++++|+..+++-++++|.+ ..+++..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 345566778889999999999999999998764 6789999999999999999999999999999988 4678999
Q ss_pred HHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHH
Q psy17691 191 ASVLQQQGK---------------LTDALLHYKEAIRIQPSFADA 220 (673)
Q Consensus 191 a~~~~~~g~---------------~~eA~~~~~~al~~~p~~~~~ 220 (673)
|.+++.+.. ..+|...|++.++..|++..+
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 999988876 889999999999999997643
No 258
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.27 E-value=9.8e-06 Score=87.41 Aligned_cols=151 Identities=14% Similarity=0.149 Sum_probs=103.3
Q ss_pred cccccCCCCCcEEEecCCcc---cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhc
Q psy17691 465 SRQQYGLPEDAIVYCNFNQL---YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKA 541 (673)
Q Consensus 465 ~r~~~~l~~~~~~~~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (673)
.++++|. .+.++++++++. .|..+.+++++.++.++.|+.++++.+.+
T Consensus 189 ~~~~~~~-~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~---------------------------- 239 (365)
T TIGR00236 189 VLSEFGE-DKRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHL---------------------------- 239 (365)
T ss_pred HHHhcCC-CCCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCC----------------------------
Confidence 3455663 334566666543 36678889999999888898888775411
Q ss_pred cCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecC
Q psy17691 542 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 621 (673)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~ 621 (673)
+......+. +..|. .++|.|.+.++..+++..+..+|+++-+. |+ .++||+++|+|||+..
T Consensus 240 -----------~~~~~~~~~---~~~~~-~~~v~~~~~~~~~~~~~~l~~ad~vv~~S---g~-~~~EA~a~g~PvI~~~ 300 (365)
T TIGR00236 240 -----------NPVVREPLH---KHLGD-SKRVHLIEPLEYLDFLNLAANSHLILTDS---GG-VQEEAPSLGKPVLVLR 300 (365)
T ss_pred -----------ChHHHHHHH---HHhCC-CCCEEEECCCChHHHHHHHHhCCEEEECC---hh-HHHHHHHcCCCEEECC
Confidence 111112222 23455 36899999999999999999999996432 43 4799999999999974
Q ss_pred --CCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691 622 --GETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLY 670 (673)
Q Consensus 622 --g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~ 670 (673)
|...- +. ..|..-++..+.++..+...++..|++.+++++..
T Consensus 301 ~~~~~~e------~~-~~g~~~lv~~d~~~i~~ai~~ll~~~~~~~~~~~~ 344 (365)
T TIGR00236 301 DTTERPE------TV-EAGTNKLVGTDKENITKAAKRLLTDPDEYKKMSNA 344 (365)
T ss_pred CCCCChH------HH-hcCceEEeCCCHHHHHHHHHHHHhChHHHHHhhhc
Confidence 32211 12 23444455568999999888999999999888653
No 259
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.26 E-value=8.1e-05 Score=69.48 Aligned_cols=140 Identities=22% Similarity=0.221 Sum_probs=121.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17691 128 LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALE-VFPEFAAAHSNLASVLQQQGKLTDALLH 206 (673)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~eA~~~ 206 (673)
+.=+.+.+..-..+.++..|.. .-.+.||+.+.+.|++.||...|++++. +.-+++..+..+++..+..+++.+|...
T Consensus 68 q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 68 QKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred HhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence 3446777777777777777764 4577899999999999999999999986 4678899999999999999999999999
Q ss_pred HHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 207 YKEAIRIQPS--FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 207 ~~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
+++..+.+|. .++.+..+|.+|..+|++.+|...|+.++...|+ +.+...++..+.++|+..
T Consensus 147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ 210 (251)
T COG4700 147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLR 210 (251)
T ss_pred HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchh
Confidence 9999999886 4678889999999999999999999999999987 677788889999999753
No 260
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.26 E-value=9e-06 Score=75.92 Aligned_cols=56 Identities=25% Similarity=0.347 Sum_probs=36.0
Q ss_pred HHhcCCCChhHHH-HHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691 109 CYALSPDDGTTFS-YIISVLLL----------IQVSEAEECYNTALRLCPTHADSLNNLANIKREQG 164 (673)
Q Consensus 109 ~~~l~p~~~~~~~-~~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g 164 (673)
....+|.+.+.+. .++.++.+ .-+++|+.-|++|+.++|+..++++++|++|..++
T Consensus 17 ~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 17 AYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 4567999988774 44454432 24567777778888888888888888888877654
No 261
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.25 E-value=0.00053 Score=66.17 Aligned_cols=155 Identities=31% Similarity=0.376 Sum_probs=129.5
Q ss_pred CCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCC---CCHHHHH
Q psy17691 114 PDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLAN-IKREQGYIEEATRLYLKALEVFP---EFAAAHS 188 (673)
Q Consensus 114 p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~-~~~~~g~~~eA~~~~~~al~~~p---~~~~~~~ 188 (673)
+.....+... ......+++.+++..+.+++...+.........+. ++...|++++|...+++++...| .......
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (291)
T COG0457 92 PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALL 171 (291)
T ss_pred cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 3344444333 44455788999999999999988887666666666 89999999999999999999777 4567777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691 189 NLASVLQQQGKLTDALLHYKEAIRIQPS-FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267 (673)
Q Consensus 189 ~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~ 267 (673)
..+..+...+++++|+..+.+++...+. ....+..++..+...+++++|+..+.+++...|.....+..++..+...+.
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGR 251 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC
Confidence 7888888999999999999999999999 799999999999999999999999999999999977777777777775553
Q ss_pred C
Q psy17691 268 R 268 (673)
Q Consensus 268 ~ 268 (673)
.
T Consensus 252 ~ 252 (291)
T COG0457 252 Y 252 (291)
T ss_pred H
Confidence 3
No 262
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.24 E-value=1.3e-06 Score=71.66 Aligned_cols=67 Identities=36% Similarity=0.501 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVF---P----EFAAAHSNLASVLQQQGKLTDALLHYKEAIRI 213 (673)
Q Consensus 147 p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~---p----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 213 (673)
|+-..++.++|.+|..+|++++|+.+|++++++. + ....++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3446788999999999999999999999999762 1 22568899999999999999999999999876
No 263
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.21 E-value=0.00011 Score=89.10 Aligned_cols=143 Identities=14% Similarity=0.122 Sum_probs=69.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHH----HHHHH
Q psy17691 126 VLLLIQVSEAEECYNTALRLCPT-----HADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHS----NLASV 193 (673)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~----~la~~ 193 (673)
++..|++++|...+++++..... ...++..+|.++...|++++|...++++..+.... ..... .....
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 34456666666666655554221 13334445555556666666666665555442211 00000 01122
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHH
Q psy17691 194 LQQQGKLTDALLHYKEAIRIQPSFA----DAYSNMGNTLKEMQDIQGALQCYSRAIQINP------GFADAHSNLASIHK 263 (673)
Q Consensus 194 ~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p------~~~~a~~~La~~~~ 263 (673)
+...|+.++|...+.+.....+... ..+..+|.++...|++++|...+++++.... ....++..+|.++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 3335555555555544333211111 1134566666666777777776666665421 12234555666666
Q ss_pred HcCCC
Q psy17691 264 DSGKR 268 (673)
Q Consensus 264 ~~g~~ 268 (673)
..|+.
T Consensus 743 ~~G~~ 747 (903)
T PRK04841 743 QQGRK 747 (903)
T ss_pred HcCCH
Confidence 66654
No 264
>KOG1586|consensus
Probab=98.20 E-value=0.00026 Score=68.54 Aligned_cols=140 Identities=18% Similarity=0.208 Sum_probs=108.7
Q ss_pred ChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC-----
Q psy17691 116 DGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHA------DSLNNLANIKREQ-GYIEEATRLYLKALEVFPEF----- 183 (673)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~Lg~~~~~~-g~~~eA~~~~~~al~~~p~~----- 183 (673)
.+..|.-+..+++..+.++|+.++++++++..+-. ..+..+|.+|... .++++|+.+|+++-+.....
T Consensus 73 aat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 73 AATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 35566777888888899999999999999976543 3455889998876 89999999999998775443
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy17691 184 -AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA-------DAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH 255 (673)
Q Consensus 184 -~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~ 255 (673)
...+...+..-...++|.+|+..|++.....-++. +.+..-|.|+.-..+.-.+...+++-.+++|...+..
T Consensus 153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 34455566777788999999999999888766653 2445667777777888888888888888999876543
No 265
>KOG4555|consensus
Probab=98.15 E-value=6.9e-05 Score=65.82 Aligned_cols=95 Identities=27% Similarity=0.244 Sum_probs=85.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcC
Q psy17691 123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF----AAAHSNLASVLQQQG 198 (673)
Q Consensus 123 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g 198 (673)
+..+...|+.+.|++.|.+++.+.|+.+.+|++.+..+.-+|+.++|++.+++++++.-.. ..++...|.+|..+|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3445568999999999999999999999999999999999999999999999999996554 457888999999999
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q psy17691 199 KLTDALLHYKEAIRIQPSF 217 (673)
Q Consensus 199 ~~~eA~~~~~~al~~~p~~ 217 (673)
+-+.|..-|+.+-++....
T Consensus 130 ~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKF 148 (175)
T ss_pred chHHHHHhHHHHHHhCCHH
Confidence 9999999999988876554
No 266
>KOG1915|consensus
Probab=98.13 E-value=0.0002 Score=75.52 Aligned_cols=130 Identities=18% Similarity=0.197 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17691 129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK 208 (673)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 208 (673)
+.+...|.+.+-.|+-..|.+ ..+...-.+-.++++++.....|++-++..|.+..+|...|.+-..+|+.+.|...|+
T Consensus 417 q~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaife 495 (677)
T KOG1915|consen 417 QLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFE 495 (677)
T ss_pred HcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 445555555555555555543 2333333444455555555555555555555555555555555555555555555555
Q ss_pred HHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691 209 EAIRIQPSFAD--AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLAS 260 (673)
Q Consensus 209 ~al~~~p~~~~--~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~ 260 (673)
-|+....-+.. .|-..-..-...|.+++|...|++.|+..+... .|...|.
T Consensus 496 lAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~ 548 (677)
T KOG1915|consen 496 LAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAK 548 (677)
T ss_pred HHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHH
Confidence 55554322211 222333333445555555555555555544433 4444444
No 267
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.10 E-value=0.00066 Score=67.33 Aligned_cols=151 Identities=13% Similarity=0.074 Sum_probs=124.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHH
Q psy17691 119 TFSYIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA---AAHSNLAS 192 (673)
Q Consensus 119 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~la~ 192 (673)
.+..+...+..|++++|+..|+.+...+|.. ..+...++.++++.+++++|+...++-+++.|.++ .+++..|.
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 3456677788999999999999999998765 56899999999999999999999999999999874 46777777
Q ss_pred HHHHc--------CCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 193 VLQQQ--------GKLTDALLHYKEAIRIQPSFAD-----------------AYSNMGNTLKEMQDIQGALQCYSRAIQI 247 (673)
Q Consensus 193 ~~~~~--------g~~~eA~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~eA~~~~~~Al~l 247 (673)
+++.. .-..+|+..+++.++..|++.- .-..+|..|.+.|.+..|+..++.+++-
T Consensus 117 s~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 117 SYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 76543 2356788899999999998631 2346788999999999999999999998
Q ss_pred CCCC---HHHHHHHHHHHHHcCCCc
Q psy17691 248 NPGF---ADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 248 ~p~~---~~a~~~La~~~~~~g~~~ 269 (673)
-|+. .+++..+..+|..+|-.+
T Consensus 197 y~~t~~~~eaL~~l~eaY~~lgl~~ 221 (254)
T COG4105 197 YPDTSAVREALARLEEAYYALGLTD 221 (254)
T ss_pred cccccchHHHHHHHHHHHHHhCChH
Confidence 7665 456777788888888766
No 268
>KOG1915|consensus
Probab=98.09 E-value=0.00067 Score=71.75 Aligned_cols=159 Identities=17% Similarity=0.178 Sum_probs=128.8
Q ss_pred HhcCCCChhHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHH-HHHcCCHHHHHHHHHHHHh
Q psy17691 110 YALSPDDGTTFSYIISVL-LLIQVSEAEECYNTALRLCPTHAD---------SLNNLANI-KREQGYIEEATRLYLKALE 178 (673)
Q Consensus 110 ~~l~p~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~---------a~~~Lg~~-~~~~g~~~eA~~~~~~al~ 178 (673)
...+|.+-++|.....+. ..|+.+.-.+.|++|+..-|...+ .|.+.+.. -....+.+.+.+.|+.+++
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 356788888886554444 478999999999999998776432 33333322 2356889999999999999
Q ss_pred hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy17691 179 VFPEF----AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADA 254 (673)
Q Consensus 179 ~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a 254 (673)
+-|.. +..|...|....++.+...|.+.+-.|+-..|.+ ...-..-.+-.++++++.....|++-|+..|.+..+
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~ 473 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA 473 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence 98864 7889999999999999999999999999999985 444555566778899999999999999999999999
Q ss_pred HHHHHHHHHHcCCCc
Q psy17691 255 HSNLASIHKDSGKRG 269 (673)
Q Consensus 255 ~~~La~~~~~~g~~~ 269 (673)
|...|.+-..+|+.+
T Consensus 474 W~kyaElE~~Lgdtd 488 (677)
T KOG1915|consen 474 WSKYAELETSLGDTD 488 (677)
T ss_pred HHHHHHHHHHhhhHH
Confidence 999999999998865
No 269
>KOG2796|consensus
Probab=98.06 E-value=7.9e-05 Score=73.12 Aligned_cols=141 Identities=19% Similarity=0.219 Sum_probs=118.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----C--CCCHHHHHHHHHH
Q psy17691 121 SYIISVLLLIQVSEAEECYNTALRLC-PTHADSLNNLANIKREQGYIEEATRLYLKALEV----F--PEFAAAHSNLASV 193 (673)
Q Consensus 121 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~----~--p~~~~~~~~la~~ 193 (673)
.++++++..|+|.-.+..+.+.++.+ |..+.....||.+..+.|+.+.|..+|++.-+. + .....+..+.+.+
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 33455556889999999999999998 667888999999999999999999999955433 2 2345677888999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHH
Q psy17691 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA---DAHSNLASI 261 (673)
Q Consensus 194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~---~a~~~La~~ 261 (673)
+.-++++.+|...|.+++..+|.++.+.++.|.|+...|+..+|++..+.+++..|... ....||-.+
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tm 332 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTM 332 (366)
T ss_pred eecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999753 334455443
No 270
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=98.03 E-value=5.4e-05 Score=83.71 Aligned_cols=153 Identities=19% Similarity=0.181 Sum_probs=98.9
Q ss_pred cccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccCe----eEEeeccCCcCCCCCCCCcccccCCCCccchhh
Q psy17691 465 SRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNS----ILWLLKFPAVGEANISRPLFRPRLRPSASTSIV 538 (673)
Q Consensus 465 ~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (673)
.|+.++ +..++++++|+. |..+..++++.++++..|+. +|++++.|..+
T Consensus 252 lr~~~~---~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg---------------------- 306 (456)
T TIGR02400 252 LRESLK---GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRG---------------------- 306 (456)
T ss_pred HHHHcC---CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCcc----------------------
Confidence 455553 567788888776 88999999999999999974 46666522111
Q ss_pred hhccCchhhhhccCChhhhhhHHHHHHHc--------CC-C-CCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchh
Q psy17691 539 LKAVPNSILWLLKFPAVGEANIQATAQAL--------GL-D-QHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTS 607 (673)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~-~-~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~ 607 (673)
.+...+.+++.+++. |- + ..-+.|.+..+.++..++|+.+||++-|. -.+=|.|.
T Consensus 307 --------------~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~ 372 (456)
T TIGR02400 307 --------------DVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVA 372 (456)
T ss_pred --------------CchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccH
Confidence 123344555555443 21 1 11234456788999999999999997765 55669999
Q ss_pred hhhhhcCCc----eeecC-CCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcC-CHHHHHH
Q psy17691 608 MDVLWTGTP----VVTLP-GETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGT-DRDYCEK 666 (673)
Q Consensus 608 ~eal~~GvP----vvt~~-g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~-d~~~~~~ 666 (673)
+|||++|+| ||.-. +.. . ..+ + ..++. .|.++..+...++.+ +++.+.+
T Consensus 373 lEamA~g~P~~g~vVlS~~~G~-~-----~~l---~-~gllVnP~d~~~lA~aI~~aL~~~~~er~~ 429 (456)
T TIGR02400 373 KEYVAAQDPKDGVLILSEFAGA-A-----QEL---N-GALLVNPYDIDGMADAIARALTMPLEEREE 429 (456)
T ss_pred HHHHHhcCCCCceEEEeCCCCC-h-----HHh---C-CcEEECCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999 55432 211 1 112 2 34443 477888777767665 4455443
No 271
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.01 E-value=1.7e-05 Score=75.58 Aligned_cols=105 Identities=19% Similarity=0.159 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17691 149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL 228 (673)
Q Consensus 149 ~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 228 (673)
.+..++..|..|-..|-+.-|.-.|.+++.+.|+.+.+++.||..+...|+++.|.+.|...++++|.+-.++.|.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 35577788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691 229 KEMQDIQGALQCYSRAIQINPGFAD 253 (673)
Q Consensus 229 ~~~g~~~eA~~~~~~Al~l~p~~~~ 253 (673)
..-|++.-|.+.+.+-.+.+|+++-
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChH
Confidence 9999999999999999999999874
No 272
>KOG4642|consensus
Probab=98.00 E-value=1.4e-05 Score=77.37 Aligned_cols=91 Identities=18% Similarity=0.187 Sum_probs=56.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy17691 157 ANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQG 236 (673)
Q Consensus 157 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 236 (673)
|+.|+...+|..|+.+|.+++.++|..+..|.|.+.++++.++++.+....++++++.|+....++.+|.++.+...+++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 44444455566666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHh
Q psy17691 237 ALQCYSRAIQI 247 (673)
Q Consensus 237 A~~~~~~Al~l 247 (673)
|+..+++|..+
T Consensus 97 aI~~Lqra~sl 107 (284)
T KOG4642|consen 97 AIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHH
Confidence 66666666443
No 273
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.99 E-value=3.4e-05 Score=76.07 Aligned_cols=107 Identities=14% Similarity=0.015 Sum_probs=78.8
Q ss_pred EEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhh
Q psy17691 477 VYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVG 556 (673)
Q Consensus 477 ~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (673)
.+|.++ ..|..+..++++.++.++.|+.++++++. +..
T Consensus 109 ~~g~~~-~~k~~~~~~~a~~~l~~~~~~~~~~i~G~-----------------------------------------~~~ 146 (229)
T cd01635 109 FVGRLA-PEKGLDDLIEAFALLKERGPDLKLVIAGD-----------------------------------------GPE 146 (229)
T ss_pred EEEeec-ccCCHHHHHHHHHHHHHhCCCeEEEEEeC-----------------------------------------CCC
Confidence 555544 34899999999999999999999999881 112
Q ss_pred hhhHHHHHHHcCCCCCeEEeccCcCh-HHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcch
Q psy17691 557 EANIQATAQALGLDQHRILFSNVAAK-EEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLA 626 (673)
Q Consensus 557 ~~~~~~~~~~~g~~~~rv~~~~~~~~-~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~ 626 (673)
...........+. .++|.+.|..+. ++.-..++.+||++-|. ..+-|++.+|||+||+|||+-....+.
T Consensus 147 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 147 REYLEELLAALLL-LDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred hHHHHHHHHhcCC-cccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 2223332455666 489999998755 44555555699998865 567799999999999999997775443
No 274
>KOG1070|consensus
Probab=97.98 E-value=0.00022 Score=83.77 Aligned_cols=127 Identities=17% Similarity=0.133 Sum_probs=94.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCC
Q psy17691 122 YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE--FAAAHSNLASVLQQQGK 199 (673)
Q Consensus 122 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~ 199 (673)
+.+.|...+++++|.++|+..++...+...+|..+|..++++++-++|...+++|++--|. +.+.....|.+-++.|+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 3445555667777777777777777777777777777777777777777777777777776 66677777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691 200 LTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248 (673)
Q Consensus 200 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~ 248 (673)
.+.+...|+-.+.-+|.-.+.|.-+...-.+.|+.+.+...|++++.+.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 7777777777777777777777777777777777777777777777653
No 275
>KOG2376|consensus
Probab=97.95 E-value=0.00016 Score=78.40 Aligned_cols=126 Identities=16% Similarity=0.061 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy17691 118 TTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ 197 (673)
Q Consensus 118 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 197 (673)
.+|..+..+...++|++|.....+.+...|++..+....-.++.+.++|++|+...++-....-.+. ..+..+.|.+++
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHc
Confidence 3444455555677888888888888888888888877777778888888887754444332222221 125677778888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 198 GKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI 247 (673)
Q Consensus 198 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l 247 (673)
++.++|+..++ -.++.+..+....|++++++|+|++|...|+..++-
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 88888888777 345555567777788888888888888888777554
No 276
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.94 E-value=0.00059 Score=82.78 Aligned_cols=127 Identities=14% Similarity=0.081 Sum_probs=102.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CHHHHH
Q psy17691 123 IISVLLLIQVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEVFPE--------FAAAHS 188 (673)
Q Consensus 123 ~~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~--------~~~~~~ 188 (673)
+..+...|++++|...+++++...... ..++..+|.++..+|++++|...++++++.... ....+.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 344566999999999999999874322 346678899999999999999999999886322 234466
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691 189 NLASVLQQQGKLTDALLHYKEAIRIQPS-----FADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249 (673)
Q Consensus 189 ~la~~~~~~g~~~eA~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p 249 (673)
.+|.++...|++++|...+++++..... ....+..+|.++...|++++|...++++..+..
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999886332 245677799999999999999999999987643
No 277
>KOG0545|consensus
Probab=97.90 E-value=0.00011 Score=71.34 Aligned_cols=106 Identities=19% Similarity=0.234 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691 150 ADSLNNLANIKREQGYIEEATRLYLKALEV--------FPE----------FAAAHSNLASVLQQQGKLTDALLHYKEAI 211 (673)
Q Consensus 150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~--------~p~----------~~~~~~~la~~~~~~g~~~eA~~~~~~al 211 (673)
..++..-|+-++.+|+|.||...|+.|+.. .|. ....+.|++.++...|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777532 233 34578899999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy17691 212 RIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH 255 (673)
Q Consensus 212 ~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~ 255 (673)
..+|.+..+++..|.+....=+.++|.+.|.++|+++|.-..+-
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 99999999999999999998899999999999999998765543
No 278
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.85 E-value=3.4e-05 Score=55.60 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691 219 DAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLAS 260 (673)
Q Consensus 219 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~ 260 (673)
.++..+|.+|..+|++++|++.|+++++.+|+++.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345566666666666666666666666666666666665553
No 279
>KOG3081|consensus
Probab=97.85 E-value=0.0034 Score=62.25 Aligned_cols=128 Identities=15% Similarity=0.069 Sum_probs=100.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy17691 124 ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKRE----QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGK 199 (673)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 199 (673)
..+.++.+.+-|.+.+++..+++.+ ..+..||..+.. .+++.+|.-+|++.-+..|..+...+..+.++..+|+
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence 4456677899999999998887654 345555555543 3568889999999988888888999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHH
Q psy17691 200 LTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC-YSRAIQINPGFAD 253 (673)
Q Consensus 200 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~-~~~Al~l~p~~~~ 253 (673)
|++|...++.++..++++++.+.|+-.+-..+|+-.++.+- ..+....+|.++-
T Consensus 223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 99999999999999999999999999998888888776654 4444455666543
No 280
>KOG1941|consensus
Probab=97.84 E-value=0.00038 Score=71.27 Aligned_cols=127 Identities=21% Similarity=0.225 Sum_probs=104.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------HH
Q psy17691 122 YIISVLLLIQVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF----------AA 185 (673)
Q Consensus 122 ~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~----------~~ 185 (673)
.+.....++.++++++.|++|++...++ ..++..||.++.+..++++|.-+..+|.++-.+. ..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 3345566889999999999999985544 3478889999999999999999999998874322 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691 186 AHSNLASVLQQQGKLTDALLHYKEAIRIQ------PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248 (673)
Q Consensus 186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~ 248 (673)
+++.++..+..+|+...|.++++++.++. +-.......+|.+|...|+.+.|..-|++|....
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 67889999999999999999999998773 2345577889999999999999999999998753
No 281
>KOG4642|consensus
Probab=97.83 E-value=0.00012 Score=70.96 Aligned_cols=91 Identities=22% Similarity=0.219 Sum_probs=85.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy17691 123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTD 202 (673)
Q Consensus 123 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 202 (673)
+..++...+|+.|+.+|-+++.++|..+..+.+.+.++++.++++.+....+++++++|+....++.+|..+.....|++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 34455566899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy17691 203 ALLHYKEAIRI 213 (673)
Q Consensus 203 A~~~~~~al~~ 213 (673)
|+..++++..+
T Consensus 97 aI~~Lqra~sl 107 (284)
T KOG4642|consen 97 AIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999999665
No 282
>KOG1941|consensus
Probab=97.81 E-value=0.00041 Score=71.04 Aligned_cols=142 Identities=19% Similarity=0.190 Sum_probs=114.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q psy17691 128 LLIQVSEAEECYNTALRLCPTH-----ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQ 196 (673)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~-----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~ 196 (673)
..-++.+++.+-+..+.+.... ..+...+|..+..++.|+++++.|++|+++..++ -.++..||..+..
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 3557888888887777764332 3567779999999999999999999999985544 3578899999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHH
Q psy17691 197 QGKLTDALLHYKEAIRIQPSF----------ADAYSNMGNTLKEMQDIQGALQCYSRAIQIN------PGFADAHSNLAS 260 (673)
Q Consensus 197 ~g~~~eA~~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~------p~~~~a~~~La~ 260 (673)
..++++|+-+..+|.++-... ..+++.++..+..+|+.-.|.++.+++.++. +-.......+|.
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 999999999999999874321 3467889999999999999999999998763 223445667889
Q ss_pred HHHHcCCCc
Q psy17691 261 IHKDSGKRG 269 (673)
Q Consensus 261 ~~~~~g~~~ 269 (673)
+|...|+.+
T Consensus 255 IyR~~gd~e 263 (518)
T KOG1941|consen 255 IYRSRGDLE 263 (518)
T ss_pred HHHhcccHh
Confidence 999999876
No 283
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.77 E-value=5.5e-05 Score=54.53 Aligned_cols=40 Identities=35% Similarity=0.350 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy17691 152 SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191 (673)
Q Consensus 152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 191 (673)
++..+|.+|..+|++++|++.|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444444555555555555555555555555444444444
No 284
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=97.74 E-value=0.00014 Score=81.58 Aligned_cols=140 Identities=13% Similarity=0.087 Sum_probs=105.6
Q ss_pred ccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhhhhhHHHH
Q psy17691 484 LYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQAT 563 (673)
Q Consensus 484 ~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (673)
..|-....++++++++.++|++.|.|.+.. . +..-...+++.
T Consensus 331 ~ek~~~~~I~av~~~~~~~p~~~L~~~gy~--~------------------------------------~~~~~~~l~~~ 372 (519)
T TIGR03713 331 SDEELQQILQQLLQYILKNPDYELKILTYN--N------------------------------------DNDITQLLEDI 372 (519)
T ss_pred ChHHHHHHHHHHHHHHhhCCCeEEEEEEec--C------------------------------------chhHHHHHHHH
Confidence 568899999999999999999999987721 0 00112334343
Q ss_pred HHHcCCC----------------------------CCeEEeccCcChHHHHHhcccccEEecCCCC-CCcchhhhhhhcC
Q psy17691 564 AQALGLD----------------------------QHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWTG 614 (673)
Q Consensus 564 ~~~~g~~----------------------------~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~-~g~~t~~eal~~G 614 (673)
.++.++. .+||.|.|..+..+....|..+.+++|+-.. +.+ |.+||+..|
T Consensus 373 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~G 451 (519)
T TIGR03713 373 LEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAG 451 (519)
T ss_pred HHHHHhhhchhhhccccchhhhhhhcccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcC
Confidence 3444332 1799999988877899999999999998744 556 999999999
Q ss_pred CceeecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 615 TPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 615 vPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
+|+| -.|+ +-+-.=|-.++|..+.++..+..+.+..|+...++++.+.
T Consensus 452 iPqI-nyg~--------~~~V~d~~NG~li~d~~~l~~al~~~L~~~~~wn~~~~~s 499 (519)
T TIGR03713 452 IPQI-NKVE--------TDYVEHNKNGYIIDDISELLKALDYYLDNLKNWNYSLAYS 499 (519)
T ss_pred CCee-ecCC--------ceeeEcCCCcEEeCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999 2221 1122237778888999999999999999999999888764
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.74 E-value=3.2e-05 Score=52.31 Aligned_cols=32 Identities=38% Similarity=0.632 Sum_probs=18.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGAL 238 (673)
Q Consensus 207 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 238 (673)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555554
No 286
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.72 E-value=8.4e-05 Score=81.25 Aligned_cols=51 Identities=14% Similarity=0.095 Sum_probs=42.3
Q ss_pred CeEEeccCc-ChHHHHHhcccccEEec-CCCCCCcchhhhhhhcCCceeecCC
Q psy17691 572 HRILFSNVA-AKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTPVVTLPG 622 (673)
Q Consensus 572 ~rv~~~~~~-~~~~~~~~~~~~Di~Ld-~~p~~g~~t~~eal~~GvPvvt~~g 622 (673)
++|.+.|.. +..+....|..+|+|+- |.-++-|+|.+|||++|+|||+-.-
T Consensus 286 ~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~ 338 (405)
T PRK10125 286 GNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHS 338 (405)
T ss_pred cceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCC
Confidence 467888865 46788999999999955 5677889999999999999998644
No 287
>KOG0376|consensus
Probab=97.72 E-value=5.3e-05 Score=80.63 Aligned_cols=104 Identities=22% Similarity=0.214 Sum_probs=62.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17691 124 ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDA 203 (673)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 203 (673)
...+.-+.++.|+..|.+|++++|+++..+.+.+..+.+.+++..|+..+.++++.+|....+|+..|......+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 33444556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691 204 LLHYKEAIRIQPSFADAYSNMGNT 227 (673)
Q Consensus 204 ~~~~~~al~~~p~~~~~~~~lg~~ 227 (673)
+..|++...+.|+++.+...+-.|
T Consensus 92 ~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 92 LLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHhhhcCcCcHHHHHHHHHH
Confidence 666666666666665555444433
No 288
>KOG2471|consensus
Probab=97.71 E-value=0.00023 Score=75.32 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=119.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCC--------CHHHHHHHH
Q psy17691 121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKA-LEVFPE--------FAAAHSNLA 191 (673)
Q Consensus 121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~a-l~~~p~--------~~~~~~~la 191 (673)
+....++.+.+..-+..-.+.++....+.+.+....++.++-.|++.+|.+.+... +...|. ...+|+|||
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc
Confidence 33344556667777777777788788888999999999999999999999987654 223333 234689999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh---------C---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691 192 SVLQQQGKLTDALLHYKEAIRI---------Q---------PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253 (673)
Q Consensus 192 ~~~~~~g~~~eA~~~~~~al~~---------~---------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~ 253 (673)
.++++.|.|..+..+|.+|++- . ....++++|.|..|...|+.-.|.+||.++....-.++.
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr 370 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR 370 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH
Confidence 9999999999999999999961 1 124578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc
Q psy17691 254 AHSNLASIHKDS 265 (673)
Q Consensus 254 a~~~La~~~~~~ 265 (673)
.|..|+.|....
T Consensus 371 lWLRlAEcCima 382 (696)
T KOG2471|consen 371 LWLRLAECCIMA 382 (696)
T ss_pred HHHHHHHHHHHH
Confidence 999999987643
No 289
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=97.68 E-value=0.00055 Score=74.62 Aligned_cols=141 Identities=18% Similarity=0.311 Sum_probs=93.5
Q ss_pred CcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCC
Q psy17691 474 DAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFP 553 (673)
Q Consensus 474 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (673)
..++|.+++......+..++...+.+...+...++..+ .
T Consensus 225 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g-----------------------------------------~ 263 (392)
T TIGR01426 225 RPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVG-----------------------------------------R 263 (392)
T ss_pred CCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEEC-----------------------------------------C
Confidence 35678888877666666666666667666644444433 1
Q ss_pred hhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHH
Q psy17691 554 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQ 633 (673)
Q Consensus 554 ~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~ 633 (673)
+.....+ . .+ +++|.+.+..++.+. +..+|+++. .+|..|++|||.+|+|+|+++...- ...-+..
T Consensus 264 ~~~~~~~----~--~~-~~~v~~~~~~p~~~l---l~~~~~~I~---hgG~~t~~Eal~~G~P~v~~p~~~d-q~~~a~~ 329 (392)
T TIGR01426 264 GVDPADL----G--EL-PPNVEVRQWVPQLEI---LKKADAFIT---HGGMNSTMEALFNGVPMVAVPQGAD-QPMTARR 329 (392)
T ss_pred CCChhHh----c--cC-CCCeEEeCCCCHHHH---HhhCCEEEE---CCCchHHHHHHHhCCCEEecCCccc-HHHHHHH
Confidence 1111111 1 13 478888999887654 457999984 6788899999999999999875432 3344555
Q ss_pred HHhcCCCcccc---CCHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691 634 LATLGCPELIA---RTHKEYQDIAIRLGTDRDYCEKALL 669 (673)
Q Consensus 634 l~~~gl~~~ia---~~~~~yv~~a~~la~d~~~~~~~~~ 669 (673)
+...|....+- .+.++..+...++..|++.++.++.
T Consensus 330 l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~ 368 (392)
T TIGR01426 330 IAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAERLRK 368 (392)
T ss_pred HHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66777665443 2567888878788899987766654
No 290
>KOG1070|consensus
Probab=97.67 E-value=0.0018 Score=76.55 Aligned_cols=159 Identities=15% Similarity=0.162 Sum_probs=112.4
Q ss_pred HhcCCCChhHH-HHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy17691 110 YALSPDDGTTF-SYIISVLLLIQVSEAEECYNTALRL-CPTH----ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF 183 (673)
Q Consensus 110 ~~l~p~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~-~p~~----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~ 183 (673)
...+|+....| .+....++.++.++|.+..++||.. ++.. ..+|..+-++...-|.-+.-.+.|++|.+.+. .
T Consensus 1451 vrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~ 1529 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD-A 1529 (1710)
T ss_pred HhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-h
Confidence 34577877777 5666677899999999999999984 3332 23444444444444555666677777776643 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q psy17691 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG--FADAHSNLASI 261 (673)
Q Consensus 184 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~--~~~a~~~La~~ 261 (673)
..+|..|..+|...+++++|.++|+..++...+....|..+|..+.++.+-++|...+++|++.-|. +.+.....+++
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 4566777777777777777777777777777677777777777777777777777777777777776 66667777777
Q ss_pred HHHcCCCc
Q psy17691 262 HKDSGKRG 269 (673)
Q Consensus 262 ~~~~g~~~ 269 (673)
..+.|+-+
T Consensus 1610 EFk~GDae 1617 (1710)
T KOG1070|consen 1610 EFKYGDAE 1617 (1710)
T ss_pred HhhcCCch
Confidence 77777766
No 291
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.66 E-value=0.00097 Score=69.04 Aligned_cols=129 Identities=12% Similarity=0.103 Sum_probs=104.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17691 125 SVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKRE-QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDA 203 (673)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 203 (673)
...+.+..+.|..+|++|++..+....+|...|.+.+. .++.+.|...|+.+++..|.+...|..+...+...++.+.|
T Consensus 10 ~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~a 89 (280)
T PF05843_consen 10 FMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNA 89 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHH
Confidence 33445668999999999987666678899999999777 55666699999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691 204 LLHYKEAIRIQPSFA---DAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253 (673)
Q Consensus 204 ~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~ 253 (673)
...|++++..-+... .+|......-.+.|+.+.....++++.+..|+...
T Consensus 90 R~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 90 RALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999998866654 58888888888999999999999999998888443
No 292
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.66 E-value=4.8e-05 Score=51.42 Aligned_cols=32 Identities=47% Similarity=0.667 Sum_probs=16.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691 139 YNTALRLCPTHADSLNNLANIKREQGYIEEAT 170 (673)
Q Consensus 139 ~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~ 170 (673)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44455555555555555555555555555443
No 293
>PLN03004 UDP-glycosyltransferase
Probab=97.63 E-value=0.00066 Score=74.73 Aligned_cols=155 Identities=12% Similarity=0.152 Sum_probs=98.4
Q ss_pred CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691 473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF 552 (673)
Q Consensus 473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (673)
...|+|.||+....++++.++-.+.-|...+...||.+..+...+... +
T Consensus 269 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~----------------------~--------- 317 (451)
T PLN03004 269 EKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTE----------------------L--------- 317 (451)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccc----------------------c---------
Confidence 457999999999999999999999999999998888775210000000 0
Q ss_pred ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccE--EecCCCCCCcchhhhhhhcCCceeecCCCcchhhhH
Q psy17691 553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADV--CLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVA 630 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di--~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 630 (673)
. ....+-.-|.++ +.-..+++.++.|+.+.|+ ..++ |+ .++|-+|++||+++|||+|+++-- .-....
T Consensus 318 -~-~~~~lp~gf~er-~~~~g~~v~~W~PQ~~iL~---H~~v~~Fv---TH~G~nS~lEal~~GVP~v~~P~~-~DQ~~n 387 (451)
T PLN03004 318 -D-LKSLLPEGFLSR-TEDKGMVVKSWAPQVPVLN---HKAVGGFV---THCGWNSILEAVCAGVPMVAWPLY-AEQRFN 387 (451)
T ss_pred -c-hhhhCChHHHHh-ccCCcEEEEeeCCHHHHhC---CCccceEe---ccCcchHHHHHHHcCCCEEecccc-ccchhh
Confidence 0 000011112221 2123578889999998776 3444 54 488999999999999999998742 112222
Q ss_pred HHHHH-hcCCCcccc------CCHHHHHHHHHHhcCCHHHHHHHH
Q psy17691 631 ASQLA-TLGCPELIA------RTHKEYQDIAIRLGTDRDYCEKAL 668 (673)
Q Consensus 631 ~~~l~-~~gl~~~ia------~~~~~yv~~a~~la~d~~~~~~~~ 668 (673)
+..+. .+|+.--+. -+.++-.+...++..|...+++.+
T Consensus 388 a~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a~ 432 (451)
T PLN03004 388 RVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVRERTM 432 (451)
T ss_pred HHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHHHHHH
Confidence 33443 344432221 267777777777888876666554
No 294
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.63 E-value=0.01 Score=58.95 Aligned_cols=172 Identities=15% Similarity=0.115 Sum_probs=127.4
Q ss_pred cHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCCh
Q psy17691 38 FPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDG 117 (673)
Q Consensus 38 ~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~ 117 (673)
-+..+++.|....+.|++++|.. .++.+....|. .|-..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~-~fe~l~~~~p~----------------------------------------s~~~~ 71 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIK-YFEALDSRHPF----------------------------------------SPYSE 71 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHcCCC----------------------------------------CcccH
Confidence 56789999999999999998875 33333222221 11122
Q ss_pred hHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCH-
Q psy17691 118 TTF-SYIISVLLLIQVSEAEECYNTALRLCPTHAD---SLNNLANIKREQ--------GYIEEATRLYLKALEVFPEFA- 184 (673)
Q Consensus 118 ~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~Lg~~~~~~--------g~~~eA~~~~~~al~~~p~~~- 184 (673)
.+. ..+-.+++.+++++|+...++-+++.|.+++ +++..|.+++.. .-..+|+..++..++..|+..
T Consensus 72 qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 72 QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence 232 4456678899999999999999999988754 677778776643 335678889999999999872
Q ss_pred ----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691 185 ----------------AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF---ADAYSNMGNTLKEMQDIQGALQCYSRAI 245 (673)
Q Consensus 185 ----------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~Al 245 (673)
.--...|..|.+.|.+..|+..+++.++..|+. .+++..+..+|..+|-.++|...- +.|
T Consensus 152 a~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~-~vl 230 (254)
T COG4105 152 APDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA-KVL 230 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH-HHH
Confidence 112346888999999999999999999987765 468889999999999999997764 455
Q ss_pred HhC-CCC
Q psy17691 246 QIN-PGF 251 (673)
Q Consensus 246 ~l~-p~~ 251 (673)
..+ |++
T Consensus 231 ~~N~p~s 237 (254)
T COG4105 231 GANYPDS 237 (254)
T ss_pred HhcCCCC
Confidence 554 443
No 295
>KOG0376|consensus
Probab=97.62 E-value=8.3e-05 Score=79.19 Aligned_cols=112 Identities=24% Similarity=0.297 Sum_probs=104.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691 154 NNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD 233 (673)
Q Consensus 154 ~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 233 (673)
-+-+...+..+.|+.|+..|.+|++++|+++..+.+.+..+.+.+++..|+.-+.++++.+|....+|+..|.+++.+++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691 234 IQGALQCYSRAIQINPGFADAHSNLASIHKDS 265 (673)
Q Consensus 234 ~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~ 265 (673)
+.+|...|++...+.|+++.+...+..|-...
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNKIV 119 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence 99999999999999999999988887775433
No 296
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.60 E-value=0.002 Score=69.26 Aligned_cols=105 Identities=21% Similarity=0.227 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Q psy17691 152 SLNNLANIKREQGYIEEATRLYLKALEVFPE--FAAAHSNLASVLQQQGKLTDALLHYKEAIRI-QPSFADAYSNMGNTL 228 (673)
Q Consensus 152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~lg~~~ 228 (673)
+...+|.+..++|+.+||++.++..++.+|. +..++.+|..++...++|.++...+.+--++ -|+.+...+.-+.+.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 4455677777777777777777777766654 3556777777777777777777666664333 244444444444332
Q ss_pred HH-cCC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q psy17691 229 KE-MQD---------------IQGALQCYSRAIQINPGFADAHS 256 (673)
Q Consensus 229 ~~-~g~---------------~~eA~~~~~~Al~l~p~~~~a~~ 256 (673)
.+ .++ -..|.+.+.+|++.+|.-+....
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 22 111 13477899999999998877653
No 297
>KOG0545|consensus
Probab=97.56 E-value=0.00092 Score=65.16 Aligned_cols=101 Identities=17% Similarity=0.077 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17691 120 FSYIISVLLLIQVSEAEECYNTALRL--------CPTHA----------DSLNNLANIKREQGYIEEATRLYLKALEVFP 181 (673)
Q Consensus 120 ~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~----------~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p 181 (673)
...++.++..|+|.+|...|+.|+.. .|..+ ..+.|+++++...|+|-++++.....|..+|
T Consensus 182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~ 261 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP 261 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence 45667889999999999999999765 35543 3688999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy17691 182 EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA 220 (673)
Q Consensus 182 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 220 (673)
.+..+++..|.+....=+..+|.+-+.++++++|.-..+
T Consensus 262 ~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 262 GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999999999999999999999986543
No 298
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.56 E-value=0.00083 Score=69.91 Aligned_cols=145 Identities=19% Similarity=0.144 Sum_probs=102.4
Q ss_pred EEEecCCcc--cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCC
Q psy17691 476 IVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFP 553 (673)
Q Consensus 476 ~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (673)
.++.+++++ .|..+..++....+....|+..+++++.
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~----------------------------------------- 238 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGD----------------------------------------- 238 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcC-----------------------------------------
Confidence 455555554 4777888888888888777777777761
Q ss_pred hhh-hhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCC-CCCcchhhhhhhcCCceeecCCCcchhhhHH
Q psy17691 554 AVG-EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGTPVVTLPGETLASRVAA 631 (673)
Q Consensus 554 ~~~-~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p-~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~ 631 (673)
+.. .+.+...+...+. .+.|.|.|..+.++....++.+|+++-|.. ++-|.+++||+++|+|||+...+....
T Consensus 239 ~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e---- 313 (381)
T COG0438 239 GPERREELEKLAKKLGL-EDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIPE---- 313 (381)
T ss_pred CCccHHHHHHHHHHhCC-CCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcCCcEEECCCCChHH----
Confidence 111 2445556677776 478999999987777778888999988864 477888999999999999876643322
Q ss_pred HHHHhc--CCCccccC-CHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691 632 SQLATL--GCPELIAR-THKEYQDIAIRLGTDRDYCEKALL 669 (673)
Q Consensus 632 ~~l~~~--gl~~~ia~-~~~~yv~~a~~la~d~~~~~~~~~ 669 (673)
++..- |. ++.. +.++.++....+..+.+.++.+..
T Consensus 314 -~~~~~~~g~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 351 (381)
T COG0438 314 -VVEDGETGL--LVPPGDVEELADALEQLLEDPELREELGE 351 (381)
T ss_pred -HhcCCCceE--ecCCCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 23332 33 3333 479999999999988866666553
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.54 E-value=0.00015 Score=48.88 Aligned_cols=32 Identities=38% Similarity=0.767 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691 219 DAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250 (673)
Q Consensus 219 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~ 250 (673)
.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666665
No 300
>KOG2053|consensus
Probab=97.53 E-value=0.0025 Score=72.51 Aligned_cols=133 Identities=17% Similarity=0.033 Sum_probs=112.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691 125 SVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL 204 (673)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 204 (673)
.....+++.+|+....+.++..|+...+...-|.++.++|+.++|..+++..-...+++...+-.+-.+|..++++++|.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 34456799999999999999999999999999999999999999998888888888888889999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy17691 205 LHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL 258 (673)
Q Consensus 205 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~L 258 (673)
.+|+++++.+|+ -+....+=.+|.+-+.|.+-.+.--+..+..|+++....+.
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV 150 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV 150 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH
Confidence 999999999999 77777887888888887765555555555677766544443
No 301
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.50 E-value=0.0033 Score=67.60 Aligned_cols=140 Identities=20% Similarity=0.167 Sum_probs=101.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------
Q psy17691 120 FSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---------------- 183 (673)
Q Consensus 120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---------------- 183 (673)
........+..+.++-++.-++|++++|+.+.++..|+.= ......+|+++|+++++.....
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 3444555677899999999999999999999999988752 2344678888888887652110
Q ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q psy17691 184 ---------AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS--FADAYSNMGNTLKEMQDIQGALQCYSRAIQI-NPGF 251 (673)
Q Consensus 184 ---------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l-~p~~ 251 (673)
..+...+|.+..++|+.+||++.++..++..|. +..++.+|-.++..+++|.++...+.+-=++ -|+.
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS 329 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS 329 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch
Confidence 234567888888889999999999888887765 4567888888888888888888888774222 2444
Q ss_pred HHHHHHHHHH
Q psy17691 252 ADAHSNLASI 261 (673)
Q Consensus 252 ~~a~~~La~~ 261 (673)
+...+.-+.+
T Consensus 330 Ati~YTaALL 339 (539)
T PF04184_consen 330 ATICYTAALL 339 (539)
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 302
>PLN02670 transferase, transferring glycosyl groups
Probab=97.47 E-value=0.0013 Score=72.87 Aligned_cols=154 Identities=12% Similarity=0.138 Sum_probs=96.3
Q ss_pred CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691 473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF 552 (673)
Q Consensus 473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (673)
+..|+|.||+....++++.++-.+.-|.+.|...||.+..+.....+ ..+..
T Consensus 277 ~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~------------------~~~~l---------- 328 (472)
T PLN02670 277 VNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQN------------------ALEML---------- 328 (472)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccc------------------hhhcC----------
Confidence 45799999999999999999999999999999888876521000000 00000
Q ss_pred ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHH
Q psy17691 553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAAS 632 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~ 632 (673)
+ +...++....| +++.++.|+.+.|+- ..+..|+ .++|-+|++||+++|||+|+++-- .-....+.
T Consensus 329 p----~~f~~~~~~rG-----~vv~~W~PQ~~IL~H-~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~-~DQ~~Na~ 394 (472)
T PLN02670 329 P----DGFEERVKGRG-----MIHVGWVPQVKILSH-ESVGGFL---THCGWNSVVEGLGFGRVLILFPVL-NEQGLNTR 394 (472)
T ss_pred C----hHHHHhccCCC-----eEEeCcCCHHHHhcC-cccceee---ecCCcchHHHHHHcCCCEEeCcch-hccHHHHH
Confidence 1 12222222222 577899998887763 3333454 489999999999999999998732 11122333
Q ss_pred HHHhcCCCcccc-------CCHHHHHHHHHHhcCCH---HHHHHHH
Q psy17691 633 QLATLGCPELIA-------RTHKEYQDIAIRLGTDR---DYCEKAL 668 (673)
Q Consensus 633 ~l~~~gl~~~ia-------~~~~~yv~~a~~la~d~---~~~~~~~ 668 (673)
.+...|+.--+. -+.++-.+...++..|. +.|++.+
T Consensus 395 ~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~ 440 (472)
T PLN02670 395 LLHGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAK 440 (472)
T ss_pred HHHHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 444455543221 25677777777777664 4554444
No 303
>KOG0853|consensus
Probab=97.46 E-value=0.001 Score=72.41 Aligned_cols=169 Identities=15% Similarity=0.131 Sum_probs=116.4
Q ss_pred ccccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhccc-----CeeEEeeccCCcCCCCCCCCcccccCCCCccch
Q psy17691 464 TSRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVP-----NSILWLLKFPAVGEANISRPLFRPRLRPSASTS 536 (673)
Q Consensus 464 ~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (673)
..|...|+....++|.++|+.. |-..-.+..+.+.....| .-++.+.+.++ .+ .|
T Consensus 262 ~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G------~d----~~-------- 323 (495)
T KOG0853|consen 262 PVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRG------YD----ER-------- 323 (495)
T ss_pred ccceeeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCC------cc----cc--------
Confidence 3455567778889999999776 555566777777777764 34555555221 00 01
Q ss_pred hhhhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCC-CCCcchhhhhhhcCC
Q psy17691 537 IVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGT 615 (673)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p-~~g~~t~~eal~~Gv 615 (673)
++. +......|+..+++.++..+.+.|++..+..+-..++..+.+.+-+.. +.=|.|++|||++|+
T Consensus 324 -----~se--------n~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~gl 390 (495)
T KOG0853|consen 324 -----DSE--------NVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGL 390 (495)
T ss_pred -----chh--------hHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCC
Confidence 011 223356788999999997788999998887777778888888877653 466999999999999
Q ss_pred ceeec-CCCcchhhhHHHHHHhcCCCc-cccCCHH---HHHHHHHHhcCCHHHHHHHHhh
Q psy17691 616 PVVTL-PGETLASRVAASQLATLGCPE-LIARTHK---EYQDIAIRLGTDRDYCEKALLY 670 (673)
Q Consensus 616 Pvvt~-~g~~~~~r~~~~~l~~~gl~~-~ia~~~~---~yv~~a~~la~d~~~~~~~~~~ 670 (673)
|||.. .|.+.-. . .-|.++ ++..+.+ ...+.-+.+.+|++.+.+++++
T Consensus 391 PvvAt~~GGP~Ei------V-~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~ 443 (495)
T KOG0853|consen 391 PVVATNNGGPAEI------V-VHGVTGLLIDPGQEAVAELADALLKLRRDPELWARMGKN 443 (495)
T ss_pred CEEEecCCCceEE------E-EcCCcceeeCCchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99865 4433211 0 114444 3334455 4888999999999999999864
No 304
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=97.46 E-value=0.00038 Score=82.12 Aligned_cols=150 Identities=15% Similarity=0.071 Sum_probs=97.4
Q ss_pred CcEEEecCCccc--ccChhhHHHHHHHHhcccCee--EEe--eccCCcCCCCCCCCcccccCCCCccchhhhhccCchhh
Q psy17691 474 DAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSI--LWL--LKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSIL 547 (673)
Q Consensus 474 ~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~--l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (673)
+..++.+++|+. |..+..++++.++|+..|+.+ ++| +..|..
T Consensus 278 ~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr-------------------------------- 325 (797)
T PLN03063 278 GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTR-------------------------------- 325 (797)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCC--------------------------------
Confidence 456677788765 999999999999999999863 333 331110
Q ss_pred hhccCChhhhhhHHHHHHHcC--CCC--Ce-----EEec-cCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCc
Q psy17691 548 WLLKFPAVGEANIQATAQALG--LDQ--HR-----ILFS-NVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTP 616 (673)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~g--~~~--~r-----v~~~-~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvP 616 (673)
..++..+.+++.+.+.+ +.. ++ |++. +.++.++..++|+.+|||+-|. -.+=+.+.+|||++|+|
T Consensus 326 ----~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p 401 (797)
T PLN03063 326 ----NDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKA 401 (797)
T ss_pred ----CchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecC
Confidence 12344556777776664 421 11 2333 4688899999999999997765 56779999999999988
Q ss_pred ----eeecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcC-CHHHHHHH
Q psy17691 617 ----VVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGT-DRDYCEKA 667 (673)
Q Consensus 617 ----vvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~-d~~~~~~~ 667 (673)
+|.- +++.+ -..+|-..++. .|.++..+...++.+ +++.+++.
T Consensus 402 ~~gvlVlS-------e~~G~-~~~l~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r 451 (797)
T PLN03063 402 KKGVLVLS-------EFAGA-GQSLGAGALLVNPWNITEVSSAIKEALNMSDEERETR 451 (797)
T ss_pred CCCCEEee-------CCcCc-hhhhcCCeEEECCCCHHHHHHHHHHHHhCCHHHHHHH
Confidence 3331 11110 00124344443 578888887777777 66655543
No 305
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.44 E-value=0.00033 Score=47.03 Aligned_cols=33 Identities=15% Similarity=0.522 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691 219 DAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251 (673)
Q Consensus 219 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~ 251 (673)
.+|+.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 455666666666666666666666666666653
No 306
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.36 E-value=0.0058 Score=56.46 Aligned_cols=62 Identities=26% Similarity=0.324 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691 185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQ 246 (673)
Q Consensus 185 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 246 (673)
.+...++..+...|++++|+..+++++..+|.+-.+|..+-.+|..+|+..+|++.|++..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45666788888899999999999999999999999999999999999999999998888754
No 307
>PLN00414 glycosyltransferase family protein
Probab=97.34 E-value=0.0019 Score=71.25 Aligned_cols=158 Identities=11% Similarity=0.164 Sum_probs=92.5
Q ss_pred CCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691 472 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK 551 (673)
Q Consensus 472 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (673)
+++.|+|.||+....++.+-+.-.+.-|...-.--+|.+..+ .+....
T Consensus 250 ~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~-~~~~~~------------------------------- 297 (446)
T PLN00414 250 EPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPP-KGSSTV------------------------------- 297 (446)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecC-CCcccc-------------------------------
Confidence 456899999999999986555554554555444456766521 010000
Q ss_pred CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHH
Q psy17691 552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAA 631 (673)
Q Consensus 552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~ 631 (673)
.+.-.+.+..+....| +++.++.|+.+.|.- ..++.|+ .++|.+|++||+++|||+|+++-- .-....+
T Consensus 298 -~~~lp~~f~~r~~~~g-----~vv~~w~PQ~~vL~h-~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~-~dQ~~na 366 (446)
T PLN00414 298 -QEALPEGFEERVKGRG-----IVWEGWVEQPLILSH-PSVGCFV---NHCGFGSMWESLVSDCQIVFIPQL-ADQVLIT 366 (446)
T ss_pred -hhhCChhHHHHhcCCC-----eEEeccCCHHHHhcC-CccceEE---ecCchhHHHHHHHcCCCEEecCcc-cchHHHH
Confidence 0000122333332222 567799999887763 3345555 489999999999999999999752 1122333
Q ss_pred HHH-HhcCCCcccc------CCHHHHHHHHHHhcCCH-HHHHHHHhhhc
Q psy17691 632 SQL-ATLGCPELIA------RTHKEYQDIAIRLGTDR-DYCEKALLYHE 672 (673)
Q Consensus 632 ~~l-~~~gl~~~ia------~~~~~yv~~a~~la~d~-~~~~~~~~~~~ 672 (673)
.++ ..+|+.--+. -+.++-.+...++..|. +..+++|+.++
T Consensus 367 ~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~ 415 (446)
T PLN00414 367 RLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHK 415 (446)
T ss_pred HHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHH
Confidence 444 3455542221 26777777777777654 55566665543
No 308
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.013 Score=59.24 Aligned_cols=168 Identities=16% Similarity=0.185 Sum_probs=118.4
Q ss_pred CCCchhHHHHHHHhcC-CCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691 98 GMHNKSRVEIFCYALS-PDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKA 176 (673)
Q Consensus 98 ~~~~~~a~~~~~~~l~-p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~a 176 (673)
+...++.+..+...+- +.....+..+......|++.+|...+..+++..|++.++...++.+|...|+.++|...+...
T Consensus 115 G~qPesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 115 GAQPESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred CCCcHHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 3344445555433333 333445566667778999999999999999999999999999999999999999998887764
Q ss_pred HhhCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH
Q psy17691 177 LEVFPEFAAAHSNLA--SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP--GFA 252 (673)
Q Consensus 177 l~~~p~~~~~~~~la--~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p--~~~ 252 (673)
-....+.. .....+ ..+.+.....+ ...+++.+..+|++.++-+.+|..+...|+.++|.+.+-..++.+- ++.
T Consensus 195 P~~~~~~~-~~~l~a~i~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~ 272 (304)
T COG3118 195 PLQAQDKA-AHGLQAQIELLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG 272 (304)
T ss_pred cccchhhH-HHHHHHHHHHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc
Confidence 22222211 111111 12222222221 2345666788999999999999999999999999999999988765 345
Q ss_pred HHHHHHHHHHHHcCC
Q psy17691 253 DAHSNLASIHKDSGK 267 (673)
Q Consensus 253 ~a~~~La~~~~~~g~ 267 (673)
.+...|-.++...|.
T Consensus 273 ~~Rk~lle~f~~~g~ 287 (304)
T COG3118 273 EARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHHHhcCC
Confidence 677777777777664
No 309
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.34 E-value=0.00038 Score=46.89 Aligned_cols=31 Identities=32% Similarity=0.477 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691 186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPS 216 (673)
Q Consensus 186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 216 (673)
+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
No 310
>PLN02173 UDP-glucosyl transferase family protein
Probab=97.33 E-value=0.0018 Score=71.26 Aligned_cols=147 Identities=13% Similarity=0.221 Sum_probs=89.5
Q ss_pred CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691 473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF 552 (673)
Q Consensus 473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (673)
.+.++|.||+....++++.++-.+.-|...| .+|.+..+ +
T Consensus 263 ~~svvyvsfGS~~~~~~~~~~ela~gLs~~~--flWvvr~~---~----------------------------------- 302 (449)
T PLN02173 263 QGSVVYIAFGSMAKLSSEQMEEIASAISNFS--YLWVVRAS---E----------------------------------- 302 (449)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHhcCCC--EEEEEecc---c-----------------------------------
Confidence 4569999999999999999888888885555 55655410 0
Q ss_pred ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHH
Q psy17691 553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAAS 632 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~ 632 (673)
.+.+-+-+.+. +..+++.+.++.|+.+.|+- ..+..|+ .++|.+|++||+++|||+|+++-- .-....+-
T Consensus 303 ----~~~lp~~~~~~-~~~~~~~i~~W~PQ~~iL~H-~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~-~DQ~~Na~ 372 (449)
T PLN02173 303 ----ESKLPPGFLET-VDKDKSLVLKWSPQLQVLSN-KAIGCFM---THCGWNSTMEGLSLGVPMVAMPQW-TDQPMNAK 372 (449)
T ss_pred ----hhcccchHHHh-hcCCceEEeCCCCHHHHhCC-CccceEE---ecCccchHHHHHHcCCCEEecCch-hcchHHHH
Confidence 00011111111 22467888899998887763 3344554 489999999999999999998742 11122333
Q ss_pred HHHh-cCCCcccc-------CCHHHHHHHHHHhcCCHHHHHHHHhh
Q psy17691 633 QLAT-LGCPELIA-------RTHKEYQDIAIRLGTDRDYCEKALLY 670 (673)
Q Consensus 633 ~l~~-~gl~~~ia-------~~~~~yv~~a~~la~d~~~~~~~~~~ 670 (673)
.+.. +|+.--+. -+.|+-.+...++..|.+. +++|..
T Consensus 373 ~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~-~~~r~~ 417 (449)
T PLN02173 373 YIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKS-KEMKEN 417 (449)
T ss_pred HHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChH-HHHHHH
Confidence 3432 23321110 1667777777777766432 444443
No 311
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.32 E-value=0.0019 Score=71.31 Aligned_cols=146 Identities=12% Similarity=0.224 Sum_probs=91.9
Q ss_pred CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691 473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF 552 (673)
Q Consensus 473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (673)
.+.|+|.||+...+++.+.+.-.+.-|+..+...||.+..+...+. .|
T Consensus 263 ~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~----------------------------~~---- 310 (451)
T PLN02410 263 KNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGS----------------------------EW---- 310 (451)
T ss_pred CCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCccccc----------------------------ch----
Confidence 4589999999999999999999999999999988887651100000 00
Q ss_pred ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHH
Q psy17691 553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAAS 632 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~ 632 (673)
.+.+-.-|.++ + .+|..+.++.|+.+.|.- ..+..|+ .++|-+|++||+++|||+|+++--. -....+.
T Consensus 311 ----~~~lp~~f~er-~-~~~g~v~~w~PQ~~iL~h-~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~-DQ~~na~ 379 (451)
T PLN02410 311 ----IESLPKEFSKI-I-SGRGYIVKWAPQKEVLSH-PAVGGFW---SHCGWNSTLESIGEGVPMICKPFSS-DQKVNAR 379 (451)
T ss_pred ----hhcCChhHHHh-c-cCCeEEEccCCHHHHhCC-CccCeee---ecCchhHHHHHHHcCCCEEeccccc-cCHHHHH
Confidence 00011112222 2 367777799999987763 3344455 4889999999999999999986421 1122223
Q ss_pred HHHhc-CCCccc--cCCHHHHHHHHHHhcCCH
Q psy17691 633 QLATL-GCPELI--ARTHKEYQDIAIRLGTDR 661 (673)
Q Consensus 633 ~l~~~-gl~~~i--a~~~~~yv~~a~~la~d~ 661 (673)
.+... |+.--+ --+.++..+...++..|+
T Consensus 380 ~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~~ 411 (451)
T PLN02410 380 YLECVWKIGIQVEGDLDRGAVERAVKRLMVEE 411 (451)
T ss_pred HHHHHhCeeEEeCCcccHHHHHHHHHHHHcCC
Confidence 33221 332111 126677666666777665
No 312
>KOG1586|consensus
Probab=97.32 E-value=0.0094 Score=58.00 Aligned_cols=135 Identities=16% Similarity=0.198 Sum_probs=98.4
Q ss_pred hHHHHHHHHHH-cCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------
Q psy17691 118 TTFSYIISVLL-LIQVSEAEECYNTALRLC-----PT-HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA------ 184 (673)
Q Consensus 118 ~~~~~~~~~~~-~g~~~~A~~~~~~al~~~-----p~-~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~------ 184 (673)
+.+..++..++ .++++.|=..|.++-+.. .+ .+..+...+++|.+ .+.++|+.++++++++..+..
T Consensus 35 dl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aA 113 (288)
T KOG1586|consen 35 ELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAA 113 (288)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34445555555 568888888888887653 12 24455556666554 599999999999999976653
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691 185 AAHSNLASVLQQQ-GKLTDALLHYKEAIRIQPSF------ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253 (673)
Q Consensus 185 ~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~ 253 (673)
..+..+|.+|..- .++++|+.+|+++-+..... ..++...+..-...++|.+|+..|++.....-++.-
T Consensus 114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 3455889998765 89999999999998764332 245666777778899999999999998876555543
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.31 E-value=0.00056 Score=45.88 Aligned_cols=31 Identities=32% Similarity=0.360 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17691 152 SLNNLANIKREQGYIEEATRLYLKALEVFPE 182 (673)
Q Consensus 152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~ 182 (673)
+++.+|.++..+|++++|+++|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4444455555555555555555555444444
No 314
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.30 E-value=0.0028 Score=70.48 Aligned_cols=109 Identities=15% Similarity=0.306 Sum_probs=75.2
Q ss_pred CCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691 472 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK 551 (673)
Q Consensus 472 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (673)
+...++|.||+....++++.++-.+.-|.+.+...+|.++.+...+.. ...
T Consensus 281 ~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~-------------------~~~---------- 331 (477)
T PLN02863 281 EDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESD-------------------YSN---------- 331 (477)
T ss_pred CCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccc-------------------hhh----------
Confidence 345789999999999999999999999999988888876511000000 000
Q ss_pred CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC
Q psy17691 552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 622 (673)
Q Consensus 552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g 622 (673)
.+ +.+.++.. ...+++.++.|+.+.|.. ..++.|+. ++|-+|++||+++|||+|+++-
T Consensus 332 lp----~~~~~r~~-----~~g~~v~~w~PQ~~vL~h-~~v~~fvt---H~G~nS~~Eal~~GvP~l~~P~ 389 (477)
T PLN02863 332 IP----SGFEDRVA-----GRGLVIRGWAPQVAILSH-RAVGAFLT---HCGWNSVLEGLVAGVPMLAWPM 389 (477)
T ss_pred CC----HHHHHHhc-----cCCEEecCCCCHHHHhcC-CCcCeEEe---cCCchHHHHHHHcCCCEEeCCc
Confidence 01 11222221 235788899998887763 44667764 8899999999999999999864
No 315
>PLN02562 UDP-glycosyltransferase
Probab=97.28 E-value=0.003 Score=69.80 Aligned_cols=146 Identities=14% Similarity=0.187 Sum_probs=91.7
Q ss_pred CCcEEEecCCccc-ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691 473 EDAIVYCNFNQLY-KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK 551 (673)
Q Consensus 473 ~~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (673)
+..++|.||+... .++++.++..+..+++.+.-.+|.+..+ .
T Consensus 272 ~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~---~---------------------------------- 314 (448)
T PLN02562 272 PNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPV---W---------------------------------- 314 (448)
T ss_pred CCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCC---c----------------------------------
Confidence 3468888888865 7899999999999999998777765410 0
Q ss_pred CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC--Ccchhhh
Q psy17691 552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASRV 629 (673)
Q Consensus 552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g--~~~~~r~ 629 (673)
.+ .+-.-|.+. + ++|+.+.++.|+.+.|.- ..+-.|+ .++|-.|++||+++|||+|+++- +++..
T Consensus 315 -~~----~l~~~~~~~-~-~~~~~v~~w~PQ~~iL~h-~~v~~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n-- 381 (448)
T PLN02562 315 -RE----GLPPGYVER-V-SKQGKVVSWAPQLEVLKH-QAVGCYL---THCGWNSTMEAIQCQKRLLCYPVAGDQFVN-- 381 (448)
T ss_pred -hh----hCCHHHHHH-h-ccCEEEEecCCHHHHhCC-CccceEE---ecCcchhHHHHHHcCCCEEeCCcccchHHH--
Confidence 00 010111111 2 478888899999888863 2233444 58999999999999999999853 33321
Q ss_pred HHHHHH-hcCCCccc-cCCHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691 630 AASQLA-TLGCPELI-ARTHKEYQDIAIRLGTDRDYCEKALL 669 (673)
Q Consensus 630 ~~~~l~-~~gl~~~i-a~~~~~yv~~a~~la~d~~~~~~~~~ 669 (673)
+..+. .+|+.=-+ --+.++-.+...++..|++.+++.++
T Consensus 382 -a~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r~~a~~ 422 (448)
T PLN02562 382 -CAYIVDVWKIGVRISGFGQKEVEEGLRKVMEDSGMGERLMK 422 (448)
T ss_pred -HHHHHHHhCceeEeCCCCHHHHHHHHHHHhCCHHHHHHHHH
Confidence 11221 12332111 12677755555566678777776553
No 316
>PLN02554 UDP-glycosyltransferase family protein
Probab=97.28 E-value=0.0028 Score=70.81 Aligned_cols=161 Identities=14% Similarity=0.119 Sum_probs=95.4
Q ss_pred CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691 473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF 552 (673)
Q Consensus 473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (673)
...++|.||+....++++.++..+.-|++.+.-.+|.++.+..+.. . ..... +
T Consensus 273 ~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~-~--~~~~~------------------------~ 325 (481)
T PLN02554 273 PKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIM-K--EPPGE------------------------F 325 (481)
T ss_pred CCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCccccc-c--ccccc------------------------c
Confidence 4579999999999999999999999999999877887652100000 0 00000 0
Q ss_pred ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC--CcchhhhH
Q psy17691 553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASRVA 630 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~ 630 (673)
.... +.+-.-|.++ + .+|+.+.++.|+.+.|+- ..+..|+ .++|-+|++||+++|||+|+++- +++..-
T Consensus 326 ~~~~-~~lp~~~~~r-~-~~~g~v~~W~PQ~~iL~H-~~v~~Fv---tH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na-- 396 (481)
T PLN02554 326 TNLE-EILPEGFLDR-T-KDIGKVIGWAPQVAVLAK-PAIGGFV---THCGWNSILESLWFGVPMAAWPLYAEQKFNA-- 396 (481)
T ss_pred cchh-hhCChHHHHH-h-ccCceEEeeCCHHHHhCC-cccCccc---ccCccchHHHHHHcCCCEEecCccccchhhH--
Confidence 0000 0011111111 2 367777899998888752 4455554 58899999999999999999874 333221
Q ss_pred HHHHHhcCCCccc--------------cCCHHHHHHHHHHhcC-CHHHHHHHHh
Q psy17691 631 ASQLATLGCPELI--------------ARTHKEYQDIAIRLGT-DRDYCEKALL 669 (673)
Q Consensus 631 ~~~l~~~gl~~~i--------------a~~~~~yv~~a~~la~-d~~~~~~~~~ 669 (673)
.-++..+|+.--+ .-+.++..+...++.. |++.|++.++
T Consensus 397 ~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~ 450 (481)
T PLN02554 397 FEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKE 450 (481)
T ss_pred HHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1234555543211 1155666555555554 6666666543
No 317
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=97.28 E-value=0.0036 Score=68.35 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=62.2
Q ss_pred CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccC---CH
Q psy17691 571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR---TH 647 (673)
Q Consensus 571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~ 647 (673)
+++|.+.+..|+.+.+ ..||+++ ..+|..|+.|||++|||+|.++-.. -.-..+..+...|..-.+.. +.
T Consensus 287 ~~~v~~~~~~p~~~ll---~~~d~~I---~hgG~~t~~eal~~GvP~v~~P~~~-dQ~~~a~~~~~~G~g~~l~~~~~~~ 359 (401)
T cd03784 287 PDNVRVVDFVPHDWLL---PRCAAVV---HHGGAGTTAAALRAGVPQLVVPFFG-DQPFWAARVAELGAGPALDPRELTA 359 (401)
T ss_pred CCceEEeCCCCHHHHh---hhhheee---ecCCchhHHHHHHcCCCEEeeCCCC-CcHHHHHHHHHCCCCCCCCcccCCH
Confidence 5789999998876665 4599998 6788899999999999999986532 13334556677776544432 67
Q ss_pred HHHHHHHHHhcCCHHHH
Q psy17691 648 KEYQDIAIRLGTDRDYC 664 (673)
Q Consensus 648 ~~yv~~a~~la~d~~~~ 664 (673)
++..+...++.+|..++
T Consensus 360 ~~l~~al~~~l~~~~~~ 376 (401)
T cd03784 360 ERLAAALRRLLDPPSRR 376 (401)
T ss_pred HHHHHHHHHHhCHHHHH
Confidence 77777777777764333
No 318
>KOG2053|consensus
Probab=97.28 E-value=0.064 Score=61.45 Aligned_cols=187 Identities=18% Similarity=0.123 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhhhhh
Q psy17691 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYV 80 (673)
Q Consensus 1 ~~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l~~~ 80 (673)
++.+|++...+.++..|+...+...-|.++.++|+.+++.... +...
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~L--------------------e~~~------------- 70 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLL--------------------EALY------------- 70 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHH--------------------hhhc-------------
Confidence 3667888888888888888888888888888877544332111 0000
Q ss_pred hhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691 81 SSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANI 159 (673)
Q Consensus 81 ~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~ 159 (673)
...+++...+..+ .++..++++++|..+|++++..+|+ .+..+.+-.+
T Consensus 71 ------------------------------~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFma 119 (932)
T KOG2053|consen 71 ------------------------------GLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMA 119 (932)
T ss_pred ------------------------------cCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHH
Confidence 0122333344333 3444578888888888888888888 7777777777
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHH-HHHH---------------------------------------------HHHH
Q psy17691 160 KREQGYIEEATRLYLKALEVFPEFAA-AHSN---------------------------------------------LASV 193 (673)
Q Consensus 160 ~~~~g~~~eA~~~~~~al~~~p~~~~-~~~~---------------------------------------------la~~ 193 (673)
|.+.++|.+-.+.--+..+..|+++. .|.- .-.+
T Consensus 120 yvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 77777766644444444444444321 1111 1133
Q ss_pred HHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691 194 LQQQGKLTDALLHYKEAI--RIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251 (673)
Q Consensus 194 ~~~~g~~~eA~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~ 251 (673)
+..+|++++|.+.+..-+ ++.+.+...-+.....+...+++.+-.+...+.+...+++
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 455677888887773322 2334444444555666777778877777777777777776
No 319
>KOG2610|consensus
Probab=97.27 E-value=0.0037 Score=63.64 Aligned_cols=147 Identities=13% Similarity=-0.010 Sum_probs=118.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcC
Q psy17691 123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV-FPEF---AAAHSNLASVLQQQG 198 (673)
Q Consensus 123 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~-~p~~---~~~~~~la~~~~~~g 198 (673)
...+...|++-+|....++.++..|.+.-++..--.+++..|+...-...+++.+-. +++. ..+.-.++..+...|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 344556788999999999999999999888888888899999999999999998877 6555 566667888889999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C---HHHHHHHHHHHHHcCCCc
Q psy17691 199 KLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG-F---ADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 199 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~-~---~~a~~~La~~~~~~g~~~ 269 (673)
-|++|.+..++++++++.+.-+...++.++...|++.++.++..+--..-.+ . ..-|..-+.+|.+.+.|+
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchh
Confidence 9999999999999999999999999999999999999999988764322111 1 123455677777777776
No 320
>KOG1585|consensus
Probab=97.26 E-value=0.022 Score=55.83 Aligned_cols=121 Identities=14% Similarity=0.129 Sum_probs=66.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHH
Q psy17691 120 FSYIISVLLLIQVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEV------FPEFAAAH 187 (673)
Q Consensus 120 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~ 187 (673)
+..++..+...++++|++.|++++.+-.++ .+.+...+.++.+..+|+||-..+.+-... .++....+
T Consensus 114 leKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~ 193 (308)
T KOG1585|consen 114 LEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAY 193 (308)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHH
Confidence 344555566667777777777777664332 334555566677777777776666554322 12223334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691 188 SNLASVLQQQGKLTDALLHYKEAIRI----QPSFADAYSNMGNTLKEMQDIQGALQCY 241 (673)
Q Consensus 188 ~~la~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~eA~~~~ 241 (673)
...-.++....+|..|..+|+...++ .+++...+.+|-..| ..|+.++....+
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 44444445555777777777666554 234444555554443 345555554444
No 321
>KOG0551|consensus
Probab=97.25 E-value=0.0019 Score=65.72 Aligned_cols=103 Identities=19% Similarity=0.211 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF----AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225 (673)
Q Consensus 150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 225 (673)
+.-+..-|+-|++.++|..|+.+|.++|+..-.+ ...|.|.|.+.+..|+|..|+.-+.+++.++|.+..+++.=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 4456667889999999999999999999885443 567899999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691 226 NTLKEMQDIQGALQCYSRAIQINPGFA 252 (673)
Q Consensus 226 ~~~~~~g~~~eA~~~~~~Al~l~p~~~ 252 (673)
.|+..+.++.+|..+++..++++.+..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 999999999999999999888765543
No 322
>PLN02448 UDP-glycosyltransferase family protein
Probab=97.25 E-value=0.003 Score=70.20 Aligned_cols=136 Identities=10% Similarity=0.164 Sum_probs=86.7
Q ss_pred CCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691 472 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK 551 (673)
Q Consensus 472 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (673)
+...++|.||+....++++.++..++-|+..+...+|.+..
T Consensus 272 ~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~--------------------------------------- 312 (459)
T PLN02448 272 PEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARG--------------------------------------- 312 (459)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcC---------------------------------------
Confidence 34568899999888888888888899898887766664330
Q ss_pred CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHH
Q psy17691 552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAA 631 (673)
Q Consensus 552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~ 631 (673)
+ ...+.+. ..+|+.+.++.|+.+.|.. ..+..|+ .++|..|++||+++|||+|+++--.= ...-+
T Consensus 313 -~---~~~~~~~------~~~~~~v~~w~pQ~~iL~h-~~v~~fv---tHgG~nS~~eal~~GvP~l~~P~~~D-Q~~na 377 (459)
T PLN02448 313 -E---ASRLKEI------CGDMGLVVPWCDQLKVLCH-SSVGGFW---THCGWNSTLEAVFAGVPMLTFPLFWD-QPLNS 377 (459)
T ss_pred -c---hhhHhHh------ccCCEEEeccCCHHHHhcc-CccceEE---ecCchhHHHHHHHcCCCEEecccccc-chhhH
Confidence 0 0011111 1357888899999888873 3333455 48899999999999999999874311 11112
Q ss_pred HHHHh-cCCCccc--------cCCHHHHHHHHHHhcCCH
Q psy17691 632 SQLAT-LGCPELI--------ARTHKEYQDIAIRLGTDR 661 (673)
Q Consensus 632 ~~l~~-~gl~~~i--------a~~~~~yv~~a~~la~d~ 661 (673)
..+.. +|..--+ .-+.++-.+...++..|+
T Consensus 378 ~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 378 KLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLE 416 (459)
T ss_pred HHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCC
Confidence 22322 2332211 126677777777777664
No 323
>PLN02764 glycosyltransferase family protein
Probab=97.24 E-value=0.0029 Score=69.59 Aligned_cols=157 Identities=13% Similarity=0.181 Sum_probs=94.7
Q ss_pred CCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691 472 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK 551 (673)
Q Consensus 472 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (673)
+++.|+|.||+....++++-+.-.+.-|...-.--+|++..+ .++... ...+|
T Consensus 255 ~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~-~~~~~~------------------~~~lp-------- 307 (453)
T PLN02764 255 EPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPP-RGSSTI------------------QEALP-------- 307 (453)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCC-CCCcch------------------hhhCC--------
Confidence 356799999999999888877777777666655577766511 111000 00011
Q ss_pred CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHH
Q psy17691 552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAA 631 (673)
Q Consensus 552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~ 631 (673)
+....+....| +++.++.|+.+.|+- ..++.|+ .++|..|++||+++|||+|+++-- .-....+
T Consensus 308 ------~~f~~r~~grG-----~v~~~W~PQ~~vL~h-~~v~~Fv---tH~G~nS~~Eal~~GVP~l~~P~~-~DQ~~na 371 (453)
T PLN02764 308 ------EGFEERVKGRG-----VVWGGWVQQPLILSH-PSVGCFV---SHCGFGSMWESLLSDCQIVLVPQL-GDQVLNT 371 (453)
T ss_pred ------cchHhhhccCC-----cEEeCCCCHHHHhcC-cccCeEE---ecCCchHHHHHHHcCCCEEeCCcc-cchHHHH
Confidence 12222222222 577799999888763 4455565 489999999999999999998753 1122223
Q ss_pred HHH-HhcCCCccc------cCCHHHHHHHHHHhcCCH-HHHHHHHhhh
Q psy17691 632 SQL-ATLGCPELI------ARTHKEYQDIAIRLGTDR-DYCEKALLYH 671 (673)
Q Consensus 632 ~~l-~~~gl~~~i------a~~~~~yv~~a~~la~d~-~~~~~~~~~~ 671 (673)
..+ ..+|+.--+ .-+.++-.+...++..+. +..+++|..+
T Consensus 372 ~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a 419 (453)
T PLN02764 372 RLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNH 419 (453)
T ss_pred HHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 334 334433111 126777777777777664 5556666554
No 324
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=97.23 E-value=0.0026 Score=69.79 Aligned_cols=127 Identities=9% Similarity=0.091 Sum_probs=88.8
Q ss_pred hhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhhhhhHHHHHHHcC
Q psy17691 489 PSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALG 568 (673)
Q Consensus 489 ~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 568 (673)
.+.++.+.++.+++|+..|-| +. .......|.+. .+.
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~I-ga----------------------------------------~te~s~kL~~L-~~y- 327 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHI-AA----------------------------------------LTEMSSKLMSL-DKY- 327 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEE-Ee----------------------------------------cCcccHHHHHH-Hhc-
Confidence 889999999999999999998 41 11112455555 554
Q ss_pred CCCCeEEeccCcChHHHHHhcccccEEecCCC-CCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccc-cCC
Q psy17691 569 LDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELI-ART 646 (673)
Q Consensus 569 ~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p-~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i-a~~ 646 (673)
.+-+.+.+.. ....-..|+.||++||+-. .+-+.++.||+..|+|||+..-......... . ..++ ..+
T Consensus 328 --~nvvly~~~~-~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~----~---g~l~~~~~ 397 (438)
T TIGR02919 328 --DNVKLYPNIT-TQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIA----S---ENIFEHNE 397 (438)
T ss_pred --CCcEEECCcC-hHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCccccc----C---CceecCCC
Confidence 3445555544 4556689999999999764 5669999999999999998765432221110 0 1222 257
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q psy17691 647 HKEYQDIAIRLGTDRDYCEKAL 668 (673)
Q Consensus 647 ~~~yv~~a~~la~d~~~~~~~~ 668 (673)
.++.+++.+.+.+|++.+++..
T Consensus 398 ~~~m~~~i~~lL~d~~~~~~~~ 419 (438)
T TIGR02919 398 VDQLISKLKDLLNDPNQFRELL 419 (438)
T ss_pred HHHHHHHHHHHhcCHHHHHHHH
Confidence 8999999999999997766543
No 325
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.22 E-value=0.014 Score=55.44 Aligned_cols=117 Identities=21% Similarity=0.091 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691 134 EAEECYNTALRLCPTHAD---SLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHY 207 (673)
Q Consensus 134 ~A~~~~~~al~~~p~~~~---a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~ 207 (673)
+.....++....++.... +...++..+.+.|++++|+..++.++....+. .-+-.+|+.+...+|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344444444444544422 34567888999999999999999999764443 456788999999999999999988
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691 208 KEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251 (673)
Q Consensus 208 ~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~ 251 (673)
...-..+ -.+..-...|.++...|+-++|+..|+++++.+++.
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 7542211 112345678999999999999999999999997543
No 326
>PLN02167 UDP-glycosyltransferase family protein
Probab=97.22 E-value=0.0041 Score=69.36 Aligned_cols=152 Identities=18% Similarity=0.225 Sum_probs=90.7
Q ss_pred CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691 473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF 552 (673)
Q Consensus 473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (673)
.+.++|.||+....++++.++-.+.-|++.+...+|.++.+..+.... .. | .
T Consensus 279 ~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~------------------~~-------~---l 330 (475)
T PLN02167 279 ESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASP------------------YE-------P---L 330 (475)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccch------------------hh-------h---C
Confidence 457899999988888998999999999999888888765210000000 00 0 0
Q ss_pred ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC--CcchhhhH
Q psy17691 553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASRVA 630 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~ 630 (673)
+ +.+.++ + .+|..+.++.|+.+.|+- ..++.|+ .++|-+|++||+++|||+|+++- +++..-
T Consensus 331 p----~~~~er-----~-~~rg~v~~w~PQ~~iL~h-~~vg~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na-- 394 (475)
T PLN02167 331 P----EGFMDR-----V-MGRGLVCGWAPQVEILAH-KAIGGFV---SHCGWNSVLESLWFGVPIATWPMYAEQQLNA-- 394 (475)
T ss_pred C----hHHHHH-----h-ccCeeeeccCCHHHHhcC-cccCeEE---eeCCcccHHHHHHcCCCEEeccccccchhhH--
Confidence 1 112221 1 256666799998887752 3355555 48899999999999999999854 333321
Q ss_pred HHHHHhcCCCccc----------cCCHHHHHHHHHHhcCCH-HHHHHHH
Q psy17691 631 ASQLATLGCPELI----------ARTHKEYQDIAIRLGTDR-DYCEKAL 668 (673)
Q Consensus 631 ~~~l~~~gl~~~i----------a~~~~~yv~~a~~la~d~-~~~~~~~ 668 (673)
.-++..+|..--+ .-+.++..+...++..+. +.|++.+
T Consensus 395 ~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~ 443 (475)
T PLN02167 395 FTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVK 443 (475)
T ss_pred HHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHH
Confidence 1124444433111 115666666666665433 4444433
No 327
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.22 E-value=0.0025 Score=66.00 Aligned_cols=118 Identities=16% Similarity=0.104 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691 152 SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ-QGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE 230 (673)
Q Consensus 152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 230 (673)
+|..+.....+.+..++|...|++|++..+....+|...|.+.+. .++.+.|.+.|+.+++..|.+...|..+...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 567777888888889999999999997767778999999999777 5666779999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCCc
Q psy17691 231 MQDIQGALQCYSRAIQINPGFA---DAHSNLASIHKDSGKRG 269 (673)
Q Consensus 231 ~g~~~eA~~~~~~Al~l~p~~~---~a~~~La~~~~~~g~~~ 269 (673)
.++.+.|...|++++..-+... .+|......-.+.|+.+
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~ 124 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLE 124 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HH
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998876654 57777777777777654
No 328
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.21 E-value=0.0019 Score=75.99 Aligned_cols=141 Identities=18% Similarity=0.120 Sum_probs=93.2
Q ss_pred CcEEEecCCccc--ccChhhHHHHHHHHhcccC----eeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhh
Q psy17691 474 DAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPN----SILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSIL 547 (673)
Q Consensus 474 ~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (673)
+..++++++|+. |..+..++++.++++..|+ .+|++++.+..
T Consensus 264 ~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr-------------------------------- 311 (726)
T PRK14501 264 GRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSR-------------------------------- 311 (726)
T ss_pred CCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCC--------------------------------
Confidence 566788888776 8999999999999999996 57777652100
Q ss_pred hhccCCh-hhhhhHHHHHHHc--------CCC-C-CeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhc--
Q psy17691 548 WLLKFPA-VGEANIQATAQAL--------GLD-Q-HRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWT-- 613 (673)
Q Consensus 548 ~~~~~~~-~~~~~~~~~~~~~--------g~~-~-~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~-- 613 (673)
.+ +..+.+++.+.+. |.. - ..+.|.+.+++++..++|+.+|||+-|. -.+=+.+++|||++
T Consensus 312 -----~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~ 386 (726)
T PRK14501 312 -----TGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRT 386 (726)
T ss_pred -----cchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcC
Confidence 11 2233444444332 321 1 1345778899999999999999998765 55669999999999
Q ss_pred ---CCceeecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcCCH
Q psy17691 614 ---GTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 661 (673)
Q Consensus 614 ---GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~d~ 661 (673)
|+||++-..... ..+. ..++. .|.++..+...++.+++
T Consensus 387 ~~~g~~vls~~~G~~------~~l~----~~llv~P~d~~~la~ai~~~l~~~ 429 (726)
T PRK14501 387 DGDGVLILSEMAGAA------AELA----EALLVNPNDIEGIAAAIKRALEMP 429 (726)
T ss_pred CCCceEEEecccchh------HHhC----cCeEECCCCHHHHHHHHHHHHcCC
Confidence 556665332111 1111 12332 47888888887777653
No 329
>PLN02207 UDP-glycosyltransferase
Probab=97.18 E-value=0.0038 Score=69.09 Aligned_cols=105 Identities=18% Similarity=0.323 Sum_probs=74.5
Q ss_pred CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691 473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF 552 (673)
Q Consensus 473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (673)
+..++|.||+...+++.+.++..+.-|...+...+|.++.+..... .| .
T Consensus 274 ~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~----------------------------~~---l 322 (468)
T PLN02207 274 EASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTND----------------------------DL---L 322 (468)
T ss_pred CCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCcccc----------------------------cc---C
Confidence 4579999999999999999999999999999988887651100000 00 0
Q ss_pred ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC
Q psy17691 553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 622 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g 622 (673)
+ +.+.++ + .+|+.+.++.|+.+.|+- ..+..|+ .++|-+|++||+++|||+|+++-
T Consensus 323 p----~~f~er-----~-~~~g~i~~W~PQ~~IL~H-~~vg~Fv---TH~GwnS~~Eai~~GVP~l~~P~ 378 (468)
T PLN02207 323 P----EGFLDR-----V-SGRGMICGWSPQVEILAH-KAVGGFV---SHCGWNSIVESLWFGVPIVTWPM 378 (468)
T ss_pred C----HHHHhh-----c-CCCeEEEEeCCHHHHhcc-cccceee---ecCccccHHHHHHcCCCEEecCc
Confidence 1 111111 2 367777799999988864 3344454 58899999999999999999863
No 330
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.17 E-value=0.0058 Score=67.93 Aligned_cols=118 Identities=19% Similarity=0.127 Sum_probs=95.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q psy17691 130 IQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF----AAAHSNLASVLQQQGKLTDALL 205 (673)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~ 205 (673)
...+.|.++++...+..|+..-..+..|.++...|+.++|++.|++++...... .-.++.++.++..+.+|++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 367889999999999999999999999999999999999999999988543322 4567889999999999999999
Q ss_pred HHHHHHHhCCCCH-HHHHHHHHHHHHcCCH-------HHHHHHHHHHHHh
Q psy17691 206 HYKEAIRIQPSFA-DAYSNMGNTLKEMQDI-------QGALQCYSRAIQI 247 (673)
Q Consensus 206 ~~~~al~~~p~~~-~~~~~lg~~~~~~g~~-------~eA~~~~~~Al~l 247 (673)
++.+..+.+.-.. -..+..|.|+...|+. ++|.+.|+++-.+
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 9999988765533 3456678888899988 6666666665443
No 331
>PLN00164 glucosyltransferase; Provisional
Probab=97.16 E-value=0.0029 Score=70.53 Aligned_cols=161 Identities=16% Similarity=0.245 Sum_probs=94.3
Q ss_pred CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691 473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF 552 (673)
Q Consensus 473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (673)
...++|.||+....++.+.++-.+.-|++.+...||.+..+...+ ..++ . ... .
T Consensus 271 ~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~--~~~~--------~--~~~--------------~ 324 (480)
T PLN00164 271 PASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAG--SRHP--------T--DAD--------------L 324 (480)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccc--cccc--------c--ccc--------------h
Confidence 457899999998999999999999999999888888776221000 0000 0 000 0
Q ss_pred ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecC--CCcchhhhH
Q psy17691 553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP--GETLASRVA 630 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~ 630 (673)
...-.+....+.+. .-+++.++.|+.+.|.- ..+-.|+ .++|-.|++||+++|||+|+++ ++++..
T Consensus 325 ~~~lp~~~~~~~~~-----~g~~v~~w~PQ~~iL~h-~~vg~fv---tH~GwnS~~Eai~~GVP~l~~P~~~DQ~~N--- 392 (480)
T PLN00164 325 DELLPEGFLERTKG-----RGLVWPTWAPQKEILAH-AAVGGFV---THCGWNSVLESLWHGVPMAPWPLYAEQHLN--- 392 (480)
T ss_pred hhhCChHHHHHhcC-----CCeEEeecCCHHHHhcC-cccCeEE---eecccchHHHHHHcCCCEEeCCccccchhH---
Confidence 00000112222211 12567789998888773 2233444 4789999999999999999986 333322
Q ss_pred HH-HHHhcCCCcccc--------CCHHHHHHHHHHhcCCHH-HHHHHHhhh
Q psy17691 631 AS-QLATLGCPELIA--------RTHKEYQDIAIRLGTDRD-YCEKALLYH 671 (673)
Q Consensus 631 ~~-~l~~~gl~~~ia--------~~~~~yv~~a~~la~d~~-~~~~~~~~~ 671 (673)
+. +...+|..-.+. -+.++-.+...++..|.+ ..+++|..+
T Consensus 393 a~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a 443 (480)
T PLN00164 393 AFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKA 443 (480)
T ss_pred HHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 22 334455543221 145666666667776653 345555544
No 332
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.15 E-value=0.0055 Score=68.88 Aligned_cols=139 Identities=16% Similarity=0.243 Sum_probs=94.3
Q ss_pred cEEEecCCccc---ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691 475 AIVYCNFNQLY---KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK 551 (673)
Q Consensus 475 ~~~~~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (673)
.++|.||+... ++.++.++...+.+++.|.-.+|-.+
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~---------------------------------------- 336 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYD---------------------------------------- 336 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEEC----------------------------------------
Confidence 46666666554 56788888888888888864444222
Q ss_pred CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHH
Q psy17691 552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAA 631 (673)
Q Consensus 552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~ 631 (673)
+... . .++ +++|.+.+++|+.+.|+ +..+++|+. ++|..|+.||++.|||+|.++--. =...-+
T Consensus 337 --~~~~-------~-~~~-p~Nv~i~~w~Pq~~lL~-hp~v~~fIt---HGG~~s~~Eal~~GvP~v~iP~~~-DQ~~Na 400 (507)
T PHA03392 337 --GEVE-------A-INL-PANVLTQKWFPQRAVLK-HKNVKAFVT---QGGVQSTDEAIDALVPMVGLPMMG-DQFYNT 400 (507)
T ss_pred --CCcC-------c-ccC-CCceEEecCCCHHHHhc-CCCCCEEEe---cCCcccHHHHHHcCCCEEECCCCc-cHHHHH
Confidence 0000 0 234 58899999999888774 356788864 899999999999999999987531 112223
Q ss_pred HHHHhcCCCcccc---CCHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691 632 SQLATLGCPELIA---RTHKEYQDIAIRLGTDRDYCEKALL 669 (673)
Q Consensus 632 ~~l~~~gl~~~ia---~~~~~yv~~a~~la~d~~~~~~~~~ 669 (673)
..+...|....+- -|.++..+...++.+|+..++..++
T Consensus 401 ~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~~~a~~ 441 (507)
T PHA03392 401 NKYVELGIGRALDTVTVSAAQLVLAIVDVIENPKYRKNLKE 441 (507)
T ss_pred HHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3445667653332 2677777777788889888877664
No 333
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.15 E-value=0.0037 Score=70.48 Aligned_cols=138 Identities=14% Similarity=0.308 Sum_probs=89.9
Q ss_pred CCcEEEecCCccccc-ChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691 473 EDAIVYCNFNQLYKI-DPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK 551 (673)
Q Consensus 473 ~~~~~~~~~~~~~K~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (673)
+..++|.||+...+. ..+.++..++.+++.|...+|-..
T Consensus 275 ~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~---------------------------------------- 314 (500)
T PF00201_consen 275 KKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYE---------------------------------------- 314 (500)
T ss_dssp TTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEET----------------------------------------
T ss_pred CCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccc----------------------------------------
Confidence 567899999987654 444588999999999997777443
Q ss_pred CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC--Ccchhhh
Q psy17691 552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASRV 629 (673)
Q Consensus 552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g--~~~~~r~ 629 (673)
+.... .+ ++.+.+..++|+.+.|+ +..+++|+. ++|-+|+.||++.|||+|+++- +.+ .
T Consensus 315 --~~~~~---------~l-~~n~~~~~W~PQ~~lL~-hp~v~~fit---HgG~~s~~Ea~~~gvP~l~~P~~~DQ~---~ 375 (500)
T PF00201_consen 315 --GEPPE---------NL-PKNVLIVKWLPQNDLLA-HPRVKLFIT---HGGLNSTQEALYHGVPMLGIPLFGDQP---R 375 (500)
T ss_dssp --CSHGC---------HH-HTTEEEESS--HHHHHT-STTEEEEEE---S--HHHHHHHHHCT--EEE-GCSTTHH---H
T ss_pred --ccccc---------cc-cceEEEeccccchhhhh-cccceeeee---ccccchhhhhhhccCCccCCCCcccCC---c
Confidence 10001 11 35678889999988887 555677764 8999999999999999999864 333 2
Q ss_pred HHHHHHhcCCCcccc---CCHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691 630 AASQLATLGCPELIA---RTHKEYQDIAIRLGTDRDYCEKALL 669 (673)
Q Consensus 630 ~~~~l~~~gl~~~ia---~~~~~yv~~a~~la~d~~~~~~~~~ 669 (673)
-+..+...|....+- -|.++..+...++.+|+.+++..++
T Consensus 376 na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~y~~~a~~ 418 (500)
T PF00201_consen 376 NAARVEEKGVGVVLDKNDLTEEELRAAIREVLENPSYKENAKR 418 (500)
T ss_dssp HHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred cceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence 234566667653222 2678888888888889887776654
No 334
>PLN02208 glycosyltransferase family protein
Probab=97.15 E-value=0.0053 Score=67.67 Aligned_cols=152 Identities=11% Similarity=0.208 Sum_probs=89.8
Q ss_pred CCcEEEecCCcccccChh-hHHHHHHH-HhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhc
Q psy17691 473 EDAIVYCNFNQLYKIDPS-TLQMWVNV-LKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLL 550 (673)
Q Consensus 473 ~~~~~~~~~~~~~K~~~~-~~~~~~~i-l~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (673)
++.|+|.||+...+++++ +.++...+ ....|. +|++..+ .+.... ...+
T Consensus 250 ~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf--~wv~r~~-~~~~~~------------------~~~l-------- 300 (442)
T PLN02208 250 PKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF--LIAVKPP-RGSSTV------------------QEGL-------- 300 (442)
T ss_pred CCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE--EEEEeCC-Ccccch------------------hhhC--------
Confidence 457999999999998888 67766665 666665 4554411 000000 0000
Q ss_pred cCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC--Ccchhh
Q psy17691 551 KFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASR 628 (673)
Q Consensus 551 ~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g--~~~~~r 628 (673)
+ +....+... ..+++.++.|+.+.|+- ..+..|+ .++|-+|++||+++|||+|+++- +++.
T Consensus 301 --p----~~f~~r~~~-----~g~~v~~W~PQ~~iL~H-~~v~~Fv---tHcG~nS~~Eai~~GVP~l~~P~~~DQ~~-- 363 (442)
T PLN02208 301 --P----EGFEERVKG-----RGVVWGGWVQQPLILDH-PSIGCFV---NHCGPGTIWESLVSDCQMVLIPFLSDQVL-- 363 (442)
T ss_pred --C----HHHHHHHhc-----CCcEeeccCCHHHHhcC-CccCeEE---ccCCchHHHHHHHcCCCEEecCcchhhHH--
Confidence 1 122233222 23577899999887763 3344455 48999999999999999999864 3332
Q ss_pred hHHHHHH-hcCCCcccc------CCHHHHHHHHHHhcCCH-HHHHHHHhhh
Q psy17691 629 VAASQLA-TLGCPELIA------RTHKEYQDIAIRLGTDR-DYCEKALLYH 671 (673)
Q Consensus 629 ~~~~~l~-~~gl~~~ia------~~~~~yv~~a~~la~d~-~~~~~~~~~~ 671 (673)
.+.++. .+|+.--+- -+.++-.+...++..|. +..+++|.++
T Consensus 364 -na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~ 413 (442)
T PLN02208 364 -FTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNH 413 (442)
T ss_pred -HHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 223333 355542221 15666666565666655 4556666654
No 335
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=97.13 E-value=0.0034 Score=69.68 Aligned_cols=161 Identities=14% Similarity=0.244 Sum_probs=92.4
Q ss_pred CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691 473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF 552 (673)
Q Consensus 473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (673)
.+.|+|.||+....++.+.++-.+.-|++.|...||.+..+..++.. ...+-.. +......+.+..|
T Consensus 262 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~--~~~~~~~--~~~~~~~~~~~lp--------- 328 (481)
T PLN02992 262 NESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSAC--SAYFSAN--GGETRDNTPEYLP--------- 328 (481)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccc--cccccCc--ccccccchhhhCC---------
Confidence 45799999999999999999999999999999999987522101000 0000000 0000000000000
Q ss_pred ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHH
Q psy17691 553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAAS 632 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~ 632 (673)
++..++ +.-..+++.++.|+.+.|.- ..+..|+ .++|.+|++||+++|||+|+++--. -...-+.
T Consensus 329 -----~~f~eR-----~~~rg~vv~~W~PQ~~iL~h-~~vg~Fi---tH~G~nS~~Eal~~GVP~l~~P~~~-DQ~~na~ 393 (481)
T PLN02992 329 -----EGFVSR-----THDRGFVVPSWAPQAEILAH-QAVGGFL---THCGWSSTLESVVGGVPMIAWPLFA-EQNMNAA 393 (481)
T ss_pred -----HHHHHH-----hcCCCEEEeecCCHHHHhCC-cccCeeE---ecCchhHHHHHHHcCCCEEecCccc-hhHHHHH
Confidence 122222 21124788899998887763 2222233 5899999999999999999986421 1112223
Q ss_pred HH-HhcCCCcccc-----CCHHHHHHHHHHhcCCH
Q psy17691 633 QL-ATLGCPELIA-----RTHKEYQDIAIRLGTDR 661 (673)
Q Consensus 633 ~l-~~~gl~~~ia-----~~~~~yv~~a~~la~d~ 661 (673)
.+ ..+|+.-.+. -+.++..+...++..+.
T Consensus 394 ~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 394 LLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEE 428 (481)
T ss_pred HHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCC
Confidence 33 3455543331 25666666666776653
No 336
>KOG2047|consensus
Probab=97.11 E-value=0.091 Score=58.19 Aligned_cols=154 Identities=15% Similarity=0.201 Sum_probs=90.2
Q ss_pred hcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--
Q psy17691 111 ALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRL-CPTH-----ADSLNNLANIKREQGYIEEATRLYLKALEVFPE-- 182 (673)
Q Consensus 111 ~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~-----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~-- 182 (673)
..+|++...|..... +..|+..+-+..|.+|++. +|.. ...|..+|..|...|+.+.|...|+++.+..=.
T Consensus 343 RQn~~nV~eW~kRV~-l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v 421 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK-LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV 421 (835)
T ss_pred hcCCccHHHHHhhhh-hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence 344555444433222 2245566666666666653 4432 346667777777777777777777777665422
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17691 183 --FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS------------------FADAYSNMGNTLKEMQDIQGALQCYS 242 (673)
Q Consensus 183 --~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------------------~~~~~~~lg~~~~~~g~~~eA~~~~~ 242 (673)
-..+|.+.|..-....+++.|+++.++|...-.+ +..+|..++......|-++.-...|.
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 1456666666666666777777766666543111 12355666666666666666666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHc
Q psy17691 243 RAIQINPGFADAHSNLASIHKDS 265 (673)
Q Consensus 243 ~Al~l~p~~~~a~~~La~~~~~~ 265 (673)
+.+.+.--.+....|.|..+.+.
T Consensus 502 riidLriaTPqii~NyAmfLEeh 524 (835)
T KOG2047|consen 502 RIIDLRIATPQIIINYAMFLEEH 524 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhh
Confidence 66666666666666666655443
No 337
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=97.11 E-value=0.0025 Score=70.94 Aligned_cols=106 Identities=8% Similarity=-0.001 Sum_probs=66.0
Q ss_pred hhHHHHHHHcCCC---CCe--EEeccC-cC------hHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCc
Q psy17691 558 ANIQATAQALGLD---QHR--ILFSNV-AA------KEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGET 624 (673)
Q Consensus 558 ~~~~~~~~~~g~~---~~r--v~~~~~-~~------~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~ 624 (673)
+.+...+.+.|+- .+| |+|.|. ++ ..++...|+.||+++-|. -++-|.|.+|||+||+||||-....
T Consensus 429 D~il~~~r~~~l~N~~~drVkvif~P~~L~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~g 508 (590)
T cd03793 429 DPILNHIRRIQLFNSPEDRVKVVFHPEFLSSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSG 508 (590)
T ss_pred CHHHHHHHHhcCcCCCCCeEEEEEcccccCCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcc
Confidence 4455556666654 345 577763 22 235777788999997754 5566999999999999999987765
Q ss_pred chhhhHHHHHHhcCC----Cccc--------cCCHHHHHHHHHHhcCCHHHHHHHH
Q psy17691 625 LASRVAASQLATLGC----PELI--------ARTHKEYQDIAIRLGTDRDYCEKAL 668 (673)
Q Consensus 625 ~~~r~~~~~l~~~gl----~~~i--------a~~~~~yv~~a~~la~d~~~~~~~~ 668 (673)
+..=+ -..+|- .-+| ..+.++..+...++++. +.|+.+.
T Consensus 509 f~~~v----~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m~~~~~~-~~r~~~~ 559 (590)
T cd03793 509 FGCFM----EEHIEDPESYGIYIVDRRFKSPDESVQQLTQYMYEFCQL-SRRQRII 559 (590)
T ss_pred hhhhh----HHHhccCCCceEEEecCCccchHHHHHHHHHHHHHHhCC-cHHHHHH
Confidence 53211 112221 1123 24567777777777744 4444443
No 338
>PLN02210 UDP-glucosyl transferase
Probab=97.11 E-value=0.005 Score=68.20 Aligned_cols=140 Identities=15% Similarity=0.266 Sum_probs=89.7
Q ss_pred CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691 473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF 552 (673)
Q Consensus 473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (673)
+..++|.||+...+.+++.++..+.-|+..+...+|.++.+.
T Consensus 268 ~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~-------------------------------------- 309 (456)
T PLN02210 268 RSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKE-------------------------------------- 309 (456)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCc--------------------------------------
Confidence 346899999999999999999999999999887777665100
Q ss_pred ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC--CcchhhhH
Q psy17691 553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASRVA 630 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~ 630 (673)
.+ ... ..+.+. +..+|.++.++.|+.+.|.. ..+..|+ .++|-+|++||+++|||+|+++- +++ +.
T Consensus 310 ~~---~~~-~~~~~~-~~~~~g~v~~w~PQ~~iL~h-~~vg~Fi---tH~G~nS~~Eai~~GVP~v~~P~~~DQ~---~n 377 (456)
T PLN02210 310 KA---QNV-QVLQEM-VKEGQGVVLEWSPQEKILSH-MAISCFV---THCGWNSTIETVVAGVPVVAYPSWTDQP---ID 377 (456)
T ss_pred cc---cch-hhHHhh-ccCCCeEEEecCCHHHHhcC-cCcCeEE---eeCCcccHHHHHHcCCCEEecccccccH---HH
Confidence 00 000 112221 11255566799999887763 3344555 47899999999999999999874 333 22
Q ss_pred HHHHHh-cCCCcccc-------CCHHHHHHHHHHhcCCHH
Q psy17691 631 ASQLAT-LGCPELIA-------RTHKEYQDIAIRLGTDRD 662 (673)
Q Consensus 631 ~~~l~~-~gl~~~ia-------~~~~~yv~~a~~la~d~~ 662 (673)
+..+.. +|..-.+. -+.++-.+...++..|.+
T Consensus 378 a~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~ 417 (456)
T PLN02210 378 ARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPA 417 (456)
T ss_pred HHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCch
Confidence 334443 44432221 256666666666666643
No 339
>PLN03015 UDP-glucosyl transferase
Probab=97.09 E-value=0.005 Score=68.02 Aligned_cols=117 Identities=18% Similarity=0.237 Sum_probs=76.1
Q ss_pred CCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691 472 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK 551 (673)
Q Consensus 472 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (673)
++..|+|.||+....++++.++-.+.-|...+...||.+..+......... . ....-+.+|
T Consensus 265 ~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~---------~--~~~~~~~lp-------- 325 (470)
T PLN03015 265 GERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSS---------D--DDQVSASLP-------- 325 (470)
T ss_pred CCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccc---------c--ccchhhcCC--------
Confidence 345899999999999999999999999999999999977522100000000 0 000000001
Q ss_pred CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC
Q psy17691 552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 622 (673)
Q Consensus 552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g 622 (673)
+++.++...+| +++.++.|+.+.|. +..+-.|+ .++|-+|++||+++|||+|+++-
T Consensus 326 ------~~f~er~~~rG-----l~v~~W~PQ~~vL~-h~~vg~fv---tH~GwnS~~Eai~~GvP~v~~P~ 381 (470)
T PLN03015 326 ------EGFLDRTRGVG-----LVVTQWAPQVEILS-HRSIGGFL---SHCGWSSVLESLTKGVPIVAWPL 381 (470)
T ss_pred ------hHHHHhhccCc-----eEEEecCCHHHHhc-cCccCeEE---ecCCchhHHHHHHcCCCEEeccc
Confidence 12222222222 56779999988887 34444455 47899999999999999999864
No 340
>KOG3617|consensus
Probab=97.09 E-value=0.042 Score=62.07 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=82.6
Q ss_pred ChhHHHHHHHHHH-cCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691 116 DGTTFSYIISVLL-LIQVSEAEECYNTALRLC---------------------PTHADSLNNLANIKREQGYIEEATRLY 173 (673)
Q Consensus 116 ~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~---------------------p~~~~a~~~Lg~~~~~~g~~~eA~~~~ 173 (673)
+...|..-+.|+. .|+.+.|+.+|..|-... ..+-.+.+.||..|...|++.+|+..|
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3455555555554 889999999988875542 345567889999999999999999998
Q ss_pred HHHHh------hCCCC--HHHH------------HHHHHHHHHcC-CHHHHHHHHHHH------HH--------------
Q psy17691 174 LKALE------VFPEF--AAAH------------SNLASVLQQQG-KLTDALLHYKEA------IR-------------- 212 (673)
Q Consensus 174 ~~al~------~~p~~--~~~~------------~~la~~~~~~g-~~~eA~~~~~~a------l~-------------- 212 (673)
.+|-. +..+| .+-+ ...+..|...| +...|...|-+| ++
T Consensus 991 TrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen 991 TRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence 87743 33222 1111 11233344444 455555544432 22
Q ss_pred ---hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17691 213 ---IQP-SFADAYSNMGNTLKEMQDIQGALQCYSRA 244 (673)
Q Consensus 213 ---~~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 244 (673)
++| .++..+..-+..+....+|++|...+-.+
T Consensus 1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 123 36788888889999999999998754433
No 341
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.06 E-value=0.015 Score=53.67 Aligned_cols=88 Identities=33% Similarity=0.271 Sum_probs=70.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy17691 126 VLLLIQVSEAEECYNTALRLCPTH----------------------ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF 183 (673)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~----------------------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~ 183 (673)
....++.+.++..+++++.+.... ..+...++..+...|++++|+..+++++..+|.+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~ 95 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYD 95 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Confidence 345678889999999999875221 2356677888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRI 213 (673)
Q Consensus 184 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 213 (673)
..+|..+-.+|...|+..+|++.|++..+.
T Consensus 96 E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 96 EEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999987543
No 342
>KOG0530|consensus
Probab=97.04 E-value=0.0095 Score=58.93 Aligned_cols=175 Identities=15% Similarity=0.118 Sum_probs=140.1
Q ss_pred ChhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy17691 116 DGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG-YIEEATRLYLKALEVFPEFAAAHSNLASV 193 (673)
Q Consensus 116 ~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~la~~ 193 (673)
..+.+.+..+.+. ..+-..|+++-+.++.++|.+..+|...-.++..++ +..+-++++.+.++-+|++..+|...-.+
T Consensus 42 fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~i 121 (318)
T KOG0530|consen 42 FRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVI 121 (318)
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence 3445555555554 447789999999999999999999988888776654 67888899999999999999999999999
Q ss_pred HHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCc--
Q psy17691 194 LQQQGKLT-DALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS-GKRG-- 269 (673)
Q Consensus 194 ~~~~g~~~-eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~-g~~~-- 269 (673)
....|++. .-++..+.++..+.++-.+|...-.++..-+.++.-+.+..+.++.+-.+-.+|...-.+.... |-.+
T Consensus 122 ve~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~ 201 (318)
T KOG0530|consen 122 VELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKA 201 (318)
T ss_pred HHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHH
Confidence 99999988 8899999999999999999999999999999999999999999999887777776543322221 1111
Q ss_pred ------------cccCCCCHHHHHHH-HHHhhcc
Q psy17691 270 ------------FFIRTDLNSAYFWL-LLLDAHS 290 (673)
Q Consensus 270 ------------l~l~p~~~~a~~~l-~~~~~~~ 290 (673)
+.+.|+|.+++..| |+...+.
T Consensus 202 ~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~ 235 (318)
T KOG0530|consen 202 ELERELNYTKDKILLVPNNESAWNYLKGLLELDS 235 (318)
T ss_pred HHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcc
Confidence 67889999998665 4554443
No 343
>KOG2047|consensus
Probab=97.04 E-value=0.12 Score=57.19 Aligned_cols=143 Identities=16% Similarity=0.176 Sum_probs=112.3
Q ss_pred hHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------
Q psy17691 118 TTFSYIISVL-LLIQVSEAEECYNTALRLCPTH----ADSLNNLANIKREQGYIEEATRLYLKALEVFPE---------- 182 (673)
Q Consensus 118 ~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~---------- 182 (673)
..|...+.++ ..|+.+.|...|+++++..-.. +.+|.+.|..-.+..+++.|.++.++|...-..
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4454444444 5889999999999998875332 568888898888899999999999988765211
Q ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH
Q psy17691 183 --------FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN--PGFA 252 (673)
Q Consensus 183 --------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~--p~~~ 252 (673)
+..+|..++......|-++.....|.+.+++.--.+..-.|.|..+....-+++|.+.|++.+.+. |.-.
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 135677888888888999999999999999988888899999999999999999999999988874 5556
Q ss_pred HHHHHHHH
Q psy17691 253 DAHSNLAS 260 (673)
Q Consensus 253 ~a~~~La~ 260 (673)
++|...-.
T Consensus 548 diW~tYLt 555 (835)
T KOG2047|consen 548 DIWNTYLT 555 (835)
T ss_pred HHHHHHHH
Confidence 77765443
No 344
>PLN02534 UDP-glycosyltransferase
Probab=97.02 E-value=0.0048 Score=68.76 Aligned_cols=107 Identities=17% Similarity=0.299 Sum_probs=72.9
Q ss_pred CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691 473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF 552 (673)
Q Consensus 473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (673)
...|+|.||+....++++.+.-.+.-|+..+...||.+..+...
T Consensus 282 ~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~------------------------------------ 325 (491)
T PLN02534 282 PRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKH------------------------------------ 325 (491)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccc------------------------------------
Confidence 45899999999999998888777788999999888877511000
Q ss_pred ChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccE--EecCCCCCCcchhhhhhhcCCceeecCC
Q psy17691 553 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADV--CLDTPLCNGHTTSMDVLWTGTPVVTLPG 622 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di--~Ld~~p~~g~~t~~eal~~GvPvvt~~g 622 (673)
+......+-+-|.+. +...++++.++.|+.+.|.. .++ |+ .++|.+|++||+++|||+|+++.
T Consensus 326 ~~~~~~~~p~gf~~~-~~~~g~~v~~w~pq~~iL~h---~~v~~fv---tH~G~ns~~ea~~~GvP~v~~P~ 390 (491)
T PLN02534 326 SELEEWLVKENFEER-IKGRGLLIKGWAPQVLILSH---PAIGGFL---THCGWNSTIEGICSGVPMITWPL 390 (491)
T ss_pred cchhhhcCchhhHHh-hccCCeeccCCCCHHHHhcC---CccceEE---ecCccHHHHHHHHcCCCEEeccc
Confidence 000000000112211 12356788899998887663 333 33 58999999999999999999976
No 345
>KOG1585|consensus
Probab=96.99 E-value=0.045 Score=53.77 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=96.2
Q ss_pred hHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHH
Q psy17691 118 TTFSYIISVLL-LIQVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEVF-----PEFAA 185 (673)
Q Consensus 118 ~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~-----p~~~~ 185 (673)
..+..+...++ .+++++|..++.+|.+-..++ +.++-..+.+..+...+.|+..+|++|..+. |+-..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 34555555554 789999999999999776554 3456677888889999999999999998874 44444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691 186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSF------ADAYSNMGNTLKEMQDIQGALQCYSRAI 245 (673)
Q Consensus 186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~Al 245 (673)
.-...+--..+..+.++|++.|++++.+-.++ .+.+...+.++.+..++++|-..+.+-.
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~ 177 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEG 177 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhh
Confidence 44445555566788999999999998874332 3566778889999999999988877643
No 346
>PLN02555 limonoid glucosyltransferase
Probab=96.99 E-value=0.0054 Score=68.20 Aligned_cols=152 Identities=14% Similarity=0.208 Sum_probs=92.6
Q ss_pred CcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCC
Q psy17691 474 DAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFP 553 (673)
Q Consensus 474 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (673)
..++|.||+....++++.+.-.+.-|...+...||.++... ++.
T Consensus 277 ~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~-~~~----------------------------------- 320 (480)
T PLN02555 277 SSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPH-KDS----------------------------------- 320 (480)
T ss_pred CceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCc-ccc-----------------------------------
Confidence 46899999988899998888888888888887777654110 000
Q ss_pred hhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC--CcchhhhHH
Q psy17691 554 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASRVAA 631 (673)
Q Consensus 554 ~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~ 631 (673)
......+-+-+.+ .+ .+|+.+.++.|+.+.|+ +..+..|+ .++|-.|++||+++|||+|+++- +++.. +
T Consensus 321 ~~~~~~lp~~~~~-~~-~~~g~v~~W~PQ~~iL~-H~~v~~Fv---tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~N---a 391 (480)
T PLN02555 321 GVEPHVLPEEFLE-KA-GDKGKIVQWCPQEKVLA-HPSVACFV---THCGWNSTMEALSSGVPVVCFPQWGDQVTD---A 391 (480)
T ss_pred cchhhcCChhhhh-hc-CCceEEEecCCHHHHhC-CCccCeEE---ecCCcchHHHHHHcCCCEEeCCCccccHHH---H
Confidence 0000001111111 22 46788889999888765 34566665 48899999999999999999864 33322 2
Q ss_pred HHHH-hcCCCcccc--------CCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 632 SQLA-TLGCPELIA--------RTHKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 632 ~~l~-~~gl~~~ia--------~~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
.++. .+|+.-.+. -+.++..+...++..+.+ -+++|.++
T Consensus 392 ~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~-g~~~r~ra 439 (480)
T PLN02555 392 VYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEK-AAELKQNA 439 (480)
T ss_pred HHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCch-HHHHHHHH
Confidence 2232 335443221 156666666667665532 34555544
No 347
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=96.95 E-value=0.0087 Score=65.22 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=69.8
Q ss_pred hhHHHHHHHcCCCCC-------------eEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCc
Q psy17691 558 ANIQATAQALGLDQH-------------RILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET 624 (673)
Q Consensus 558 ~~~~~~~~~~g~~~~-------------rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~ 624 (673)
+.+++.+.+.|+... .+.+.+. ..+....|..+|+++-. .||+|.|++.+|+|+|.++++.
T Consensus 252 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~l~~ADlvI~r----SGt~T~E~a~lg~P~Ilip~~~ 325 (396)
T TIGR03492 252 EKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG--RGAFAEILHWADLGIAM----AGTATEQAVGLGKPVIQLPGKG 325 (396)
T ss_pred HHHHHHHHhcCceecCCccccchhhccCceEEEec--hHhHHHHHHhCCEEEEC----cCHHHHHHHHhCCCEEEEeCCC
Confidence 445565666666421 2444332 35677888999999877 4466699999999999998653
Q ss_pred chhhhHHHHHHhc----CCCccc-cCCHHHHHHHHHHhcCCHHHHHHHH
Q psy17691 625 LASRVAASQLATL----GCPELI-ARTHKEYQDIAIRLGTDRDYCEKAL 668 (673)
Q Consensus 625 ~~~r~~~~~l~~~----gl~~~i-a~~~~~yv~~a~~la~d~~~~~~~~ 668 (673)
+ ..++.++... |-.-.+ -.+.+...+...++.+|++.+.+++
T Consensus 326 ~--q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~~~~~~~ 372 (396)
T TIGR03492 326 P--QFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPELLERCR 372 (396)
T ss_pred C--HHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 3 2355555542 433333 3457888888889999999887776
No 348
>KOG0530|consensus
Probab=96.93 E-value=0.036 Score=54.94 Aligned_cols=160 Identities=16% Similarity=0.098 Sum_probs=132.2
Q ss_pred HHHHhcCCCChhHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCC
Q psy17691 107 IFCYALSPDDGTTFSYIISVLL--LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIE-EATRLYLKALEVFPEF 183 (673)
Q Consensus 107 ~~~~~l~p~~~~~~~~~~~~~~--~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~-eA~~~~~~al~~~p~~ 183 (673)
..++.++|.+-..|.+...++. ..+..+-++++.+.++.+|++..+|...-.+....|+.. .-++..++++..+.++
T Consensus 67 ~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKN 146 (318)
T KOG0530|consen 67 EDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKN 146 (318)
T ss_pred HHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccc
Confidence 3456678888888866655543 457888999999999999999999999999999999888 8889999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE-MQ-----DIQGALQCYSRAIQINPGFADAHSN 257 (673)
Q Consensus 184 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g-----~~~eA~~~~~~Al~l~p~~~~a~~~ 257 (673)
.-+|...-.++..-+.++.-+.+..+.|+.+-.+-.+|+..-.+... .| ..+.-+.+..+.+.+.|++..+|..
T Consensus 147 YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnY 226 (318)
T KOG0530|consen 147 YHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNY 226 (318)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHH
Confidence 99999999999999999999999999999987777777654433333 12 2345567888999999999999999
Q ss_pred HHHHHHH-cC
Q psy17691 258 LASIHKD-SG 266 (673)
Q Consensus 258 La~~~~~-~g 266 (673)
|.-++.. .|
T Consensus 227 L~G~l~~d~g 236 (318)
T KOG0530|consen 227 LKGLLELDSG 236 (318)
T ss_pred HHHHHHhccC
Confidence 9888875 44
No 349
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.92 E-value=0.1 Score=54.21 Aligned_cols=131 Identities=22% Similarity=0.203 Sum_probs=105.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC------
Q psy17691 130 IQVSEAEECYNTALRLCPTHADSLNNLANIKRE----QGYIEEATRLYLKALEVFPEF-AAAHSNLASVLQQQG------ 198 (673)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~----~g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g------ 198 (673)
.+..+|..+|+.+. ...++.+.++||.+|.. ..+..+|..+|+++.+..-.. ..+.+.+|..|..-.
T Consensus 91 ~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 91 RDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred ccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 46899999999554 45788899999999987 559999999999999875444 455888888887642
Q ss_pred -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691 199 -KLTDALLHYKEAIRIQPSFADAYSNMGNTLKE----MQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267 (673)
Q Consensus 199 -~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~ 267 (673)
+...|...|.++-... ++.+..++|.+|.. ..++.+|..+|++|-+... ..+.++++ ++...|.
T Consensus 169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~ 237 (292)
T COG0790 169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGE 237 (292)
T ss_pred HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCC
Confidence 2347999999988776 78899999988865 3588999999999998876 88888998 6666663
No 350
>KOG1308|consensus
Probab=96.91 E-value=0.00087 Score=68.54 Aligned_cols=90 Identities=23% Similarity=0.267 Sum_probs=75.3
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17691 161 REQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240 (673)
Q Consensus 161 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~ 240 (673)
+..|.+++|++.|..++.++|.....|...+.++.++++...|++-|..+++++|+...-|-..|.+...+|++++|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 45677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCC
Q psy17691 241 YSRAIQINPG 250 (673)
Q Consensus 241 ~~~Al~l~p~ 250 (673)
++.+.+++-+
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 8888887643
No 351
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=96.91 E-value=0.0091 Score=65.95 Aligned_cols=148 Identities=18% Similarity=0.252 Sum_probs=90.2
Q ss_pred CCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccC
Q psy17691 473 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKF 552 (673)
Q Consensus 473 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (673)
...|+|.||+....++.+.++-.+.-|.+.|...||.+..+...+.. .
T Consensus 260 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~--------------------------------~ 307 (455)
T PLN02152 260 ESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAK--------------------------------I 307 (455)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccc--------------------------------c
Confidence 45899999999999999999999999999999989976511000000 0
Q ss_pred ChhhhhhH--HHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC--Ccchhh
Q psy17691 553 PAVGEANI--QATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASR 628 (673)
Q Consensus 553 ~~~~~~~~--~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g--~~~~~r 628 (673)
++.....+ -+-|.++ + .+|..+.++.|+.+.|+- ..+-.|+ .++|.+|++||+++|||+|+++- +++.
T Consensus 308 ~~~~~~~~~~~~~f~e~-~-~~~g~v~~W~PQ~~iL~h-~~vg~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~-- 379 (455)
T PLN02152 308 EGEEETEIEKIAGFRHE-L-EEVGMIVSWCSQIEVLRH-RAVGCFV---THCGWSSSLESLVLGVPVVAFPMWSDQPA-- 379 (455)
T ss_pred ccccccccccchhHHHh-c-cCCeEEEeeCCHHHHhCC-cccceEE---eeCCcccHHHHHHcCCCEEeccccccchH--
Confidence 00000000 0112221 2 467777799998887763 2233344 48899999999999999999864 3332
Q ss_pred hHHHHHHh---cCCCccc----cCCHHHHHHHHHHhcCCH
Q psy17691 629 VAASQLAT---LGCPELI----ARTHKEYQDIAIRLGTDR 661 (673)
Q Consensus 629 ~~~~~l~~---~gl~~~i----a~~~~~yv~~a~~la~d~ 661 (673)
.+..+.. +|+.-.. .-+.++-.+...++..|+
T Consensus 380 -na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~ 418 (455)
T PLN02152 380 -NAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK 418 (455)
T ss_pred -HHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh
Confidence 2223322 2322111 115667666666666554
No 352
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=96.90 E-value=0.01 Score=64.77 Aligned_cols=94 Identities=18% Similarity=0.313 Sum_probs=73.0
Q ss_pred CCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCcccc---
Q psy17691 568 GLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--- 644 (673)
Q Consensus 568 g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--- 644 (673)
++ ++.++..+..|+.+.+. .+|+++. .+|.+||.|||..|||+|.++.. +-.-.-+.-+..+|....+-
T Consensus 281 ~~-p~n~~v~~~~p~~~~l~---~ad~vI~---hGG~gtt~eaL~~gvP~vv~P~~-~DQ~~nA~rve~~G~G~~l~~~~ 352 (406)
T COG1819 281 NV-PDNVIVADYVPQLELLP---RADAVIH---HGGAGTTSEALYAGVPLVVIPDG-ADQPLNAERVEELGAGIALPFEE 352 (406)
T ss_pred cC-CCceEEecCCCHHHHhh---hcCEEEe---cCCcchHHHHHHcCCCEEEecCC-cchhHHHHHHHHcCCceecCccc
Confidence 44 57889999998877655 7888874 79999999999999999999886 33334667778888886554
Q ss_pred CCHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691 645 RTHKEYQDIAIRLGTDRDYCEKALL 669 (673)
Q Consensus 645 ~~~~~yv~~a~~la~d~~~~~~~~~ 669 (673)
.+++.-.+...+..+|...++..+.
T Consensus 353 l~~~~l~~av~~vL~~~~~~~~~~~ 377 (406)
T COG1819 353 LTEERLRAAVNEVLADDSYRRAAER 377 (406)
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4677777777778888888777654
No 353
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.89 E-value=0.005 Score=65.50 Aligned_cols=93 Identities=14% Similarity=0.093 Sum_probs=65.3
Q ss_pred CCeEEeccCcChHHHHHhcccccEEecCC------------CCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcC
Q psy17691 571 QHRILFSNVAAKEEHVRRGQLADVCLDTP------------LCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLG 638 (673)
Q Consensus 571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~------------p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~g 638 (673)
.++|+|.|..+.++....|.. |+.|=+. .++-+.-+.++|++|+|||+....... .++..-+
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~-----~~V~~~~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIA-----DFIVENG 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHH-----HHHHhCC
Confidence 478999999999998888776 6543211 467777899999999999996653332 3444433
Q ss_pred CCccccCCHHHHHHHHHHhcCCHHHHHHHHhhhc
Q psy17691 639 CPELIARTHKEYQDIAIRLGTDRDYCEKALLYHE 672 (673)
Q Consensus 639 l~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~~ 672 (673)
..+++++.++..++..++ +.+.+.+|+...+
T Consensus 280 -~G~~v~~~~el~~~l~~~--~~~~~~~m~~n~~ 310 (333)
T PRK09814 280 -LGFVVDSLEELPEIIDNI--TEEEYQEMVENVK 310 (333)
T ss_pred -ceEEeCCHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence 345566888888777775 4566777776543
No 354
>KOG1387|consensus
Probab=96.88 E-value=0.011 Score=60.54 Aligned_cols=157 Identities=17% Similarity=0.124 Sum_probs=114.4
Q ss_pred CcEEEecCC--cccccChhhHHHHHHHHhcccC------eeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCch
Q psy17691 474 DAIVYCNFN--QLYKIDPSTLQMWVNVLKAVPN------SILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNS 545 (673)
Q Consensus 474 ~~~~~~~~~--~~~K~~~~~~~~~~~il~~~p~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (673)
+.++..+++ |+.|.++ ++++++--+...|. .+|.++|. +|+-
T Consensus 268 r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGS------------cRne----------------- 317 (465)
T KOG1387|consen 268 RENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLEASVSPIKLIIVGS------------CRNE----------------- 317 (465)
T ss_pred cceEEEEEeecCcccccH-HHHHHHHHHhcCchhhccCCceEEEEec------------cCCh-----------------
Confidence 345555555 8889999 88988887776665 68888872 1111
Q ss_pred hhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCC-ceeecCCC
Q psy17691 546 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGT-PVVTLPGE 623 (673)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~Gv-Pvvt~~g~ 623 (673)
-+..-..+|+++.+.+.|+ +.|.|.--+|.++....++-|-|.+.+- .+.=|.+..|+|++|+ |||--.|.
T Consensus 318 ------eD~ervk~Lkd~a~~L~i~-~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgG 390 (465)
T KOG1387|consen 318 ------EDEERVKSLKDLAEELKIP-KHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGG 390 (465)
T ss_pred ------hhHHHHHHHHHHHHhcCCc-cceEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCC
Confidence 0112245778889999995 6799999999999999999999999985 6677999999999997 55555554
Q ss_pred cchhhhHHHHHHhcCC-CccccCCHHHHHHHHHHhc-CCHHHHHHHHhhh
Q psy17691 624 TLASRVAASQLATLGC-PELIARTHKEYQDIAIRLG-TDRDYCEKALLYH 671 (673)
Q Consensus 624 ~~~~r~~~~~l~~~gl-~~~ia~~~~~yv~~a~~la-~d~~~~~~~~~~~ 671 (673)
....=+ ..-.|- .++.|.|.+||++...... .|.+.|..+|.+.
T Consensus 391 P~lDIV----~~~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~A 436 (465)
T KOG1387|consen 391 PLLDIV----TPWDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNA 436 (465)
T ss_pred Cceeee----eccCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 333211 112343 4688899999999988876 4777788888765
No 355
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.88 E-value=0.042 Score=58.36 Aligned_cols=90 Identities=14% Similarity=0.085 Sum_probs=42.4
Q ss_pred HHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHc
Q psy17691 126 VLLLIQVSEAEECYNTALRL----CPTHADSLNNLANIKRE---QGYIEEATRLYLKA-LEVFPEFAAAHSNLASVLQQQ 197 (673)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~Lg~~~~~---~g~~~eA~~~~~~a-l~~~p~~~~~~~~la~~~~~~ 197 (673)
+....+|+.-+++.+..-.+ -++...+.+.+|.++.+ .|+.++|+..+..+ ....+.+++++..+|.+|...
T Consensus 151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL 230 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 33344555555544444433 23334444555555555 55555555555552 223334455555555554321
Q ss_pred ---------CCHHHHHHHHHHHHHhCC
Q psy17691 198 ---------GKLTDALLHYKEAIRIQP 215 (673)
Q Consensus 198 ---------g~~~eA~~~~~~al~~~p 215 (673)
...++|+..|.++.+.+|
T Consensus 231 ~~~s~~~d~~~ldkAi~~Y~kgFe~~~ 257 (374)
T PF13281_consen 231 FLESNFTDRESLDKAIEWYRKGFEIEP 257 (374)
T ss_pred HHHcCccchHHHHHHHHHHHHHHcCCc
Confidence 124455555555555553
No 356
>KOG0551|consensus
Probab=96.86 E-value=0.015 Score=59.39 Aligned_cols=96 Identities=19% Similarity=0.098 Sum_probs=86.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17691 121 SYIISVLLLIQVSEAEECYNTALRLCPTH----ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ 196 (673)
Q Consensus 121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 196 (673)
..++-+++.++|..|+.+|.+.|+..-.+ +..|.|.|-+....|+|..|+....+++.++|.+..+++.-|.+++.
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 34566788899999999999999986544 45788999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q psy17691 197 QGKLTDALLHYKEAIRIQPS 216 (673)
Q Consensus 197 ~g~~~eA~~~~~~al~~~p~ 216 (673)
+.++.+|...++..++++.+
T Consensus 166 Le~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHhhhhhhhHH
Confidence 99999999999998877654
No 357
>KOG2796|consensus
Probab=96.86 E-value=0.023 Score=56.30 Aligned_cols=119 Identities=14% Similarity=0.106 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHH
Q psy17691 151 DSLNNLANIKREQGYIEEATRLYLKALEVF-PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ------PSFADAYSN 223 (673)
Q Consensus 151 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~ 223 (673)
.+.+.+..++.-.|+|.-....+.+.++.+ |..+.....||.+..+.|+.+.|..++++.-+.+ .....++.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 467788889999999999999999999998 6678889999999999999999999999654432 233557788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 224 MGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 224 lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
.+.++.-.+++.+|...|.++++.||.++.+..+-+.|+.-+|+..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~ 303 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLK 303 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998875
No 358
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.83 E-value=0.0021 Score=43.11 Aligned_cols=32 Identities=31% Similarity=0.738 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691 219 DAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250 (673)
Q Consensus 219 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~ 250 (673)
.+|+.+|.+|.++|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35566666666666666666666666666653
No 359
>PLN03007 UDP-glucosyltransferase family protein
Probab=96.83 E-value=0.0099 Score=66.51 Aligned_cols=109 Identities=14% Similarity=0.203 Sum_probs=71.1
Q ss_pred CCCcEEEecCCcccccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhcc
Q psy17691 472 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK 551 (673)
Q Consensus 472 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (673)
+...++|.||+....+++..+.-.+.-|...+...+|.++.+...
T Consensus 283 ~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~----------------------------------- 327 (482)
T PLN03007 283 KPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQ----------------------------------- 327 (482)
T ss_pred CCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcc-----------------------------------
Confidence 345799999999888877777777777888888788876621000
Q ss_pred CChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC
Q psy17691 552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 622 (673)
Q Consensus 552 ~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g 622 (673)
+.....+-.-|.++- ....+++.++.|+.+.|.. ..+..|+ .++|-+|++||+++|||+|+++-
T Consensus 328 --~~~~~~lp~~~~~r~-~~~g~~v~~w~PQ~~iL~h-~~v~~fv---tH~G~nS~~Eal~~GVP~v~~P~ 391 (482)
T PLN03007 328 --GEKEEWLPEGFEERT-KGKGLIIRGWAPQVLILDH-QATGGFV---THCGWNSLLEGVAAGLPMVTWPV 391 (482)
T ss_pred --cchhhcCCHHHHHHh-ccCCEEEecCCCHHHHhcc-Cccceee---ecCcchHHHHHHHcCCCeeeccc
Confidence 000000111112211 1356888999998887763 2233354 48899999999999999999863
No 360
>KOG1308|consensus
Probab=96.75 E-value=0.00056 Score=69.87 Aligned_cols=93 Identities=18% Similarity=0.064 Sum_probs=84.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17691 124 ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDA 203 (673)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 203 (673)
...+..|.+++|++.|..+++++|..+..+...+.++.++++...|+..+..+++++|+...-|-..|.....+|++++|
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 34556789999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred HHHHHHHHHhCCC
Q psy17691 204 LLHYKEAIRIQPS 216 (673)
Q Consensus 204 ~~~~~~al~~~p~ 216 (673)
...+..+++++-+
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 9999999887644
No 361
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.66 E-value=0.18 Score=53.29 Aligned_cols=117 Identities=12% Similarity=0.088 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHH
Q psy17691 132 VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ---QGKLTDALLHYK 208 (673)
Q Consensus 132 ~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~eA~~~~~ 208 (673)
.+.-+.+|++|++.+|++...+..+-....+..+-++..+-+++++..+|++...|..+-..... .-.+++....|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 56778889999999999999988888888888899999999999999999999888766554443 335778888888
Q ss_pred HHHHhCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691 209 EAIRIQPS------------------FADAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248 (673)
Q Consensus 209 ~al~~~p~------------------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~ 248 (673)
++++.-.. ...+...+...+.+.|..+.|+..++-.++++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 87765110 12356778888899999999999999999875
No 362
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=96.66 E-value=0.02 Score=61.14 Aligned_cols=106 Identities=16% Similarity=0.210 Sum_probs=85.3
Q ss_pred hhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcc---hhhhHHHH
Q psy17691 557 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETL---ASRVAASQ 633 (673)
Q Consensus 557 ~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~~~ 633 (673)
.+.++....+.|+ +.+.+.. +++..+|..+|+++. -.|++|..|.++.|+|+|..+-+.- .....|-.
T Consensus 224 ~~~~~~~~~~~~~----~~v~~f~--~dm~~~~~~ADLvIs---RaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~ 294 (357)
T COG0707 224 LEELKSAYNELGV----VRVLPFI--DDMAALLAAADLVIS---RAGALTIAELLALGVPAILVPYPPGADGHQEYNAKF 294 (357)
T ss_pred HHHHHHHHhhcCc----EEEeeHH--hhHHHHHHhccEEEe---CCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHH
Confidence 4566666677776 5555543 467888899999986 6899999999999999999877765 66778889
Q ss_pred HHhcCCCccccC---CHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 634 LATLGCPELIAR---THKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 634 l~~~gl~~~ia~---~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
|...|..-++.+ |.+..++...++.++++.+++|++..
T Consensus 295 l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a 335 (357)
T COG0707 295 LEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENA 335 (357)
T ss_pred HHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999888765543 57899999999999999999997754
No 363
>KOG4507|consensus
Probab=96.62 E-value=0.0047 Score=67.04 Aligned_cols=109 Identities=23% Similarity=0.277 Sum_probs=95.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691 155 NLANIKREQGYIEEATRLYLKALEVFPEFA-AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD 233 (673)
Q Consensus 155 ~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 233 (673)
.-|..+.-+|+...|++++..|+...|... ....+|+.++...|-...|-..+.+++.++...+-.++.+|+.+..+.+
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence 334555678999999999999999998764 4578999999999999999999999999998888999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691 234 IQGALQCYSRAIQINPGFADAHSNLASIHK 263 (673)
Q Consensus 234 ~~eA~~~~~~Al~l~p~~~~a~~~La~~~~ 263 (673)
.++|++.|++|++++|+++.....|-.+-.
T Consensus 692 i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999999988877766544
No 364
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=96.59 E-value=0.021 Score=63.31 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=81.6
Q ss_pred ccccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccC----eeEEeeccCCcCCCCCCCCcccccCCCCccchh
Q psy17691 464 TSRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPN----SILWLLKFPAVGEANISRPLFRPRLRPSASTSI 537 (673)
Q Consensus 464 ~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (673)
..|+++| +..++.++.|+. |-.+.-++++.++|++.|+ .+|++++.|..++
T Consensus 277 ~lr~~~~---~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~-------------------- 333 (487)
T TIGR02398 277 RIRSELA---GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASG-------------------- 333 (487)
T ss_pred HHHHHcC---CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCccc--------------------
Confidence 4667777 566777788876 9999999999999999996 6788776321111
Q ss_pred hhhccCchhhhhccCChhhhhhHHHH-------HHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCC-CCcchhhh
Q psy17691 538 VLKAVPNSILWLLKFPAVGEANIQAT-------AQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMD 609 (673)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~-~g~~t~~e 609 (673)
++. -..-+..+.+. +...|.. ..+.|.+.++.++..++|+.+||+|.|.-. +=+.++.|
T Consensus 334 ----v~~--------y~~l~~~v~~~v~~IN~~fg~~~~~-pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~E 400 (487)
T TIGR02398 334 ----MTI--------YDELQGQIEQAVGRINGRFARIGWT-PLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKE 400 (487)
T ss_pred ----chH--------HHHHHHHHHHHHHHHhhccCCCCCc-cEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhh
Confidence 000 00012222222 2223542 456778899999999999999999998755 45999999
Q ss_pred hhhcCC
Q psy17691 610 VLWTGT 615 (673)
Q Consensus 610 al~~Gv 615 (673)
.++++.
T Consensus 401 yva~~~ 406 (487)
T TIGR02398 401 YVAAQG 406 (487)
T ss_pred HHhhhc
Confidence 999987
No 365
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=96.55 E-value=0.0055 Score=51.73 Aligned_cols=71 Identities=13% Similarity=0.064 Sum_probs=51.3
Q ss_pred EecCC-CCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHHhhh
Q psy17691 595 CLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKALLYH 671 (673)
Q Consensus 595 ~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~~~~ 671 (673)
+|.+- ..+-++..+|+|++|+|||+-.-..+.. +-.-|..-+...|.++.+++...|.+|++.++++++..
T Consensus 2 ~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~------~~~~~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a 73 (92)
T PF13524_consen 2 NLNPSRSDGPNMRIFEAMACGTPVISDDSPGLRE------IFEDGEHIITYNDPEELAEKIEYLLENPEERRRIAKNA 73 (92)
T ss_pred EeeCCCCCCCchHHHHHHHCCCeEEECChHHHHH------HcCCCCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 45543 2445789999999999999965421111 11114445666799999999999999999999998764
No 366
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.55 E-value=0.0042 Score=41.57 Aligned_cols=30 Identities=40% Similarity=0.499 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17691 152 SLNNLANIKREQGYIEEATRLYLKALEVFP 181 (673)
Q Consensus 152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p 181 (673)
+++.+|.+|..+|++++|+++|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344444444444444444444444444444
No 367
>KOG4507|consensus
Probab=96.52 E-value=0.0072 Score=65.66 Aligned_cols=97 Identities=24% Similarity=0.340 Sum_probs=57.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691 129 LIQVSEAEECYNTALRLCPTHAD-SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHY 207 (673)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~-a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 207 (673)
.|+...|+.|++.|+-..|.... ...+||+++...|-...|-..+.+++.+....+..++.+|+.+..+.+.+.|++.+
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 45666666666666665554332 34556666666665566666666666666555556666666666666666666666
Q ss_pred HHHHHhCCCCHHHHHHHH
Q psy17691 208 KEAIRIQPSFADAYSNMG 225 (673)
Q Consensus 208 ~~al~~~p~~~~~~~~lg 225 (673)
++|++++|+++++-..|-
T Consensus 700 ~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 700 RQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHhcCCCChhhHHHHH
Confidence 666666666655554443
No 368
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=96.52 E-value=0.034 Score=59.95 Aligned_cols=85 Identities=11% Similarity=0.094 Sum_probs=59.1
Q ss_pred CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHHhcCCCcc-ccCCHHH
Q psy17691 571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPEL-IARTHKE 649 (673)
Q Consensus 571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~-ia~~~~~ 649 (673)
.++|.+.+.++..+++.++..||+++ -+++...-||..+|+|||++.+ +.-+|. .|-.-+ |-.+.++
T Consensus 261 ~~~v~l~~~l~~~~~l~Ll~~a~~vi----tdSSggi~EA~~lg~Pvv~l~~-R~e~~~-------~g~nvl~vg~~~~~ 328 (365)
T TIGR03568 261 HPNFRLFKSLGQERYLSLLKNADAVI----GNSSSGIIEAPSFGVPTINIGT-RQKGRL-------RADSVIDVDPDKEE 328 (365)
T ss_pred CCCEEEECCCChHHHHHHHHhCCEEE----EcChhHHHhhhhcCCCEEeecC-Cchhhh-------hcCeEEEeCCCHHH
Confidence 36899999999999999999999998 2222334899999999999864 333331 133333 4457788
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q psy17691 650 YQDIAIRLGTDRDYCEKAL 668 (673)
Q Consensus 650 yv~~a~~la~d~~~~~~~~ 668 (673)
-++.+.+ +.+++.++.+.
T Consensus 329 I~~a~~~-~~~~~~~~~~~ 346 (365)
T TIGR03568 329 IVKAIEK-LLDPAFKKSLK 346 (365)
T ss_pred HHHHHHH-HhChHHHHHHh
Confidence 8776666 55655544443
No 369
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.51 E-value=0.073 Score=59.27 Aligned_cols=139 Identities=17% Similarity=0.052 Sum_probs=106.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HH-HHH----HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17691 129 LIQVSEAEECYNTALRLCPTHADSLNNL-------AN-IKR----EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ 196 (673)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~a~~~L-------g~-~~~----~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 196 (673)
.|+-+.++..+.++.+. .+--.....+ .. .+. ...+.+.|.+.++...+..|+..-..+..|.++..
T Consensus 201 ~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred CCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 58999999999999873 3321111111 11 111 34578899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCC
Q psy17691 197 QGKLTDALLHYKEAIRIQPSF----ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA-DAHSNLASIHKDSGKR 268 (673)
Q Consensus 197 ~g~~~eA~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~-~a~~~La~~~~~~g~~ 268 (673)
.|+.++|++.|++++...... .-+++.+|.++..++++++|..+|.+..+.+.-.. -..+..|.|+...|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 999999999999998543332 23678899999999999999999999998655433 3344567778888775
No 370
>KOG2610|consensus
Probab=96.46 E-value=0.051 Score=55.66 Aligned_cols=117 Identities=19% Similarity=0.049 Sum_probs=103.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHH
Q psy17691 153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI-QPSF---ADAYSNMGNTL 228 (673)
Q Consensus 153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~---~~~~~~lg~~~ 228 (673)
...-+.++...|++.+|...+++.++-.|.+.-++..--.+++..|+...-...+++.+.. +++- ..++-.++..+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3344566777899999999999999999999988888888999999999999999999987 6665 56677889999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 229 KEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 229 ~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
.+.|-|++|.+.-++++++++.+.-+...++.++...|++.
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~K 226 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHK 226 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhh
Confidence 99999999999999999999999999999999998888876
No 371
>KOG3617|consensus
Probab=96.45 E-value=0.06 Score=60.90 Aligned_cols=116 Identities=24% Similarity=0.227 Sum_probs=80.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HhhCCC----------CHHHHH
Q psy17691 129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKA----------LEVFPE----------FAAAHS 188 (673)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~a----------l~~~p~----------~~~~~~ 188 (673)
.|.+++|.+..+.-=++ .--..|++.|.-+...++.+.|+++|+++ |.-+|. +...|.
T Consensus 839 ~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~ 916 (1416)
T KOG3617|consen 839 QGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYS 916 (1416)
T ss_pred cccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHH
Confidence 55555555443321111 11346788888888888888888888876 222332 345677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691 189 NLASVLQQQGKLTDALLHYKEAIRI---------------------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQ 246 (673)
Q Consensus 189 ~la~~~~~~g~~~eA~~~~~~al~~---------------------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 246 (673)
..|..+...|+.+.|+.+|..|-.. ...+..+.+.+|..|...|++.+|+..|.+|-.
T Consensus 917 WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 917 WWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 7788888888888888888876443 234566888999999999999999998887643
No 372
>KOG3824|consensus
Probab=96.36 E-value=0.0086 Score=60.33 Aligned_cols=64 Identities=22% Similarity=0.338 Sum_probs=35.4
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17691 162 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225 (673)
Q Consensus 162 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 225 (673)
+.|+.++|...|+.|++++|.+++++..+|......++.-+|-.+|-+|+.++|.+.+++.|.+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 4455555555555555555555555555555555555555555555555555555555555544
No 373
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=96.35 E-value=0.026 Score=60.25 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=84.0
Q ss_pred CCCcEEEecCCcccccC-hhh----HHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchh
Q psy17691 472 PEDAIVYCNFNQLYKID-PST----LQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSI 546 (673)
Q Consensus 472 ~~~~~~~~~~~~~~K~~-~~~----~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (673)
..+.+++.++.+..... ++. .++..++.+. ++..+++.-+ |
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~-~~~~vi~~~h-------------------------------n-- 223 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAER-QNVPVIFPLH-------------------------------N-- 223 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH-TTEEEEEE---------------------------------S--
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc-CCCcEEEEec-------------------------------C--
Confidence 55677888888888777 534 4444444444 5555555431 1
Q ss_pred hhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhh-hhhhcCCceeecC--CC
Q psy17691 547 LWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSM-DVLWTGTPVVTLP--GE 623 (673)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~-eal~~GvPvvt~~--g~ 623 (673)
...+...+.+.+.+. +++.+.+.+++.+|+.+++.+|+++- +.| +.. ||.++|+|||++. |+
T Consensus 224 ------~p~~~~~i~~~l~~~----~~v~~~~~l~~~~~l~ll~~a~~vvg----dSs-GI~eEa~~lg~P~v~iR~~ge 288 (346)
T PF02350_consen 224 ------NPRGSDIIIEKLKKY----DNVRLIEPLGYEEYLSLLKNADLVVG----DSS-GIQEEAPSLGKPVVNIRDSGE 288 (346)
T ss_dssp -------HHHHHHHHHHHTT-----TTEEEE----HHHHHHHHHHESEEEE----SSH-HHHHHGGGGT--EEECSSS-S
T ss_pred ------CchHHHHHHHHhccc----CCEEEECCCCHHHHHHHHhcceEEEE----cCc-cHHHHHHHhCCeEEEecCCCC
Confidence 134555665555554 39999999999999999999999963 345 777 9999999999995 55
Q ss_pred cchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhcCCHHHHHHHH
Q psy17691 624 TLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDYCEKAL 668 (673)
Q Consensus 624 ~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~d~~~~~~~~ 668 (673)
+..+|.. |-.-+|..+.++-.+.+.+...+.+.+..+.
T Consensus 289 Rqe~r~~-------~~nvlv~~~~~~I~~ai~~~l~~~~~~~~~~ 326 (346)
T PF02350_consen 289 RQEGRER-------GSNVLVGTDPEAIIQAIEKALSDKDFYRKLK 326 (346)
T ss_dssp -HHHHHT-------TSEEEETSSHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CHHHHhh-------cceEEeCCCHHHHHHHHHHHHhChHHHHhhc
Confidence 5555442 3344555567777666666666666666654
No 374
>KOG2471|consensus
Probab=96.29 E-value=0.014 Score=62.39 Aligned_cols=111 Identities=14% Similarity=0.046 Sum_probs=89.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------C-
Q psy17691 120 FSYIISVLLLIQVSEAEECYNTA-LRLCPT--------HADSLNNLANIKREQGYIEEATRLYLKALEV---------F- 180 (673)
Q Consensus 120 ~~~~~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~---------~- 180 (673)
+......|..|++.+|.+.+... +...|. .-..|+++|.++++.|.|.-+..+|.+|++. .
T Consensus 244 ~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~ 323 (696)
T KOG2471|consen 244 LLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKP 323 (696)
T ss_pred HHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 34456667799999998876543 222232 1235789999999999999999999999961 1
Q ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691 181 --------PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE 230 (673)
Q Consensus 181 --------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 230 (673)
-...+..+|.|..|...|+.-.|.++|.++.+..-.++..|..++.|+..
T Consensus 324 ~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 324 AKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred CcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 12367899999999999999999999999999999999999999999865
No 375
>KOG3824|consensus
Probab=96.23 E-value=0.014 Score=58.81 Aligned_cols=71 Identities=30% Similarity=0.459 Sum_probs=64.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691 190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLAS 260 (673)
Q Consensus 190 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~ 260 (673)
.+.-..+.|+.++|...|+.|+.+.|.+++++..+|......++.-+|-++|-+|+.++|.+.+++.|.+.
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34445678999999999999999999999999999999999999999999999999999999999887654
No 376
>KOG1550|consensus
Probab=96.22 E-value=0.21 Score=56.91 Aligned_cols=153 Identities=16% Similarity=0.074 Sum_probs=93.3
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHH------cCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-----CHH
Q psy17691 104 RVEIFCYALSPDDGTTFSYIISVLL------LIQVSEAEECYNTALRL-----CPTHADSLNNLANIKREQG-----YIE 167 (673)
Q Consensus 104 a~~~~~~~l~p~~~~~~~~~~~~~~------~g~~~~A~~~~~~al~~-----~p~~~~a~~~Lg~~~~~~g-----~~~ 167 (673)
+...+.......+......++.++. ..+.+.|+.+|+.+.+. .-.++.+.+.+|.+|.+.. +.+
T Consensus 231 a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~ 310 (552)
T KOG1550|consen 231 AFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYE 310 (552)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHH
Confidence 3344444444444444444433332 23777788877777661 1124556777777777642 567
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q psy17691 168 EATRLYLKALEVFPEFAAAHSNLASVLQQQG---KLTDALLHYKEAIRIQPSFADAYSNMGNTLKE----MQDIQGALQC 240 (673)
Q Consensus 168 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~ 240 (673)
.|..+|.++-+. +++.+.+.+|.++.... ++..|.++|..|.+. .+..+.+++|.||.. .-+...|..+
T Consensus 311 ~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 311 KALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred HHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 777777777665 34556677777776554 466777777777654 346677777777754 2466777788
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH
Q psy17691 241 YSRAIQINPGFADAHSNLASIH 262 (673)
Q Consensus 241 ~~~Al~l~p~~~~a~~~La~~~ 262 (673)
|+++-+.. ++.+.+.++.++
T Consensus 387 ~k~aA~~g--~~~A~~~~~~~~ 406 (552)
T KOG1550|consen 387 YKKAAEKG--NPSAAYLLGAFY 406 (552)
T ss_pred HHHHHHcc--ChhhHHHHHHHH
Confidence 88777766 455555555544
No 377
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=96.19 E-value=0.13 Score=54.94 Aligned_cols=159 Identities=20% Similarity=0.146 Sum_probs=102.2
Q ss_pred ccccccCCCCCcEEEecCCcccccChh-hHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhcc
Q psy17691 464 TSRQQYGLPEDAIVYCNFNQLYKIDPS-TLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAV 542 (673)
Q Consensus 464 ~~r~~~~l~~~~~~~~~~~~~~K~~~~-~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (673)
..|.+++.+...++++|- ..-.++ .++++.+++++.||..++++..
T Consensus 222 ~~r~~l~~~r~v~iaaST---H~GEeei~l~~~~~l~~~~~~~llIlVPR------------------------------ 268 (419)
T COG1519 222 ALRRQLGGHRPVWVAAST---HEGEEEIILDAHQALKKQFPNLLLILVPR------------------------------ 268 (419)
T ss_pred HHHHhcCCCCceEEEecC---CCchHHHHHHHHHHHHhhCCCceEEEecC------------------------------
Confidence 456667766445566653 444444 5899999999999999998761
Q ss_pred CchhhhhccCChhhhhhHHHHHHHcCCCCC------------eEEeccCcChHHHHHhcccccEEe-c-CCCCCCcchhh
Q psy17691 543 PNSILWLLKFPAVGEANIQATAQALGLDQH------------RILFSNVAAKEEHVRRGQLADVCL-D-TPLCNGHTTSM 608 (673)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------rv~~~~~~~~~~~~~~~~~~Di~L-d-~~p~~g~~t~~ 608 (673)
+..--..+.+.++.+|+.-. .|.+.. +..|...+|..+||+. - ||--.||.-.+
T Consensus 269 ----------HpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~D--tmGEL~l~y~~adiAFVGGSlv~~GGHN~L 336 (419)
T COG1519 269 ----------HPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGD--TMGELGLLYGIADIAFVGGSLVPIGGHNPL 336 (419)
T ss_pred ----------ChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEe--cHhHHHHHHhhccEEEECCcccCCCCCChh
Confidence 11122456666777776422 222222 2468899999999994 3 77448889999
Q ss_pred hhhhcCCceeecCCCcchhhhHHHHHHhcCCCccccCCHHHHHHHHHHhc-CCHHHHHHHHhh
Q psy17691 609 DVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLG-TDRDYCEKALLY 670 (673)
Q Consensus 609 eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la-~d~~~~~~~~~~ 670 (673)
|++++|+|||+=+--.-.+-....+++ .|-- +++++ ++.+..++.+- .|++.|.++...
T Consensus 337 Epa~~~~pvi~Gp~~~Nf~ei~~~l~~-~ga~-~~v~~-~~~l~~~v~~l~~~~~~r~~~~~~ 396 (419)
T COG1519 337 EPAAFGTPVIFGPYTFNFSDIAERLLQ-AGAG-LQVED-ADLLAKAVELLLADEDKREAYGRA 396 (419)
T ss_pred hHHHcCCCEEeCCccccHHHHHHHHHh-cCCe-EEECC-HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999983222223333333333 3322 44455 66777777655 558888887543
No 378
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=96.16 E-value=0.032 Score=59.83 Aligned_cols=135 Identities=18% Similarity=0.153 Sum_probs=87.7
Q ss_pred ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhhhhhHHHHHH
Q psy17691 486 KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQ 565 (673)
Q Consensus 486 K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (673)
++.|.++++-.++.++.|+-++++-. .+....+.+++.+.
T Consensus 200 rllP~~l~aa~~l~~~~p~l~fvvp~----------------------------------------a~~~~~~~i~~~~~ 239 (373)
T PF02684_consen 200 RLLPIFLEAAKLLKKQRPDLQFVVPV----------------------------------------APEVHEELIEEILA 239 (373)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEec----------------------------------------CCHHHHHHHHHHHH
Confidence 66789999999999999999998643 12233344556666
Q ss_pred HcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcch-hhhHHHHHH--hcCCCcc
Q psy17691 566 ALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLA-SRVAASQLA--TLGCPEL 642 (673)
Q Consensus 566 ~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~-~r~~~~~l~--~~gl~~~ 642 (673)
..+.+..-++..+ +-...++.+|++|- ..||.|+|+..+|+|.|...--+.. -.++-.+++ -+||+.+
T Consensus 240 ~~~~~~~~~~~~~-----~~~~~m~~ad~al~----~SGTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Ni 310 (373)
T PF02684_consen 240 EYPPDVSIVIIEG-----ESYDAMAAADAALA----ASGTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNI 310 (373)
T ss_pred hhCCCCeEEEcCC-----chHHHHHhCcchhh----cCCHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhh
Confidence 6655433222222 33445667998885 4699999999999997766544332 223333322 2466555
Q ss_pred ccC------------CHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691 643 IAR------------THKEYQDIAIRLGTDRDYCEKALL 669 (673)
Q Consensus 643 ia~------------~~~~yv~~a~~la~d~~~~~~~~~ 669 (673)
++. |++.-.+.+..+..|.+.+.....
T Consensus 311 ia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~ 349 (373)
T PF02684_consen 311 IAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKE 349 (373)
T ss_pred hcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 543 678888888889999987655443
No 379
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.11 E-value=0.078 Score=56.37 Aligned_cols=118 Identities=17% Similarity=0.194 Sum_probs=96.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHH
Q psy17691 149 HADSLNNLANIKREQGYIEEATRLYLKALEV----FPEFAAAHSNLASVLQQ---QGKLTDALLHYKE-AIRIQPSFADA 220 (673)
Q Consensus 149 ~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~eA~~~~~~-al~~~p~~~~~ 220 (673)
++++..++=..|....+|+.-++..+..-.+ -++...+.+.+|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3567778888899999999999999887766 45667888899999998 9999999999999 44556788999
Q ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691 221 YSNMGNTLKEM---------QDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267 (673)
Q Consensus 221 ~~~lg~~~~~~---------g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~ 267 (673)
+..+|.+|..+ ...++|+.+|+++.+++|+. ..=.|++.++...|.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence 99999998753 35789999999999999654 444577777776665
No 380
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.10 E-value=0.011 Score=40.46 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691 221 YSNMGNTLKEMQDIQGALQCYSRAIQ 246 (673)
Q Consensus 221 ~~~lg~~~~~~g~~~eA~~~~~~Al~ 246 (673)
+.+||.+|.++|++++|+++|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666666666666443
No 381
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.09 E-value=0.66 Score=48.77 Aligned_cols=153 Identities=14% Similarity=0.054 Sum_probs=106.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCH-----HHHHHHHHHHHHcCC
Q psy17691 128 LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV---FPEFA-----AAHSNLASVLQQQGK 199 (673)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~---~p~~~-----~~~~~la~~~~~~g~ 199 (673)
..|..+.|+.+-+++-...|.-+.++...-......|+++.|++..+...+. .++.. ..+...+.... .-+
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCC
Confidence 3788888888888888888888887777777777888888888888766543 22221 11222222222 235
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc----------
Q psy17691 200 LTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG---------- 269 (673)
Q Consensus 200 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~---------- 269 (673)
...|.....+++++.|+...+-..-+..+.+.|+..++-..++.+.+.+|. ++++. ..++.+.|+..
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~--lY~~ar~gdta~dRlkRa~~L 321 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIAL--LYVRARSGDTALDRLKRAKKL 321 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHH--HHHHhcCCCcHHHHHHHHHHH
Confidence 677888888888888888888888888888889999998888888888875 44332 23444555543
Q ss_pred cccCCCCHHHHHHHH
Q psy17691 270 FFIRTDLNSAYFWLL 284 (673)
Q Consensus 270 l~l~p~~~~a~~~l~ 284 (673)
-.+.|+|.+..+..+
T Consensus 322 ~slk~nnaes~~~va 336 (531)
T COG3898 322 ESLKPNNAESSLAVA 336 (531)
T ss_pred HhcCccchHHHHHHH
Confidence 356788877665544
No 382
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.08 E-value=0.88 Score=47.16 Aligned_cols=147 Identities=19% Similarity=0.117 Sum_probs=111.0
Q ss_pred chhHHHHHHHhcCCCChhHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------CHH
Q psy17691 101 NKSRVEIFCYALSPDDGTTFSYIISVLLLI-----QVSEAEECYNTALRLCPTH-ADSLNNLANIKREQG-------YIE 167 (673)
Q Consensus 101 ~~~a~~~~~~~l~p~~~~~~~~~~~~~~~g-----~~~~A~~~~~~al~~~p~~-~~a~~~Lg~~~~~~g-------~~~ 167 (673)
...++..+....+.........++..+..| +..+|..+|+++.+..-.. ..+.+.+|..|..-. +..
T Consensus 93 ~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~ 172 (292)
T COG0790 93 KTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDK 172 (292)
T ss_pred HHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHH
Confidence 345566666666677777776676666543 8999999999999874333 344888888887642 334
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------
Q psy17691 168 EATRLYLKALEVFPEFAAAHSNLASVLQQ----QGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ----------- 232 (673)
Q Consensus 168 eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g----------- 232 (673)
.|...|.++-... +..+..++|.+|.. ..++++|...|+++-+... ...+++++ ++...|
T Consensus 173 ~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~ 247 (292)
T COG0790 173 KALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTA 247 (292)
T ss_pred hHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccc
Confidence 7999999988776 78899999988865 3489999999999999877 88899999 666666
Q ss_pred ----CHHHHHHHHHHHHHhCCCCH
Q psy17691 233 ----DIQGALQCYSRAIQINPGFA 252 (673)
Q Consensus 233 ----~~~eA~~~~~~Al~l~p~~~ 252 (673)
+...|..++.++-...+...
T Consensus 248 ~~~~~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 248 AKEEDKKQALEWLQKACELGFDNA 271 (292)
T ss_pred ccCCCHHHHHHHHHHHHHcCChhH
Confidence 77788888888776655443
No 383
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.05 E-value=1.5 Score=46.27 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=103.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17691 130 IQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209 (673)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 209 (673)
.+...|...-.+++++.|+...+-..-+..+++.|+..++-..++.+.+..|.- . ++.+|....--+.++.-+++
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~----ia~lY~~ar~gdta~dRlkR 317 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-D----IALLYVRARSGDTALDRLKR 317 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-H----HHHHHHHhcCCCcHHHHHHH
Confidence 478899999999999999999999999999999999999999999999998853 2 34444444333444444444
Q ss_pred ---HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691 210 ---AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD 264 (673)
Q Consensus 210 ---al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~ 264 (673)
.-.+.|++.+....++..-..-|++..|..--+.+....|. ..++.-|+.+-..
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeA 374 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEA 374 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhh
Confidence 44568999999999999999999999999999999999987 4455566666543
No 384
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=95.79 E-value=0.12 Score=55.44 Aligned_cols=82 Identities=15% Similarity=0.177 Sum_probs=62.0
Q ss_pred HHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCc----chhhhHHHHHHhcCCCccccC---CHHHHHHHHHH
Q psy17691 584 EHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET----LASRVAASQLATLGCPELIAR---THKEYQDIAIR 656 (673)
Q Consensus 584 ~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~----~~~r~~~~~l~~~gl~~~ia~---~~~~yv~~a~~ 656 (673)
+.-..|..+|+++. -+|++|+.|++++|+|.|..+-.. .....-+..+...|....+-. +.+...+...+
T Consensus 245 ~m~~~~~~adlvIs---r~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ 321 (352)
T PRK12446 245 ELPDILAITDFVIS---RAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEE 321 (352)
T ss_pred hHHHHHHhCCEEEE---CCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHH
Confidence 45567889999985 579999999999999999986432 245566778888887654433 56788888888
Q ss_pred hcCCHHHHHHHH
Q psy17691 657 LGTDRDYCEKAL 668 (673)
Q Consensus 657 la~d~~~~~~~~ 668 (673)
+.+|++.+++..
T Consensus 322 ll~~~~~~~~~~ 333 (352)
T PRK12446 322 LSHNNEKYKTAL 333 (352)
T ss_pred HHcCHHHHHHHH
Confidence 888987765543
No 385
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.78 E-value=0.017 Score=38.05 Aligned_cols=31 Identities=19% Similarity=0.361 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691 220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250 (673)
Q Consensus 220 ~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~ 250 (673)
+++++|.++.++|++++|++.|++.++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555555555555555555555554443
No 386
>KOG2396|consensus
Probab=95.78 E-value=0.12 Score=55.67 Aligned_cols=92 Identities=10% Similarity=0.077 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q psy17691 133 SEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGK-LTDALLHYKEAI 211 (673)
Q Consensus 133 ~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al 211 (673)
..-...|+.|+...+.+...|........+.+.+.+-...|.+++..+|++++.|..-|.-.+..+. .+.|...+.++|
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3455677888888887888888777777777778888888888888888888888877777766665 777788888888
Q ss_pred HhCCCCHHHHHHH
Q psy17691 212 RIQPSFADAYSNM 224 (673)
Q Consensus 212 ~~~p~~~~~~~~l 224 (673)
+.+|+++..|...
T Consensus 168 R~npdsp~Lw~ey 180 (568)
T KOG2396|consen 168 RFNPDSPKLWKEY 180 (568)
T ss_pred hcCCCChHHHHHH
Confidence 8888887776543
No 387
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.76 E-value=0.018 Score=38.01 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691 187 HSNLASVLQQQGKLTDALLHYKEAIRIQPS 216 (673)
Q Consensus 187 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 216 (673)
++++|.++...|++++|++.|++.++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444444444444444444444444444443
No 388
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.73 E-value=0.019 Score=39.18 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=13.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691 187 HSNLASVLQQQGKLTDALLHYKEAI 211 (673)
Q Consensus 187 ~~~la~~~~~~g~~~eA~~~~~~al 211 (673)
+.+||.+|..+|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 389
>PRK10941 hypothetical protein; Provisional
Probab=95.72 E-value=0.11 Score=53.13 Aligned_cols=72 Identities=14% Similarity=0.072 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691 186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSN 257 (673)
Q Consensus 186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~ 257 (673)
...|+-.+|.+.++++.|+++.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+..-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 455566666777777777777777777777777777777777777777777777777777777776665443
No 390
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.67 E-value=0.32 Score=42.51 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 186 AHSNLASVLQQQGKLTDALLHYKEAIR-------IQPSFAD----AYSNMGNTLKEMQDIQGALQCYSRAIQI 247 (673)
Q Consensus 186 ~~~~la~~~~~~g~~~eA~~~~~~al~-------~~p~~~~----~~~~lg~~~~~~g~~~eA~~~~~~Al~l 247 (673)
++..|+..+..+|+|++++....++|. ++.+... +-++.|..+..+|+.++|+..|+.+-++
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 444555555555555555555444443 3334333 4467788888888888888888887654
No 391
>KOG2396|consensus
Probab=95.66 E-value=0.13 Score=55.53 Aligned_cols=88 Identities=14% Similarity=0.153 Sum_probs=55.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Q psy17691 170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD-IQGALQCYSRAIQIN 248 (673)
Q Consensus 170 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~Al~l~ 248 (673)
...|+.|+...+.+...|.+......+.+.+.+-...|.+++..+|++++.|..-|.-.+..+. .+.|...|.++|+.+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 4455666666666666666666666666666666666666666666666666666665555554 666666666666666
Q ss_pred CCCHHHHHH
Q psy17691 249 PGFADAHSN 257 (673)
Q Consensus 249 p~~~~a~~~ 257 (673)
|+++..|..
T Consensus 171 pdsp~Lw~e 179 (568)
T KOG2396|consen 171 PDSPKLWKE 179 (568)
T ss_pred CCChHHHHH
Confidence 666655543
No 392
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=95.62 E-value=0.028 Score=58.13 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=41.0
Q ss_pred hhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecC
Q psy17691 557 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 621 (673)
Q Consensus 557 ~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~ 621 (673)
.+.+++..+.. .++.+.+.. .+....+..+|+++.+ ||+|+.|++++|+|+|+++
T Consensus 213 ~~~l~~~~~~~----~~i~~~~~~--~~m~~lm~~aDl~Is~----~G~T~~E~~a~g~P~i~i~ 267 (279)
T TIGR03590 213 LDELKKFAKEY----PNIILFIDV--ENMAELMNEADLAIGA----AGSTSWERCCLGLPSLAIC 267 (279)
T ss_pred HHHHHHHHHhC----CCEEEEeCH--HHHHHHHHHCCEEEEC----CchHHHHHHHcCCCEEEEE
Confidence 34566655442 367777654 4666777899999984 6799999999999999864
No 393
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.62 E-value=0.42 Score=50.83 Aligned_cols=104 Identities=23% Similarity=0.198 Sum_probs=57.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC------------------
Q psy17691 126 VLLLIQVSEAEECYNTALRLCP----THADSLNNLANIKREQGYIEEATRLYLKALEV-FPE------------------ 182 (673)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~-~p~------------------ 182 (673)
..+.|+++.|...+.++...++ ..+.+.+..+.++...|+..+|+..++..+.. ...
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESL 235 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccc
Confidence 3346666666666666665432 13455666666666666666666666666551 000
Q ss_pred ---------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691 183 ---------------FAAAHSNLASVLQQQ------GKLTDALLHYKEAIRIQPSFADAYSNMGNTLK 229 (673)
Q Consensus 183 ---------------~~~~~~~la~~~~~~------g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 229 (673)
...++..+|...... +..++++..|+++++.+|+...+|..+|..+.
T Consensus 236 ~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 236 EVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 023344444444444 55556666666666666666666665555544
No 394
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.24 Score=50.34 Aligned_cols=61 Identities=21% Similarity=0.187 Sum_probs=43.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCC
Q psy17691 139 YNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF--AAAHSNLASVLQQQGK 199 (673)
Q Consensus 139 ~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 199 (673)
+++.+..+|++.++.+.+|..+...|+.++|.+.+-..++.+-+. ..+...+-.++...|.
T Consensus 225 l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 225 LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 566677788888888888888888888888888888887775443 3444444444444443
No 395
>KOG1550|consensus
Probab=95.61 E-value=3.4 Score=47.22 Aligned_cols=183 Identities=18% Similarity=0.099 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--C---CcHHHHHHHHHHHHHcCChhhhcCChhhHHhhcCCCchhhh
Q psy17691 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ--P---NFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRI 77 (673)
Q Consensus 3 ~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~--~---~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l~p~~~~~l 77 (673)
.+|...|+.+-+. .+..+...+|.+|..-+. . +.+.-++.++.. . + ...+....+.....+
T Consensus 229 ~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~--~---~-------~~~a~~~~~~a~~~l 294 (552)
T KOG1550|consen 229 SEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE--S---F-------KKAATKGLPPAQYGL 294 (552)
T ss_pred hHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--H---H-------HHHHhhcCCccccHH
Confidence 4567777766544 578888999999887633 2 223333333322 1 0 011111122223344
Q ss_pred hhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHHHHHHHHHHcCC----HHHHHHHHHHHHHhCCCCHHHH
Q psy17691 78 GYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQ----VSEAEECYNTALRLCPTHADSL 153 (673)
Q Consensus 78 ~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~~~~~~~~~~g~----~~~A~~~~~~al~~~p~~~~a~ 153 (673)
+.+|..-.... ......++..+..+..-.++.+...++.++..|. ..+|.++|..|.+. .+..+.
T Consensus 295 g~~Y~~g~~~~---------~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~ 363 (552)
T KOG1550|consen 295 GRLYLQGLGVE---------KIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAI 363 (552)
T ss_pred HHHHhcCCCCc---------cccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHH
Confidence 44444322100 0034556666666777777777777776666443 67888888888765 677888
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q psy17691 154 NNLANIKRE----QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ-GKLTDALLHYKEAIR 212 (673)
Q Consensus 154 ~~Lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~ 212 (673)
+.+|.+|.. ..+...|..+|+++-+.. ++.+...++..+... ++++.+.-.+...-+
T Consensus 364 ~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 364 YRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAE 425 (552)
T ss_pred HHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 888888774 357888999999988887 444444444444332 555555554444333
No 396
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.58 E-value=0.2 Score=46.62 Aligned_cols=83 Identities=20% Similarity=0.155 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691 153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ 232 (673)
Q Consensus 153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 232 (673)
+..+..+-...++.+++...+...-.+.|+.++.-..-|.++...|++.+|+..++...+..|..+.+--.++.|+..+|
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 34444444555566666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHH
Q psy17691 233 DIQ 235 (673)
Q Consensus 233 ~~~ 235 (673)
+.+
T Consensus 93 D~~ 95 (160)
T PF09613_consen 93 DPS 95 (160)
T ss_pred ChH
Confidence 543
No 397
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.58 E-value=0.13 Score=43.36 Aligned_cols=72 Identities=22% Similarity=0.234 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691 136 EECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF--AAAHSNLASVLQQQGKLTDALLHY 207 (673)
Q Consensus 136 ~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~ 207 (673)
+..+++.++.+|++.++.+.+|..+...|++++|++.+-..++.++++ ..+...+-.++...|.-+.-...|
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~ 81 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEY 81 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHH
Confidence 455677777777777777777777777777777777777777777655 444444444554444433333333
No 398
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.52 E-value=0.5 Score=50.70 Aligned_cols=56 Identities=18% Similarity=-0.038 Sum_probs=33.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691 122 YIISVLLLIQVSEAEECYNTALRLCPT-HAD-SLNNLANIKREQGYIEEATRLYLKAL 177 (673)
Q Consensus 122 ~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~-a~~~Lg~~~~~~g~~~eA~~~~~~al 177 (673)
++..+.+.|-+..|.++.+-.+.++|. ++- +.+.+=....+.++++--++.++...
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 334445577788888888888888777 443 33333344455566665555555433
No 399
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.47 E-value=0.39 Score=51.11 Aligned_cols=120 Identities=18% Similarity=0.304 Sum_probs=100.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-C---
Q psy17691 146 CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE----FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ-P-S--- 216 (673)
Q Consensus 146 ~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p-~--- 216 (673)
.......|...+.+..+.|+++.|...+.++...++. .+.+.+..+.++...|+..+|+..++..++.. . .
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 4456778999999999999999999999999987632 46788889999999999999999999888821 0 0
Q ss_pred -----------------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691 217 -----------------------------FADAYSNMGNTLKEM------QDIQGALQCYSRAIQINPGFADAHSNLASI 261 (673)
Q Consensus 217 -----------------------------~~~~~~~lg~~~~~~------g~~~eA~~~~~~Al~l~p~~~~a~~~La~~ 261 (673)
.+.++..+|...... ++.+++...|+++++++|+...+|+.+|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 134677777777777 889999999999999999999999999998
Q ss_pred HHHc
Q psy17691 262 HKDS 265 (673)
Q Consensus 262 ~~~~ 265 (673)
+...
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 7665
No 400
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.46 E-value=0.16 Score=48.48 Aligned_cols=94 Identities=18% Similarity=0.093 Sum_probs=73.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy17691 123 IISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGK 199 (673)
Q Consensus 123 ~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 199 (673)
+......|++++|+..++.++....+. .-+-..||.+..++|++++|...+...-.. .-.+......|.++..+|+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCc
Confidence 344567899999999999999754332 346778999999999999999988764321 1123345668999999999
Q ss_pred HHHHHHHHHHHHHhCCCC
Q psy17691 200 LTDALLHYKEAIRIQPSF 217 (673)
Q Consensus 200 ~~eA~~~~~~al~~~p~~ 217 (673)
-++|...|+++++..+..
T Consensus 175 k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 175 KQEARAAYEKALESDASP 192 (207)
T ss_pred hHHHHHHHHHHHHccCCh
Confidence 999999999999997543
No 401
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=95.39 E-value=0.033 Score=58.93 Aligned_cols=81 Identities=14% Similarity=0.272 Sum_probs=60.1
Q ss_pred CeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCc-chhhhHHHHHHhcCCCccccCCHHHH
Q psy17691 572 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET-LASRVAASQLATLGCPELIARTHKEY 650 (673)
Q Consensus 572 ~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~-~~~r~~~~~l~~~gl~~~ia~~~~~y 650 (673)
+++.+.+..+ +++...+..||+++.. +|.+|++||+++|+|+|..+-.. +-...-+..+...|+...+-.+.-+-
T Consensus 229 ~~v~~~~~~~-~~~~~~l~~ad~vI~~---~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~~~ 304 (321)
T TIGR00661 229 ENVEIRRITT-DNFKELIKNAELVITH---GGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKELRL 304 (321)
T ss_pred CCEEEEECCh-HHHHHHHHhCCEEEEC---CChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhHHH
Confidence 6788887765 6788888999999874 57789999999999999998753 35667788899999886653333333
Q ss_pred HHHHHH
Q psy17691 651 QDIAIR 656 (673)
Q Consensus 651 v~~a~~ 656 (673)
++....
T Consensus 305 ~~~~~~ 310 (321)
T TIGR00661 305 LEAILD 310 (321)
T ss_pred HHHHHh
Confidence 333333
No 402
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.38 E-value=1.5 Score=41.16 Aligned_cols=149 Identities=13% Similarity=0.046 Sum_probs=109.5
Q ss_pred CChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHH
Q psy17691 115 DDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTH--ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF----AAAHS 188 (673)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~ 188 (673)
.....+.....+...+..++|+..|...-+-.-.. .-+.+..|.+..+.|+..+|+..|.++-.-.|.- -.+..
T Consensus 57 ~sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 57 KSGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred cchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 34455555566667889999999998877665443 3467778999999999999999999987665432 23456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691 189 NLASVLQQQGKLTDALLHYKEA-IRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD 264 (673)
Q Consensus 189 ~la~~~~~~g~~~eA~~~~~~a-l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~ 264 (673)
.-+.++...|-|++-....+.. -..+|--..+.-.||..-.+.|++.+|..+|.+... +.+.+....+.+++..+
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 6677888999998876655432 123444556778899999999999999999998776 55556666666666544
No 403
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=95.38 E-value=0.077 Score=55.78 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=55.0
Q ss_pred CCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCc-chhhhHHHHHHhcCCCcccc
Q psy17691 571 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET-LASRVAASQLATLGCPELIA 644 (673)
Q Consensus 571 ~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~-~~~r~~~~~l~~~gl~~~ia 644 (673)
.+.|.+.+.. ..++...+..||+++.. +|.+|++|++++|+|+|+++-+. .-.+.-+..|+.+|+...+.
T Consensus 231 ~~ni~~~~~~-~~~~~~~m~~ad~vIs~---~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~ 301 (318)
T PF13528_consen 231 PGNIHVRPFS-TPDFAELMAAADLVISK---GGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLS 301 (318)
T ss_pred CCCEEEeecC-hHHHHHHHHhCCEEEEC---CCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcc
Confidence 4667777643 24566667789999875 78899999999999999998764 46777789999999987653
No 404
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.37 E-value=0.53 Score=49.73 Aligned_cols=111 Identities=11% Similarity=0.094 Sum_probs=82.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691 137 ECYNTALRLCPTHADSLNNLANIKREQGY------------IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL 204 (673)
Q Consensus 137 ~~~~~al~~~p~~~~a~~~Lg~~~~~~g~------------~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 204 (673)
.-|++.++.+|++.++|..+....-..-. .+.-+..|++|++.+|++...+..+-.+..+..+-++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34777888888888888888766444322 455677888889889988888888878888888888888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHh
Q psy17691 205 LHYKEAIRIQPSFADAYSNMGNTLKE---MQDIQGALQCYSRAIQI 247 (673)
Q Consensus 205 ~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~eA~~~~~~Al~l 247 (673)
+.+++++..+|++...|..+-..... .-.+++....|.++++.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 88889998888888887765544433 23466777777777654
No 405
>PRK10941 hypothetical protein; Provisional
Probab=95.27 E-value=0.2 Score=51.18 Aligned_cols=76 Identities=17% Similarity=-0.012 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691 152 SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227 (673)
Q Consensus 152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 227 (673)
...++=.+|.+.++++.|+.+.+..+.++|+++.-+...|.+|.++|.+..|..-++..++..|+++.+-.....+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4667778889999999999999999999999999999999999999999999999999999999988776544433
No 406
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.24 E-value=0.56 Score=41.05 Aligned_cols=90 Identities=21% Similarity=0.129 Sum_probs=68.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCH
Q psy17691 124 ISVLLLIQVSEAEECYNTALRLCPT------------HADSLNNLANIKREQGYIEEATRLYLKALEV-------FPEFA 184 (673)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~-------~p~~~ 184 (673)
..-+.-|-|++|...++++++.... ++-++..|+..+..+|+|++++..-.++|.. +.+..
T Consensus 17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG 96 (144)
T PF12968_consen 17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG 96 (144)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc
Confidence 3445678999999999999997532 2447888999999999999998888887764 44443
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 185 ----AAHSNLASVLQQQGKLTDALLHYKEAIRI 213 (673)
Q Consensus 185 ----~~~~~la~~~~~~g~~~eA~~~~~~al~~ 213 (673)
.+-++.+..+..+|+.++|+..|+.+-+.
T Consensus 97 klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 97 KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 34567899999999999999999988664
No 407
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.20 E-value=0.029 Score=35.76 Aligned_cols=31 Identities=32% Similarity=0.659 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691 220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250 (673)
Q Consensus 220 ~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~ 250 (673)
++.++|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666655553
No 408
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.18 E-value=0.12 Score=38.72 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691 220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHS 256 (673)
Q Consensus 220 ~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~ 256 (673)
.++.+|..+.++|+|++|..+.+.+|+++|++.++..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3455555555555555555555555555555555443
No 409
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.16 E-value=0.17 Score=42.61 Aligned_cols=66 Identities=20% Similarity=0.178 Sum_probs=40.3
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH
Q psy17691 170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF--ADAYSNMGNTLKEMQDIQ 235 (673)
Q Consensus 170 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~ 235 (673)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|.-+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 455677777777777777777777777777777777777777776654 344444444444444433
No 410
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=95.08 E-value=0.26 Score=58.83 Aligned_cols=159 Identities=17% Similarity=0.144 Sum_probs=96.0
Q ss_pred ccccccCCCCCcEEEecCCccc--ccChhhHHHHHHHHhcccCee--EEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691 464 TSRQQYGLPEDAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSI--LWLLKFPAVGEANISRPLFRPRLRPSASTSIVL 539 (673)
Q Consensus 464 ~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (673)
..|+.++ +..++.++.|+. |..+.-+.+|.+.|+..|.-+ ++|+..
T Consensus 355 ~lr~~~~---g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQI--------------------------- 404 (934)
T PLN03064 355 ELKERFA---GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQI--------------------------- 404 (934)
T ss_pred HHHHHhC---CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEE---------------------------
Confidence 3455555 455777778776 889999999999999999853 554420
Q ss_pred hccCchhhhhccCChhhhhhHHHHH--------HHcCCCC-CeEEecc-CcChHHHHHhcccccEEecCC-CCCCcchhh
Q psy17691 540 KAVPNSILWLLKFPAVGEANIQATA--------QALGLDQ-HRILFSN-VAAKEEHVRRGQLADVCLDTP-LCNGHTTSM 608 (673)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~-~rv~~~~-~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~ 608 (673)
++|.+ ..++..+.+++.+ .++|-.- .=|.+.. .++.+++.++|..+||+|-|. -.+=+.+..
T Consensus 405 -a~psr------~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~ 477 (934)
T PLN03064 405 -AVPTR------TDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSY 477 (934)
T ss_pred -cCCCC------CCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHH
Confidence 01110 0112223333332 2334321 1255554 478999999999999998876 556699999
Q ss_pred hhhhc-----CCceeecCCCcchhhhHHHHHHhcCCCcccc--CCHHHHHHHHHHhcC-CHHHHHHHH
Q psy17691 609 DVLWT-----GTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGT-DRDYCEKAL 668 (673)
Q Consensus 609 eal~~-----GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~yv~~a~~la~-d~~~~~~~~ 668 (673)
|++++ |++|+.= |+| ++..| |-..++. .|.++..+...+..+ +++.+.+..
T Consensus 478 Eyva~~~~~~GvLILSE----faG--aa~~L---~~~AllVNP~D~~~vA~AI~~AL~M~~~Er~~r~ 536 (934)
T PLN03064 478 EFVACQDSKKGVLILSE----FAG--AAQSL---GAGAILVNPWNITEVAASIAQALNMPEEEREKRH 536 (934)
T ss_pred HHHHhhcCCCCCeEEeC----CCc--hHHHh---CCceEEECCCCHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999 6676642 111 11223 3233333 367777666666555 666655543
No 411
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.91 E-value=0.19 Score=43.49 Aligned_cols=101 Identities=10% Similarity=0.015 Sum_probs=59.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691 124 ISVLLLIQVSEAEECYNTALRLCPTHAD---SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL 200 (673)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 200 (673)
..++..|++-+|++..+..+...+++.. .+..-|.++.++ +-..+..+....+.
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yL----------- 60 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYL----------- 60 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHH-----------
Confidence 3456677888888888888887776653 344445554332 22222112222222
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 201 TDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI 247 (673)
Q Consensus 201 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l 247 (673)
-.|+++|.++..+.|..+..++.+|.-+.....|+++..-.+++|.+
T Consensus 61 l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 61 LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 23556666667777766666677766666666666666666666654
No 412
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.84 E-value=0.76 Score=42.76 Aligned_cols=85 Identities=21% Similarity=0.136 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691 185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD 264 (673)
Q Consensus 185 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~ 264 (673)
..+..+..+-...++.+++...+...--+.|+.++.-..-|.++...|++.+|+..++...+-.|..+.+.--++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34556666777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCc
Q psy17691 265 SGKRG 269 (673)
Q Consensus 265 ~g~~~ 269 (673)
+|+.+
T Consensus 91 ~~D~~ 95 (160)
T PF09613_consen 91 LGDPS 95 (160)
T ss_pred cCChH
Confidence 99877
No 413
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.82 E-value=0.16 Score=38.06 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691 186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS 222 (673)
Q Consensus 186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 222 (673)
.++.+|..+++.|+|++|..+.+.+++.+|++..+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3455555556666666666666666666666555443
No 414
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.78 E-value=0.23 Score=43.03 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=49.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691 157 ANIKREQGYIEEATRLYLKALEVFPEFAAAH---SNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD 233 (673)
Q Consensus 157 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 233 (673)
+.-++..|++-+|++..+..+..++++...| ..-|.++. +.+-..+..+...-+.+
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~------------~lA~~ten~d~k~~yLl--------- 61 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFY------------KLAKKTENPDVKFRYLL--------- 61 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHH------------HHHHhccCchHHHHHHH---------
Confidence 4556667777777777777777666655332 22233322 22333332233333333
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691 234 IQGALQCYSRAIQINPGFADAHSNLASI 261 (673)
Q Consensus 234 ~~eA~~~~~~Al~l~p~~~~a~~~La~~ 261 (673)
.|+++|.++..+.|..+..++.||.-
T Consensus 62 --~sve~~s~a~~Lsp~~A~~L~~la~~ 87 (111)
T PF04781_consen 62 --GSVECFSRAVELSPDSAHSLFELASQ 87 (111)
T ss_pred --HhHHHHHHHhccChhHHHHHHHHHHH
Confidence 46788999999999988888888764
No 415
>KOG1192|consensus
Probab=94.71 E-value=0.18 Score=56.71 Aligned_cols=103 Identities=15% Similarity=0.308 Sum_probs=70.6
Q ss_pred CcEEEecCCccc---ccChhhHHHHHHHHhcccCee-EEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhh
Q psy17691 474 DAIVYCNFNQLY---KIDPSTLQMWVNVLKAVPNSI-LWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWL 549 (673)
Q Consensus 474 ~~~~~~~~~~~~---K~~~~~~~~~~~il~~~p~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (673)
..++|.||+... .++.+.....+..+...|+-. +|-...
T Consensus 277 ~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~------------------------------------- 319 (496)
T KOG1192|consen 277 HSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRP------------------------------------- 319 (496)
T ss_pred CCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecC-------------------------------------
Confidence 378888888777 899999999999999886666 454430
Q ss_pred ccCChhhhhhHHHHHHHcCC---CCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeec--CCCc
Q psy17691 550 LKFPAVGEANIQATAQALGL---DQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL--PGET 624 (673)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~g~---~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~--~g~~ 624 (673)
+... . -..|+ +.+.|++.++.|+.+.+..+..+..|+ .++|=.||+|+++.|||+|++ -|++
T Consensus 320 ---~~~~--~-----~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~Fv---THgG~nSt~E~~~~GvP~v~~Plf~DQ 386 (496)
T KOG1192|consen 320 ---DDSI--Y-----FPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFV---THGGWNSTLESIYSGVPMVCVPLFGDQ 386 (496)
T ss_pred ---Ccch--h-----hhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEE---ECCcccHHHHHHhcCCceecCCccccc
Confidence 0000 0 01122 235688889999999873333344443 588989999999999999854 4555
Q ss_pred ch
Q psy17691 625 LA 626 (673)
Q Consensus 625 ~~ 626 (673)
+.
T Consensus 387 ~~ 388 (496)
T KOG1192|consen 387 PL 388 (496)
T ss_pred hh
Confidence 53
No 416
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.64 E-value=0.051 Score=34.50 Aligned_cols=29 Identities=45% Similarity=0.497 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17691 153 LNNLANIKREQGYIEEATRLYLKALEVFP 181 (673)
Q Consensus 153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p 181 (673)
+..+|.++...+++++|+.+++++++.+|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444444444444444444444444443
No 417
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.57 E-value=2.2 Score=44.02 Aligned_cols=123 Identities=16% Similarity=0.051 Sum_probs=91.6
Q ss_pred HHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC----CC---C-------
Q psy17691 127 LLLIQVSEAEECYNTALRLC----PTH----ADSLNNLANIKREQG-YIEEATRLYLKALEVF----PE---F------- 183 (673)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~----p~~----~~a~~~Lg~~~~~~g-~~~eA~~~~~~al~~~----p~---~------- 183 (673)
.+.|+++.|..++.|+-... |+. ...+++.|......+ ++++|..++++++++- .. .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45789999999999987764 322 457888888888999 9999999999998882 11 1
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691 184 AAAHSNLASVLQQQGKLT---DALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249 (673)
Q Consensus 184 ~~~~~~la~~~~~~g~~~---eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p 249 (673)
..++..++.+|...+.++ +|....+.+-...|+.+..+...-.++.+.++.+++.+.+.+++..-+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 346777888888877754 455555566666788777775555555558899999999999887644
No 418
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.49 E-value=0.42 Score=47.21 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249 (673)
Q Consensus 218 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p 249 (673)
..+.+.+|.+..+.|++++|..+|.+++....
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 35677788888888888888888888776543
No 419
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.34 E-value=0.052 Score=52.81 Aligned_cols=62 Identities=18% Similarity=0.407 Sum_probs=55.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691 192 SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253 (673)
Q Consensus 192 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~ 253 (673)
....+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|.+..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34566789999999999999999999999999999999999999999999999999997654
No 420
>KOG0529|consensus
Probab=94.31 E-value=0.86 Score=48.41 Aligned_cols=133 Identities=19% Similarity=0.118 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17691 131 QVSEAEECYNTALRLCPTHADSLNNLANIKRE------------QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG 198 (673)
Q Consensus 131 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~------------~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 198 (673)
..+++++.-.+.++.+|+...+|+..-.++.. +.-+++-+.+...+++.+|+...+|+....++.+.+
T Consensus 44 yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p 123 (421)
T KOG0529|consen 44 YDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNP 123 (421)
T ss_pred cchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC
Confidence 45677788888888888887777655444332 224566788889999999999999999999999876
Q ss_pred C--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691 199 K--LTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD----IQGALQCYSRAIQINPGFADAHSNLASIHK 263 (673)
Q Consensus 199 ~--~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----~~eA~~~~~~Al~l~p~~~~a~~~La~~~~ 263 (673)
. +..=++.++++++.+|.+..+|...=.+..+... ..+=+++..+++.-++.|..+|.+...++.
T Consensus 124 ~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 124 HSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred CchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 4 6788999999999999998888776655544332 456678889999999999999998877765
No 421
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=94.29 E-value=0.32 Score=51.44 Aligned_cols=157 Identities=16% Similarity=0.159 Sum_probs=93.4
Q ss_pred ccccccCCCCCcEEEecCC--cc---cccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhh
Q psy17691 464 TSRQQYGLPEDAIVYCNFN--QL---YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIV 538 (673)
Q Consensus 464 ~~r~~~~l~~~~~~~~~~~--~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (673)
..|+.+|++.+.-+++.+= |. .++-|-+.++..++..+.|+.++++--.
T Consensus 177 ~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~-------------------------- 230 (381)
T COG0763 177 AAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLV-------------------------- 230 (381)
T ss_pred HHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecC--------------------------
Confidence 4788899998865544322 32 3678888999889888999999987430
Q ss_pred hhccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCcee
Q psy17691 539 LKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVV 618 (673)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvv 618 (673)
....+.++..+.......-.+++... +-...+..||++|- ..||.|+|++..|+|.|
T Consensus 231 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~a~~~aD~al~----aSGT~tLE~aL~g~P~V 287 (381)
T COG0763 231 ---------------NAKYRRIIEEALKWEVAGLSLILIDG----EKRKAFAAADAALA----ASGTATLEAALAGTPMV 287 (381)
T ss_pred ---------------cHHHHHHHHHHhhccccCceEEecCc----hHHHHHHHhhHHHH----hccHHHHHHHHhCCCEE
Confidence 11223333333322221112333332 33345556999875 45999999999999966
Q ss_pred ec-CCCcchhhhHHHHHH--hcCCCccccC------------CHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691 619 TL-PGETLASRVAASQLA--TLGCPELIAR------------THKEYQDIAIRLGTDRDYCEKALL 669 (673)
Q Consensus 619 t~-~g~~~~~r~~~~~l~--~~gl~~~ia~------------~~~~yv~~a~~la~d~~~~~~~~~ 669 (673)
.. .-+.+--.++--+++ .++|+.+++. +.+.-.+....|..|...++++.+
T Consensus 288 v~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~ 353 (381)
T COG0763 288 VAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKE 353 (381)
T ss_pred EEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHH
Confidence 54 333332223332222 2466666655 355566666677788866555544
No 422
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.27 E-value=1.6 Score=46.80 Aligned_cols=128 Identities=20% Similarity=0.109 Sum_probs=90.8
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------C------------CCC---HHHHHHHH
Q psy17691 141 TALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV--------------F------------PEF---AAAHSNLA 191 (673)
Q Consensus 141 ~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~--------------~------------p~~---~~~~~~la 191 (673)
..++.+|-+.+++..++.++..+|+.+.|.+..++||-. + +.| ..+.+...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 446779999999999999999999999999999998642 1 112 23455666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHH
Q psy17691 192 SVLQQQGKLTDALLHYKEAIRIQPS-FAD-AYSNMGNTLKEMQDIQGALQCYSRAIQINP-----GFADAHSNLASIHKD 264 (673)
Q Consensus 192 ~~~~~~g~~~eA~~~~~~al~~~p~-~~~-~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p-----~~~~a~~~La~~~~~ 264 (673)
..+.+.|-+..|.++++-.+.++|. |+- +...+-....+.++++--++.++....... .-+..-+..+.++..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 7778889999999999999999988 654 344444555677788777777776554211 123455556666666
Q ss_pred cCCC
Q psy17691 265 SGKR 268 (673)
Q Consensus 265 ~g~~ 268 (673)
.++.
T Consensus 191 l~~~ 194 (360)
T PF04910_consen 191 LEKE 194 (360)
T ss_pred hcCc
Confidence 6654
No 423
>KOG2300|consensus
Probab=94.17 E-value=1.5 Score=47.47 Aligned_cols=118 Identities=19% Similarity=0.101 Sum_probs=91.6
Q ss_pred HcCCHHHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHH
Q psy17691 128 LLIQVSEAEECYNTALRL---CPT-------HADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVL 194 (673)
Q Consensus 128 ~~g~~~~A~~~~~~al~~---~p~-------~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~ 194 (673)
-.|++.+|++....+.+. .|. .+.+++.+|.....-|.+++|...|..|.+.-... .-+..|+|.+|
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 479999999888877765 344 35678889999999999999999999999875432 44567899999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691 195 QQQGKLTDALLHYKEAIRIQPSF----------ADAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248 (673)
Q Consensus 195 ~~~g~~~eA~~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~ 248 (673)
.+.|+.+.-.+.++ .+.|.+ ..+++..|...+.++++.||....++.++..
T Consensus 415 L~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 415 LRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 99887554433333 345543 3467788888999999999999999999886
No 424
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.10 E-value=0.072 Score=51.86 Aligned_cols=59 Identities=32% Similarity=0.493 Sum_probs=43.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691 159 IKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF 217 (673)
Q Consensus 159 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 217 (673)
...+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34456777777777777777777777777777777777777777777777777777765
No 425
>KOG0985|consensus
Probab=94.09 E-value=1.5 Score=51.27 Aligned_cols=137 Identities=11% Similarity=0.041 Sum_probs=87.7
Q ss_pred cCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy17691 112 LSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191 (673)
Q Consensus 112 l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 191 (673)
..|+.+..-..+..++..+.|+.|.-+|... .-|..|+..+..+|+|+.|....++| ++...|-..+
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVC 1256 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHH
Confidence 4566666666666677777777776666432 34566777777777777777777665 3345566655
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691 192 SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS 265 (673)
Q Consensus 192 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~ 265 (673)
..+...+++.-|.-+=-..+ -+++-+-.+-..|...|-++|-+..++.++-+...+-..+..||.+|.+-
T Consensus 1257 faCvd~~EFrlAQiCGL~ii----vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1257 FACVDKEEFRLAQICGLNII----VHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHhchhhhhHHHhcCceEE----EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 55555555544432211100 12344566677788888888888888888888777777777788877653
No 426
>KOG1310|consensus
Probab=93.99 E-value=0.15 Score=55.26 Aligned_cols=89 Identities=24% Similarity=0.272 Sum_probs=67.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691 163 QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ---GKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ 239 (673)
Q Consensus 163 ~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~ 239 (673)
.+....|+..|.++++..|.....+.+.+.++.+. |+.-.|+.-+..+++++|....+|+.|+.++.+++++.+|++
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 44566778888888888888888888887777664 455566777777788888888888888888888888888888
Q ss_pred HHHHHHHhCCCC
Q psy17691 240 CYSRAIQINPGF 251 (673)
Q Consensus 240 ~~~~Al~l~p~~ 251 (673)
+...+....|.+
T Consensus 467 ~~~alq~~~Ptd 478 (758)
T KOG1310|consen 467 CHWALQMSFPTD 478 (758)
T ss_pred hHHHHhhcCchh
Confidence 777666666644
No 427
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.97 E-value=2.3 Score=45.75 Aligned_cols=117 Identities=19% Similarity=0.127 Sum_probs=81.7
Q ss_pred HHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhh---------CC---CCHHHHH
Q psy17691 124 ISVLLLIQ-VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATR--LYLKALEV---------FP---EFAAAHS 188 (673)
Q Consensus 124 ~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~--~~~~al~~---------~p---~~~~~~~ 188 (673)
..+++.|+ -++|++.++.+++..+.+.++.+..-. +-...|.+|.. .+-+.+.+ .| .+.+.-+
T Consensus 387 k~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~--fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian 464 (549)
T PF07079_consen 387 KHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL--FVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIAN 464 (549)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHH
Confidence 44566665 889999999999999888755433221 11222333321 22222222 12 2344455
Q ss_pred HHH--HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17691 189 NLA--SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSR 243 (673)
Q Consensus 189 ~la--~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 243 (673)
.|+ ..++.+|+|.++.-+-.-..++.| ++.++..+|.++...++|++|..++.+
T Consensus 465 ~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 554 456889999999999999999999 799999999999999999999999875
No 428
>KOG2300|consensus
Probab=93.92 E-value=1.1 Score=48.40 Aligned_cols=137 Identities=16% Similarity=0.083 Sum_probs=98.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHH
Q psy17691 128 LLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF----------AAAHSNLASVL 194 (673)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~----------~~~~~~la~~~ 194 (673)
..+.++.|...|..|.++-... +.+..++|.+|.+.++-+.-.+.++ .+.|.+ ..+++..|...
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfa 455 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFA 455 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 4789999999999999975432 3456788999999887554433333 345543 45677788888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHH---HHHHH
Q psy17691 195 QQQGKLTDALLHYKEAIRIQPS------FADAYSNMGNTLKEMQDIQGALQCYSRAIQIN---PGFADAHSN---LASIH 262 (673)
Q Consensus 195 ~~~g~~~eA~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~---p~~~~a~~~---La~~~ 262 (673)
+.++++.||...+.+.++.... .+-.+..||.+....|+..++....+-++++. |+.+-..+. +-.+|
T Consensus 456 f~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~ 535 (629)
T KOG2300|consen 456 FKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLY 535 (629)
T ss_pred HHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 9999999999999999998621 12345678889999999999999888888764 343332222 33455
Q ss_pred HHcCC
Q psy17691 263 KDSGK 267 (673)
Q Consensus 263 ~~~g~ 267 (673)
...|+
T Consensus 536 ~a~g~ 540 (629)
T KOG2300|consen 536 QALGE 540 (629)
T ss_pred HHhCc
Confidence 66665
No 429
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.88 E-value=0.67 Score=45.82 Aligned_cols=95 Identities=22% Similarity=0.174 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhhCC--C----CHHHHHHH
Q psy17691 131 QVSEAEECYNTALRLC----PT---HADSLNNLANIKREQGYIEEATRLYLKA-------LEVFP--E----FAAAHSNL 190 (673)
Q Consensus 131 ~~~~A~~~~~~al~~~----p~---~~~a~~~Lg~~~~~~g~~~eA~~~~~~a-------l~~~p--~----~~~~~~~l 190 (673)
.+++|++.|.-|+-.. .+ -+..+..+|++|..+|+.++....+++| ++... . ...+.+.+
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi 171 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI 171 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence 6788888888777642 22 2567889999999999966555555555 44332 2 25678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHH
Q psy17691 191 ASVLQQQGKLTDALLHYKEAIRIQPSFA-DAYSNMG 225 (673)
Q Consensus 191 a~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~lg 225 (673)
|.+..+.|++++|++.|.+++.....+. ..+.++|
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMA 207 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 9999999999999999999998754433 2444444
No 430
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=93.81 E-value=0.61 Score=52.72 Aligned_cols=82 Identities=15% Similarity=0.047 Sum_probs=55.8
Q ss_pred HHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchh-hhHHHHHH----hcC----------CCccc----cCC
Q psy17691 586 VRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLAS-RVAASQLA----TLG----------CPELI----ART 646 (673)
Q Consensus 586 ~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~-r~~~~~l~----~~g----------l~~~i----a~~ 646 (673)
...++.||++|-+ .||.|+|+..+|+|.|+..--...+ .++--+++ .+| .||++ ..|
T Consensus 483 ~~~m~aaD~aLaa----SGTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~t 558 (608)
T PRK01021 483 YELMRECDCALAK----CGTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQ 558 (608)
T ss_pred HHHHHhcCeeeec----CCHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCC
Confidence 3667789999854 5999999999999977654333222 23323333 122 36788 456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhhc
Q psy17691 647 HKEYQDIAIRLGTDRDYCEKALLYHE 672 (673)
Q Consensus 647 ~~~yv~~a~~la~d~~~~~~~~~~~~ 672 (673)
++.-.+. +++..|++.|++++...+
T Consensus 559 pe~La~~-l~lL~d~~~r~~~~~~l~ 583 (608)
T PRK01021 559 PEEVAAA-LDILKTSQSKEKQKDACR 583 (608)
T ss_pred HHHHHHH-HHHhcCHHHHHHHHHHHH
Confidence 7777765 699999998888877543
No 431
>KOG1914|consensus
Probab=93.71 E-value=2.1 Score=46.96 Aligned_cols=139 Identities=18% Similarity=0.197 Sum_probs=103.6
Q ss_pred HHhcCCCChhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy17691 109 CYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS 188 (673)
Q Consensus 109 ~~~l~p~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 188 (673)
.++.+|.+-.+|..+...+....+++....|++.+...|..+.+|..........++|+.-++.|.++|..-=+ .+.|.
T Consensus 12 rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~ 90 (656)
T KOG1914|consen 12 RIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWK 90 (656)
T ss_pred HHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHH
Confidence 56789999999999988888889999999999999999999999999999999999999999999999875332 34443
Q ss_pred -HHHHHHHHcCCHHHHHH----HHHHHHH---hCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhC
Q psy17691 189 -NLASVLQQQGKLTDALL----HYKEAIR---IQPSFADAYSNMGNTLK---------EMQDIQGALQCYSRAIQIN 248 (673)
Q Consensus 189 -~la~~~~~~g~~~eA~~----~~~~al~---~~p~~~~~~~~lg~~~~---------~~g~~~eA~~~~~~Al~l~ 248 (673)
.+..+-...++...+.. .|+-+++ .++.....|...+..+. ++.+.+.-...|++|+..-
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 33444444555444333 3333332 35666777877776653 3446677788999998653
No 432
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.70 E-value=0.83 Score=41.85 Aligned_cols=79 Identities=10% Similarity=-0.015 Sum_probs=53.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy17691 157 ANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQ 235 (673)
Q Consensus 157 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 235 (673)
...-...++.+++...+...--+.|+..+....-|.++...|++.+|+..++...+..+..+.+--.++.|+.-+|+.+
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 3333446667777777766666777777777777777777777777777777766666666666666677777666654
No 433
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.62 E-value=0.16 Score=35.31 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 219 DAYSNMGNTLKEMQDIQGALQCYSRAIQI 247 (673)
Q Consensus 219 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~l 247 (673)
.++.++|.+|..+|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 56788888888888888888888888775
No 434
>KOG3364|consensus
Probab=93.46 E-value=1.1 Score=40.14 Aligned_cols=73 Identities=18% Similarity=0.103 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691 150 ADSLNNLANIKREQG---YIEEATRLYLKALE-VFPEF-AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS 222 (673)
Q Consensus 150 ~~a~~~Lg~~~~~~g---~~~eA~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 222 (673)
.+..+++++++.... +..+.+.+++..++ -+|.. -+..+.|+..+++.|+|++|+.+.+..++..|++.++..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 445666666665443 44556666776665 33332 456666777777777777777777777777777665543
No 435
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.43 E-value=0.51 Score=50.71 Aligned_cols=137 Identities=14% Similarity=0.080 Sum_probs=109.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy17691 121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL 200 (673)
Q Consensus 121 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 200 (673)
..+...+..|+.-.|-.-...++...|..+......+.+...+|+|+.|...+..+-..-..-..+...+-.....+|++
T Consensus 294 ~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 294 LSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhH
Confidence 33444556789999999999999999999999999999999999999999888766555444444555556667889999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691 201 TDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSN 257 (673)
Q Consensus 201 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~ 257 (673)
++|.....-.+.-.-++++...--+..-.++|-+++|.-++++.+.++|.....|.|
T Consensus 374 ~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 374 REALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred HHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence 999998888887777777777777777788899999999999999998865444443
No 436
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.41 E-value=1.7 Score=41.57 Aligned_cols=99 Identities=16% Similarity=0.081 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHH----H
Q psy17691 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRIQP--SFAD----A 220 (673)
Q Consensus 150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~----~ 220 (673)
-.++..+|..|.+.|++++|+++|.++.+..... .+.+.++-.+....+++.....+..++-..-. .+.+ .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4578899999999999999999999988876443 56778888899999999999999988876532 2222 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17691 221 YSNMGNTLKEMQDIQGALQCYSRAIQIN 248 (673)
Q Consensus 221 ~~~lg~~~~~~g~~~eA~~~~~~Al~l~ 248 (673)
...-|..+...++|.+|-+.|-.+..-.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 3445667778899999999987765443
No 437
>KOG4814|consensus
Probab=93.39 E-value=0.63 Score=51.75 Aligned_cols=95 Identities=13% Similarity=0.073 Sum_probs=79.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy17691 119 TFSYIISVLLLIQVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 192 (673)
Q Consensus 119 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 192 (673)
.|..+...++..+|..+++.|+..+...|.+ +....+++.+|..+.+.+.|.+++++|=+.+|.++-....+-.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 4556666778889999999999998887665 4467788889999999999999999999999999888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q psy17691 193 VLQQQGKLTDALLHYKEAIRI 213 (673)
Q Consensus 193 ~~~~~g~~~eA~~~~~~al~~ 213 (673)
+....|.-++|+.+..+....
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhh
Confidence 888889999998888776654
No 438
>KOG0890|consensus
Probab=93.36 E-value=3 Score=53.32 Aligned_cols=132 Identities=20% Similarity=0.194 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691 132 VSEAEECYNTALRL---C----PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL 204 (673)
Q Consensus 132 ~~~A~~~~~~al~~---~----p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 204 (673)
..+-+-.+++++-. + ..-.+.|.+.|.+....|+++.|..+.-+|.+.. -++++...|..+-.+|+-..|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 44555555555432 2 2337789999999999999999999999998877 5788899999999999999999
Q ss_pred HHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17691 205 LHYKEAIRIQPSF-----------------ADAYSNMGNTLKEMQDI--QGALQCYSRAIQINPGFADAHSNLASIHKDS 265 (673)
Q Consensus 205 ~~~~~al~~~p~~-----------------~~~~~~lg~~~~~~g~~--~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~ 265 (673)
..+++.++.+-.+ ..+...++......|++ +.-+.+|+++.++.|...+.++.+|..|.+.
T Consensus 1723 ~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kl 1802 (2382)
T KOG0890|consen 1723 SVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKL 1802 (2382)
T ss_pred HHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHH
Confidence 9999999764222 11334444445555554 3557899999999999899999999776655
No 439
>KOG1310|consensus
Probab=93.13 E-value=0.24 Score=53.74 Aligned_cols=91 Identities=25% Similarity=0.151 Sum_probs=80.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691 128 LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQ---GYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL 204 (673)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~---g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 204 (673)
..+....|+..|.++++..|.....+.+.+.++.+. |+.-.|+.....|++++|....+|+.|+.++..++++.+|+
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence 345688999999999999999999999999998875 57777888899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCH
Q psy17691 205 LHYKEAIRIQPSFA 218 (673)
Q Consensus 205 ~~~~~al~~~p~~~ 218 (673)
.+...+....|.+.
T Consensus 466 ~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 466 SCHWALQMSFPTDV 479 (758)
T ss_pred hhHHHHhhcCchhh
Confidence 99988877778543
No 440
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=93.12 E-value=0.14 Score=48.34 Aligned_cols=92 Identities=17% Similarity=0.203 Sum_probs=58.7
Q ss_pred CeEEeccCcC-hHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcc---hhhhHHHHHHhcCCCcccc---
Q psy17691 572 HRILFSNVAA-KEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETL---ASRVAASQLATLGCPELIA--- 644 (673)
Q Consensus 572 ~rv~~~~~~~-~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~~~l~~~gl~~~ia--- 644 (673)
.+|.+.+..+ ..+++ ..+|+++. .+|++|+.|++.+|+|.|.++-... ....-+..+...|..-.+.
T Consensus 55 ~~v~~~~~~~~m~~~m---~~aDlvIs---~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~ 128 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELM---AAADLVIS---HAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESE 128 (167)
T ss_dssp CCCEEECSSSSHHHHH---HHHSEEEE---CS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC
T ss_pred CcEEEEechhhHHHHH---HHcCEEEe---CCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCccc
Confidence 5788888776 45544 57999875 5788999999999999988866652 3333445566666654433
Q ss_pred CCHHHHHHHHHHhcCCHHHHHHHHh
Q psy17691 645 RTHKEYQDIAIRLGTDRDYCEKALL 669 (673)
Q Consensus 645 ~~~~~yv~~a~~la~d~~~~~~~~~ 669 (673)
.+.++..+....+.+++..+..+..
T Consensus 129 ~~~~~L~~~i~~l~~~~~~~~~~~~ 153 (167)
T PF04101_consen 129 LNPEELAEAIEELLSDPEKLKEMAK 153 (167)
T ss_dssp -SCCCHHHHHHCHCCCHH-SHHHCC
T ss_pred CCHHHHHHHHHHHHcCcHHHHHHHH
Confidence 2356677777778888887666544
No 441
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=93.06 E-value=0.56 Score=52.08 Aligned_cols=115 Identities=19% Similarity=0.048 Sum_probs=80.9
Q ss_pred ccccccCCCC--CcEEEecCCccc--ccChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhh
Q psy17691 464 TSRQQYGLPE--DAIVYCNFNQLY--KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVL 539 (673)
Q Consensus 464 ~~r~~~~l~~--~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (673)
.+++++||+. +.+.|+.++|+. |--+-.+.+--.++... .+++++|.. +
T Consensus 281 ~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~g---d---------------------- 333 (487)
T COG0297 281 ALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTG---D---------------------- 333 (487)
T ss_pred HHHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecC---c----------------------
Confidence 4567899994 568999999885 88888888888888776 888888821 1
Q ss_pred hccCchhhhhccCChhhhhhHHHHHHHcCCCCCeEEeccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCcee
Q psy17691 540 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVV 618 (673)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvv 618 (673)
..-++.++.....+ ++++.+.-..+..-....|.-+|++|=|. =+.-|.|-++||..|.+.|
T Consensus 334 --------------~~le~~~~~la~~~---~~~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpI 396 (487)
T COG0297 334 --------------PELEEALRALASRH---PGRVLVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPI 396 (487)
T ss_pred --------------HHHHHHHHHHHHhc---CceEEEEeeecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcce
Confidence 11134445544444 34665555555566677889999997754 5577999999999997555
Q ss_pred e-cCC
Q psy17691 619 T-LPG 622 (673)
Q Consensus 619 t-~~g 622 (673)
. -.|
T Consensus 397 v~~tG 401 (487)
T COG0297 397 VRETG 401 (487)
T ss_pred EcccC
Confidence 4 444
No 442
>KOG4814|consensus
Probab=92.77 E-value=0.99 Score=50.26 Aligned_cols=95 Identities=18% Similarity=0.105 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691 153 LNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226 (673)
Q Consensus 153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 226 (673)
+.+-|.-+++..+|..++++|...+..-|.+ .....+++.+|..+.+.+.|.+++++|-+.+|.++-....+-.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3344666778889999999999999887655 5677889999999999999999999999999998888777778
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q psy17691 227 TLKEMQDIQGALQCYSRAIQI 247 (673)
Q Consensus 227 ~~~~~g~~~eA~~~~~~Al~l 247 (673)
+....|.-++|+.+..+....
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhh
Confidence 888888999999888877654
No 443
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.70 E-value=0.25 Score=34.21 Aligned_cols=28 Identities=57% Similarity=0.663 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17691 152 SLNNLANIKREQGYIEEATRLYLKALEV 179 (673)
Q Consensus 152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~ 179 (673)
++.++|.+|..+|++++|+.++++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4445555555555555555555555443
No 444
>KOG3364|consensus
Probab=92.67 E-value=2.3 Score=38.24 Aligned_cols=83 Identities=11% Similarity=0.174 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691 183 FAAAHSNLASVLQQQGK---LTDALLHYKEAIR-IQPS-FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSN 257 (673)
Q Consensus 183 ~~~~~~~la~~~~~~g~---~~eA~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~ 257 (673)
.....++++.++....+ ..+-+..++..++ -+|. .-+..+.|+..+.+.|+|++|+.+....++.+|++.++..-
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45678899999876654 5678899999997 4443 35688999999999999999999999999999999988765
Q ss_pred HHHHHHHc
Q psy17691 258 LASIHKDS 265 (673)
Q Consensus 258 La~~~~~~ 265 (673)
--.+..+.
T Consensus 111 k~~ied~i 118 (149)
T KOG3364|consen 111 KETIEDKI 118 (149)
T ss_pred HHHHHHHH
Confidence 54444433
No 445
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.29 E-value=0.22 Score=50.63 Aligned_cols=84 Identities=12% Similarity=0.146 Sum_probs=53.7
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691 174 LKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN-MGNTLKEMQDIQGALQCYSRAIQINPGFA 252 (673)
Q Consensus 174 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~eA~~~~~~Al~l~p~~~ 252 (673)
.++-...++++..|...+....+.|-|.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...|.++++++|+++
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 34444456666666666666666666666666677777777777666655 33445556667777777777777777666
Q ss_pred HHHHH
Q psy17691 253 DAHSN 257 (673)
Q Consensus 253 ~a~~~ 257 (673)
..|..
T Consensus 177 ~iw~e 181 (435)
T COG5191 177 RIWIE 181 (435)
T ss_pred hHHHH
Confidence 66544
No 446
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.09 E-value=16 Score=42.82 Aligned_cols=98 Identities=19% Similarity=0.096 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q psy17691 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPE--F-------AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF--- 217 (673)
Q Consensus 150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~--~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--- 217 (673)
+......++....+.++.+|..+..++-..-+. . ....-..|.+....|+.++|++..+.++..-|.+
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 334444555556666666666666555443222 1 2333344555566666666666666666665543
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 218 --ADAYSNMGNTLKEMQDIQGALQCYSRAIQI 247 (673)
Q Consensus 218 --~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l 247 (673)
..++..+|.+..-.|++++|..+.+++.++
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 235556666666666666666666666655
No 447
>KOG2941|consensus
Probab=91.52 E-value=1.2 Score=46.29 Aligned_cols=113 Identities=16% Similarity=0.091 Sum_probs=89.3
Q ss_pred ChhhhhhHHHHHHHcCCCCCeEEe-ccCcChHHHHHhcccccEE--ecCCCCC--CcchhhhhhhcCCceeecCCCcchh
Q psy17691 553 PAVGEANIQATAQALGLDQHRILF-SNVAAKEEHVRRGQLADVC--LDTPLCN--GHTTSMDVLWTGTPVVTLPGETLAS 627 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~g~~~~rv~~-~~~~~~~~~~~~~~~~Di~--Ld~~p~~--g~~t~~eal~~GvPvvt~~g~~~~~ 627 (673)
.|+..+...+.+.++.. .+|.+ .++..-++|-..+..||+. |.|+.-+ =+|-++|-.-+|+||.++.=...-.
T Consensus 301 KGPlkE~Y~~~I~~~~~--~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~E 378 (444)
T KOG2941|consen 301 KGPLKEKYSQEIHEKNL--QHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLDE 378 (444)
T ss_pred CCchhHHHHHHHHHhcc--cceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhHHH
Confidence 46677788888888876 56655 5889999999999999976 5565332 3789999999999999976644433
Q ss_pred hhHHHHHHhcCCCccccCCHHHHHHHHHHhcC----CHHHHHHHHhhhcC
Q psy17691 628 RVAASQLATLGCPELIARTHKEYQDIAIRLGT----DRDYCEKALLYHEE 673 (673)
Q Consensus 628 r~~~~~l~~~gl~~~ia~~~~~yv~~a~~la~----d~~~~~~~~~~~~~ 673 (673)
|-.-|-++++..|.++..+.-.-|-+ |.+.+.++++++.|
T Consensus 379 ------LVkh~eNGlvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e 422 (444)
T KOG2941|consen 379 ------LVKHGENGLVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLRE 422 (444)
T ss_pred ------HHhcCCCceEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHH
Confidence 44458888999999999999988888 99999999987653
No 448
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.39 E-value=3.1 Score=46.25 Aligned_cols=140 Identities=20% Similarity=0.134 Sum_probs=114.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691 130 IQVSEAEECYNTALRLCPTHADSLNN--LANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHY 207 (673)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~a~~~--Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 207 (673)
+...-++..+...+.+++.+++.+.. +...+...++...+.-....++..+|.+..+..+|+..+...|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444777777778888888876443 4777888899999999999999999999999999999998888777666655
Q ss_pred HH-HHHhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 208 KE-AIRIQPSFADAYSNM------GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 208 ~~-al~~~p~~~~~~~~l------g~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
.+ +....|++......+ |..+..+|+..++....+++.++.|.++.....+.....+..++.
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~ 193 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP 193 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch
Confidence 55 889999988766555 999999999999999999999999999888777776655555543
No 449
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.32 E-value=0.32 Score=49.52 Aligned_cols=87 Identities=8% Similarity=0.041 Sum_probs=73.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17691 138 CYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSN-LASVLQQQGKLTDALLHYKEAIRIQPS 216 (673)
Q Consensus 138 ~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~eA~~~~~~al~~~p~ 216 (673)
.|.++....++++..|...+..-...+-+.+-...|.++++.+|.+.+.|.. -+.-+...++++.+...+.++++.+|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 4555566678889999998888888889999999999999999999998877 555677789999999999999999999
Q ss_pred CHHHHHHH
Q psy17691 217 FADAYSNM 224 (673)
Q Consensus 217 ~~~~~~~l 224 (673)
++..|...
T Consensus 175 ~p~iw~ey 182 (435)
T COG5191 175 SPRIWIEY 182 (435)
T ss_pred CchHHHHH
Confidence 99887653
No 450
>KOG1839|consensus
Probab=91.02 E-value=1.2 Score=53.67 Aligned_cols=148 Identities=25% Similarity=0.181 Sum_probs=110.0
Q ss_pred HHHHHHHHcCCHHHHHH------HHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHH
Q psy17691 121 SYIISVLLLIQVSEAEE------CYNT-ALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV--------FPEFAA 185 (673)
Q Consensus 121 ~~~~~~~~~g~~~~A~~------~~~~-al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~ 185 (673)
..+......|.+.+|.+ .+.+ .-.+.|+....+..++.++...+++++|+..-.++.-+ .|+...
T Consensus 937 e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~ 1016 (1236)
T KOG1839|consen 937 EQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKL 1016 (1236)
T ss_pred hhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHH
Confidence 33334445666776666 5552 23346888899999999999999999999998888654 244567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------
Q psy17691 186 AHSNLASVLQQQGKLTDALLHYKEAIRI--------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG------- 250 (673)
Q Consensus 186 ~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~------- 250 (673)
.+.+++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+.+.+.|+.....
T Consensus 1017 ~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l 1096 (1236)
T KOG1839|consen 1017 AYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKEL 1096 (1236)
T ss_pred HhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccch
Confidence 8889998899999999999999988876 4565667789999999999999999999999985321
Q ss_pred -CHHHHHHHHHHHHHcCCC
Q psy17691 251 -FADAHSNLASIHKDSGKR 268 (673)
Q Consensus 251 -~~~a~~~La~~~~~~g~~ 268 (673)
....+..++.++...+++
T Consensus 1097 ~~~~~~~~~a~l~~s~~df 1115 (1236)
T KOG1839|consen 1097 ETALSYHALARLFESMKDF 1115 (1236)
T ss_pred hhhhHHHHHHHHHhhhHHH
Confidence 233444555555555444
No 451
>KOG2422|consensus
Probab=90.82 E-value=22 Score=39.71 Aligned_cols=171 Identities=17% Similarity=0.188 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCChhhhcCChhhHHhhc
Q psy17691 2 IDLAIDTYRRAIEL------------QPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTREL 69 (673)
Q Consensus 2 ~~eAi~~~~kAL~l------------~P~~~~a~~~Lg~~~~~~g~~~~a~a~~~la~~l~~~g~~~~A~~~~~~~~~~l 69 (673)
|++|...|.-|.+. +|.+.+.+..++.+...+|+.+.+..+...|.-.... | +
T Consensus 254 Yeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~-----a----------~ 318 (665)
T KOG2422|consen 254 YEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDR-----A----------L 318 (665)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH-----H----------h
Confidence 56777777777664 5677888888999999888766666666555544321 1 1
Q ss_pred CCCchhhhhhhhhhcCCCcccccccccCCCCchhHHHHHHHhcCCCChhHH----HHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 70 APGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTF----SYIISVLLLIQVSEAEECYNTALRL 145 (673)
Q Consensus 70 ~p~~~~~l~~~~~~l~~~~~a~~~~~~~~~~~~~a~~~~~~~l~p~~~~~~----~~~~~~~~~g~~~~A~~~~~~al~~ 145 (673)
.|......+.+.... ..|.+...| .++..+...|-+..|.++++-.+++
T Consensus 319 hp~F~~~sg~cRL~y---------------------------~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL 371 (665)
T KOG2422|consen 319 HPNFIPFSGNCRLPY---------------------------IYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL 371 (665)
T ss_pred ccccccccccccCcc---------------------------cchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 222111111111110 123333333 2333444578888888888888888
Q ss_pred CCC-CHHHHHHHHHHH-HHcCCHHHHHHHHHHH-----HhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Q psy17691 146 CPT-HADSLNNLANIK-REQGYIEEATRLYLKA-----LEVFPEFAAAHSNLASVLQQQGK---LTDALLHYKEAIRIQP 215 (673)
Q Consensus 146 ~p~-~~~a~~~Lg~~~-~~~g~~~eA~~~~~~a-----l~~~p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~p 215 (673)
+|. ++-+...+-.+| .+..+|+=-++.++.. +..-|+.+ .-..+|..|..... -+.|...+.+|+...|
T Consensus 372 dp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 372 DPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred CCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 887 655444444433 2334444344443333 12223321 11223344444333 3455556666666555
No 452
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.70 E-value=2.7 Score=38.54 Aligned_cols=83 Identities=11% Similarity=-0.006 Sum_probs=72.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17691 187 HSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266 (673)
Q Consensus 187 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g 266 (673)
+......-...++.+++...+...--+.|+.++....-|.++...|++.+|+..++...+-.+..+.+.--++.|+..+|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33444445558899999999998888999999999999999999999999999999998888888888888999999998
Q ss_pred CCc
Q psy17691 267 KRG 269 (673)
Q Consensus 267 ~~~ 269 (673)
+.+
T Consensus 93 Dp~ 95 (153)
T TIGR02561 93 DAE 95 (153)
T ss_pred ChH
Confidence 865
No 453
>KOG1258|consensus
Probab=90.52 E-value=7.8 Score=43.32 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=93.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHH
Q psy17691 126 VLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVF-PEFAAAHSNLASVLQQQGKLTDAL 204 (673)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~ 204 (673)
....|+++.....|++++--.....+.|...+.-....|+.+-|...+.++.++. |+.+..+..-+......|++..|.
T Consensus 307 ~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~ 386 (577)
T KOG1258|consen 307 EITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK 386 (577)
T ss_pred hhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence 3457888888888888888777888888888888888888888888888888874 566777777888888888999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691 205 LHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ 239 (673)
Q Consensus 205 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~ 239 (673)
..|++..+.-|+..++-........++|+.+.+..
T Consensus 387 ~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 387 VILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 99988888888888877777888888888888774
No 454
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.50 E-value=0.8 Score=46.97 Aligned_cols=62 Identities=26% Similarity=0.380 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691 203 ALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD 264 (673)
Q Consensus 203 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~ 264 (673)
|+.+|.+|+.+.|.+...|+.+|.++...|+.=.|+-+|-+++-...-.+.+..||..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56777777777777777777777777777777777777777776655557777777777766
No 455
>KOG3616|consensus
Probab=90.41 E-value=7.9 Score=44.05 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17691 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ 35 (673)
Q Consensus 2 ~~eAi~~~~kAL~l~P~~~~a~~~Lg~~~~~~g~ 35 (673)
|+.|.. |-+.++..|+-...|..++..-...|+
T Consensus 460 f~ra~a-fles~~~~~da~amw~~laelale~~n 492 (1636)
T KOG3616|consen 460 FDRATA-FLESLEMGPDAEAMWIRLAELALEAGN 492 (1636)
T ss_pred hHHHHH-HHHhhccCccHHHHHHHHHHHHHHhcc
Confidence 344443 334467778877788888777777665
No 456
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.33 E-value=25 Score=41.36 Aligned_cols=116 Identities=22% Similarity=0.159 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----
Q psy17691 118 TTFSYIISVLLLIQVSEAEECYNTALRLCPT--H-------ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF----- 183 (673)
Q Consensus 118 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~----- 183 (673)
....++.......++.+|..+..++...-+. . ++.....|.+....|++++|++..+.++..-|.+
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r 496 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSR 496 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhh
Confidence 3445566666788999999999888776443 1 3455567888899999999999999999987765
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHH--HHHHHHHHHHHcCC
Q psy17691 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS----FAD--AYSNMGNTLKEMQD 233 (673)
Q Consensus 184 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----~~~--~~~~lg~~~~~~g~ 233 (673)
..++..+|.+..-+|++++|..+.+++.+.... .-. +.+..+.++..+|+
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred hhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 457888999999999999999999999887322 222 34456788888893
No 457
>KOG1914|consensus
Probab=90.33 E-value=6 Score=43.60 Aligned_cols=122 Identities=11% Similarity=0.101 Sum_probs=94.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy17691 140 NTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD 219 (673)
Q Consensus 140 ~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 219 (673)
++-++.+|.+.++|+.|-.-+..+ .+++..+.|++.+...|..+.+|.......+..++|+.-...|.++|..--+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 677899999999999999888777 9999999999999999999999999999999999999999999999876443 55
Q ss_pred HHH-HHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHH
Q psy17691 220 AYS-NMGNTLKEMQDIQGALQCYSRAIQ-------INPGFADAHSNLASIHK 263 (673)
Q Consensus 220 ~~~-~lg~~~~~~g~~~eA~~~~~~Al~-------l~p~~~~a~~~La~~~~ 263 (673)
.|. .+..+-...|+...+.+..-+|.+ .++....+|...+..+.
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~ 139 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLE 139 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence 554 344444555665555544444443 35666667776665543
No 458
>KOG1538|consensus
Probab=90.32 E-value=2.6 Score=47.06 Aligned_cols=109 Identities=16% Similarity=0.151 Sum_probs=70.1
Q ss_pred HHHcCCHHHHHHH----------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17691 126 VLLLIQVSEAEEC----------YNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQ 195 (673)
Q Consensus 126 ~~~~g~~~~A~~~----------~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 195 (673)
+...|+.++|+.. ++-+-+++-..-+.+..++..+.+...+.-|.+.|++.-.. ..+-..+.
T Consensus 713 LiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHv 784 (1081)
T KOG1538|consen 713 LISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHV 784 (1081)
T ss_pred hhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhhee
Confidence 3445566665543 22333334445556666666677777777777777664221 23445566
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAI 245 (673)
Q Consensus 196 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 245 (673)
+.+++.+|....++--+.- .++|+-.|..+.+..+++||.+.|.+|=
T Consensus 785 e~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 785 ETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred ecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 7888998887766543333 3478888999999999999998888764
No 459
>KOG1258|consensus
Probab=90.25 E-value=6.6 Score=43.85 Aligned_cols=139 Identities=11% Similarity=0.067 Sum_probs=114.0
Q ss_pred CHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy17691 131 QVSEAEECYNTALRL-----CPT---HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTD 202 (673)
Q Consensus 131 ~~~~A~~~~~~al~~-----~p~---~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 202 (673)
...+.+..++..++. .|- +...|......-...|+++.....|++++--.....+.|...+......|+.+-
T Consensus 270 ~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~ 349 (577)
T KOG1258|consen 270 EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSL 349 (577)
T ss_pred hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhH
Confidence 445555566666553 222 244566777777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q psy17691 203 ALLHYKEAIRIQ-PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269 (673)
Q Consensus 203 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~~ 269 (673)
|-..+.++.++. |..+..+..-+.+....|++..|...+++..+-.|+...+-..-.......|+.+
T Consensus 350 ~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~ 417 (577)
T KOG1258|consen 350 ANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLE 417 (577)
T ss_pred HHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchh
Confidence 999999988874 6677888888899999999999999999999888998888777777777777765
No 460
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=90.19 E-value=2.5 Score=44.27 Aligned_cols=81 Identities=14% Similarity=0.062 Sum_probs=60.5
Q ss_pred hhHHHHHHHcCCCCCeEEe-ccCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHH
Q psy17691 558 ANIQATAQALGLDQHRILF-SNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLA 635 (673)
Q Consensus 558 ~~~~~~~~~~g~~~~rv~~-~~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~ 635 (673)
+.+.+...+.-- .+++.. ...+|.+||++.+..||++.-.| ---|--|.|=.|++|+||+...-.++-. .|+
T Consensus 232 ~~V~~~~~~lF~-~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~np~~~-----~l~ 305 (360)
T PF07429_consen 232 QQVIQAGKELFG-AENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRDNPFWQ-----DLK 305 (360)
T ss_pred HHHHHHHHHhcC-ccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEecCChHHH-----HHH
Confidence 445555444422 367765 56999999999999999998776 4456678899999999999887776654 577
Q ss_pred hcCCCcccc
Q psy17691 636 TLGCPELIA 644 (673)
Q Consensus 636 ~~gl~~~ia 644 (673)
..|++=+..
T Consensus 306 ~~~ipVlf~ 314 (360)
T PF07429_consen 306 EQGIPVLFY 314 (360)
T ss_pred hCCCeEEec
Confidence 888876554
No 461
>KOG4014|consensus
Probab=89.86 E-value=9.2 Score=36.35 Aligned_cols=144 Identities=13% Similarity=0.061 Sum_probs=96.6
Q ss_pred CCChhHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHhhCCCCHHH
Q psy17691 114 PDDGTTFSYIISVLL--LIQVSEAEECYNTALRLCPTHADSLNNLANIKR-----EQGYIEEATRLYLKALEVFPEFAAA 186 (673)
Q Consensus 114 p~~~~~~~~~~~~~~--~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~-----~~g~~~eA~~~~~~al~~~p~~~~~ 186 (673)
...++...+++.++. +.++++|...|+.--+.+ .++...+.+|..+. ..++...|++.|+.+-. -+.+.+
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a 107 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA 107 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence 344556666666665 678888888887765443 34566667776655 34678899999998876 456777
Q ss_pred HHHHHHHHHHc-----C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------------------CCHH
Q psy17691 187 HSNLASVLQQQ-----G--KLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM------------------------QDIQ 235 (673)
Q Consensus 187 ~~~la~~~~~~-----g--~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~------------------------g~~~ 235 (673)
-.++|.++..- + +.++|.+++.++..++ +..+.++|...|..- .+.+
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMd 185 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMD 185 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHH
Confidence 77788776532 2 3778999999987764 445666666555543 4556
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17691 236 GALQCYSRAIQINPGFADAHSNLASIHKD 264 (673)
Q Consensus 236 eA~~~~~~Al~l~p~~~~a~~~La~~~~~ 264 (673)
+|.++--+|-++ +++.+-.|+.+.|..
T Consensus 186 ka~qfa~kACel--~~~~aCAN~SrMykl 212 (248)
T KOG4014|consen 186 KALQFAIKACEL--DIPQACANVSRMYKL 212 (248)
T ss_pred HHHHHHHHHHhc--CChHHHhhHHHHHHc
Confidence 777777666665 456777777777643
No 462
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.83 E-value=2.2 Score=43.25 Aligned_cols=71 Identities=17% Similarity=0.073 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy17691 186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHS 256 (673)
Q Consensus 186 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~ 256 (673)
...++=..+...++++.|..+.++.+.++|+++.-+.-.|.+|.++|.+.-|++.++..++..|+.+.+-.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 34445555666677777777777777777777777777777777777777777777777777777665543
No 463
>KOG0529|consensus
Probab=89.43 E-value=10 Score=40.61 Aligned_cols=127 Identities=17% Similarity=0.097 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----CHHHHH
Q psy17691 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQG--YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG----KLTDAL 204 (673)
Q Consensus 131 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~eA~ 204 (673)
..++-+.+...+++.+|+...+|+.+..++.+.+ ++..=++..+++++.+|.+..+|...=.+..... ...+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 5677888899999999999999999999999776 4688899999999999999888776555544332 246678
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc------CC------HHHHHHHHHHHHHhCCCCHHHHHH
Q psy17691 205 LHYKEAIRIQPSFADAYSNMGNTLKEM------QD------IQGALQCYSRAIQINPGFADAHSN 257 (673)
Q Consensus 205 ~~~~~al~~~p~~~~~~~~lg~~~~~~------g~------~~eA~~~~~~Al~l~p~~~~a~~~ 257 (673)
++..+++.-++.|-.+|.+...++..+ |. ...-++.-..|+-.+|++..+|+.
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 889999999999999999988887632 21 223334445555556666666654
No 464
>KOG0985|consensus
Probab=89.35 E-value=27 Score=41.60 Aligned_cols=125 Identities=12% Similarity=0.059 Sum_probs=68.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17691 124 ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDA 203 (673)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 203 (673)
....+.|.|++-+.++..+-+... .+.+-..|-.+|.+.++..|-.+.. ..|+.+. .-..|.-++..|.|+.|
T Consensus 1141 ~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~AyAkt~rl~elE~fi-----~gpN~A~-i~~vGdrcf~~~~y~aA 1213 (1666)
T KOG0985|consen 1141 DVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAYAKTNRLTELEEFI-----AGPNVAN-IQQVGDRCFEEKMYEAA 1213 (1666)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHHHHhchHHHHHHHh-----cCCCchh-HHHHhHHHhhhhhhHHH
Confidence 344456677777777666655422 1222333444455555555443322 2344333 23456666667777777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q psy17691 204 LLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR 268 (673)
Q Consensus 204 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~~~g~~ 268 (673)
.-+|.. ..-|..|+..+..+|+|..|...-++|- +...|.....++.+.+++
T Consensus 1214 kl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAn-----s~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1214 KLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKAN-----STKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred HHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHhchhhh
Confidence 666643 3446677777777777777777777662 344555444444444444
No 465
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.28 E-value=5.2 Score=42.69 Aligned_cols=89 Identities=18% Similarity=0.116 Sum_probs=65.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC--------CC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691 157 ANIKREQGYIEEATRLYLKALEVFP--------EF----------AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA 218 (673)
Q Consensus 157 g~~~~~~g~~~eA~~~~~~al~~~p--------~~----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 218 (673)
|..++++++|..|..-|+.+|++.. .. .-.--.|..+|...++.+.|+..--+.|.++|.+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 4455566666666666666666521 11 12334578889999999999999999999999998
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691 219 DAYSNMGNTLKEMQDIQGALQCYSRAI 245 (673)
Q Consensus 219 ~~~~~lg~~~~~~g~~~eA~~~~~~Al 245 (673)
.-+...|.|+..+.+|.+|-..+.-|.
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999998887666553
No 466
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=89.26 E-value=1.2 Score=45.66 Aligned_cols=89 Identities=16% Similarity=0.185 Sum_probs=56.8
Q ss_pred cChhhHHHHHHHHhcccCeeEEeeccCCcCCCCCCCCcccccCCCCccchhhhhccCchhhhhccCChhhhhhHHHHHHH
Q psy17691 487 IDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQA 566 (673)
Q Consensus 487 ~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (673)
......++...+++..|+..++++.+|..-. .... +.+..
T Consensus 138 ~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~-------------------------------------~~~~---~~~~~ 177 (269)
T PF05159_consen 138 SQADFLDMLESFAKENPDAKLVVKPHPDERG-------------------------------------GNKY---SYLEE 177 (269)
T ss_pred cHhHHHHHHHHHHHHCCCCEEEEEECchhhC-------------------------------------CCCh---hHhhh
Confidence 3445677888888889999999887652110 0001 22233
Q ss_pred cCCCCCeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCC
Q psy17691 567 LGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 622 (673)
Q Consensus 567 ~g~~~~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g 622 (673)
.--...++.+....+..+.+. .+|.++- -.+|+.+|||.+|.||||+.-
T Consensus 178 ~~~~~~~~~~~~~~~~~~Ll~---~s~~Vvt----inStvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 178 LPNLPNVVIIDDDVNLYELLE---QSDAVVT----INSTVGLEALLHGKPVIVFGR 226 (269)
T ss_pred hhcCCCeEEECCCCCHHHHHH---hCCEEEE----ECCHHHHHHHHcCCceEEecC
Confidence 211235666666666566555 5777652 357899999999999999654
No 467
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.76 E-value=2.1 Score=36.24 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=39.9
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17691 195 QQQGKLTDALLHYKEAIRIQPS---------FADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249 (673)
Q Consensus 195 ~~~g~~~eA~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p 249 (673)
.+.|+|.+|++.+.+.+..... ...+..++|.++...|++++|+..+++|+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4456777776666666554221 135678899999999999999999999998743
No 468
>KOG1464|consensus
Probab=88.72 E-value=29 Score=35.10 Aligned_cols=117 Identities=12% Similarity=0.084 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--H
Q psy17691 153 LNNLANIKREQGYIEEATRLYLKALEVFPE------------FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF--A 218 (673)
Q Consensus 153 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~ 218 (673)
...||.+|+..++|.+-.+.+++.-+-... -.+.|..--..|..+++-.+-...|++++.+...- +
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 346899999999888877777665443221 13455555677888888888888999999875432 2
Q ss_pred HHHH----HHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH--HHHHHHHHHHHcCCCc
Q psy17691 219 DAYS----NMGNTLKEMQDIQGALQCYSRAIQIN-----PGFAD--AHSNLASIHKDSGKRG 269 (673)
Q Consensus 219 ~~~~----~lg~~~~~~g~~~eA~~~~~~Al~l~-----p~~~~--a~~~La~~~~~~g~~~ 269 (673)
.... .=|..+.+.|++++|-..|-+|++-. |.... -|.-|+..+.+.|-..
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNP 289 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINP 289 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCC
Confidence 2222 22455778899999999998888753 22222 3455677777776443
No 469
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.67 E-value=1.4 Score=45.14 Aligned_cols=62 Identities=32% Similarity=0.501 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17691 135 AEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ 196 (673)
Q Consensus 135 A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 196 (673)
|+.+|++|+.+.|++...++.||.++...|+.-+|+-+|-+++-..--.+.+..||..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999887766668888888888877
No 470
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.62 E-value=2.4 Score=35.81 Aligned_cols=28 Identities=39% Similarity=0.496 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 186 AHSNLASVLQQQGKLTDALLHYKEAIRI 213 (673)
Q Consensus 186 ~~~~la~~~~~~g~~~eA~~~~~~al~~ 213 (673)
+..++|.++...|++++|+..+++++++
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544
No 471
>KOG3807|consensus
Probab=88.49 E-value=11 Score=38.99 Aligned_cols=129 Identities=17% Similarity=0.104 Sum_probs=79.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17691 124 ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDA 203 (673)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 203 (673)
....+..+..+-++.-..+++++|+.+.++..|+.- +.--..+|.+.++++++... ..++-..-...+|...+|
T Consensus 192 Q~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 192 QKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGE----TIYRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhccchhh
Confidence 344455677788888899999999999998888753 33346788888988887632 222233333333333333
Q ss_pred HHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHc
Q psy17691 204 LLHYKEAIRIQPSFAD--AYSNMGNTLKEMQDIQGALQCYSRAIQINPGF--ADAHSNLASIHKDS 265 (673)
Q Consensus 204 ~~~~~~al~~~p~~~~--~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~--~~a~~~La~~~~~~ 265 (673)
.. +.+ .+.. +-..|+.|-.++|+..||++.++...+-.|-. -.++-||...+.+.
T Consensus 266 ~~------rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~ 324 (556)
T KOG3807|consen 266 QL------RRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLEL 324 (556)
T ss_pred hh------hcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 21 111 2222 33567888888888888888888877666522 23445555444443
No 472
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=88.45 E-value=3.8 Score=42.41 Aligned_cols=80 Identities=16% Similarity=0.089 Sum_probs=60.2
Q ss_pred hhHHHHHHHcCCCCCeEEec-cCcChHHHHHhcccccEEecCC-CCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHH
Q psy17691 558 ANIQATAQALGLDQHRILFS-NVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLA 635 (673)
Q Consensus 558 ~~~~~~~~~~g~~~~rv~~~-~~~~~~~~~~~~~~~Di~Ld~~-p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~ 635 (673)
+.+++...+..- ++++..+ ..+|.+||++.+..|||..--| ---|--|+|=.+.+|+|||...-.++-. .|.
T Consensus 193 ~~V~~~~~~lF~-~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n~fwq-----dl~ 266 (322)
T PRK02797 193 EEVRQAGLALFG-AENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDNPFWQ-----DLT 266 (322)
T ss_pred HHHHHHHHHhcC-cccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecCCchHH-----HHH
Confidence 455555555442 4676555 6899999999999999998777 4456678899999999999987776654 477
Q ss_pred hcCCCccc
Q psy17691 636 TLGCPELI 643 (673)
Q Consensus 636 ~~gl~~~i 643 (673)
..|++=+.
T Consensus 267 e~gv~Vlf 274 (322)
T PRK02797 267 EQGLPVLF 274 (322)
T ss_pred hCCCeEEe
Confidence 77887643
No 473
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=87.97 E-value=3.4 Score=41.82 Aligned_cols=76 Identities=20% Similarity=0.028 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17691 152 SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227 (673)
Q Consensus 152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 227 (673)
...++=..+.+.++++.|..+.++.+.++|+++.-+...|.+|.+.|.+.-|++.++..++..|+++.+-......
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3445556778889999999999999999999998899999999999999999999999999999987766544433
No 474
>KOG2041|consensus
Probab=87.69 E-value=13 Score=42.22 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK 229 (673)
Q Consensus 150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 229 (673)
..++.++|..+..+..+++|.++|.+.-. .-++..+++...+|++-.. ....-|++...+-.+|..+.
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEV----LARTLPEDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHHHHHHH
Confidence 34667777777777777777777665421 1233344444444433222 22223455555555555555
Q ss_pred HcCCHHHHHHHHH
Q psy17691 230 EMQDIQGALQCYS 242 (673)
Q Consensus 230 ~~g~~~eA~~~~~ 242 (673)
..|--++|.++|-
T Consensus 864 svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYL 876 (1189)
T ss_pred hhchHHHHHHHHH
Confidence 5555555555443
No 475
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.66 E-value=4.5 Score=41.46 Aligned_cols=63 Identities=17% Similarity=0.191 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17691 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIR 212 (673)
Q Consensus 150 ~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 212 (673)
..++..++..+...|+++.++..+++.+..+|.+-..|..+-..|+..|+...|+..|++.-+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555555555555554433
No 476
>KOG3616|consensus
Probab=87.55 E-value=4.4 Score=45.96 Aligned_cols=102 Identities=19% Similarity=0.172 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17691 129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK 208 (673)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 208 (673)
..+|.+|+..++.....+. ....|-.++.-|...|+|+.|.+.|.++- ....--..|-+.|++++|.+.-+
T Consensus 745 akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHH
Confidence 3456666655554433221 12345566777888888888888887752 22233455667788888877666
Q ss_pred HHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q psy17691 209 EAIRIQPSF-ADAYSNMGNTLKEMQDIQGALQCY 241 (673)
Q Consensus 209 ~al~~~p~~-~~~~~~lg~~~~~~g~~~eA~~~~ 241 (673)
++.. |.. ...|...+.-+.+.|++.+|.+.|
T Consensus 816 e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 816 ECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 5432 322 334555566666666666665544
No 477
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=86.91 E-value=8.2 Score=46.44 Aligned_cols=130 Identities=14% Similarity=0.021 Sum_probs=91.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy17691 124 ISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQ----G---YIEEATRLYLKALEVFPEFAAAHSNLASV 193 (673)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~----g---~~~eA~~~~~~al~~~p~~~~~~~~la~~ 193 (673)
..++..+.|++|+..|++.-...|.. .++.+..|..+.++ | .+++|+..|++.- -.|.-+--|...|.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHH
Confidence 34556778999999999999998875 55778888776643 2 4666776666632 346667778888999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHH
Q psy17691 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM-----QDIQGALQCYSRAIQINPGFADA 254 (673)
Q Consensus 194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~-----g~~~eA~~~~~~Al~l~p~~~~a 254 (673)
|..+|+|+|-+++|.-|++..|+++..-...-.+..++ .+...|....--++...|.....
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISS 627 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 99999999999999999999998876433322222221 23345666666777777766543
No 478
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=86.77 E-value=9.8 Score=39.56 Aligned_cols=93 Identities=15% Similarity=0.117 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17691 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV--FPEFAAAHSNLASVLQQQGKLTDALLHYK 208 (673)
Q Consensus 131 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 208 (673)
+|..-..+|+-.....|+ +-+-.|.+....+..-.+.++...+..... -.++...+...|..+.++|+.++|...|+
T Consensus 311 DW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 311 DWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred ChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 565555666665555554 344445555555554455556555554443 22334556667778888888888888888
Q ss_pred HHHHhCCCCHHHHHHH
Q psy17691 209 EAIRIQPSFADAYSNM 224 (673)
Q Consensus 209 ~al~~~p~~~~~~~~l 224 (673)
+++.+.++..+..+.+
T Consensus 390 rAi~La~~~aer~~l~ 405 (415)
T COG4941 390 RAIALARNAAERAFLR 405 (415)
T ss_pred HHHHhcCChHHHHHHH
Confidence 8888877766654443
No 479
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.62 E-value=34 Score=37.26 Aligned_cols=125 Identities=11% Similarity=-0.073 Sum_probs=92.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy17691 123 IISVLLLIQVSEAEECYNTALRLCPTHAD-----SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ 197 (673)
Q Consensus 123 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 197 (673)
+-.+.+++++++|...|.+..+...+.+. ++.++-.-.+-+++.+.-....-..-+..|..+....-.|...+++
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ 92 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 34455688999999999999887665533 3333333334467777777777777778898888888899999999
Q ss_pred CCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 198 GKLTDALLHYKEAIRIQPSF---------------ADAYSNMGNTLKEMQDIQGALQCYSRAIQI 247 (673)
Q Consensus 198 g~~~eA~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l 247 (673)
+++.+|++.+...-+.-... ...-...+.++...|++.++...+++.+..
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 99999999887765542111 112234678899999999999999998764
No 480
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=86.30 E-value=3.8 Score=43.83 Aligned_cols=53 Identities=13% Similarity=-0.026 Sum_probs=41.6
Q ss_pred eEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhh
Q psy17691 573 RILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRV 629 (673)
Q Consensus 573 rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~ 629 (673)
.+.+.|..+-.+..+.+..||+++-. -+|.+-. |-++|+|||++-|++...|.
T Consensus 244 ~~~l~g~~sL~el~ali~~a~l~v~n--DSGp~Hl--AaA~g~P~v~lfGpt~p~~~ 296 (352)
T PRK10422 244 VTALAGKTTFPELGALIDHAQLFIGV--DSAPAHI--AAAVNTPLICLFGATDHIFW 296 (352)
T ss_pred cccccCCCCHHHHHHHHHhCCEEEec--CCHHHHH--HHHcCCCEEEEECCCCcccc
Confidence 35678999999999999999999754 3455555 45679999999998766554
No 481
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=86.25 E-value=2.4 Score=28.86 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=6.7
Q ss_pred HHHHHHHHcCCHHHHHHH
Q psy17691 189 NLASVLQQQGKLTDALLH 206 (673)
Q Consensus 189 ~la~~~~~~g~~~eA~~~ 206 (673)
.+|..+..+|++++|++.
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 333333334444444433
No 482
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.89 E-value=8.9 Score=36.64 Aligned_cols=93 Identities=13% Similarity=0.044 Sum_probs=70.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHH----HHHHHHH
Q psy17691 122 YIISVLLLIQVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPE--FAA----AHSNLAS 192 (673)
Q Consensus 122 ~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~----~~~~la~ 192 (673)
.+..+.+.|+.++|+++|.++.+..... .+.+.++-.+....+++.....+..++-..-.. +.. ....-|.
T Consensus 42 l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL 121 (177)
T PF10602_consen 42 LADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGL 121 (177)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 3445567999999999999988764332 567888889999999999999999998776332 222 3344567
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC
Q psy17691 193 VLQQQGKLTDALLHYKEAIRIQ 214 (673)
Q Consensus 193 ~~~~~g~~~eA~~~~~~al~~~ 214 (673)
.+...++|.+|.+.|-.+..-.
T Consensus 122 ~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 122 ANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHhchHHHHHHHHHccCcCC
Confidence 7788899999999987765443
No 483
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=85.82 E-value=1.3 Score=47.11 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=35.8
Q ss_pred HhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhhHHHHHH---hcCCCcccc
Q psy17691 587 RRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLA---TLGCPELIA 644 (673)
Q Consensus 587 ~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~---~~gl~~~ia 644 (673)
..++.||++|- ..||+|+|++.+|+|.|...--...+..-+..+. .+|++.+|+
T Consensus 231 ~~m~~aDlal~----~SGT~TLE~al~g~P~Vv~Yk~~~lty~iak~lv~~~~igL~Nii~ 287 (347)
T PRK14089 231 KALLEAEFAFI----CSGTATLEAALIGTPFVLAYKAKAIDYFIAKMFVKLKHIGLANIFF 287 (347)
T ss_pred HHHHhhhHHHh----cCcHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHcCCeeehHHHhc
Confidence 56778999985 4588888999999998874433333333334444 456666664
No 484
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=85.53 E-value=4.5 Score=43.07 Aligned_cols=52 Identities=13% Similarity=-0.008 Sum_probs=41.4
Q ss_pred EEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeecCCCcchhhh
Q psy17691 574 ILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRV 629 (673)
Q Consensus 574 v~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~~g~~~~~r~ 629 (673)
+.+.|..+-.+..+.+..+|+++-. -+|.+-. |-++|+|+|++-|++...+.
T Consensus 243 ~~l~g~~sL~el~ali~~a~l~Vs~--DSGp~Hl--AaA~g~p~v~Lfgpt~p~~~ 294 (344)
T TIGR02201 243 TSLAGKLTLPQLAALIDHARLFIGV--DSVPMHM--AAALGTPLVALFGPSKHIFW 294 (344)
T ss_pred cccCCCCCHHHHHHHHHhCCEEEec--CCHHHHH--HHHcCCCEEEEECCCCcccc
Confidence 4578999999999999999999765 4555554 56789999999998665544
No 485
>KOG1839|consensus
Probab=84.97 E-value=5 Score=48.75 Aligned_cols=134 Identities=20% Similarity=0.180 Sum_probs=97.9
Q ss_pred cCCCChhHHHHHH-HHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Q psy17691 112 LSPDDGTTFSYII-SVLLLIQVSEAEECYNTALRL--------CPTHADSLNNLANIKREQGYIEEATRLYLKALEV--- 179 (673)
Q Consensus 112 l~p~~~~~~~~~~-~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~--- 179 (673)
+.|+....+..+. .+...+++++|+..-+++.-+ .|+....+.+++...+..++...|...+.+++.+
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 4556666665544 445689999999988777654 2455678889999999999999999999999876
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17691 180 -----FPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS--------FADAYSNMGNTLKEMQDIQGALQCYSRAI 245 (673)
Q Consensus 180 -----~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 245 (673)
.|.-.....+++.++...++++.|+++.+.|++.+.. ....+..++.++..++++..|....+...
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 4555667789999999999999999999999986432 23445555666555555555555554443
No 486
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.70 E-value=38 Score=39.19 Aligned_cols=122 Identities=18% Similarity=0.117 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCH
Q psy17691 132 VSEAEECYNTALRLCPT----HADSLNNLANIKR-EQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKL 200 (673)
Q Consensus 132 ~~~A~~~~~~al~~~p~----~~~a~~~Lg~~~~-~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~ 200 (673)
...|+.+++-+++..+- .+.+.+.+|.++. ...++++|+.++++++.+...+ ..+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 46788888888853221 2557888999887 7899999999999998886443 23455678888888777
Q ss_pred HHHHHHHHHHHHhCCC----CHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Q psy17691 201 TDALLHYKEAIRIQPS----FADAYSNM--GNTLKEMQDIQGALQCYSRAIQIN--PGFADA 254 (673)
Q Consensus 201 ~eA~~~~~~al~~~p~----~~~~~~~l--g~~~~~~g~~~eA~~~~~~Al~l~--p~~~~a 254 (673)
. |+..+++.++...+ .....+.+ ...+...+++..|++.+++..... .+++.+
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 7 99999999887554 12222222 222333379999999999988775 344443
No 487
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.62 E-value=4.8 Score=41.25 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI 247 (673)
Q Consensus 184 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l 247 (673)
..++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4577788999999999999999999999999999999999999999999999999999987664
No 488
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=84.30 E-value=3.4 Score=28.13 Aligned_cols=33 Identities=6% Similarity=0.069 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q psy17691 219 DAYSNMGNTLKEMQDIQGALQC--YSRAIQINPGF 251 (673)
Q Consensus 219 ~~~~~lg~~~~~~g~~~eA~~~--~~~Al~l~p~~ 251 (673)
+.+..+|..+..+|++++|+.. |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5678899999999999999999 55777777653
No 489
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.13 E-value=7.1 Score=31.71 Aligned_cols=51 Identities=16% Similarity=0.166 Sum_probs=28.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHH
Q psy17691 194 LQQQGKLTDALLHYKEAIRIQPSFADAYS---NMGNTLKEMQDIQGALQCYSRA 244 (673)
Q Consensus 194 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~---~lg~~~~~~g~~~eA~~~~~~A 244 (673)
++.+.+.++|+..++++++..++..+-+. .+..+|...|+|.+++++--+=
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666555444333 3334555666666666554443
No 490
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=84.11 E-value=1.7 Score=30.02 Aligned_cols=28 Identities=36% Similarity=0.399 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17691 152 SLNNLANIKREQGYIEEATRLYLKALEV 179 (673)
Q Consensus 152 a~~~Lg~~~~~~g~~~eA~~~~~~al~~ 179 (673)
++..||.+-...++|++|+..|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455555555556666666665555554
No 491
>KOG2581|consensus
Probab=83.96 E-value=15 Score=39.26 Aligned_cols=125 Identities=15% Similarity=0.050 Sum_probs=90.0
Q ss_pred HcCCHHHHHHHHHHHHHhC-CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC-HHHHHHHHH
Q psy17691 128 LLIQVSEAEECYNTALRLC-PT--------HADSLNNLANIKREQGYIEEATRLYLKALEVF-----PEF-AAAHSNLAS 192 (673)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~-p~--------~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~-----p~~-~~~~~~la~ 192 (673)
..+++++|..+-+..+..- -. .+..|+.+..+|...|+...-...+..-+... ..- +...+.|=.
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 4678999888777665531 11 14568888889999999777666666555432 221 344556667
Q ss_pred HHHHcCCHHHHHHHHHHHHHh--CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy17691 193 VLQQQGKLTDALLHYKEAIRI--QP--SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA 252 (673)
Q Consensus 193 ~~~~~g~~~eA~~~~~~al~~--~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~ 252 (673)
.|...+.|+.|-....++.-- .. ..+...+.+|.+..-+++|+.|.+++-+|+...|++.
T Consensus 218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 788888999998887776521 11 2345677899999999999999999999999999843
No 492
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=83.93 E-value=70 Score=34.87 Aligned_cols=125 Identities=12% Similarity=0.035 Sum_probs=79.6
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17691 127 LLLIQVSEAEECYNTALRLCPTHADSLNNLANI-KREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALL 205 (673)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~-~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 205 (673)
.+..-.+.|...|-++-+..--..+++..-|.+ +..+|++.-|-..|+-.+...|+.+..-+..-..+...++-+.|..
T Consensus 408 ~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~nara 487 (660)
T COG5107 408 LRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARA 487 (660)
T ss_pred HHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHH
Confidence 344556777777777765542333344433433 4567888888888888888888887666666666777788888888
Q ss_pred HHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17691 206 HYKEAIRIQPSF--ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251 (673)
Q Consensus 206 ~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~ 251 (673)
.|+++++.-.+. ...|..+-..-..-|+.+.+...=++..+..|+.
T Consensus 488 LFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 488 LFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 888777643322 3344444444455566666666666666666653
No 493
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.88 E-value=1.4 Score=27.50 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q psy17691 220 AYSNMGNTLKEMQDIQGALQCY 241 (673)
Q Consensus 220 ~~~~lg~~~~~~g~~~eA~~~~ 241 (673)
++.++|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
No 494
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.30 E-value=1.5 Score=27.33 Aligned_cols=21 Identities=38% Similarity=0.276 Sum_probs=9.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q psy17691 153 LNNLANIKREQGYIEEATRLY 173 (673)
Q Consensus 153 ~~~Lg~~~~~~g~~~eA~~~~ 173 (673)
...+|.++..+|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344444444444444444443
No 495
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=83.02 E-value=4.4 Score=48.67 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=77.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17691 157 ANIKREQGYIEEATRLYLKALEVFPEF---AAAHSNLASVLQQQ----G---KLTDALLHYKEAIRIQPSFADAYSNMGN 226 (673)
Q Consensus 157 g~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~----g---~~~eA~~~~~~al~~~p~~~~~~~~lg~ 226 (673)
..++...+.|++|+..|++.-.-.|+. .++.+..|.++..+ | .+++|+..|++. .-.|.-+--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHH
Confidence 345667788999999999999999876 57888888887654 2 366677766653 335666777888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy17691 227 TLKEMQDIQGALQCYSRAIQINPGFADA 254 (673)
Q Consensus 227 ~~~~~g~~~eA~~~~~~Al~l~p~~~~a 254 (673)
+|.++|+++|-+++|.-|++..|+++..
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 9999999999999999999999888754
No 496
>KOG0546|consensus
Probab=82.66 E-value=1.3 Score=46.29 Aligned_cols=79 Identities=23% Similarity=0.209 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17691 185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263 (673)
Q Consensus 185 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~La~~~~ 263 (673)
....+++.+-...+.+..|+.....+++.++....+++..+..+....++++|++.++.+....|++......+...-.
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 4556678888888888888888888888888888889999999999999999999999999888888777665554433
No 497
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.60 E-value=12 Score=36.37 Aligned_cols=55 Identities=9% Similarity=0.157 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q psy17691 183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS----FADAYSNMGNTLKEMQDIQGAL 238 (673)
Q Consensus 183 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~eA~ 238 (673)
.++..+.||..|. ..+.++|+..+.+++++... +++.+..|+.++.++|+++.|-
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3555555655554 44566666666666665432 3566666666666666666653
No 498
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=82.57 E-value=2.2 Score=29.49 Aligned_cols=29 Identities=28% Similarity=0.551 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17691 219 DAYSNMGNTLKEMQDIQGALQCYSRAIQI 247 (673)
Q Consensus 219 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~l 247 (673)
+++..||.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667777777777777777777777765
No 499
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.47 E-value=5.2 Score=38.75 Aligned_cols=73 Identities=22% Similarity=0.111 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q psy17691 131 QVSEAEECYNTALRL-CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE----FAAAHSNLASVLQQQGKLTDAL 204 (673)
Q Consensus 131 ~~~~A~~~~~~al~~-~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~ 204 (673)
.-++|...|-++-.. .-++++..+.||..|. ..+.++|+..+.+++++.+. +++.+..|+.++.++|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445666655554322 1256888888888777 57789999999999988544 4888999999999999998874
No 500
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.17 E-value=2.7 Score=42.53 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=39.1
Q ss_pred CeEEeccCcChHHHHHhcccccEEecCCCCCCcchhhhhhhcCCceeec
Q psy17691 572 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 620 (673)
Q Consensus 572 ~rv~~~~~~~~~~~~~~~~~~Di~Ld~~p~~g~~t~~eal~~GvPvvt~ 620 (673)
=||+.+|.+|+++|=.++..||+-+ --|--|..-|.|+|.|.+.-
T Consensus 238 lrvvklPFvpqddyd~LL~lcD~n~----VRGEDSFVRAq~agkPflWH 282 (370)
T COG4394 238 LRVVKLPFVPQDDYDELLWLCDFNL----VRGEDSFVRAQLAGKPFLWH 282 (370)
T ss_pred eEEEEecCCcHhHHHHHHHhcccce----eecchHHHHHHHcCCCcEEE
Confidence 3789999999999999999999875 46778889999999999864
Done!