RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17691
(673 letters)
>gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41. This
family of glycosyltransferases includes O-linked
beta-N-acetylglucosamine (O-GlcNAc) transferase, an
enzyme which catalyzes the addition of O-GlcNAc to
serine and threonine residues. In addition to its
function as an O-GlcNAc transferase, human OGT, also
appears to proteolytically cleave the epigenetic
cell-cycle regulator HCF-1.
Length = 468
Score = 502 bits (1294), Expect = e-173
Identities = 216/375 (57%), Positives = 255/375 (68%), Gaps = 73/375 (19%)
Query: 323 QVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKER 382
QVMWLGYPGTSGA++MDYIITD+VTSP+ LA QYSEKLA+MP T+FIGDH QMFPHLKER
Sbjct: 104 QVMWLGYPGTSGATFMDYIITDSVTSPMELADQYSEKLAYMPHTFFIGDHAQMFPHLKER 163
Query: 383 FIVSGKYSEK----------------LAFMPDTYFIGDHNQMFPHLKERFIVSG------ 420
IV K + + L + D + + ++ +R VS
Sbjct: 164 VIVKFKSNGRIYDNSIVINGIDLKPLLDKLEDVKIVRE--KVVDAGSKRDSVSTEVNLPV 221
Query: 421 ---------KTMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGL 471
MI +GQ+Q ++NG+ +QNGLAT QTN K ATGEEVP++I++T+RQQYGL
Sbjct: 222 IEVPTTEPVIQMINTGQIQITINGVPIQNGLATTQTNNKAATGEEVPRTIIVTTRQQYGL 281
Query: 472 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRP 531
P+DAIVYCNFNQLYKIDPSTLQMWVN
Sbjct: 282 PDDAIVYCNFNQLYKIDPSTLQMWVN---------------------------------- 307
Query: 532 SASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL 591
+LK VPNS+LWLL+FPAVGEANIQA AQ +GL RI+FSNVA KEEHVRRGQL
Sbjct: 308 ------ILKRVPNSVLWLLRFPAVGEANIQAYAQEMGLPPRRIVFSNVAPKEEHVRRGQL 361
Query: 592 ADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQ 651
ADVCLDTPLCNGHTT MDVLW GTP+VT+P ETLASRVAASQL TLGCPELIA+ +EY+
Sbjct: 362 ADVCLDTPLCNGHTTGMDVLWAGTPMVTMPLETLASRVAASQLTTLGCPELIAKDRQEYE 421
Query: 652 DIAIRLGTDRDYCEK 666
DIA++LGTDR+Y K
Sbjct: 422 DIAVKLGTDREYLRK 436
Score = 111 bits (279), Expect = 5e-26
Identities = 40/46 (86%), Positives = 45/46 (97%)
Query: 75 IRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTF 120
+RIGYVSSDFGNHPTSHLMQS+PGMHN+S+VE+FCYALSPDDGT F
Sbjct: 1 LRIGYVSSDFGNHPTSHLMQSIPGMHNRSKVEVFCYALSPDDGTNF 46
>gnl|CDD|226428 COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase,
SPINDLY family [Posttranslational modification, protein
turnover, chaperones].
Length = 620
Score = 156 bits (395), Expect = 3e-40
Identities = 126/564 (22%), Positives = 187/564 (33%), Gaps = 177/564 (31%)
Query: 149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL-----TDA 203
H L + G EA +A+++ P++ L + Q+Q T+
Sbjct: 141 HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWPEEAPTNL 200
Query: 204 LLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263
L + I ++ + LK + L+ S+ F N+ K
Sbjct: 201 LSQLALFLGIYGFSLAYLAD--DPLKNLAIANQLLKILSQNAPELVRFPIRDENIKRNGK 258
Query: 264 DSGKRGFFIRTDLNS---AYFWLLLLDAHSN----------------------LASIHK- 297
R ++ +DL S + + + H A++ K
Sbjct: 259 R--LRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAVEKW 316
Query: 298 -DSVVMSLLQIIHEFI-----VGFDLTFY-------LF-------QVMWLGYPGTSGASY 337
M +I + + DL + +F QV WLGYP T+G+
Sbjct: 317 YPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAPIQVSWLGYPATTGSPN 376
Query: 338 MDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKYSEKLAFMP 397
MDY I+D Y + + YSEKL +P
Sbjct: 377 MDYFISD---------------------PYTVPPTAE------------EYYSEKLWRLP 403
Query: 398 DTYFIGDHNQMFPHLKERFIVSGKTMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEV 457
Y D G +
Sbjct: 404 QCYQPVD---------------GFEPVTPP------------------------------ 418
Query: 458 PQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGE 517
SR Q GLPEDA+V+C FN +KI P +W+ +L AVPNS+L L E
Sbjct: 419 ------PSRAQLGLPEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAE 472
Query: 518 ANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFS 577
N A ++ A+ G+D R+ F
Sbjct: 473 IN--------------------------------------ARLRDLAEREGVDSERLRFL 494
Query: 578 NVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATL 637
A E+H R +AD+ LDT GHTT+ D LW G PV+T GE ASR AS
Sbjct: 495 PPAPNEDHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNA 554
Query: 638 GCPELIARTHKEYQDIAIRLGTDR 661
G PEL+A + +Y + A+ G+DR
Sbjct: 555 GIPELVADSRADYVEKAVAFGSDR 578
Score = 50.5 bits (121), Expect = 2e-06
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 37 NFPDAYCNLANALKEKGQIN-VLHKPPYKYTRELAP----GNRIRIGYVSSDFGNHPTSH 91
D + +I ++ G R+R+GY+SSD +H
Sbjct: 217 YLADDPLKNLAIANQLLKILSQNAPELVRFPIRDENIKRNGKRLRVGYLSSDLRSHAVGF 276
Query: 92 LMQSVPGMHNKSRVEIFCYALSP--DDGTT 119
L++ V H++ + E+F Y+L P D
Sbjct: 277 LLRWVFEYHDRDKFEVFAYSLGPPHTDALQ 306
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found
in a variety of organisms including bacteria,
cyanobacteria, yeast, fungi, plants, and humans in
various subcellular locations; involved in a variety of
functions including protein-protein interactions, but
common features in the interaction partners have not
been defined; involved in chaperone, cell-cycle,
transciption, and protein transport complexes; the
number of TPR motifs varies among proteins (1,3-11,13
15,16,19); 5-6 tandem repeats generate a right-handed
helical structure with an amphipathic channel that is
thought to accomodate an alpha-helix of a target
protein; it has been proposed that TPR proteins
preferably interact with WD-40 repeat proteins, but in
many instances several TPR-proteins seem to aggregate to
multi-protein complexes; examples of TPR-proteins
include, Cdc16p, Cdc23p and Cdc27p components of the
cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal
targeting signals, the Tom70p co-receptor for
mitochondrial targeting signals, Ser/Thr phosphatase 5C
and the p110 subunit of O-GlcNAc transferase; three
copies of the repeat are present here.
Length = 100
Score = 90.1 bits (224), Expect = 8e-22
Identities = 35/97 (36%), Positives = 58/97 (59%)
Query: 153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIR 212
L NL N+ + G +EA Y KALE+ P+ A A+ NLA+ + GK +AL Y++A+
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 213 IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
+ P A AY N+G ++ + AL+ Y +A++++P
Sbjct: 63 LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99
Score = 80.9 bits (200), Expect = 2e-18
Identities = 34/86 (39%), Positives = 47/86 (54%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
EA E Y AL L P +AD+ NLA + G EEA Y KALE+ P+ A A+ NL
Sbjct: 15 DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNL 74
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPS 216
+ GK +AL Y++A+ + P+
Sbjct: 75 GLAYYKLGKYEEALEAYEKALELDPN 100
Score = 79.0 bits (195), Expect = 7e-18
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248
NL ++ + G +AL +Y++A+ + P ADAY N+ ++ + AL+ Y +A++++
Sbjct: 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64
Query: 249 PGFADAHSNLASIHKDSGK 267
P A A+ NL + GK
Sbjct: 65 PDNAKAYYNLGLAYYKLGK 83
Score = 51.6 bits (124), Expect = 3e-08
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
D A++ Y +A+EL P+ DAY NLA A + G+ P+ AY NL
Sbjct: 17 DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGL 76
Query: 48 ALKEKGQIN 56
A + G+
Sbjct: 77 AYYKLGKYE 85
Score = 50.1 bits (120), Expect = 1e-07
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 219 DAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+A N+GN ++ D AL+ Y +A++++P ADA+ NLA+ + GK
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK 49
Score = 42.4 bits (100), Expect = 5e-05
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEK 52
+ A++ Y +A+EL P+ AY NL A + G+ A L
Sbjct: 51 EEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
Score = 30.8 bits (70), Expect = 0.49
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 15/49 (30%)
Query: 21 DAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQ 54
+A NL N + G P+ DAY NLA A + G+
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK 49
>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat.
Length = 69
Score = 64.3 bits (157), Expect = 4e-13
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM-QDIQGALQCYS 242
A A NL + L + G +A+ Y++A+ + P A+AY N+ ++ +D + AL+
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 243 RAIQINP 249
+A++++P
Sbjct: 63 KALELDP 69
Score = 55.4 bits (134), Expect = 6e-10
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGK-LTDALLHYK 208
A++L NL N + G +EA Y KALE+ P+ A A+ NLA + GK +AL +
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 209 EAIRIQP 215
+A+ + P
Sbjct: 63 KALELDP 69
Score = 55.0 bits (133), Expect = 7e-10
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR 268
A+A N+GN L ++ D A++ Y +A++++P A+A+ NLA + GK
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKD 53
Score = 46.9 bits (112), Expect = 5e-07
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALK 50
D AI+ Y +A+EL P+ +AY NLA A + G+ ++ +A +L AL+
Sbjct: 20 DEAIEAYEKALELDPDNAEAYYNLALAYLKLGK-DYEEALEDLEKALE 66
Score = 42.7 bits (101), Expect = 2e-05
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGY-IEEATRLYLKALEVFP 181
EA E Y AL L P +A++ NLA + G EEA KALE+ P
Sbjct: 21 EAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69
>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only].
Length = 291
Score = 66.0 bits (159), Expect = 9e-12
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Query: 134 EAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAA-AHSN 189
EA E Y AL L P A++L L + G EEA L KAL++ P+ A A N
Sbjct: 148 EALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLN 207
Query: 190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
L + + GK +AL +Y++A+ + P A+A N+ L E+ + AL+ +A++++P
Sbjct: 208 LGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267
Score = 65.6 bits (158), Expect = 1e-11
Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 5/139 (3%)
Query: 134 EAEECYNTALRLCPTHADSLNNLA-NIKREQGYIEEATRLYLKALEVFP---EFAAAHSN 189
EA E AL L P + LA E G EEA LY KALE+ P E A A
Sbjct: 113 EALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLA 172
Query: 190 LASVLQQQGKLTDALLHYKEAIRIQPS-FADAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248
L ++L+ G+ +AL ++A+++ P A+A N+G ++ + AL+ Y +A++++
Sbjct: 173 LGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD 232
Query: 249 PGFADAHSNLASIHKDSGK 267
P A+A NLA + + G+
Sbjct: 233 PDNAEALYNLALLLLELGR 251
Score = 63.7 bits (153), Expect = 6e-11
Identities = 47/148 (31%), Positives = 74/148 (50%), Gaps = 7/148 (4%)
Query: 127 LLLIQVSEAEECYNTALRLC--PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA 184
L L ++ EA E AL L P A++L NL + G EEA L KAL + P+
Sbjct: 70 LKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD 129
Query: 185 AAHSNLA-SVLQQQGKLTDALLHYKEAIRIQPS---FADAYSNMGNTLKEMQDIQGALQC 240
A + LA L + G +AL Y++A+ + P A+A +G L+ + + AL+
Sbjct: 130 LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189
Query: 241 YSRAIQINPG-FADAHSNLASIHKDSGK 267
+A+++NP A+A NL ++ GK
Sbjct: 190 LEKALKLNPDDDAEALLNLGLLYLKLGK 217
Score = 53.3 bits (126), Expect = 1e-07
Identities = 50/227 (22%), Positives = 88/227 (38%), Gaps = 7/227 (3%)
Query: 14 ELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGN 73
+A L AL+ + PN +A NL L+ G+ + + LA
Sbjct: 70 LKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE---LLEKALALDP 126
Query: 74 RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVS 133
+ G L + + L+ + + L +
Sbjct: 127 DPDLAEALLALGAL--YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYE 184
Query: 134 EAEECYNTALRLCP-THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 192
EA E AL+L P A++L NL + + G EEA Y KALE+ P+ A A NLA
Sbjct: 185 EALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLAL 244
Query: 193 VLQQQGKLTDALLHYKEAIRIQPS-FADAYSNMGNTLKEMQDIQGAL 238
+L + G+ +AL ++A+ + P + + + + ++ ++ A
Sbjct: 245 LLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAEALELLEKAD 291
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat
lipoprotein. This protein family occurs in strictly
within a subset of Gram-negative bacterial species with
the proposed PEP-CTERM/exosortase system, analogous to
the LPXTG/sortase system common in Gram-positive
bacteria. This protein occurs in a species if and only
if a transmembrane histidine kinase (TIGR02916) and a
DNA-binding response regulator (TIGR02915) also occur.
The present of tetratricopeptide repeats (TPR) suggests
protein-protein interaction, possibly for the regulation
of PEP-CTERM protein expression, since many PEP-CTERM
proteins in these genomes are preceded by a proposed DNA
binding site for the response regulator.
Length = 899
Score = 65.5 bits (160), Expect = 6e-11
Identities = 30/129 (23%), Positives = 52/129 (40%)
Query: 127 LLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAA 186
L L Q+ A++ Y AL + P + LA + + +EA L + L P A
Sbjct: 136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDA 195
Query: 187 HSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQ 246
+L G + AL Y++AI ++P+ + L E + + A + ++
Sbjct: 196 LLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK 255
Query: 247 INPGFADAH 255
P AH
Sbjct: 256 KAPNSPLAH 264
Score = 57.4 bits (139), Expect = 2e-08
Identities = 27/99 (27%), Positives = 43/99 (43%)
Query: 163 QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS 222
G +E A + Y +AL + P A LA + + + +A E + P DA
Sbjct: 138 LGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALL 197
Query: 223 NMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASI 261
G+ L + +I+ AL Y +AI + P LA+I
Sbjct: 198 LKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATI 236
Score = 57.0 bits (138), Expect = 2e-08
Identities = 33/184 (17%), Positives = 69/184 (37%), Gaps = 35/184 (19%)
Query: 114 PDDGTTFSYIISVLLLIQ-VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRL 172
PD+ + + + ++ L +++A E + AL + P + NLA I ++G ++A +
Sbjct: 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521
Query: 173 YLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIR-------------------- 212
+ K L + P+ A LA + + G +A+ ++A
Sbjct: 522 FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG 581
Query: 213 --------------IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL 258
P +A+ +G D+ A+ + + + + P A A L
Sbjct: 582 QLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL 641
Query: 259 ASIH 262
A +
Sbjct: 642 ADAY 645
Score = 56.6 bits (137), Expect = 3e-08
Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Query: 133 SEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 192
+EA + L+ P A LA + Q ++A + Y ++ P+ A +NLA
Sbjct: 753 AEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAW 812
Query: 193 VLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA 252
+ + K AL + + A+++ P+ +G L E + AL +A+ I P A
Sbjct: 813 LYLEL-KDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAA 871
Query: 253 DAHSNLASIHKDSGKR 268
+LA +G++
Sbjct: 872 AIRYHLALALLATGRK 887
Score = 52.0 bits (125), Expect = 9e-07
Identities = 63/276 (22%), Positives = 102/276 (36%), Gaps = 48/276 (17%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKP 61
I+LA+ YR+AI L+PN LA L E G+ + + A+AL +K
Sbjct: 209 IELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKH---ADALLKK--------- 256
Query: 62 PYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNK---SRVEIFCYALSPDDGT 118
N P +H ++++ K E AL
Sbjct: 257 ----------------------APNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--- 291
Query: 119 TFSYIISVLL-------LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATR 171
Y+ ++LL L + +A + N L+ P + LA+I+ G ++EA
Sbjct: 292 -PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIA 350
Query: 172 LYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM 231
AL + P+ AA S L G A + +A + P A A + +G +
Sbjct: 351 TLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQ 410
Query: 232 QDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
D A+ A Q++P A L + SG+
Sbjct: 411 GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446
Score = 49.3 bits (118), Expect = 5e-06
Identities = 50/242 (20%), Positives = 92/242 (38%), Gaps = 30/242 (12%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQPN--------FPDAYCNLANALKEKGQIN 56
AI + +RA+EL+P+ +A LA L + + A + +G +
Sbjct: 654 AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLY 713
Query: 57 VLHK------PPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY 110
+ K Y+ + AP ++ I H G ++ + +
Sbjct: 714 LRQKDYPAAIQAYRKALKRAPSSQNAIKL-----------HRALLASGNTAEAVKTLEAW 762
Query: 111 ALS--PDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIE 167
L P+D + + + L +A + Y T ++ P +A LNNLA + E
Sbjct: 763 -LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDP 820
Query: 168 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227
A +AL++ P A L +L ++G+ AL ++A+ I P A ++
Sbjct: 821 RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880
Query: 228 LK 229
L
Sbjct: 881 LL 882
Score = 49.3 bits (118), Expect = 6e-06
Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 34/171 (19%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
+ EA + L P + D+L ++ G IE A Y KA+ + P A L
Sbjct: 174 RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLAL 233
Query: 191 ASVL----------------------------------QQQGKLTDALLHYKEAIRIQPS 216
A++L Q+ DA ++A++ P
Sbjct: 234 ATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE 293
Query: 217 FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ A G + ++ +++ A Q ++ ++ P A LASI G+
Sbjct: 294 YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR 344
Score = 48.5 bits (116), Expect = 1e-05
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 5/160 (3%)
Query: 111 ALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCP--THADSLNNLANIKREQGYIE 167
L P++ + + IS L SEA TA +L P AD L L+ ++ Q +
Sbjct: 391 ELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ--FD 448
Query: 168 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227
+A K + P+ A+ H+ L ++ +G L A +++A+ I+P F A +N+
Sbjct: 449 KALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARI 508
Query: 228 LKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ + A+Q + + + I+P A LA ++ +G
Sbjct: 509 DIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGN 548
Score = 47.4 bits (113), Expect = 2e-05
Identities = 44/158 (27%), Positives = 63/158 (39%), Gaps = 1/158 (0%)
Query: 111 ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
L PDD S + L L +A E A L P +A + L K QG EA
Sbjct: 357 GLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEA 416
Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK 229
A ++ PE A L + G+ AL K+ + QP A ++ +G
Sbjct: 417 IADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYL 476
Query: 230 EMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
D+ A + + +A+ I P F A +NLA I G
Sbjct: 477 GKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN 514
Score = 46.6 bits (111), Expect = 4e-05
Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 6/150 (4%)
Query: 123 IISVLLLIQ-----VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKAL 177
+L Q +++A + L L P A +L LA+ +A +AL
Sbjct: 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRAL 662
Query: 178 EVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGA 237
E+ P+ A LA +L + A K + P A + G+ +D A
Sbjct: 663 ELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA 722
Query: 238 LQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+Q Y +A++ P + L SG
Sbjct: 723 IQAYRKALKRAPS-SQNAIKLHRALLASGN 751
Score = 42.8 bits (101), Expect = 7e-04
Identities = 28/138 (20%), Positives = 40/138 (28%), Gaps = 7/138 (5%)
Query: 135 AEECYNTALRLCPTHADSLNNLANIKREQG----YIEEATRLYLKALEVFPEFAAAHSNL 190
AE+ AL L L LA QG ++E L E A +
Sbjct: 75 AEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDE---GAAELLALR 131
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
G+L A Y++A+ I P A + A + +PG
Sbjct: 132 GLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPG 191
Query: 251 FADAHSNLASIHKDSGKR 268
DA + G
Sbjct: 192 NVDALLLKGDLLLSLGNI 209
Score = 38.9 bits (91), Expect = 0.010
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
A + Y AL+ P+ + + L G EA + L+ P A + LA +
Sbjct: 721 AAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAEL 779
Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253
Q A+ HY+ ++ P A +N+ E++D + AL+ RA+++ P
Sbjct: 780 YLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPR-ALEYAERALKLAPNIPA 838
Score = 37.0 bits (86), Expect = 0.038
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAI----- 245
A Q+ K A++ K A++ P+ A+A +G + D A + +A+
Sbjct: 29 AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP 88
Query: 246 --QINPGFADA 254
Q+ P A A
Sbjct: 89 KNQVLPLLARA 99
>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat.
Length = 78
Score = 56.6 bits (137), Expect = 2e-10
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVF-------PEFAAAHSNLASVLQQQGKLTD 202
A +LNNLA + R G +EA L KALE+ PE A A +NLA + G +
Sbjct: 5 AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64
Query: 203 ALLHYKEAIRIQPS 216
AL + ++A+ ++ +
Sbjct: 65 ALEYLEKALALREA 78
Score = 53.5 bits (129), Expect = 4e-09
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ-------PSFADAYSNMGNTLKEMQD 233
P+ AAA +NLA VL++ G +AL ++A+ + P A A +N+ + D
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 234 IQGALQCYSRAIQINP 249
AL+ +A+ +
Sbjct: 62 YDEALEYLEKALALRE 77
Score = 43.9 bits (104), Expect = 8e-06
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 114 PDDGTTFSYIISVLLLI-QVSEAEECYNTALRLC-------PTHADSLNNLANIKREQGY 165
PD + + VL + EA E AL L P A +LNNLA + G
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 166 IEEATRLYLKALEVFPE 182
+EA KAL +
Sbjct: 62 YDEALEYLEKALALREA 78
Score = 37.7 bits (88), Expect = 0.001
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 215 PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI-------NPGFADAHSNLASIHKDSGK 267
P A A +N+ L+ + D AL+ +A+++ +P A A +NLA ++ G
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein
PilW. Members of this family are designated PilF in ref
(PMID:8973346) and PilW in ref (PMID:15612916). This
outer membrane protein is required both for pilus
stability and for pilus function such as adherence to
human cells. Members of this family contain copies of
the TPR (tetratricopeptide repeat) domain.
Length = 234
Score = 57.7 bits (140), Expect = 2e-09
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Query: 141 TALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL 200
AL P + LA ++ G +E+A + +AL + P +N + L QQGK
Sbjct: 56 KALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY 115
Query: 201 TDALLHYKEAIRIQ--PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL 258
A+ +++AI P A + N G + D A + +RA+QI+P ++ L
Sbjct: 116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL 175
Query: 259 ASIHKDSGKRG 269
A ++ G+
Sbjct: 176 AELYYLRGQYK 186
Score = 55.8 bits (135), Expect = 1e-08
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 162 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAY 221
EQG +E A KALE P+ A+ LA QQ G+L A ++ A+ + P+ D
Sbjct: 43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVL 102
Query: 222 SNMGNTLKEMQDIQGALQCYSRAIQIN--PGFADAHSNLASIHKDSGKRG 269
+N G L + + A+Q + +AI+ P A + N +G
Sbjct: 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD 152
Score = 45.0 bits (107), Expect = 4e-05
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALE--VFPEFAAAHS 188
++ +AE+ + AL L P + D LNN +QG E+A + + +A+E ++P+ A +
Sbjct: 80 ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLE 139
Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM 224
N + G A + A++I P ++ +
Sbjct: 140 NAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL 175
Score = 43.5 bits (103), Expect = 1e-04
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSR 243
A LA +QG L A + +A+ P AY + +++ +++ A + R
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90
Query: 244 AIQINPGFADAHSN 257
A+ +NP D +N
Sbjct: 91 ALTLNPNNGDVLNN 104
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 54.2 bits (130), Expect = 1e-07
Identities = 30/140 (21%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 111 ALSPDDGTTFSYIISVLLLIQV---SEAEECYNTALRLCPTHADSLNNLANIKREQGYIE 167
++ D T SYI + +++ +AEE ++ AL+L D + A + +G
Sbjct: 357 SIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA 416
Query: 168 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227
+A + Y K++++ P+F +H L ++G + ++ ++ + P D Y+ G
Sbjct: 417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGEL 476
Query: 228 LKEMQDIQGALQCYSRAIQI 247
L + A++ + AI++
Sbjct: 477 LLDQNKFDEAIEKFDTAIEL 496
Score = 38.0 bits (88), Expect = 0.015
Identities = 61/272 (22%), Positives = 104/272 (38%), Gaps = 58/272 (21%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALK--------EKGQIN 56
A+ ++IEL P +Y A+ E G P+ + + A L + Q++
Sbjct: 350 ALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH 409
Query: 57 VLHK------PPYKYTRELAPGN---RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
+ Y+ + +L P I++G T + S+ R
Sbjct: 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV---------TQYKEGSIASSMATFRRCK 460
Query: 108 FCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRL-------CPTHADSLNN-LAN 158
+ +PD ++Y +LL + EA E ++TA+ L +N LA
Sbjct: 461 KNFPEAPD---VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517
Query: 159 IKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL-------------- 204
+ +Q +IE A L KAL + PE A + +A +L QQG + +AL
Sbjct: 518 FQWKQDFIE-AENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576
Query: 205 -----LHYKEAIRIQPSFADAYSNMGNTLKEM 231
+ Y EA R Q + Y + + L+ M
Sbjct: 577 ELVQAISYAEATRTQIQVQEDYPVLASKLQGM 608
Score = 36.9 bits (85), Expect = 0.041
Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 3/138 (2%)
Query: 133 SEAEECYNTAL---RLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSN 189
EA + AL +L A +LN K +G EA K++E+ P ++
Sbjct: 311 EEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIK 370
Query: 190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
AS+ + G A + +A+++ D Y + + A + Y ++I ++P
Sbjct: 371 RASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP 430
Query: 250 GFADAHSNLASIHKDSGK 267
F +H L G
Sbjct: 431 DFIFSHIQLGVTQYKEGS 448
Score = 34.2 bits (78), Expect = 0.28
Identities = 28/134 (20%), Positives = 58/134 (43%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
EA + ++ L P S A++ E G ++A + KAL++ E + + A +
Sbjct: 349 EALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL 408
Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253
+G+ A Y+++I + P F ++ +G T + I ++ + R + P D
Sbjct: 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD 468
Query: 254 AHSNLASIHKDSGK 267
++ + D K
Sbjct: 469 VYNYYGELLLDQNK 482
>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 250
Score = 52.0 bits (125), Expect = 3e-07
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALE--VFPEFAAAHS 188
+ A+E Y AL L P + D LNN QG EEA + + +AL + E +
Sbjct: 84 ENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLE 143
Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSR 243
NL + G+ A + K A+ + P F A + + D A R
Sbjct: 144 NLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198
Score = 47.0 bits (112), Expect = 1e-05
Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Query: 135 AEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVL 194
A++ AL P++ + A+ ++ G + A Y KAL + P +N + L
Sbjct: 54 AKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113
Query: 195 QQQGKLTDALLHYKEAIRIQPSF---ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251
QG+ +A+ ++ A+ P++ +D N+G + A + RA++++P F
Sbjct: 114 CAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF 172
Query: 252 ADAHSNLASIHKDSGKRG 269
A LA +H +G
Sbjct: 173 PPALLELARLHYKAGDYA 190
Score = 40.5 bits (95), Expect = 0.002
Identities = 25/85 (29%), Positives = 41/85 (48%)
Query: 162 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAY 221
+QG +A + KALE P + AH A Q+ G+ A Y++A+ + P+ D
Sbjct: 47 QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVL 106
Query: 222 SNMGNTLKEMQDIQGALQCYSRAIQ 246
+N G L + A+Q + RA+
Sbjct: 107 NNYGAFLCAQGRPEEAMQQFERALA 131
Score = 37.0 bits (86), Expect = 0.020
Identities = 19/76 (25%), Positives = 35/76 (46%)
Query: 182 EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCY 241
E A A LA QQG A + ++A+ PS+ A+ + +++ + A + Y
Sbjct: 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESY 92
Query: 242 SRAIQINPGFADAHSN 257
+A+ + P D +N
Sbjct: 93 RKALSLAPNNGDVLNN 108
Score = 32.0 bits (73), Expect = 0.87
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ 35
D A + +RA+EL P FP A LA + G
Sbjct: 156 DQAEEYLKRALELDPQFPPALLELARLHYKAGD 188
>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat.
Length = 65
Score = 47.3 bits (113), Expect = 3e-07
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 156 LANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP 215
LA G +EA AL +P A A L L +QG+L +A + A+ P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 216 S 216
Sbjct: 63 D 63
Score = 41.1 bits (97), Expect = 6e-05
Identities = 14/61 (22%), Positives = 23/61 (37%)
Query: 190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
LA + G +AL + A+ P A+A +G L + A A+ +P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 250 G 250
Sbjct: 63 D 63
Score = 33.8 bits (78), Expect = 0.020
Identities = 16/48 (33%), Positives = 19/48 (39%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFP 181
EA AL P A++L L QG + EA L AL P
Sbjct: 15 EALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Score = 29.6 bits (67), Expect = 0.71
Identities = 9/44 (20%), Positives = 13/44 (29%)
Query: 224 MGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ D AL A+ P A+A L G+
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGR 46
Score = 29.6 bits (67), Expect = 0.74
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQP 36
D A+ A+ P +A L AL +G+
Sbjct: 14 DEALAALEAALARYPLAAEALLLLGEALLRQGRL 47
>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat.
Length = 34
Score = 44.7 bits (107), Expect = 1e-06
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251
A A N+GN ++ AL+ Y +A+++NP
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
Score = 40.1 bits (95), Expect = 7e-05
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF 217
A A NL + + GK +AL +Y++A+ + P+
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
Score = 33.2 bits (77), Expect = 0.016
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF 183
A +L NL N + G +EA Y KALE+ P
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
Score = 27.8 bits (63), Expect = 1.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 3 DLAIDTYRRAIELQPNF 19
D A++ Y +A+EL PN
Sbjct: 18 DEALEYYEKALELNPNN 34
>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats. Repeats present in 4
or more copies in proteins. Contain a minimum of 34
amino acids each and self-associate via a "knobs and
holes" mechanism.
Length = 34
Score = 42.0 bits (100), Expect = 1e-05
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251
A+A N+GN ++ D AL+ Y +A++++P
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
Score = 38.6 bits (91), Expect = 2e-04
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF 217
A A NL + + G +AL +Y++A+ + P+
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
Score = 30.9 bits (71), Expect = 0.13
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF 183
A++L NL N + G +EA Y KALE+ P
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
Score = 27.0 bits (61), Expect = 2.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 2 IDLAIDTYRRAIELQPNF 19
D A++ Y +A+EL PN
Sbjct: 17 YDEALEYYEKALELDPNN 34
>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat.
Length = 34
Score = 40.3 bits (95), Expect = 5e-05
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 9 YRRAIELQPNFPDAYCNLANALKEKGQPN 37
Y +A+EL PN +AY NLA L GQ +
Sbjct: 2 YEKALELDPNNAEAYYNLALLLLNLGQYD 30
Score = 37.9 bits (89), Expect = 3e-04
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 206 HYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ 239
Y++A+ + P+ A+AY N+ L + ALQ
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
Score = 36.4 bits (85), Expect = 0.001
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 138 CYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
Y AL L P +A++ NLA + G +EA
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEA 32
Score = 36.0 bits (84), Expect = 0.002
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 172 LYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL 204
LY KALE+ P A A+ NLA +L G+ +AL
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEAL 33
Score = 31.4 bits (72), Expect = 0.067
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 240 CYSRAIQINPGFADAHSNLASIHKDSGK 267
Y +A++++P A+A+ NLA + + G+
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQ 28
>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export
porin PgaA. Members of this protein family are the
poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin
PgaA of Gram-negative bacteria. There is no counterpart
in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis
systems of Gram-positive bacteria such as Staphylococcus
epidermidis. The PGA polysaccharide adhesin is a
critical determinant of biofilm formation. The conserved
C-terminal domain of this outer membrane protein is
preceded by a variable number of TPR repeats.
Length = 800
Score = 46.2 bits (110), Expect = 5e-05
Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 16/161 (9%)
Query: 132 VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191
+ E A L LA R + ++A LY K L+ P LA
Sbjct: 73 IDVCERY-----SPVGLPARVLEALAKAYRNEKQWDKALELYRKLLQRDPNNPDGLLGLA 127
Query: 192 SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251
L GK +AL + KE + P+ A Y + L+ +D ALQ + +A+ + P
Sbjct: 128 LTLADAGKDAEALKYLKEYVARFPTDAARYEALAYVLRAAEDHLDALQAWQQALTLEPD- 186
Query: 252 ADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNL 292
+ ++ + I T L + L + +L
Sbjct: 187 ----------NPEAALELYRILTRLGAPPAAARLAKQYPDL 217
Score = 38.9 bits (91), Expect = 0.009
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKAL-EVFPEFAAAHSN 189
Q +A E Y L+ P + D L LA + G EA YLK FP AA +
Sbjct: 101 QWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEA-LKYLKEYVARFPTDAARYEA 159
Query: 190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAY 221
LA VL+ DAL +++A+ ++P +A
Sbjct: 160 LAYVLRAAEDHLDALQAWQQALTLEPDNPEAA 191
>gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat.
Length = 42
Score = 37.6 bits (88), Expect = 7e-04
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEV 179
A SLNNLA R QG EEA L +AL +
Sbjct: 2 AASLNNLARALRAQGRYEEAEELLEEALAI 31
Score = 33.3 bits (77), Expect = 0.018
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQ 214
AA+ +NLA L+ QG+ +A +EA+ I+
Sbjct: 2 AASLNNLARALRAQGRYEEAEELLEEALAIR 32
>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat. This Pfam entry
includes outlying Tetratricopeptide-like repeats (TPR)
that are not matched by pfam00515.
Length = 34
Score = 36.3 bits (85), Expect = 0.001
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251
A+A N+G ++ D + AL+ Y +A++++P
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
Score = 35.2 bits (82), Expect = 0.003
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQP 215
A A NL + G +AL Y++A+ + P
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32
Score = 32.5 bits (75), Expect = 0.029
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF 183
A++L NL + G EEA Y KALE+ P
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR
repeats [Intracellular trafficking and secretion].
Length = 257
Score = 40.5 bits (95), Expect = 0.001
Identities = 25/73 (34%), Positives = 34/73 (46%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
EA A RL PT ++ N L + G +EA R Y +ALE+ P + +NL
Sbjct: 115 NFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNL 174
Query: 191 ASVLQQQGKLTDA 203
L +G L DA
Sbjct: 175 GMSLLLRGDLEDA 187
Score = 38.2 bits (89), Expect = 0.009
Identities = 26/143 (18%), Positives = 55/143 (38%), Gaps = 1/143 (0%)
Query: 117 GTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKA 176
S L + Q A A L S+ LA +G + + + K+
Sbjct: 34 AKATGAPESSLAMRQTQGAAAAL-GAAVLRNPEDLSIAKLATALYLRGDADSSLAVLQKS 92
Query: 177 LEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQG 236
+P+ + + G +A+ ++A R+ P+ +A++ +G L ++
Sbjct: 93 AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDE 152
Query: 237 ALQCYSRAIQINPGFADAHSNLA 259
A + Y +A+++ P +NL
Sbjct: 153 ARRAYRQALELAPNEPSIANNLG 175
Score = 36.6 bits (85), Expect = 0.028
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 111 ALSPDDGTTFSYI-ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
L+P D ++ + ++ L + EA Y AL L P NNL +G +E+A
Sbjct: 128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDA 187
Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK 229
L L A + NLA V+ QG +A E I +Q ++ +N L+
Sbjct: 188 ETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA-----EDIAVQELLSEQAANNVAALR 242
Query: 230 EMQDIQGA 237
GA
Sbjct: 243 AAASQSGA 250
>gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3;
Provisional.
Length = 172
Score = 37.0 bits (86), Expect = 0.014
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 20/114 (17%)
Query: 133 SEAEECYNTALRLCPTHAD---SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSN 189
+EA E Y AL+L D L N+ I G ++A Y +ALE+ P+ +A +N
Sbjct: 52 AEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111
Query: 190 LASVL-------QQQGKLTDALLHY-------KEAIRIQPSFADAYSNMGNTLK 229
+A + ++ G +A + K+AIR+ P + Y N LK
Sbjct: 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP---NNYIEAQNWLK 162
Score = 33.5 bits (77), Expect = 0.18
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLA-------NALKEKGQPNFPDAYCNLA 46
D A++ Y +A+EL P P A N+A +E G + +A + A
Sbjct: 89 DKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKA 139
Score = 31.6 bits (72), Expect = 0.72
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 195 QQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDI-------QGALQCYSRAIQI 247
Q G+ +AL +Y+EA++++ D L M I AL+ Y +A+++
Sbjct: 46 QADGEYAEALENYEEALKLEEDPNDR----SYILYNMGIIYASNGEHDKALEYYHQALEL 101
Query: 248 NPGFADAHSNLASIHKDSGKR 268
NP A +N+A I+ G++
Sbjct: 102 NPKQPSALNNIAVIYHKRGEK 122
>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR
repeats [General function prediction only].
Length = 484
Score = 37.4 bits (87), Expect = 0.025
Identities = 29/147 (19%), Positives = 47/147 (31%), Gaps = 1/147 (0%)
Query: 124 ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF 183
+ L Q EA + + P + L +I E +EA KAL + P
Sbjct: 314 LQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS 373
Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSR 243
NLA L + GK +A+ + P + + + E+ + AL +
Sbjct: 374 PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433
Query: 244 AIQINPGFADAHSNLASIHKDSGKRGF 270
+ A K GF
Sbjct: 434 GYALAGRLEQAII-FLMRASQQVKLGF 459
>gnl|CDD|222121 pfam13428, TPR_14, Tetratricopeptide repeat.
Length = 44
Score = 31.4 bits (71), Expect = 0.11
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
+L LA G ++EA L +AL + P+ A LA +
Sbjct: 1 PAALLALARALLALGDLDEALALLRRALALDPDDPEALLLLARL 44
Score = 31.0 bits (70), Expect = 0.16
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASI 261
A + L + D+ AL RA+ ++P +A LA +
Sbjct: 1 PAALLALARALLALGDLDEALALLRRALALDPDDPEALLLLARL 44
Score = 29.4 bits (66), Expect = 0.47
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
AA LA L G L +AL + A+ + P +A +
Sbjct: 1 PAALLALARALLALGDLDEALALLRRALALDPDDPEALLLLA 42
Score = 28.7 bits (64), Expect = 0.96
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANA 29
+D A+ RRA+ L P+ P+A LA
Sbjct: 17 LDEALALLRRALALDPDDPEALLLLARL 44
>gnl|CDD|198111 smart01043, BTAD, Bacterial transcriptional activator domain.
Found in the DNRI/REDD/AFSR family of regulators. This
region of AFSR along with the C terminal region is
capable of independently directing actinorhodin
production. This family contains TPR repeats.
Length = 145
Score = 33.0 bits (76), Expect = 0.17
Identities = 17/58 (29%), Positives = 24/58 (41%)
Query: 156 LANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI 213
LA G EEA L + L + P H L L + G+ +AL Y+ R+
Sbjct: 67 LAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRLRRL 124
>gnl|CDD|221958 pfam13176, TPR_7, Tetratricopeptide repeat.
Length = 36
Score = 30.3 bits (69), Expect = 0.19
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 152 SLNNLANIKREQGYIEEATRLYLKALEV 179
+L+NL + R+ G E+A LY +AL +
Sbjct: 1 ALSNLGRLYRKLGDYEKAISLYERALAL 28
Score = 28.7 bits (65), Expect = 0.61
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA 220
A SNL + ++ G A+ Y+ A+ + D
Sbjct: 1 ALSNLGRLYRKLGDYEKAISLYERALALAKDPEDR 35
>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1;
Provisional.
Length = 356
Score = 34.0 bits (78), Expect = 0.22
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
A LY +A+++ P A +++ A + G T+A+ +AI + PS A AY G
Sbjct: 19 ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT 78
Query: 227 T---LKEMQDIQGALQ 239
L+E Q + AL+
Sbjct: 79 ACMKLEEYQTAKAALE 94
Score = 30.5 bits (69), Expect = 2.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANA 29
LA+D Y +AI+L PN + Y + A A
Sbjct: 19 ALAVDLYTQAIDLDPNNAELYADRAQA 45
Score = 29.4 bits (66), Expect = 7.2
Identities = 12/49 (24%), Positives = 28/49 (57%)
Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH 255
Y +AI + P+ A+ Y++ ++ + A+ ++AI+++P A A+
Sbjct: 25 YTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAY 73
>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat.
Length = 34
Score = 30.1 bits (69), Expect = 0.22
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
A AY +G ++ D + A + Y +A++++P
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDP 32
Score = 27.8 bits (63), Expect = 1.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF 183
A + L I + G EEA Y KALE+ P
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
Score = 26.7 bits (60), Expect = 4.1
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF 217
A A+ L + Q G +A +Y++A+ + P+
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
>gnl|CDD|217381 pfam03134, TB2_DP1_HVA22, TB2/DP1, HVA22 family. This family
includes members from a wide variety of eukaryotes. It
includes the TB2/DP1 (deleted in polyposis) protein,
which in humans is deleted in severe forms of familial
adenomatous polyposis, an autosomal dominant oncological
inherited disease. The family also includes the plant
protein of known similarity to TB2/DP1, the HVA22
abscisic acid-induced protein, which is thought to be a
regulatory protein.
Length = 94
Score = 31.8 bits (73), Expect = 0.23
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 300 VVMSLLQIIHEFIVGF--DLTFY----LFQVMWLGYPGTSGASYM 338
VV S L + F + FY L ++WL P T GASY+
Sbjct: 41 VVYSFLTLFESFSDIILSWIPFYYELKLLFLVWLVLPKTQGASYI 85
>gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General
function prediction only].
Length = 297
Score = 32.9 bits (75), Expect = 0.45
Identities = 16/74 (21%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 191 ASVLQQQGKLTDAL-------LHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSR 243
A +L ++G L D+L + +A+ I+P + ++ +G L + + A + +
Sbjct: 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS 124
Query: 244 AIQINPGFADAHSN 257
++++P + AH N
Sbjct: 125 VLELDPTYNYAHLN 138
>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function
prediction only].
Length = 292
Score = 32.7 bits (74), Expect = 0.61
Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 22/148 (14%)
Query: 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGK-----LTDALLHYKEAIR-------- 212
+A Y A A A NL + G+ L AL +Y++A +
Sbjct: 93 KTKAADWYRCAAA--DGLAEALFNLGLMYAN-GRGVPLDLVKALKYYEKAAKLGNVEAAL 149
Query: 213 IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFI 272
AY + L D + AL Y +A ++ G DA L ++ ++G +
Sbjct: 150 AMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL--GNPDAQLLLGRMY----EKGLGV 203
Query: 273 RTDLNSAYFWLLLLDAHSNLASIHKDSV 300
DL A+ W + A+ + +
Sbjct: 204 PRDLKKAFRWYKKAAEQGDGAACYNLGL 231
>gnl|CDD|176112 cd08420, PBP2_CysL_like, C-terminal substrate binding domain of
LysR-type transcriptional regulator CysL, which
activates the transcription of the cysJI operon encoding
sulfite reductase, contains the type 2 periplasmic
binding fold. CysL, also known as YwfK, is a regular of
sulfur metabolism in Bacillus subtilis. Sulfur is
required for the synthesis of proteins and essential
cofactors in all living organism. Sulfur can be
assimilated either from inorganic sources (sulfate and
thiosulfate), or from organic sources (sulfate esters,
sulfamates, and sulfonates). CysL activates the
transcription of the cysJI operon encoding sulfite
reductase, which reduces sulfite to sulfide. Both cysL
mutant and cysJI mutant are unable to grow using sulfate
or sulfite as the sulfur source. Like other LysR-type
regulators, CysL also negatively regulates its own
transcription. In Escherichia coli, three LysR-type
activators are involved in the regulation of sulfur
metabolism: CysB, Cbl and MetR. The topology of this
substrate-binding domain is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis.
Length = 201
Score = 31.3 bits (72), Expect = 1.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 628 RVAASQLATLGC---PELIARTHKEYQDIAIRL 657
R+ AS T+G P L+AR K Y ++ + L
Sbjct: 3 RIGAST--TIGEYLLPRLLARFRKRYPEVRVSL 33
>gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional.
Length = 1157
Score = 32.0 bits (73), Expect = 1.2
Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
+++AE Y A ++ T + ++ L ++ + A R Y +AL + P A L
Sbjct: 366 NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425
Query: 191 ASVLQQQGKLTDALLHYKEAI--RIQPSFA--------DAYSNMGNTLKEMQDIQGALQC 240
A++ +QQ + L + ++ + S D + L+ A +
Sbjct: 426 ANLYRQQS--PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAEL 483
Query: 241 YSRAIQINPG 250
+ + ++PG
Sbjct: 484 QRQRLALDPG 493
>gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat)
[General function prediction only].
Length = 287
Score = 30.5 bits (69), Expect = 2.3
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 135 AEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE--FAAAH 187
A E YN AL L P A L + G + A Y + LE+ PE AA
Sbjct: 14 AAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAAL 68
>gnl|CDD|220721 pfam10373, EST1_DNA_bind, Est1 DNA/RNA binding domain. Est1 is a
protein which recruits or activates telomerase at the
site of polymerisation. This is the DNA/RNA binding
domain of EST1.
Length = 276
Score = 30.0 bits (68), Expect = 3.3
Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 23/124 (18%)
Query: 169 ATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL 228
A R YL A + P ++ L + G DA+ +Y ++ ++ F A +N+
Sbjct: 1 ALRYYLLASLLLPSSGEPYNQLGVIALYVGNHLDAVYYYLRSLAVRNPFPTAKNNLELLF 60
Query: 229 KEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLDA 288
++++ F + ++K + + L + L L
Sbjct: 61 EKIK------------------FLADLVSQELLNKGKEESKSDLLKRLVI---YFLRL-- 97
Query: 289 HSNL 292
H L
Sbjct: 98 HGIL 101
>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response
chaperone LcrH/SycD. Genes in this family are found in
type III secretion operons. LcrH, from Yersinia is
believed to have a regulatory function in the
low-calcium response of the secretion system. The same
protein is also known as SycD (SYC = Specific Yop
Chaperone) for its chaperone role. In Pseudomonas, where
the homolog is known as PcrH, the chaperone role has
been demonstrated and the regulatory role appears to be
absent. ScyD/LcrH contains three central
tetratricopeptide-like repeats that are predicted to
fold into an all-alpha-helical array.
Length = 135
Score = 29.2 bits (66), Expect = 3.4
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI 247
LA+ Q + +A+ Y A + P Y + L + + + AL+ AI+I
Sbjct: 57 LAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114
>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational
modification, protein turnover, chaperones].
Length = 287
Score = 30.0 bits (68), Expect = 3.7
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL 228
L G+ +DALL Y+ A+R+ + + L
Sbjct: 162 LGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEAL 200
Score = 30.0 bits (68), Expect = 3.7
Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 7/104 (6%)
Query: 141 TALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVL-----Q 195
T L+ P A+ + L G +A Y AL + + LA L Q
Sbjct: 147 THLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ 206
Query: 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ 239
Q ALL ++A+ + P+ A S + E D A
Sbjct: 207 QMTAKARALL--RQALALDPANIRALSLLAFAAFEQGDYAEAAA 248
>gnl|CDD|153299 cd07615, BAR_Endophilin_A3, The Bin/Amphiphysin/Rvs (BAR) domain of
Endophilin-A3. BAR domains are dimerization, lipid
binding and curvature sensing modules found in many
different proteins with diverse functions. Endophilins
are accessory proteins localized at synapses that
interacts with the endocytic proteins, dynamin and
synaptojanin. They are essential for synaptic vesicle
formation from the plasma membrane. They interact with
voltage-gated calcium channels, thus linking vesicle
endocytosis to calcium regulation. They also play roles
in virus budding, mitochondrial morphology maintenance,
receptor-mediated endocytosis inhibition, and endosomal
sorting. Endophilins contain an N-terminal N-BAR domain
(BAR domain with an additional N-terminal amphipathic
helix), followed by a variable region containing proline
clusters, and a C-terminal SH3 domain. They are
classified into two types, A and B. Endophilin-A
proteins are enriched in the brain and play multiple
roles in receptor-mediated endocytosis. Endophilin-A3
(or endophilin-3) is also referred to as SH3P13 (SH3
domain containing protein 13) or SH3GL3 (SH3 domain
containing Grb2-like protein 3). It regulates
Arp2/3-dependent actin filament assembly during
endocytosis. It binds N-WASP through its SH3 domain and
enhances the ability of N-WASP to activate the Arp2/3
complex. Endophilin-A3 co-localizes with the vesicular
glutamate transporter 1 (VGLUT1), and may play an
important role in the synaptic release of glutamate.
Length = 223
Score = 30.0 bits (67), Expect = 3.8
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 195 QQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADA 254
Q +G L D +L Y + + +F +A ++G ++K+M +++ +L I + F D
Sbjct: 64 QTEGLLGDCMLRYGRELGEESTFGNALLDVGESMKQMAEVKDSLD-----INVKQNFIDP 118
Query: 255 HSNL 258
L
Sbjct: 119 LQLL 122
>gnl|CDD|221956 pfam13174, TPR_6, Tetratricopeptide repeat.
Length = 33
Score = 26.3 bits (59), Expect = 4.3
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 219 DAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
DA + ++ D A + R ++ P
Sbjct: 1 DALYKLALAYLKLGDTDEAKEALERLLKRYPD 32
>gnl|CDD|153298 cd07614, BAR_Endophilin_A2, The Bin/Amphiphysin/Rvs (BAR) domain of
Endophilin-A2. BAR domains are dimerization, lipid
binding and curvature sensing modules found in many
different proteins with diverse functions. Endophilins
are accessory proteins, localized at synapses, which
interact with the endocytic proteins, dynamin and
synaptojanin. They are essential for synaptic vesicle
formation from the plasma membrane. They interact with
voltage-gated calcium channels, thus linking vesicle
endocytosis to calcium regulation. They also play roles
in virus budding, mitochondrial morphology maintenance,
receptor-mediated endocytosis inhibition, and endosomal
sorting. Endophilins contain an N-terminal N-BAR domain
(BAR domain with an additional N-terminal amphipathic
helix), followed by a variable region containing proline
clusters, and a C-terminal SH3 domain. They are
classified into two types, A and B. Endophilin-A
proteins are enriched in the brain and play multiple
roles in receptor-mediated endocytosis. Endophilin-A2
(or endophilin-2) is also referred to as SH3P8 (SH3
domain containing protein 8) or SH3GL1 (SH3 domain
containing Grb2-like protein 1). It localizes to
presynaptic nerve terminals and forms heterodimers with
endophilin-A1 through their BAR domains. Endophilin-A2
binds dynamin 1, synaptojanin 1, and the
beta1-adrenergic receptor cytoplasmic tail through its
SH3 domain.
Length = 223
Score = 29.7 bits (66), Expect = 4.3
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 195 QQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADA 254
Q +G L + ++ Y + + + +F DA + G ++K + +++ +L I++ F D
Sbjct: 64 QSEGLLGETMIRYGKELGDESNFGDALLDAGESMKRLAEVKDSLD-----IEVKQNFIDP 118
Query: 255 HSNL 258
NL
Sbjct: 119 LQNL 122
>gnl|CDD|216950 pfam02259, FAT, FAT domain. The FAT domain is named after FRAP,
ATM and TRRAP.
Length = 350
Score = 30.0 bits (68), Expect = 4.5
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 233 DIQGALQCYSRAIQINPGFADAHSNLASIH 262
LQ Y A+Q + + A + A +
Sbjct: 272 KKDEILQAYRTAVQFDDQWYKAWHSWALAN 301
>gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3.
Length = 168
Score = 29.2 bits (66), Expect = 4.6
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 195 QQQGKLTDALLHYKEAIRIQPSFADAYS------NMGNTLKEMQDIQGALQCYSRAIQIN 248
Q +G+ +AL +Y EA+R++ D Y N+G + AL+ Y +A++ N
Sbjct: 46 QSEGEYAEALQNYYEAMRLE---IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN 102
Query: 249 PGFADAHSNLASI 261
P A +N+A I
Sbjct: 103 PFLPQALNNMAVI 115
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 29.6 bits (67), Expect = 5.9
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 621 PGETLASRVAASQLA--TLGCPELIARTHKEYQDIAIR 656
+ A VA QL+ + G P+LI RTH +Y ++R
Sbjct: 176 ATPSPADEVAFFQLSGGSTGTPKLIPRTHNDY-YYSVR 212
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 29.7 bits (67), Expect = 6.0
Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 18/106 (16%)
Query: 552 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLAD-----VCLDTPLCNGHTT 606
F + EA + A+ +R + AK +R +A L+ LC+
Sbjct: 120 FASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEAALCHPAGL 179
Query: 607 SMDVLWTGTPVVTLPGETLASRVAASQLA--TLGCPELIARTHKEY 650
A VA QL+ T G P+LI RTH +Y
Sbjct: 180 F--TPAPPAD---------AGEVAFFQLSGGTTGTPKLIPRTHNDY 214
>gnl|CDD|236875 PRK11189, PRK11189, lipoprotein NlpI; Provisional.
Length = 296
Score = 29.5 bits (67), Expect = 6.2
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
A+ ++P ADAY+ +G L + + A + + ++++P + A+ N
Sbjct: 90 ALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRG 139
>gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed.
Length = 352
Score = 29.3 bits (65), Expect = 7.4
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 169 ATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL 228
A RL +K + V PE AH GKL A+ + E I I+ +F DA + N
Sbjct: 94 AARLGMKCIIVIPEGKIAH----------GKLAQAVAYGAEIISIEGNFDDALKAVRNIA 143
Query: 229 KE 230
E
Sbjct: 144 AE 145
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 29.4 bits (66), Expect = 8.3
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 611 LWTGTPVVTLP-GETLASRVAASQLA--TLGCPELIARTHKEY 650
LW +P + T + VA QL+ + G P+LI RTH +Y
Sbjct: 165 LWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDY 207
>gnl|CDD|143485 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzymes, Ornithine and Diaminopimelate
Decarboxylases, and Related Enzymes. This family
includes eukaryotic ornithine decarboxylase (ODC, EC
4.1.1.17), diaminopimelate decarboxylase (DapDC, EC
4.1.1.20), plant and prokaryotic biosynthetic arginine
decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine
decarboxylase (CANSDC), and ODC-like enzymes from
diverse bacterial species. These proteins are fold type
III PLP-dependent enzymes that catalyze essential steps
in the biosynthesis of polyamine and lysine. ODC and
ADC participate in alternative pathways of the
biosynthesis of putrescine, which is the precursor of
aliphatic polyamines in many organisms. ODC catalyzes
the direct synthesis of putrescine from L-ornithine,
while ADC converts L-arginine to agmatine, which is
hydrolysed to putrescine by agmatinase in a pathway that
exists only in plants and bacteria. DapDC converts
meso-2,6-diaminoheptanedioate to L-lysine, which is the
final step of lysine biosynthesis. CANSDC catalyzes the
decarboxylation of carboxynorspermidine, which is the
last step in the synthesis of norspermidine. The
PLP-dependent decarboxylases in this family contain an
N-terminal PLP-binding TIM-barrel domain and a
C-terminal beta-sandwich domain, similar to bacterial
alanine racemases. They exist as homodimers with active
sites that lie at the interface between the TIM barrel
domain of one subunit and the beta-sandwich domain of
the other subunit. Prokaryotic ornithine, lysine and
biodegradative arginine decarboxylases are fold type I
PLP-dependent enzymes and are not included in this
family.
Length = 368
Score = 29.2 bits (66), Expect = 8.4
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 11/66 (16%)
Query: 539 LKAVPNSIL------WLLKFPAV--GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ 590
+KA PN + F GE + A A G+ RI+F+ A +
Sbjct: 32 VKANPNPHVLRTLAEAGTGFDVASKGELAL---ALAAGVPPERIIFTGPAKSVSEIEAAL 88
Query: 591 LADVCL 596
+ V
Sbjct: 89 ASGVDH 94
>gnl|CDD|218750 pfam05789, Baculo_VP1054, Baculovirus VP1054 protein. This family
consists of several VP1054 proteins from the
Baculoviruses. VP1054 is a virus structural protein
required for nucleocapsid assembly.
Length = 314
Score = 28.8 bits (65), Expect = 9.3
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 49 LKEKGQINVLHKPPYKYTRELA--PGNRIRIGYVSSDFGNHPTSHLM 93
LK+K N +K K R L P N+ RI +FG +P H+M
Sbjct: 205 LKQKNPFNDANKSISKIIRNLGKCPNNKNRIKCCDLNFGGNPPGHIM 251
>gnl|CDD|218587 pfam05426, Alginate_lyase, Alginate lyase. This family contains
several bacterial alginate lyase proteins. Alginate is a
family of 1-4-linked copolymers of beta -D-mannuronic
acid (M) and alpha -L-guluronic acid (G). It is produced
by brown algae and by some bacteria belonging to the
genera Azotobacter and Pseudomonas. Alginate lyases
catalyze the depolymerisation of alginates by beta
-elimination, generating a molecule containing
4-deoxy-L-erythro-hex-4-enepyranosyluronate at the
nonreducing end. This family adopts an all alpha fold.
Length = 275
Score = 28.6 bits (64), Expect = 9.8
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 350 LALA------SQYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKYSEKLAFMPDT 399
LALA +Y+EK + +F+ +M P+LK + G+ + + + DT
Sbjct: 65 LALAYYLTGDERYAEKAGELLRAWFLDPATRMNPNLKYAQAIPGRNTGRGIGIIDT 120
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.401
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,240,726
Number of extensions: 3374322
Number of successful extensions: 3118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3055
Number of HSP's successfully gapped: 151
Length of query: 673
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 570
Effective length of database: 6,369,140
Effective search space: 3630409800
Effective search space used: 3630409800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)