RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17691
(673 letters)
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 348 bits (893), Expect = e-110
Identities = 261/755 (34%), Positives = 346/755 (45%), Gaps = 193/755 (25%)
Query: 15 LQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLH 59
P D+ NLAN +E+G P F A+ NLA+ L+++G++
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL---- 59
Query: 60 KPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALS--PDDG 117
+ A + + A+ P
Sbjct: 60 --------QEA----------------------------------LMHYKEAIRISPTFA 77
Query: 118 TTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKA 176
+S + + L + V A +CY A+++ P AD+ +NLA+I ++ G I EA Y A
Sbjct: 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTA 137
Query: 177 LEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQG 236
L++ P+F A+ NLA LQ TD K+ + I + + + + +
Sbjct: 138 LKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK-NRLPSVHPHHSMLYP 196
Query: 237 ALQCYSRAIQINPGFADAHSNLAS------IHKDSGKRGFFIRTDLNS--------AYFW 282
+ +AI G KD +R S ++
Sbjct: 197 LSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLM 256
Query: 283 LLLLDAHSNLA----------------------------SIHKDSVVMSLLQIIHEFIVG 314
+ H+ + + IH+ +
Sbjct: 257 QSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIH 316
Query: 315 FDLTFYLF----------------QVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSE 358
+ + Q MWLGYPGTSGA +MDYIITD TSP +A QYSE
Sbjct: 317 ILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSE 376
Query: 359 KLAFMPDTYFIGDHNQMFPHLKERFIVSGK----------------YSEKLAFMPDTYFI 402
KLA+MP T+FIGDH MFPHLK++ ++ K L +PD +
Sbjct: 377 KLAYMPHTFFIGDHANMFPHLKKKAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIV 436
Query: 403 --------------GDHNQMFPHLKERFIVSGKTMIASGQVQTSVNGIVLQNGLATNQTN 448
M + MI GQ+Q ++NG + NGLAT Q N
Sbjct: 437 KMKCPDGGDNADSSNTALNMPVIPMNTIAEAVIEMINRGQIQITINGFSISNGLATTQIN 496
Query: 449 TKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILW 508
K ATGEEVP++I++T+R QYGLPEDAIVYCNFNQLYKIDPSTLQMW N
Sbjct: 497 NKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPSTLQMWAN----------- 545
Query: 509 LLKFPAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALG 568
+LK VPNS+LWLL+FPAVGE NIQ AQ +G
Sbjct: 546 -----------------------------ILKRVPNSVLWLLRFPAVGEPNIQQYAQNMG 576
Query: 569 LDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASR 628
L Q+RI+FS VA KEEHVRRGQLADVCLDTPLCNGHTT MDVLW GTP+VT+PGETLASR
Sbjct: 577 LPQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASR 636
Query: 629 VAASQLATLGCPELIARTHKEYQDIAIRLGTDRDY 663
VAASQL LGC ELIA+ +EY+DIA++LGTD +Y
Sbjct: 637 VAASQLTCLGCLELIAKNRQEYEDIAVKLGTDLEY 671
Score = 146 bits (369), Expect = 7e-37
Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 1/163 (0%)
Query: 111 ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
P + + + ++ + EA Y AL + P A + +NLA++ ++QG ++EA
Sbjct: 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 62
Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK 229
Y +A+ + P FA A+SN+ + L++ + AL Y AI+I P+FADA+SN+ + K
Sbjct: 63 LMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK 122
Query: 230 EMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFI 272
+ +I A+ Y A+++ P F DA+ NLA + +
Sbjct: 123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165
Score = 73.3 bits (179), Expect = 1e-13
Identities = 66/157 (42%), Positives = 85/157 (54%), Gaps = 38/157 (24%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKG-------- 53
I AI +YR A++L+P+FPDAYCNLA+ L+ D ++
Sbjct: 127 IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPS 186
Query: 54 -----------------------------QINVLHKPPYKYTRELAPGNRI-RIGYVSSD 83
+INVLHKPPY++ ++L + R+GYVSSD
Sbjct: 187 VHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSD 246
Query: 84 FGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTF 120
FGNHPTSHLMQS+PGMHN + E+FCYALSPDDGT F
Sbjct: 247 FGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNF 283
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 269 bits (690), Expect = 3e-82
Identities = 128/608 (21%), Positives = 191/608 (31%), Gaps = 188/608 (30%)
Query: 111 ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
AL P + + V + +EA A P H L + + G E A
Sbjct: 51 ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAA 110
Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQG---KLTDALLHYKEAIRIQPSFADAYSNMGN 226
Y +A ++ PE + L + ++ L + A+ + ++ +
Sbjct: 111 AAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSE 170
Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR---GFFIRTDLNS---AY 280
A + + A A + LA S GF +
Sbjct: 171 DAS-------AAEQLACARTRAQAIAASVRPLAPTRVRSKGPLRVGFVS-NGFGAHPTGL 222
Query: 281 FWLLLLDAHS-------------------------NLASIHKDSVVMSLLQIIHEFIV-- 313
+ L +A AS D + L + I
Sbjct: 223 LTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQASTLHDVTALGHLATA-KHIRHH 281
Query: 314 GFDLTFYL------------------FQVMWLGYPGTSGASYMDYIITDAVTSPLALASQ 355
G DL F L QV WL YPGTSGA +MDY++ DA P AL
Sbjct: 282 GIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPF 341
Query: 356 YSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKER 415
YSE + + + D +++
Sbjct: 342 YSEHVLR---------------------------------LQGAFQPSDTSRVVAEPP-- 366
Query: 416 FIVSGKTMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDA 475
SR Q GLPE
Sbjct: 367 -------------------------------------------------SRTQCGLPEQG 377
Query: 476 IVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSAST 535
+V C FN YK++P ++ + VL+ VP+S+LWLL P +A +
Sbjct: 378 VVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADARL--------------- 422
Query: 536 SIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC 595
+A A A G+D R++F +++ R + AD+
Sbjct: 423 -------------------------RAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLF 457
Query: 596 LDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAI 655
LDT N HTT+ D LWTG PV+T PGET A+RVA S LG E+ + A+
Sbjct: 458 LDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAV 517
Query: 656 RLGTDRDY 663
L +D
Sbjct: 518 ALASDPAA 525
Score = 139 bits (353), Expect = 3e-35
Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 6/166 (3%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
A+R P + LA+ + G + L + P A + L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
V Q + +A + ++A P +G+ L++ + A Y+RA Q+ P
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123
Query: 251 FADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNLASIH 296
+ L + + + + ++
Sbjct: 124 EPYITAQLLNWRRRLCDWRAL------DVLSAQVRAAVAQGVGAVE 163
Score = 119 bits (301), Expect = 1e-28
Identities = 63/415 (15%), Positives = 105/415 (25%), Gaps = 85/415 (20%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
+ R A+ +P A+ LA+A G P P+A L
Sbjct: 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64
Query: 47 NALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE 106
+ + L Q+
Sbjct: 65 RVRWTQQRHAEAAV------------------------------LLQQAS---------- 84
Query: 107 IFCYALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGY 165
+P+ ++ L Q A Y A +L P L N +R
Sbjct: 85 ----DAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCD 140
Query: 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
L + + A A + + A A + A + +
Sbjct: 141 WRALDVLSAQVRAAVAQGVGAVEPFAFLSED----ASAAEQLACARTRAQAIAASVRPLA 196
Query: 226 NTLKEMQD------IQGALQCYSRAIQINPGFAD---------AHSNLASIHKDSGKRGF 270
T + + + + F H S S R
Sbjct: 197 PTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTR 256
Query: 271 FIRTDLNSAYFWLLLLDAHSNLASIHKDSVVMSLLQIIHEFIVGFDLTFYL---FQVMWL 327
+ + L + I + + ++ QV WL
Sbjct: 257 LAQAS---TLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWL 313
Query: 328 GYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKER 382
YPGTSGA +MDY++ DA P AL YSE + + + D +++ R
Sbjct: 314 AYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSRVVAEPPSR 368
Score = 119 bits (299), Expect = 2e-28
Identities = 17/105 (16%), Positives = 30/105 (28%)
Query: 163 QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS 222
A+ P+ A LA G T + + + + P +A +
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 223 NMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+G Q A +A P L +D+G+
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQ 106
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 212 bits (543), Expect = 9e-63
Identities = 91/329 (27%), Positives = 144/329 (43%), Gaps = 58/329 (17%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
+ AI+ YR A+ L+P+F D Y NLA AL G P+ +L
Sbjct: 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142
Query: 47 NALKEKGQ----INVLHKPPYKYTRELAPGN---RIRIGYVSSDFGNHPTSHLMQSVPGM 99
N LK G+ Y E P +G V + G +
Sbjct: 143 NLLKALGRLEEAKAC-----YLKAIETQPNFAVAWSNLGCVFNAQGEIWLA--------- 188
Query: 100 HNKSRVEIFCY----ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLN 154
I + L P+ + + +VL A Y AL L P HA
Sbjct: 189 -------IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241
Query: 155 NLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ 214
NLA + EQG I+ A Y +A+E+ P F A+ NLA+ L+++G + +A Y A+R+
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 215 PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR----GF 270
P+ AD+ +N+ N +E +I+ A++ Y +A+++ P FA AHSNLAS+ + GK
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361
Query: 271 FIRT-DLNSAYFWLLLLDAHSNLASIHKD 298
+ ++ + DA+SN+ + K+
Sbjct: 362 YKEAIRISPTFA-----DAYSNMGNTLKE 385
Score = 208 bits (531), Expect = 5e-61
Identities = 81/322 (25%), Positives = 126/322 (39%), Gaps = 78/322 (24%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
+D + AI+ P +AY NL N KE+GQ P+F D Y NLA
Sbjct: 49 LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 108
Query: 47 NALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE 106
AL G + E A
Sbjct: 109 AALVAAGDM------------EGA------------------------------------ 120
Query: 107 IFCY----ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKR 161
+ Y +PD S + ++L L ++ EA+ CY A+ P A + +NL +
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Query: 162 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAY 221
QG I A + KA+ + P F A+ NL +VL++ A+ Y A+ + P+ A +
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240
Query: 222 SNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG----FFIRT-DL 276
N+ E I A+ Y RAI++ P F DA+ NLA+ K+ G + L
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300
Query: 277 NSAYFWLLLLDAHSNLASIHKD 298
+ D+ +NLA+I ++
Sbjct: 301 CPTHA-----DSLNNLANIKRE 317
Score = 205 bits (524), Expect = 4e-60
Identities = 79/322 (24%), Positives = 129/322 (40%), Gaps = 78/322 (24%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
+ A + +P+ L++ + + P +AY NL
Sbjct: 15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLG 74
Query: 47 NALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE 106
N KE+GQ+ + A
Sbjct: 75 NVYKERGQL------------QEA------------------------------------ 86
Query: 107 IFCY----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKR 161
I Y L PD + + + L+ + A + Y +AL+ P ++L N+ +
Sbjct: 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146
Query: 162 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAY 221
G +EEA YLKA+E P FA A SNL V QG++ A+ H+++A+ + P+F DAY
Sbjct: 147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY 206
Query: 222 SNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKR----GFFIR-TDL 276
N+GN LKE + A+ Y RA+ ++P A H NLA ++ + G + R +L
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 277 NSAYFWLLLLDAHSNLASIHKD 298
+ DA+ NLA+ K+
Sbjct: 267 QPHFP-----DAYCNLANALKE 283
Score = 200 bits (512), Expect = 3e-58
Identities = 76/289 (26%), Positives = 133/289 (46%), Gaps = 44/289 (15%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
+ A+ Y A++ P+ +L N LK G+ PNF A+ NL
Sbjct: 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGC 177
Query: 48 ALKEKGQIN--VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHL-MQSVPGMHNKSR 104
+G+I + H ++ L P N +++ + +V +
Sbjct: 178 VFNAQGEIWLAIHH---FEKAVTLDP--------------NFLDAYINLGNV--LKEARI 218
Query: 105 VE--IFCY----ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLA 157
+ + Y +LSP+ + V + A + Y A+ L P D+ NLA
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278
Query: 158 NIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF 217
N +E+G + EA Y AL + P A + +NLA++ ++QG + +A+ Y++A+ + P F
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338
Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
A A+SN+ + L++ +Q AL Y AI+I+P FADA+SN+ + K+
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
Score = 186 bits (476), Expect = 3e-53
Identities = 128/256 (50%), Positives = 147/256 (57%), Gaps = 44/256 (17%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
+ A Y +AIE QPNF A+ NL +G+ PNF DAY NL N
Sbjct: 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211
Query: 48 ALKEKGQIN--VLHKPPYKYTRELAPGN---RIRIGYVSSDFGNHPTSHLMQSVPGMHNK 102
LKE + V Y L+P + + V + G +
Sbjct: 212 VLKEARIFDRAVAA---YLRALSLSPNHAVVHGNLACVYYEQGLIDLA------------ 256
Query: 103 SRVEIFCY----ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLA 157
I Y L P + + + L V+EAE+CYNTALRLCPTHADSLNNLA
Sbjct: 257 ----IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312
Query: 158 NIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF 217
NIKREQG IEEA RLY KALEVFPEFAAAHSNLASVLQQQGKL +AL+HYKEAIRI P+F
Sbjct: 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372
Query: 218 ADAYSNMGNTLKEMQD 233
ADAYSNMGNTLKEMQD
Sbjct: 373 ADAYSNMGNTLKEMQD 388
Score = 170 bits (432), Expect = 4e-47
Identities = 56/265 (21%), Positives = 98/265 (36%), Gaps = 68/265 (25%)
Query: 23 YCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYKYTR 67
LA+ + G P+ L++ + ++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRL------------ 49
Query: 68 ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSPDDGTTFSYI 123
+ + +P +S +
Sbjct: 50 DRS------------------------------------AHFSTLAIKQNPLLAEAYSNL 73
Query: 124 ISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE 182
+V Q+ EA E Y ALRL P D NLA G +E A + Y+ AL+ P+
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133
Query: 183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYS 242
S+L ++L+ G+L +A Y +AI QP+FA A+SN+G +I A+ +
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193
Query: 243 RAIQINPGFADAHSNLASIHKDSGK 267
+A+ ++P F DA+ NL ++ K++
Sbjct: 194 KAVTLDPNFLDAYINLGNVLKEARI 218
Score = 159 bits (404), Expect = 4e-43
Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 10/173 (5%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
AE R P + L L++I + ++ + A++ P A A+SNL
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
+V +++G+L +A+ HY+ A+R++P F D Y N+ L D++GA+Q Y A+Q NP
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133
Query: 251 FADAHSNLASIHKDSGK----RGFFIRT-DLNSAYFWLLLLDAHSNLASIHKD 298
S+L ++ K G+ + +++ + + A SNL +
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA-----VAWSNLGCVFNA 181
Score = 134 bits (339), Expect = 2e-34
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 10/151 (6%)
Query: 153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIR 212
LA+ + + G E A R ++ P+ L+S+ Q +L + AI+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 213 IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK----- 267
P A+AYSN+GN KE +Q A++ Y A+++ P F D + NLA+ +G
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 268 RGFFIRTDLNSAYFWLLLLDAHSNLASIHKD 298
+ + N + S+L ++ K
Sbjct: 122 QAYVSALQYNPDLY-----CVRSDLGNLLKA 147
Score = 92.2 bits (230), Expect = 4e-20
Identities = 61/183 (33%), Positives = 77/183 (42%), Gaps = 68/183 (37%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
IDLAIDTYRRAIELQP+FPDAYCNLANALKEKG P D+ NLA
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312
Query: 47 NALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE 106
N +E+G I E A
Sbjct: 313 NIKREQGNI------------EEA------------------------------------ 324
Query: 107 IFCY----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKR 161
+ Y + P+ S + SVL ++ EA Y A+R+ PT AD+ +N+ N +
Sbjct: 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384
Query: 162 EQG 164
E
Sbjct: 385 EMQ 387
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 186 bits (474), Expect = 3e-53
Identities = 43/289 (14%), Positives = 90/289 (31%), Gaps = 63/289 (21%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
+ A+ + A++ P +A+ L E Q P+ A LA
Sbjct: 80 LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALA 139
Query: 47 NALKEKGQIN---------VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVP 97
+ + + + P Y
Sbjct: 140 VSFTNESLQRQACEILRDWLRYTPAY---------------------------------A 166
Query: 98 GMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTH--ADSLNN 155
+ + L G + + S+L E +E + A+RL PT D
Sbjct: 167 HLVTPAEEGAGGAGL----GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222
Query: 156 LANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP 215
L + G ++A + AL V P + L + L + +A+ Y+ A+ +QP
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282
Query: 216 SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD 264
+ + N+G + + + A++ + A+ + ++ ++
Sbjct: 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331
Score = 174 bits (442), Expect = 1e-48
Identities = 46/306 (15%), Positives = 80/306 (26%), Gaps = 89/306 (29%)
Query: 3 DLAIDTYRRAIELQPNFP----DAYCNLANALKEKGQ---------------PNFPDAYC 43
DL TY + + + P ++G P +A+
Sbjct: 43 DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQ 102
Query: 44 NLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKS 103
L E Q LA
Sbjct: 103 YLGTTQAENEQE------------LLA--------------------------------- 117
Query: 104 RVEIFCY----ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLAN 158
I L PD+ T + +A E LR P +A +
Sbjct: 118 ---ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE 174
Query: 159 IKR---------------EQGYIEEATRLYLKALEVFPEF--AAAHSNLASVLQQQGKLT 201
E L+L A+ + P L + G+
Sbjct: 175 GAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD 234
Query: 202 DALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASI 261
A+ + A+ ++P+ ++ +G TL + A+ Y RA+++ PG+ + NL
Sbjct: 235 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS 294
Query: 262 HKDSGK 267
+ G
Sbjct: 295 CINLGA 300
Score = 136 bits (345), Expect = 2e-35
Identities = 37/276 (13%), Positives = 73/276 (26%), Gaps = 63/276 (22%)
Query: 9 YRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRE 68
+ RA + D + L Q + A A + L Y +
Sbjct: 3 FERAKSAIESDVDFWDKL--------QAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQ 54
Query: 69 LAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLL 128
N ++ P + G L
Sbjct: 55 FEEENP------------------LRDHPQPFEE--------------GLRR------LQ 76
Query: 129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS 188
+ A + A++ P H ++ L + E A + LE+ P+ A
Sbjct: 77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALM 136
Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS---------------NMGNTLKEMQD 233
LA + A ++ +R P++A + + +L
Sbjct: 137 ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 196
Query: 234 IQGALQCYSRAIQINPGF--ADAHSNLASIHKDSGK 267
+ + A++++P D L + SG+
Sbjct: 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE 232
Score = 114 bits (287), Expect = 1e-27
Identities = 25/185 (13%), Positives = 49/185 (26%), Gaps = 25/185 (13%)
Query: 139 YNTALRLCPTHADSLNNLAN------------IKREQGYIEEATRLYLKALEVFPE---- 182
+ A + D + L Y + + Y K + E
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62
Query: 183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYS 242
Q+G L +A+L ++ A++ P +A+ +G T E + A+
Sbjct: 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122
Query: 243 RAIQINPGFADAHSNLASIHKDSGK---------RGFFIRTDLNSAYFWLLLLDAHSNLA 293
R +++ P A LA + + L
Sbjct: 123 RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 182
Query: 294 SIHKD 298
+
Sbjct: 183 PSKRI 187
Score = 65.8 bits (161), Expect = 1e-11
Identities = 27/256 (10%), Positives = 53/256 (20%), Gaps = 88/256 (34%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYC---------NLANALKEKG------------------ 34
A + R + P + L + + G
Sbjct: 148 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA 207
Query: 35 ---QPNFPDA--YCNLANALKEKGQIN--VLHKPPYKYTRELAPGNRI---RIGYVSSDF 84
P D C L G+ + V + + P + + ++G
Sbjct: 208 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC---FTAALSVRPNDYLLWNKLGAT---- 260
Query: 85 GNHPTSHLMQSVPGMHNKSRVE--IFCY----ALSPDDGTTFSYIISVLLLI-QVSEAEE 137
+ N ++ E + Y L P + + + + EA E
Sbjct: 261 --------------LANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 306
Query: 138 CYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ 197
+ AL + + S L L
Sbjct: 307 HFLEALNMQRKSRGPRGEGGAMSEN-----------------------IWSTLRLALSML 343
Query: 198 GKLTDALLHYKEAIRI 213
G+ +
Sbjct: 344 GQSDAYGAADARDLST 359
Score = 59.7 bits (145), Expect = 1e-09
Identities = 23/203 (11%), Positives = 47/203 (23%), Gaps = 61/203 (30%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQIN--VLHK 60
+ + A+ L P D D C L G+ + V
Sbjct: 198 LEVKELFLAAVRLDPTSIDP-----------------DVQCGLGVLFNLSGEYDKAVDC- 239
Query: 61 PPYKYTRELAPGNRI---RIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE--IFCY----A 111
+ + P + + ++G + N ++ E + Y
Sbjct: 240 --FTAALSVRPNDYLLWNKLGAT------------------LANGNQSEEAVAAYRRALE 279
Query: 112 LSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIK---------- 160
L P + + + + EA E + AL + +
Sbjct: 280 LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 339
Query: 161 -REQGYIEEATRLYLKALEVFPE 182
G + + L
Sbjct: 340 LSMLGQSDAYGAADARDLSTLLT 362
Score = 44.6 bits (106), Expect = 6e-05
Identities = 9/79 (11%), Positives = 16/79 (20%), Gaps = 16/79 (20%)
Query: 205 LHYKEAIRIQPSFADAYSNMGNTLKEMQDIQG------------ALQCYSRAIQINP--- 249
+ ++ A S D + + L+EM Y + Q
Sbjct: 1 MEFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENP 60
Query: 250 -GFADAHSNLASIHKDSGK 267
G
Sbjct: 61 LRDHPQPFEEGLRRLQEGD 79
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 184 bits (468), Expect = 9e-53
Identities = 43/288 (14%), Positives = 79/288 (27%), Gaps = 61/288 (21%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
+ A + + P +A+ +L E + P + LA
Sbjct: 37 LAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 96
Query: 47 NALKEKGQIN---------VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVP 97
+ + N +L +P Y
Sbjct: 97 VSHTNEHNANAALASLRAWLLSQPQY---------------------------------E 123
Query: 98 GMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLA 157
+ + + + DD S + E + AL + P A +L
Sbjct: 124 QLGSVNLQA----DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179
Query: 158 NIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSF 217
+ + A +A+E+ P+ A + L + L + +AL Y A+ I P +
Sbjct: 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY 239
Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS 265
NM + M A + RAI + G + S
Sbjct: 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRS 287
Score = 154 bits (392), Expect = 3e-42
Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 15/149 (10%)
Query: 134 EAEECYNTALRLCPTHAD---------------SLNNLANIKREQGYIEEATRLYLKALE 178
A L P + ++ + E L ALE
Sbjct: 107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE 166
Query: 179 VFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGAL 238
+ P A H++L + A + + A+ ++P A ++ +G TL Q AL
Sbjct: 167 MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226
Query: 239 QCYSRAIQINPGFADAHSNLASIHKDSGK 267
Y+RA+ INPG+ N+A + + +
Sbjct: 227 DAYNRALDINPGYVRVMYNMAVSYSNMSQ 255
Score = 131 bits (331), Expect = 8e-34
Identities = 16/143 (11%), Positives = 37/143 (25%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
+ + Y + ++ + + EA + + PE A +L
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
+ K A++ A + P ++ + + + AL + P
Sbjct: 62 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121
Query: 251 FADAHSNLASIHKDSGKRGFFIR 273
+ S D
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSE 144
Score = 113 bits (285), Expect = 1e-27
Identities = 17/104 (16%), Positives = 38/104 (36%)
Query: 164 GYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN 223
G++ + Y + + + L +A L ++ + P +A+ +
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 224 MGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+G T E + A+ + A ++P H+ LA H +
Sbjct: 61 LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 104
Score = 48.4 bits (116), Expect = 3e-06
Identities = 5/65 (7%), Positives = 14/65 (21%), Gaps = 15/65 (23%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
Y + + ++ + P +A+ +L
Sbjct: 6 NNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQ 65
Query: 50 KEKGQ 54
E +
Sbjct: 66 AENEK 70
Score = 41.9 bits (99), Expect = 4e-04
Identities = 8/73 (10%), Positives = 19/73 (26%), Gaps = 4/73 (5%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA-S 192
A + A+ + + + + R+ L + P+
Sbjct: 258 LAAKQLVRAIYMQVGGTTPTGEASREATRS--MWDFFRMLLNVMNR-PDLVELTYAQNVE 314
Query: 193 VLQQQGKLTDALL 205
++ L LL
Sbjct: 315 PFAKEFGLQSMLL 327
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 180 bits (459), Expect = 2e-52
Identities = 42/273 (15%), Positives = 80/273 (29%), Gaps = 38/273 (13%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQP--NFPDAYCNLANALKEKGQINVLH 59
+ + + + L P +G ++ A A++E + + +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 60 KPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSPD 115
N + S + + Y L
Sbjct: 61 ------------INF---ANLLSSVNELERA----------------LAFYDKALELDSS 89
Query: 116 DGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYL 174
T + +V + EA++ + ALR + D L + + + A
Sbjct: 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ 149
Query: 175 KALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDI 234
+A+E+ A L +G L +AL + P ADA+ N G T ++
Sbjct: 150 RAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENR 209
Query: 235 QGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ AL+ +AI I P A +
Sbjct: 210 EKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
Score = 70.6 bits (174), Expect = 7e-14
Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 14/108 (12%)
Query: 200 LTDALLHYKEAIRIQPSFADAYSNMGNTL----KEMQDIQGALQCYSRAIQINPGFADAH 255
+ + H+ + + P + S G E D + A + +++AI+ N A +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 256 SNLASIHKDSGKR----GFFIRT-DLNSAYFWLLLLDAHSNLASIHKD 298
N A++ + F+ + +L+S+ A+ +++
Sbjct: 61 INFANLLSSVNELERALAFYDKALELDSSAA-----TAYYGAGNVYVV 103
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 179 bits (456), Expect = 4e-51
Identities = 45/292 (15%), Positives = 92/292 (31%), Gaps = 42/292 (14%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
+E P L E + P+ P ++ +
Sbjct: 41 CYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100
Query: 50 KEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFC 109
G N + L G +G+ S ++ H+++ +
Sbjct: 101 LMVGHKNEHARRYLSKATTLEKTY----GPAWIAYGH---SFAVE---SEHDQA---MAA 147
Query: 110 Y----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQG 164
Y L YI L AE ++ AL + P ++ + + + G
Sbjct: 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG 207
Query: 165 YIEEATRLYLKALEVFPE---------FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP 215
+ A + +L ALE + +NL V ++ K +AL ++++A+ + P
Sbjct: 208 EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267
Query: 216 SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
A YS +G M + + A+ + A+ + + + L +
Sbjct: 268 QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG 319
Score = 152 bits (387), Expect = 2e-41
Identities = 38/324 (11%), Positives = 82/324 (25%), Gaps = 86/324 (26%)
Query: 9 YRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKG 53
+++ D +LA P L E
Sbjct: 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELN 70
Query: 54 QINVLHKPPYKYTR--ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYA 111
+ N L Y + +L P ++P S +A
Sbjct: 71 KANELF---YLSHKLVDLYP--------------SNPVSW------------------FA 95
Query: 112 LSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATR 171
+ G + ++ + A + A L T+ + + + ++A
Sbjct: 96 V----GCYYL-----MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMA 146
Query: 172 LYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM 231
Y A ++ + A + +A+ I P +G +
Sbjct: 147 AYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN 206
Query: 232 QDIQGALQCYSRAIQINPG---------FADAHSNLASIHKDSGKRGFFIRTDLNSA--- 279
+ + A + + A++ + +NL + + K A
Sbjct: 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK--------YAEALDY 258
Query: 280 YFWLLLLD-----AHSNLASIHKD 298
+ L+L +S + IH
Sbjct: 259 HRQALVLIPQNASTYSAIGYIHSL 282
Score = 143 bits (362), Expect = 5e-38
Identities = 31/266 (11%), Positives = 75/266 (28%), Gaps = 69/266 (25%)
Query: 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNL 45
+ A +A L+ + A+ ++ + + +
Sbjct: 106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165
Query: 46 ANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRV 105
+LA Q+
Sbjct: 166 GLEYGLTNNS------------KLA------------------ERFFSQA---------- 185
Query: 106 EIFCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTH---------ADSLNN 155
+++P+D + V + AE+ + AL LNN
Sbjct: 186 ----LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241
Query: 156 LANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP 215
L ++ R+ EA + +AL + P+ A+ +S + + G +A+ ++ A+ ++
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301
Query: 216 SFADAYSNMGNTLKEMQDIQGALQCY 241
+ + +G+ ++ A
Sbjct: 302 DDTFSVTMLGHCIEMYIGDSEAYIGA 327
Score = 87.3 bits (217), Expect = 7e-19
Identities = 16/140 (11%), Positives = 34/140 (24%), Gaps = 11/140 (7%)
Query: 165 YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM 224
Y + + + ++++ E +LA + P A
Sbjct: 3 YNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH 62
Query: 225 GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK-----RGFFIR-TDLNS 278
TL E+ + + + P + + + G R + + T L
Sbjct: 63 IGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122
Query: 279 AYFWLLLLDAHSNLASIHKD 298
Y A
Sbjct: 123 TY-----GPAWIAYGHSFAV 137
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 176 bits (448), Expect = 1e-49
Identities = 44/293 (15%), Positives = 75/293 (25%), Gaps = 74/293 (25%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
+ + I AI P +A+ L E PN A LA
Sbjct: 81 LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA 140
Query: 47 NALKEKGQIN---------VLHKPPYK---YTRELAPGNRIRIGYVSSDFGNHPTSHLMQ 94
+ + P YK ++ +PG R+ D
Sbjct: 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVL------- 193
Query: 95 SVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTH--ADS 152
+E Y A D
Sbjct: 194 --------------------------------------EGVKELYLEAAHQNGDMIDPDL 215
Query: 153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIR 212
L + G A + AL V PE + + L + L + +A+ Y A+
Sbjct: 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275
Query: 213 IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS 265
IQP F + N+G + + + A+ + A+ + + +
Sbjct: 276 IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGN 328
Score = 155 bits (394), Expect = 4e-42
Identities = 38/309 (12%), Positives = 79/309 (25%), Gaps = 66/309 (21%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANA-----------------------LKEKGQPNFPDA 41
A E + +A +
Sbjct: 8 AKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPG 67
Query: 42 YCNLANALKEKGQIN--VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLM----QS 95
++G + +L + P + Q+
Sbjct: 68 AFEEGLKRLKEGDLPVTILF---MEAAILQDP--------------GDAEAWQFLGITQA 110
Query: 96 VPGMHNKSRVEIFCY----ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHA 150
+ I L P++ + +A E ++ P +
Sbjct: 111 ENENEQAA---IVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYK 167
Query: 151 DSLNNLANIKRE----------QGYIEEATRLYLKALEVFPEF--AAAHSNLASVLQQQG 198
+ N +E LYL+A + + L + G
Sbjct: 168 YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG 227
Query: 199 KLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL 258
+ A+ + A+ ++P ++ +G TL + A++ Y+RA++I PGF + NL
Sbjct: 228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNL 287
Query: 259 ASIHKDSGK 267
+ G
Sbjct: 288 GISCINLGA 296
Score = 137 bits (346), Expect = 1e-35
Identities = 24/181 (13%), Positives = 48/181 (26%), Gaps = 12/181 (6%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
VS +E+ Y + ++G + A+ P A A L
Sbjct: 46 TVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFL 105
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
+ A++ + + +QP+ A + + Q A + I+ NP
Sbjct: 106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165
Query: 251 FADAHSNLASIHKDSGKRGFFIRT-----DLNSAYFWLLLL-------DAHSNLASIHKD 298
+ N + + + Y D + L +
Sbjct: 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225
Query: 299 S 299
S
Sbjct: 226 S 226
Score = 134 bits (340), Expect = 1e-34
Identities = 38/266 (14%), Positives = 70/266 (26%), Gaps = 69/266 (25%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
A + + I+ P + N + + ++ + + + + K
Sbjct: 150 QDACEALKNWIKQNPKYKYLVKNKKGSPGLTRR---------MSKSPVDSSVLEGV-KEL 199
Query: 63 YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSY 122
Y L G F
Sbjct: 200 YLEAAHQNGDMIDPDLQ------------------------------TGL----GVLFH- 224
Query: 123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE 182
L + + A + +N AL + P N L EEA Y +ALE+ P
Sbjct: 225 -----LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279
Query: 183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA--------YSNMGNTLKEMQDI 234
F + NL G +A+ ++ A+ +Q + N+ L+ +
Sbjct: 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL 339
Query: 235 QGA-----------LQCYSRAIQINP 249
L RA ++P
Sbjct: 340 MDQPELFQAANLGDLDVLLRAFNLDP 365
Score = 127 bits (320), Expect = 4e-32
Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 8/142 (5%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIK--------REQGYIEEATRLYLKALEVFPEFAA 185
A+ + +A + Q + + + Y E +
Sbjct: 7 RAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWP 66
Query: 186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAI 245
++G L +L + AI P A+A+ +G T E ++ Q A+ R +
Sbjct: 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126
Query: 246 QINPGFADAHSNLASIHKDSGK 267
++ P A LA + ++
Sbjct: 127 ELQPNNLKALMALAVSYTNTSH 148
Score = 83.2 bits (206), Expect = 3e-17
Identities = 23/145 (15%), Positives = 39/145 (26%), Gaps = 18/145 (12%)
Query: 167 EEATRLYLKALEVFPEFAAAHSNLAS--------VLQQQGKLTDALLHYKEAIRIQPSFA 218
E A E + + A +A Q Q ++ + Y
Sbjct: 6 ERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDW 65
Query: 219 DAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIR----- 273
G + D+ + AI +PG A+A L ++ I
Sbjct: 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRC 125
Query: 274 TDLNSAYFWLLLLDAHSNLASIHKD 298
+L L A LA + +
Sbjct: 126 LELQPNN-----LKALMALAVSYTN 145
Score = 46.6 bits (111), Expect = 1e-05
Identities = 4/79 (5%), Positives = 12/79 (15%), Gaps = 8/79 (10%)
Query: 197 QGKLTDALLHYKEAIRIQPSFADAYSNMGNT--------LKEMQDIQGALQCYSRAIQIN 248
+ A + + M + + + + Y +
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 249 PGFADAHSNLASIHKDSGK 267
G
Sbjct: 62 FKDWPGAFEEGLKRLKEGD 80
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 179 bits (456), Expect = 2e-49
Identities = 35/285 (12%), Positives = 71/285 (24%), Gaps = 38/285 (13%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
+ +A L P A + + P A +
Sbjct: 193 LLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK 252
Query: 50 KEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE--I 107
+ + L P L P + S G V+ +
Sbjct: 253 QALETVQRL-LPVLCQAHGLTP--------------QQVVAIASNSG-GKQALETVQRLL 296
Query: 108 FCY----ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKRE 162
L+P + L V A L P ++ + K+
Sbjct: 297 PVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQA 356
Query: 163 QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS 222
++ + +A + PE A ++ Q + L +A + P A +
Sbjct: 357 LETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIA 416
Query: 223 NMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ + ++ +Q L +A + P A ++
Sbjct: 417 SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALES 461
Score = 160 bits (406), Expect = 1e-42
Identities = 29/281 (10%), Positives = 67/281 (23%), Gaps = 60/281 (21%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
+ +A L P A + + P A +
Sbjct: 157 QALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGG 216
Query: 48 ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
+ R L ++
Sbjct: 217 GKQALE----------TVQRLLP------------VL----------------CQA---- 234
Query: 108 FCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYI 166
+ L+P + L V A L P ++ + + K+ +
Sbjct: 235 --HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETV 292
Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
+ + +A + P+ A ++ Q + L +A + P A ++
Sbjct: 293 QRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDG 352
Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ ++ +Q L +A + P A ++ +
Sbjct: 353 GKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALET 393
Score = 159 bits (405), Expect = 2e-42
Identities = 29/279 (10%), Positives = 66/279 (23%), Gaps = 60/279 (21%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
+ +A L P A + + P A +
Sbjct: 125 LLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK 184
Query: 50 KEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFC 109
+ + L +
Sbjct: 185 QALETVQRLLP---VLCQAHG--------------------------------------- 202
Query: 110 YALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEE 168
L+P + L V A L P ++ + K+ ++
Sbjct: 203 --LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQR 260
Query: 169 ATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL 228
+ +A + P+ A ++ + Q + L +A + P A ++ G
Sbjct: 261 LLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK 320
Query: 229 KEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ ++ +Q L +A + P A ++ +
Sbjct: 321 QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALET 359
Score = 156 bits (397), Expect = 2e-41
Identities = 28/279 (10%), Positives = 65/279 (23%), Gaps = 60/279 (21%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
+ +A L P A + + P A +
Sbjct: 91 LLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGK 150
Query: 50 KEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFC 109
+ + L +
Sbjct: 151 QALETVQALLP---VLCQAHG--------------------------------------- 168
Query: 110 YALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEE 168
L+P+ + L V A L P ++ + K+ ++
Sbjct: 169 --LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQR 226
Query: 169 ATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL 228
+ +A + P+ A ++ Q + L +A + P A ++
Sbjct: 227 LLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGK 286
Query: 229 KEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ ++ +Q L +A + P A ++ +
Sbjct: 287 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALET 325
Score = 154 bits (391), Expect = 1e-40
Identities = 27/275 (9%), Positives = 65/275 (23%), Gaps = 60/275 (21%)
Query: 9 YRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKG 53
+ L P A + + P A + +
Sbjct: 61 TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 120
Query: 54 QINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALS 113
+ L + L+
Sbjct: 121 TVQRLLP---VLCQAHG-----------------------------------------LT 136
Query: 114 PDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRL 172
P+ + + V A L P ++ + K+ ++ +
Sbjct: 137 PEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 196
Query: 173 YLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ 232
+A + P+ A ++ Q + L +A + P A ++ G + ++
Sbjct: 197 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 256
Query: 233 DIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+Q L +A + P A ++ + +
Sbjct: 257 TVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALET 291
Score = 152 bits (387), Expect = 5e-40
Identities = 31/271 (11%), Positives = 63/271 (23%), Gaps = 61/271 (22%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
+ +A L P A + + + P A +
Sbjct: 261 LLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK 320
Query: 50 KEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFC 109
+ R L ++
Sbjct: 321 QALE----------TVQRLLP------------VL----------------CQA------ 336
Query: 110 YALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEE 168
+ L+P + L V A L P ++ + K+ ++
Sbjct: 337 HGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQR 396
Query: 169 ATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL 228
+ +A + PE A ++ Q + L +A + P A ++ G
Sbjct: 397 LLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGR 456
Query: 229 KEMQDIQGALQCYSRAIQINP-GFADAHSNL 258
++ I L A+ A + L
Sbjct: 457 PALESIVAQLSRPDPALAALTNDHLVALACL 487
Score = 141 bits (356), Expect = 5e-36
Identities = 29/283 (10%), Positives = 66/283 (23%), Gaps = 60/283 (21%)
Query: 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKG---------------QPNFPDAYCNL 45
L+ +A + ++L + P A +
Sbjct: 19 LLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASH 78
Query: 46 ANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRV 105
+ + L +
Sbjct: 79 DGGKQALETVQRLLP---VLCQAHG----------------------------------- 100
Query: 106 EIFCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG 164
L+P + L V A L P ++ + K+
Sbjct: 101 ------LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE 154
Query: 165 YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM 224
++ + +A + PE A ++ Q + L +A + P A ++
Sbjct: 155 TVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 214
Query: 225 GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
G + ++ +Q L +A + P A ++ +
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALET 257
Score = 116 bits (293), Expect = 9e-28
Identities = 21/242 (8%), Positives = 51/242 (21%), Gaps = 61/242 (25%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
+ + +A L P A + + P A +
Sbjct: 292 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHD 351
Query: 47 NALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE 106
+ + L +
Sbjct: 352 GGKQALETVQRLLP---VLCQAHG------------------------------------ 372
Query: 107 IFCYALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGY 165
L+P+ + + V A L P ++ + K+
Sbjct: 373 -----LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALET 427
Query: 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS-FADAYSNM 224
++ + +A + P+ A ++ + L A+ + A + +
Sbjct: 428 VQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACL 487
Query: 225 GN 226
G
Sbjct: 488 GG 489
Score = 49.7 bits (119), Expect = 2e-06
Identities = 10/88 (11%), Positives = 23/88 (26%), Gaps = 4/88 (4%)
Query: 182 EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKE--MQDIQGALQ 239
E H + + LT A +++ + G + + AL
Sbjct: 2 EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNAL- 60
Query: 240 CYSRAIQINPGFADAHSNLASIHKDSGK 267
+ + P A ++ +
Sbjct: 61 -TGAPLNLTPEQVVAIASHDGGKQALET 87
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 168 bits (429), Expect = 1e-48
Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 12/148 (8%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANI-----------KREQGYIEEATRLYLKALEV 179
V+ A E T + P + L+ +R +GY+E+A + A V
Sbjct: 54 LVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV 113
Query: 180 FPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ 239
P +A H V G+ A K+A+ ++ + S + M + AL
Sbjct: 114 NPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALA 172
Query: 240 CYSRAIQINPGFADAHSNLASIHKDSGK 267
Y++A++ P D AS GK
Sbjct: 173 QYAKALEQAPKDLDLRVRYASALLLKGK 200
Score = 156 bits (396), Expect = 5e-44
Identities = 30/184 (16%), Positives = 60/184 (32%), Gaps = 22/184 (11%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
+ A + AL+ P ++L LA + + G + A + P + + L
Sbjct: 20 RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79
Query: 191 ASVL-----------QQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ 239
+ + +G L AL K+A R+ P +A + G + + A
Sbjct: 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEA 139
Query: 240 CYSRAIQINPGFADAHSNLASIHKDSGK----RGFFIRT-DLNSAYFWLLLLDAHSNLAS 294
+A+ + + S LA ++ G+ + + + D AS
Sbjct: 140 SLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL-----DLRVRYAS 193
Query: 295 IHKD 298
Sbjct: 194 ALLL 197
Score = 139 bits (352), Expect = 8e-38
Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 11/132 (8%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
T + L G + A L+ +AL+ P+ A LA + G + AL +
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQG-----------ALQCYSRAIQINPGFADAH 255
K + P + Y + + AL A ++NP +A H
Sbjct: 62 GKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121
Query: 256 SNLASIHKDSGK 267
++ G+
Sbjct: 122 LQRGLVYALLGE 133
Score = 132 bits (334), Expect = 2e-35
Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 1/116 (0%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
+A A R+ P +A + G ++A +AL + S LA +
Sbjct: 102 QALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAEL 160
Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
G+L +AL Y +A+ P D + L + A + + +
Sbjct: 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216
Score = 111 bits (281), Expect = 3e-28
Identities = 15/129 (11%), Positives = 37/129 (28%), Gaps = 11/129 (8%)
Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
L L G+ AL ++ A++ P +A + T ++ + AL+
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 241 YSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLN------SAYFWLLLLD-----AH 289
+ P + + L+ + ++ S ++ H
Sbjct: 62 GKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121
Query: 290 SNLASIHKD 298
++
Sbjct: 122 LQRGLVYAL 130
Score = 96.8 bits (242), Expect = 5e-23
Identities = 37/209 (17%), Positives = 57/209 (27%), Gaps = 48/209 (22%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
D A+ + RA++ P P+A LA + G P + Y L+
Sbjct: 21 YDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80
Query: 47 NALKEKGQINVLHKPP----------YKYTRELAPGNRIRIGYVSSDFGNHPTSHL-MQS 95
A + + K + P + HL
Sbjct: 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP--------------RYAPLHLQRGL 126
Query: 96 VPGMHNKSRVE--IFCY--ALSPDDGTTFSYIISVLLLIQ--VSEAEECYNTALRLCPTH 149
V + AL+ +D ++ L L + EA Y AL P
Sbjct: 127 V--YALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD 184
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALE 178
D A+ +G EEA R
Sbjct: 185 LDLRVRYASALLLKGKAEEAARAAALEHH 213
Score = 29.4 bits (67), Expect = 2.9
Identities = 3/20 (15%), Positives = 4/20 (20%)
Query: 36 PNFPDAYCNLANALKEKGQI 55
L L G+
Sbjct: 2 QTAEQNPLRLGVQLYALGRY 21
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 165 bits (421), Expect = 7e-48
Identities = 22/137 (16%), Positives = 45/137 (32%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
+ S+A D +L + G ++ T L ++L P+ + L
Sbjct: 23 RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVL 82
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
Q K A+ + P + +G L + A+ + A+ + P
Sbjct: 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Query: 251 FADAHSNLASIHKDSGK 267
H +A ++ G+
Sbjct: 143 EGKVHRAIAFSYEQMGR 159
Score = 159 bits (404), Expect = 2e-45
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 3/133 (2%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
V E +L P + L + + A L +K E P L
Sbjct: 57 AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRL 116
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
L G+ +A+ +K A+ ++P+ + + + ++M + AL + +A +++
Sbjct: 117 GVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE- 175
Query: 251 FADAHSNLASIHK 263
A LA + +
Sbjct: 176 --GASVELALVPR 186
Score = 145 bits (369), Expect = 1e-40
Identities = 14/121 (11%), Positives = 35/121 (28%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
+ + G +A L + + +L + G +
Sbjct: 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64
Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
+ ++ P + +G T ++Q A+ + + NP + L + G
Sbjct: 65 LERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG 124
Query: 267 K 267
+
Sbjct: 125 R 125
Score = 78.6 bits (195), Expect = 5e-17
Identities = 27/185 (14%), Positives = 47/185 (25%), Gaps = 47/185 (25%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
A+ + + D +L A + G P+ L
Sbjct: 24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83
Query: 47 NALKEKGQIN--VLHKPPYKYTRELAPGN---RIRIGYVSSDFGNHPTSHLMQSVPGMHN 101
+ + + V E P N R R+G + G +
Sbjct: 84 LTYVQVQKYDLAVPL---LIKVAEANPINFNVRFRLGVALDNLGRFDEA----------- 129
Query: 102 KSRVEIFCY----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNL 156
I + L P++G I + + EA + A L + L
Sbjct: 130 -----IDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS---VEL 181
Query: 157 ANIKR 161
A + R
Sbjct: 182 ALVPR 186
Score = 50.1 bits (121), Expect = 3e-07
Identities = 6/59 (10%), Positives = 15/59 (25%), Gaps = 15/59 (25%)
Query: 13 IELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQIN 56
+ Y + + + G+ D +L A + G ++
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVD 59
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 175 bits (444), Expect = 4e-47
Identities = 30/290 (10%), Positives = 79/290 (27%), Gaps = 75/290 (25%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
+ ++ P + + + P F A+ A+
Sbjct: 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAH 415
Query: 48 ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
+ +G+ H+++ I
Sbjct: 416 SFAIEGE---------------------------------------------HDQA---I 427
Query: 108 FCY----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKRE 162
Y L + ++ + + + A E ++ L LN L +
Sbjct: 428 SAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN 487
Query: 163 QGYIEEATRLYLKALEVF-------PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP 215
+ ++ A + AL + +AA +NL ++ A+ + + +
Sbjct: 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547
Query: 216 SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS 265
+ A+ ++ + + A+ ++ I+P A L +++
Sbjct: 548 NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEEN 597
Score = 172 bits (437), Expect = 3e-46
Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 65/302 (21%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
+ Y +I D A+ L + + P D Y +L
Sbjct: 290 RAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASL 349
Query: 50 KEKGQINVLHKPPYKYTR--ELAPGNRIRIGYVSSDFGNHPTSH----LMQSVPGMHNKS 103
E G+ N L+ + P + + +++
Sbjct: 350 HESGEKNKLY---LISNDLVDRHP--------------EKAVTWLAVGIYYLCVNKISEA 392
Query: 104 RVEIFCY----ALSPDD-------GTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADS 152
+ + P +F+ + +A Y TA RL
Sbjct: 393 ---RRYFSKSSTMDPQFGPAWIGFAHSFAI------EGEHDQAISAYTTAARLFQGTHLP 443
Query: 153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIR 212
L + G I A + +F + L V + + A+ H++ A+
Sbjct: 444 YLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503
Query: 213 I-------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS 265
+ + +A ++N+G+ ++++ A+ ++ + ++ A+ H+ +A ++
Sbjct: 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHK 563
Query: 266 GK 267
Sbjct: 564 KI 565
Score = 157 bits (399), Expect = 4e-41
Identities = 37/270 (13%), Positives = 82/270 (30%), Gaps = 35/270 (12%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
D A + Y+ A+ + +A+ L + +L A +E + L
Sbjct: 217 DRAKECYKEALMVDAKCYEAFDQLVSN--------------HLLTADEEWDLV--LKLNY 260
Query: 63 YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY--ALSPDDGTTF 120
Y++E A R + H Y +++ + ++
Sbjct: 261 STYSKEDAAFLRSLYMLKLNKTS--------------HEDELRRAEDYLSSINGLEKSSD 306
Query: 121 SYIISVLLLIQ---VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKAL 177
+ L + L + P + D E G + + +
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366
Query: 178 EVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGA 237
+ PE A + K+++A ++ ++ + P F A+ ++ + A
Sbjct: 367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA 426
Query: 238 LQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ Y+ A ++ G + L H G
Sbjct: 427 ISAYTTAARLFQGTHLPYLFLGMQHMQLGN 456
Score = 141 bits (357), Expect = 1e-35
Identities = 33/257 (12%), Positives = 72/257 (28%), Gaps = 12/257 (4%)
Query: 14 ELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGN 73
E P D +++ G + K YK +
Sbjct: 175 ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD-RAKECYKEALMVDAKC 233
Query: 74 RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYI---ISVLLLI 130
+ + S+ + + + + D S ++
Sbjct: 234 --------YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
E Y +++ +D L A+ + + + K LE+ P +
Sbjct: 286 DELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH 345
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
+ L + G+ L + + P A + +G + I A + +S++ ++P
Sbjct: 346 LASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405
Query: 251 FADAHSNLASIHKDSGK 267
F A A G+
Sbjct: 406 FGPAWIGFAHSFAIEGE 422
Score = 139 bits (351), Expect = 8e-35
Identities = 42/252 (16%), Positives = 72/252 (28%), Gaps = 67/252 (26%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
I A + ++ + P F A+ A++ +G+ Y L
Sbjct: 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448
Query: 47 NALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE 106
+ G I LA +L S
Sbjct: 449 MQHMQLGNI------------LLA------------------NEYLQSS----------- 467
Query: 107 IFCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLC-------PTHADSLNNLAN 158
YAL D + + V + A + AL L A + NL +
Sbjct: 468 ---YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524
Query: 159 IKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA 218
R+ + A + L + A H+ +A V + A+ H E++ I P+
Sbjct: 525 AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584
Query: 219 DAYSNMGNTLKE 230
A + L+E
Sbjct: 585 MASDLLKRALEE 596
Score = 33.3 bits (76), Expect = 0.26
Identities = 18/159 (11%), Positives = 45/159 (28%), Gaps = 8/159 (5%)
Query: 99 MHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLAN 158
+ +++ + + + ++ + + A N+ +L + LAN
Sbjct: 2 VVKRTQTDSRMQSTPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLAN 61
Query: 159 IKREQGYIEEATRLYLKALEVFPEF--AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPS 216
G + ++ H L Q + A ++ + I +
Sbjct: 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDAL-----MQQQYKCAAFVGEKVLDITGN 116
Query: 217 FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH 255
DA+ + D A ++ N A +
Sbjct: 117 PNDAF-WLAQVYCCTGDYARAKCLLTKEDLYNRSSACRY 154
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 173 bits (441), Expect = 4e-47
Identities = 44/302 (14%), Positives = 82/302 (27%), Gaps = 87/302 (28%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
+ L+ N A C K P P++Y LA
Sbjct: 226 HSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLAL 284
Query: 48 ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
L +K +
Sbjct: 285 TLADKENS------------QEF------------------------------------F 296
Query: 108 FCY----ALSPDDGTTFSYIISVLLLIQ--VSEAEECYNTALRLCPTHADSLNNLANIKR 161
+ L+P+ T+ Y + I A+E + A L P + LA +
Sbjct: 297 KFFQKAVDLNPEYPPTY-YHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355
Query: 162 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAY 221
+QG E+ + + FP + A +L +G A+ Y A R++ +
Sbjct: 356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415
Query: 222 SNMGNTL----------------KEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS 265
+G + + + A++ ++A +++P A LA +
Sbjct: 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM 475
Query: 266 GK 267
K
Sbjct: 476 EK 477
Score = 170 bits (433), Expect = 5e-46
Identities = 42/280 (15%), Positives = 85/280 (30%), Gaps = 33/280 (11%)
Query: 2 IDLAIDTYRRAIELQP-----NFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQIN 56
+ + +E+ N+ AY L++AL+ + D +AN L K
Sbjct: 167 LASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRL--YSATDEGYLVANDLLTKSTDM 224
Query: 57 VLH-KPPYKYTRELAPGNRI---RIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY-- 110
L + G N +
Sbjct: 225 YHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA----------------QVLLQE 268
Query: 111 --ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIE 167
L P ++ ++ L E + + A+ L P + + + + +
Sbjct: 269 SINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYK 327
Query: 168 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227
A + KA + PE + LA +L +QGK T++ + E P+ + +
Sbjct: 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEI 387
Query: 228 LKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
L + D A++ Y A ++ H + + +
Sbjct: 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427
Score = 165 bits (420), Expect = 3e-44
Identities = 45/295 (15%), Positives = 90/295 (30%), Gaps = 39/295 (13%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
+ AI Y+ AIEL PN P Y N++ G P+ A A
Sbjct: 41 FNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRA 100
Query: 47 NALKEKGQIN--------VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPG 98
+A + G + + R + + +
Sbjct: 101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQV 160
Query: 99 MHNKSRV----EIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLN 154
+ + + + IF L T S A + AL+ + D
Sbjct: 161 LPSNTSLASFFGIFDSHLEVSSVNTSSNY---------DTAYALLSDALQRLYSATDEGY 211
Query: 155 NLAN--IKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIR 212
+AN + + + A A + L DA + +E+I
Sbjct: 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271
Query: 213 IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ P+ ++Y + TL + ++ Q + + +A+ +NP + + + ++
Sbjct: 272 LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD 325
Score = 162 bits (412), Expect = 3e-43
Identities = 36/294 (12%), Positives = 81/294 (27%), Gaps = 85/294 (28%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
+ A + +I L P P++Y LA L +K P +P Y +
Sbjct: 259 LLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317
Query: 47 NALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE 106
+ +
Sbjct: 318 QMYFIL---------------------------------------------QDYKNA--- 329
Query: 107 IFCY----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKR 161
+ +L+P++ + + +L + +E+E +N PT + A I
Sbjct: 330 KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389
Query: 162 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ----------------QGKLTDALL 205
++G + A + Y A + H + ++ + + K A+
Sbjct: 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449
Query: 206 HYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
+A + P A + +M+ I A++ + + + +
Sbjct: 450 LLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503
Score = 156 bits (396), Expect = 5e-41
Identities = 37/289 (12%), Positives = 90/289 (31%), Gaps = 29/289 (10%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCN--LANALKEKGQPNFPDA----YCNLANALKEKG--- 53
A+ + L +F A L L ++ + + L
Sbjct: 110 TDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA 168
Query: 54 ----------QINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKS 103
+++ ++ T + ++ Y ++D G + L+ M++
Sbjct: 169 SFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228
Query: 104 RVEIFCY----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLAN 158
+ L + Y L + +A+ ++ L P +S LA
Sbjct: 229 ---LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLAL 284
Query: 159 IKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFA 218
++ +E + + KA+++ PE+ + + + +A +++A + P
Sbjct: 285 TLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV 344
Query: 219 DAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
Y + L + + ++ P + + A I D G
Sbjct: 345 YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD 393
Score = 151 bits (383), Expect = 2e-39
Identities = 41/297 (13%), Positives = 84/297 (28%), Gaps = 85/297 (28%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
+++A++L P +P Y + P Y LA
Sbjct: 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLAC 352
Query: 48 ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
L ++G K+T A N++
Sbjct: 353 LLYKQG----------KFTESEA----------------------------FFNET-KLK 373
Query: 108 FCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANI------- 159
F P ++ +L A + Y+ A RL + +
Sbjct: 374 F-----PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL 428
Query: 160 ---------KREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEA 210
+ ++ A +L KA E+ P A LA + Q K+ +A+ ++++
Sbjct: 429 ARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488
Query: 211 IRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ + + T E IQ + ++ +P + + ++ G
Sbjct: 489 AILARTMDEKLQAT--TFAEAAKIQ-------KRLRADPIISAKMELTLARYRAKGM 536
Score = 123 bits (310), Expect = 8e-30
Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 5/128 (3%)
Query: 134 EAEECYNTALRLCP----THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSN 189
E L P +A L N N EA + Y A+E+ P +SN
Sbjct: 5 NGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSN 64
Query: 190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
+++ G L + +A+ I+P + A + + + + A+ S + +N
Sbjct: 65 ISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNG 123
Query: 250 GFADAHSN 257
F A
Sbjct: 124 DFDGASIE 131
Score = 117 bits (294), Expect = 8e-28
Identities = 33/247 (13%), Positives = 64/247 (25%), Gaps = 55/247 (22%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
A + +++A L P Y LA L ++G+ P P+ A
Sbjct: 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA 385
Query: 47 NALKEKGQIN--VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSR 104
L ++G + + Y + L H
Sbjct: 386 EILTDRGDFDTAIKQ---YDIAKRLEE--------------VQEKIH--------VGIG- 419
Query: 105 VEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG 164
+ S + L + + A + A L P + LA +K +
Sbjct: 420 ---PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME 476
Query: 165 YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM 224
I+EA L+ + + + K ++ +R P +
Sbjct: 477 KIDEAIELFEDSAILARTMDEKLQATT--FAEAAK-------IQKRLRADPIISAKMELT 527
Query: 225 GNTLKEM 231
+
Sbjct: 528 LARYRAK 534
Score = 108 bits (271), Expect = 6e-25
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 164 GYIEEATRLYLKALEVFPE----FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD 219
G + + P +A N + +A+ +Y+ AI + P+
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
YSN+ D++ ++ ++A++I P + A AS ++ G
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN 108
Score = 92.5 bits (230), Expect = 8e-20
Identities = 24/219 (10%), Positives = 48/219 (21%), Gaps = 61/219 (27%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
+ + P P+ A L ++G + +
Sbjct: 360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419
Query: 47 NALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE 106
+ + + D +
Sbjct: 420 PLIGKATILARQSSQDPTQ----------------LDEEKFNAA---------------- 447
Query: 107 IFCY----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKR 161
I L P + + L + ++ EA E + + L T + L
Sbjct: 448 IKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT---- 503
Query: 162 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL 200
EA + K L P +A + + +G L
Sbjct: 504 ----FAEAAK-IQKRLRADPIISAKMELTLARYRAKGML 537
Score = 82.8 bits (205), Expect = 9e-17
Identities = 36/319 (11%), Positives = 65/319 (20%), Gaps = 118/319 (36%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
+ L P+ AY N N
Sbjct: 4 MNGEPDIAQLKGLSPSQRQAY---------------AVQLKNRGNHFFTAKNF------- 41
Query: 63 YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSPDDGT 118
A I Y L P++
Sbjct: 42 -----NEA------------------------------------IKYYQYAIELDPNEPV 60
Query: 119 TFSYIISVLLLIQ--VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA------- 169
+ IS + + + E AL + P H+ +L A+ G +A
Sbjct: 61 FY-SNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119
Query: 170 ----------------TRLYLKALEVFPEFAAA-HSNLASVLQQQGKLTDALLHYKEAIR 212
L +A++V E + + VL L + +
Sbjct: 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179
Query: 213 IQPS-----FADAYSNMGNTLKEM-------------------QDIQGALQCYSRAIQIN 248
+ + AY+ + + L+ + L + +
Sbjct: 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLR 239
Query: 249 PGFADAHSNLASIHKDSGK 267
A A H
Sbjct: 240 ENAALALCYTGIFHFLKNN 258
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 161 bits (409), Expect = 2e-45
Identities = 39/271 (14%), Positives = 66/271 (24%), Gaps = 70/271 (25%)
Query: 17 PNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKP 61
+ D N + Q + N A A EKG
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKG-------- 52
Query: 62 PYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSPDDG 117
+Y E A I +
Sbjct: 53 --EY--ETA------------------------------------ISTLNDAVEQGREMR 72
Query: 118 TTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKA 176
+ I I + + + A+I + E+ +
Sbjct: 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL-TEHRTADILTKLRNAEKELKKAEAE 131
Query: 177 LEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQG 236
V PE A + +A+ Y E I+ P A YSN L ++
Sbjct: 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPE 191
Query: 237 ALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
A+ ++AI+ +P F A+ A+ +
Sbjct: 192 AIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222
Score = 108 bits (272), Expect = 1e-26
Identities = 34/240 (14%), Positives = 60/240 (25%), Gaps = 43/240 (17%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
+ AI T A+E Y ++ ++ + NA + G
Sbjct: 55 ETAISTLNDAVEQGREMRADYKVISK------------SFARIGNAYHKLG--------- 93
Query: 63 YKYTR--ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSPDD 116
+ E T H + + E+ ++P+
Sbjct: 94 -DLKKTIEYYQ--------------KSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEK 138
Query: 117 GTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLK 175
A + Y ++ P A +N A + EA K
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198
Query: 176 ALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQ 235
A+E P F A+ A+ + AL A + S + Q
Sbjct: 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258
Score = 61.0 bits (149), Expect = 2e-10
Identities = 8/68 (11%), Positives = 13/68 (19%), Gaps = 15/68 (22%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
+ + + P + K P Y N A
Sbjct: 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA 180
Query: 47 NALKEKGQ 54
AL +
Sbjct: 181 AALAKLMS 188
Score = 59.1 bits (144), Expect = 7e-10
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 16/67 (23%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
D AI+ Y +A EL + N A A EKG+ Y ++
Sbjct: 22 DEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80
Query: 48 ALKEKGQ 54
+ G
Sbjct: 81 SFARIGN 87
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 160 bits (407), Expect = 4e-45
Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 2/140 (1%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV--FPEFAAAHS 188
+ A+E Y AL +A LNN EQ EEA + L+A + +PE +
Sbjct: 86 EPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFE 145
Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248
NL V Q K A ++++++R+ + M + L + ++ A Q Y Q
Sbjct: 146 NLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG 205
Query: 249 PGFADAHSNLASIHKDSGKR 268
A + + K R
Sbjct: 206 GQNARSLLLGIRLAKVFEDR 225
Score = 142 bits (360), Expect = 1e-38
Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 12/181 (6%)
Query: 125 SVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA 184
S L+ ++ + D+ L ++G E+A KALE+ P A
Sbjct: 12 SGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA 71
Query: 185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRA 244
AH+ LA V Q + + A Y++A+ A +N G L E + + A Q A
Sbjct: 72 DAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEA 131
Query: 245 IQ--INPGFADAHSNLASIHKDSGK----RGFFIRT-DLNSAYFWLLLLDAHSNLASIHK 297
Q + P + NL + K + +F ++ LN +A +
Sbjct: 132 SQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP-----SVALEMADLLY 186
Query: 298 D 298
Sbjct: 187 K 187
Score = 137 bits (346), Expect = 1e-36
Identities = 36/262 (13%), Positives = 69/262 (26%), Gaps = 40/262 (15%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYK 64
+ + + DAY L ++G A L AL+ P
Sbjct: 22 GDQNPLKTDKGRDEARDAYIQLGLGYLQRGN--TEQAKVPLRKALE--------IDPSS- 70
Query: 65 YTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSPDDGTTF 120
A V + Y A +
Sbjct: 71 ---ADAHAAL---AVVFQTEMEPKLA----------------DEEYRKALASDSRNARVL 108
Query: 121 SYIISVLL-LIQVSEAEECYNTALR--LCPTHADSLNNLANIKREQGYIEEATRLYLKAL 177
+ L + EA + A + L P + NL + + +A + K+L
Sbjct: 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168
Query: 178 EVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGA 237
+ + +A +L ++ + A +Y + A + K +D A
Sbjct: 169 RLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTA 228
Query: 238 LQCYSRAIQINPGFADAHSNLA 259
+ ++ PG + A
Sbjct: 229 ASYGLQLKRLYPGSLEYQEFQA 250
Score = 125 bits (317), Expect = 9e-33
Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 15/161 (9%)
Query: 145 LCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL 204
+ +H ++ + R ++ LK + E A+ L Q+G A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGDQN---PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAK 57
Query: 205 LHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKD 264
+ ++A+ I PS ADA++ + + + + A + Y +A+ + A +N +
Sbjct: 58 VPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117
Query: 265 SGK----RGFF---IRTDLNSAYFWLLLLDAHSNLASIHKD 298
+ + L NL +
Sbjct: 118 QKRYEEAYQRLLEASQDTLYPERS-----RVFENLGLVSLQ 153
Score = 108 bits (271), Expect = 2e-26
Identities = 29/218 (13%), Positives = 58/218 (26%), Gaps = 60/218 (27%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
LA + YR+A+ N L E+ + +AY L A +
Sbjct: 88 KLADEEYRKALASDSRNARVLNNYGGFLYEQK--RYEEAYQRLLEAS----------QDT 135
Query: 63 YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSY 122
R N +G VS
Sbjct: 136 LYPERSRVFEN---LGLVSLQMK------------------------------------- 155
Query: 123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE 182
+ ++A+E + +LRL +A++ ++ A + Y + +
Sbjct: 156 --------KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA 220
A + + + A + + R+ P +
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245
Score = 106 bits (268), Expect = 4e-26
Identities = 29/217 (13%), Positives = 60/217 (27%), Gaps = 46/217 (21%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
+ A R+A+E+ P+ DA+ LA + + + N
Sbjct: 53 TEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYG 112
Query: 47 NALKEKGQ----INVLHK---PPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGM 99
L E+ + L + R N +G VS +
Sbjct: 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFEN---LGLVSLQMKKPAQA--------- 160
Query: 100 HNKSRVEIFCY----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLN 154
+ L+ + + + +L + A + Y+ + +A SL
Sbjct: 161 -------KEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLL 213
Query: 155 NLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191
+ + + A L+ ++P A
Sbjct: 214 LGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA 250
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 163 bits (415), Expect = 4e-45
Identities = 34/298 (11%), Positives = 82/298 (27%), Gaps = 63/298 (21%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
A+ + A++ P+ AY A G+ +F A +
Sbjct: 20 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79
Query: 48 ALKEKGQIN--VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRV 105
L ++G+++ +K + P + +S ++ +
Sbjct: 80 LLLKQGKLDEAEDD---FKKVLKSNP--------------SEQEEKEAESQLVKADEMQR 122
Query: 106 EIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGY 165
+ D + A + L +C A+ A ++G
Sbjct: 123 LRSQALDAFDGA-------------DYTAAITFLDKILEVCVWDAELRELRAECFIKEGE 169
Query: 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM- 224
+A A ++ + A ++++ Q G +L +E +++ +++
Sbjct: 170 PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 229
Query: 225 -----------GNTLKEMQDIQGALQCYSRAIQINPGFAD----AHSNLASIHKDSGK 267
L A Y ++ P A+ + + K
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK 287
Score = 151 bits (384), Expect = 1e-40
Identities = 38/294 (12%), Positives = 81/294 (27%), Gaps = 53/294 (18%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQIN-VLHK 60
+D A D +++ ++ P+ + + +K + + A + +
Sbjct: 87 LDEAEDDFKKVLKSNPSEQEEKEAESQLVK----ADEMQRLRSQALDAFDGADYTAAI-- 140
Query: 61 PPYKYTR--ELAPGN---RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----A 111
+ E+ + R G + I
Sbjct: 141 --TFLDKILEVCVWDAELRELRAECFIKEGEPRKA----------------ISDLKAASK 182
Query: 112 LSPDDGTTFSYIISVLLLIQ--VSEAEECYNTALRLCPTHADSLNNLANIKR-------- 161
L D+ F Y IS L + L+L H + +K+
Sbjct: 183 LKSDNTEAF-YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 241
Query: 162 ----EQGYIEEATRLYLKALEVFPEFAA----AHSNLASVLQQQGKLTDALLHYKEAIRI 213
G +AT Y ++ P A + + + K +A+ E +++
Sbjct: 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301
Query: 214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+P +A + + A+Q Y A + N L + +
Sbjct: 302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355
Score = 132 bits (334), Expect = 5e-34
Identities = 26/152 (17%), Positives = 56/152 (36%), Gaps = 15/152 (9%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
Q+++A ++ A+ P + + A + G + A K + + +F AA
Sbjct: 18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQR 77
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK---------------EMQDIQ 235
+L +QGKL +A +K+ ++ PS + +K + D
Sbjct: 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137
Query: 236 GALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
A+ + +++ A+ A G+
Sbjct: 138 AAITFLDKILEVCVWDAELRELRAECFIKEGE 169
Score = 126 bits (318), Expect = 6e-32
Identities = 21/124 (16%), Positives = 45/124 (36%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
+ L G + +A + A++ P+ A+ A+V GK AL +
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269
I ++ F A G+ L + + A + + ++ NP + + + K +
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122
Query: 270 FFIR 273
+
Sbjct: 123 LRSQ 126
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 164 bits (417), Expect = 5e-44
Identities = 33/279 (11%), Positives = 86/279 (30%), Gaps = 48/279 (17%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
+ +D +L+ + + K + A+ ++ A++ ++N
Sbjct: 220 EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN--DPLGAHEDIKKAIELFPRVNSYIY-- 275
Query: 63 YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSPDDGT 118
+ + +D + + L ++ +
Sbjct: 276 --------------MALIMADRNDSTEY----------------YNYFDKALKLDSNNSS 305
Query: 119 TFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKAL 177
+ + + ++ +A + ++ A L P + LA + + ++ L+ +A
Sbjct: 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAK 365
Query: 178 EVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL--------- 228
FPE + A +L + AL Y AI ++ Y + +
Sbjct: 366 RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425
Query: 229 KEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+++ A +A +++P A LA +
Sbjct: 426 PTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED 464
Score = 159 bits (403), Expect = 4e-42
Identities = 32/286 (11%), Positives = 81/286 (28%), Gaps = 78/286 (27%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
A + ++AIEL P ++Y +A + ++ N Y +
Sbjct: 254 LGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ 312
Query: 48 ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
+ A
Sbjct: 313 MNFILQNY------------DQA------------------------------------G 324
Query: 108 FCY----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKRE 162
+ L P++ + + + + + E ++ A R P + N A I +
Sbjct: 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD 384
Query: 163 QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQ---------GKLTDALLHYKEAIRI 213
+ ++A + Y A+E+ + + +A ++ + +A ++A ++
Sbjct: 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444
Query: 214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
P A + + +DI A+ + + + + +
Sbjct: 445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490
Score = 144 bits (365), Expect = 4e-37
Identities = 37/299 (12%), Positives = 90/299 (30%), Gaps = 36/299 (12%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
D AI Y A+EL+ + P Y NL+ G P++ A+
Sbjct: 23 DDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81
Query: 48 ALKEKGQ-------INVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMH 100
A + G+ ++VL + P + + + +
Sbjct: 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPT 141
Query: 101 NKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLA--- 157
S ++ + + + S + + Y+ + + L+NL
Sbjct: 142 ELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRS 201
Query: 158 ---------NIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK 208
+ + EE + ++ + A + + + A K
Sbjct: 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIK 261
Query: 209 EAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+AI + P ++Y M + + D + +A++++ + + + ++
Sbjct: 262 KAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319
Score = 143 bits (363), Expect = 8e-37
Identities = 28/265 (10%), Positives = 65/265 (24%), Gaps = 8/265 (3%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ-PNFPDAYCNLANALKEKGQINVLHKPPY 63
A +E ++ + + ++
Sbjct: 129 KFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADK 188
Query: 64 KYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYI 123
+ L + S + + ++ + L + +
Sbjct: 189 ELMNGL-----SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243
Query: 124 ISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE 182
L A E A+ L P +S +A I ++ E + KAL++
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN 302
Query: 183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYS 242
++ + + + A + +A + P Y + +S
Sbjct: 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362
Query: 243 RAIQINPGFADAHSNLASIHKDSGK 267
A + P + + A I D
Sbjct: 363 EAKRKFPEAPEVPNFFAEILTDKND 387
Score = 102 bits (255), Expect = 5e-23
Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 2/112 (1%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
+A +L + N ++A + Y ALE+ + +SNL++ G L +
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEM 61
Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL 258
+A+ ++P ++ + + + A+ S + +N F DA
Sbjct: 62 STKALELKPDYSKVLLRRASANEGLGKFADAMFDLS-VLSLNGDFNDASIEP 112
Score = 100 bits (252), Expect = 1e-22
Identities = 30/254 (11%), Positives = 63/254 (24%), Gaps = 62/254 (24%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
+ + +A++L N Y + P Y LA
Sbjct: 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLAC 346
Query: 48 ALKEKGQIN--VLHKPPYKYTRELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPGMHNK 102
+ + + + + P + +D + +
Sbjct: 347 LAYRENKFDDCETL---FSEAKRKFPEAPEVPNFFAEILTDKNDFDKA------------ 391
Query: 103 SRVEIFCY----ALSPDDGTTFS----------YIISVLLLIQVSEAEECYNTALRLCPT 148
+ Y L + + + EA A +L P
Sbjct: 392 ----LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447
Query: 149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK 208
+ LA +K +Q I+EA L+ ++ ++ + + K +
Sbjct: 448 SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT--FAEAAK-------VQ 498
Query: 209 EAIRIQPSFADAYS 222
+ IR P A
Sbjct: 499 QRIRSDPVLAKKIQ 512
Score = 94.4 bits (235), Expect = 2e-20
Identities = 17/87 (19%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
++A A + + + K DA+ +Y A+ ++ YSN+ + D++ ++
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEM 61
Query: 241 YSRAIQINPGFADAHSNLASIHKDSGK 267
++A+++ P ++ AS ++ GK
Sbjct: 62 STKALELKPDYSKVLLRRASANEGLGK 88
Score = 93.3 bits (232), Expect = 4e-20
Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 6/158 (3%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
+A + YN AL L +NL+ G +++ + KALE+ P+++ AS
Sbjct: 24 DAIKYYNWALELKEDP-VFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82
Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYS----NMGNTLKEMQDIQGALQCYSRAIQINP 249
+ GK DA+ + + F DA + M ++ A
Sbjct: 83 NEGLGKFADAMFDLS-VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPT 141
Query: 250 GFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLLD 287
+ + +++ + + L +
Sbjct: 142 ELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179
Score = 89.8 bits (223), Expect = 5e-19
Identities = 42/305 (13%), Positives = 80/305 (26%), Gaps = 74/305 (24%)
Query: 16 QPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHK 60
+ + A + N + + P Y NL+ G
Sbjct: 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGD------ 54
Query: 61 PPYK-----YTR--ELAPGN---RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY 110
K T+ EL P +R + G + + +
Sbjct: 55 --LKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADA-----------MFDLSVLSL 101
Query: 111 ALSPDDGTTFSYIISVLLLIQVSEAEE---CYNTALRLCPTHADSLNNLANIKR------ 161
+D + + L +S+ +E +TA + K+
Sbjct: 102 NGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161
Query: 162 -------EQGYIEEATRLYLKALEVFPEFAAAHSNLA------------SVLQQQGKLTD 202
E Y ++ E E SNL S + +
Sbjct: 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221
Query: 203 ALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIH 262
L E +++ A + + G D GA + +AI++ P +++ +A I
Sbjct: 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIM 280
Query: 263 KDSGK 267
D
Sbjct: 281 ADRND 285
Score = 79.0 bits (195), Expect = 1e-15
Identities = 31/211 (14%), Positives = 56/211 (26%), Gaps = 46/211 (21%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
D A + +A EL P Y LA + + P P+ A
Sbjct: 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA 379
Query: 47 NALKEKGQIN--VLHKPPYKYTR--ELAPGNR---IRIGYVSSDFGNHPTSHLMQSVPG- 98
L +K + + Y EL + I + + +++
Sbjct: 380 EILTDKNDFDKALKQ-----YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEA 434
Query: 99 --MHNKSRVEIFCYALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNN 155
+ K L P + + L + EA + + L T + L
Sbjct: 435 TNLLEK------ASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488
Query: 156 LANIKREQGYIEEATRLYLKALEVFPEFAAA 186
+ E +++ R P A
Sbjct: 489 ITF--AEAAKVQQRIRSD-------PVLAKK 510
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 154 bits (391), Expect = 1e-42
Identities = 36/261 (13%), Positives = 66/261 (25%), Gaps = 62/261 (23%)
Query: 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNL 45
L LA + + +A+ ++P+ P+ + L L + G P + A+ N
Sbjct: 58 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 117
Query: 46 ANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRV 105
AL G+ +LA D
Sbjct: 118 GIALYYGGRD------------KLA----------QDDLLAF------------------ 137
Query: 106 EIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIK---RE 162
Y P+D ++ + +A+E N + E
Sbjct: 138 ----YQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISE 193
Query: 163 QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS 222
Q +E + + + L G L A +K A+ +
Sbjct: 194 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 253
Query: 223 NMGNTLKEMQDIQGALQCYSR 243
L + Q L +
Sbjct: 254 YALLELSLLGQDQDDLAESDQ 274
Score = 138 bits (350), Expect = 5e-37
Identities = 25/175 (14%), Positives = 52/175 (29%), Gaps = 5/175 (2%)
Query: 128 LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH 187
+ ++ E+ + A L + G A + +AL + P+
Sbjct: 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVF 80
Query: 188 SNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI 247
+ L L Q G A + + + P++ A+ N G L + A Q
Sbjct: 81 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140
Query: 248 NPGFADAHSNLASIHKDSGKRG----FFIRTDLNSAYFWLLLLDAHSNLASIHKD 298
+P L + ++ + + W + L +I +
Sbjct: 141 DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQ 194
Score = 126 bits (318), Expect = 1e-32
Identities = 16/114 (14%), Positives = 41/114 (35%)
Query: 154 NNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI 213
L +++ + ++ E A + G A + +A+ I
Sbjct: 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI 72
Query: 214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+P + ++ +G L + + A + + ++++P + AH N G+
Sbjct: 73 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 126
Score = 122 bits (309), Expect = 2e-31
Identities = 14/137 (10%), Positives = 39/137 (28%), Gaps = 4/137 (2%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGY---IEEATRLYLKALEVFPEFAAAHSNL 190
A++ + P L +++ E + + K+ + + L
Sbjct: 129 LAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL 188
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
+ + +Q + + + ++ +G + D+ A + A+ N
Sbjct: 189 GN-ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247
Query: 251 FADAHSNLASIHKDSGK 267
H G+
Sbjct: 248 NFVEHRYALLELSLLGQ 264
Score = 87.4 bits (217), Expect = 3e-19
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 4/88 (4%)
Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIR----IQPSFADAYSNMGNTLKEMQDIQGALQ 239
LA LQ + L ++ + A G + A
Sbjct: 5 WRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARN 64
Query: 240 CYSRAIQINPGFADAHSNLASIHKDSGK 267
+S+A+ I P + + L +G
Sbjct: 65 DFSQALAIRPDMPEVFNYLGIYLTQAGN 92
Score = 44.2 bits (105), Expect = 7e-05
Identities = 6/90 (6%), Positives = 17/90 (18%), Gaps = 14/90 (15%)
Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQ----INPGFADAHSNLASIHKDSGKRGFFIR 273
+ L+ + L + + + A ++ G R
Sbjct: 5 WRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARN 64
Query: 274 -----TDLNSAYFWLLLLDAHSNLASIHKD 298
+ + + L
Sbjct: 65 DFSQALAIRPDMP-----EVFNYLGIYLTQ 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 148 bits (376), Expect = 3e-42
Identities = 42/116 (36%), Positives = 67/116 (57%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
EA E Y AL L P A++ NL N +QG +EA Y KALE+ P A A NL +
Sbjct: 19 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 78
Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
+QG +A+ +Y++A+ + P A+A+ N+GN + D A++ Y +A++++P
Sbjct: 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 143 bits (363), Expect = 2e-40
Identities = 39/118 (33%), Positives = 67/118 (56%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
A++ NL N +QG +EA Y KALE+ P A A NL + +QG +A+ +Y++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
A+ + P A+A+ N+GN + D A++ Y +A++++P A+A NL + + G
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 118
Score = 74.7 bits (185), Expect = 3e-16
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 15/70 (21%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
D AI+ Y++A+EL P +A+ NL NA ++G P +A+ NL
Sbjct: 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76
Query: 47 NALKEKGQIN 56
NA ++G +
Sbjct: 77 NAYYKQGDYD 86
Score = 52.8 bits (128), Expect = 1e-08
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ 35
D AI+ Y++A+EL P +A+ NL NA ++G
Sbjct: 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 118
Score = 51.6 bits (125), Expect = 4e-08
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE 182
EA E Y AL L P A++ NL N +QG +EA Y KALE+ P
Sbjct: 87 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Score = 48.9 bits (118), Expect = 3e-07
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 15/51 (29%)
Query: 21 DAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQIN 56
+A+ NL NA ++G P +A+ NL NA ++G +
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 52
Score = 28.1 bits (64), Expect = 5.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 2 IDLAIDTYRRAIELQPN 18
D AI+ Y++A+EL P
Sbjct: 119 YDEAIEYYQKALELDPR 135
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 154 bits (392), Expect = 4e-41
Identities = 34/298 (11%), Positives = 76/298 (25%), Gaps = 63/298 (21%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
A+ + A++ P+ AY A G+ +F A +
Sbjct: 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102
Query: 48 ALKEKGQIN--VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRV 105
L ++G+++ +K + P S + L
Sbjct: 103 LLLKQGKLDEAEDD---FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159
Query: 106 EIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGY 165
A + L +C A+ A ++G
Sbjct: 160 T---------------------------AAIAFLDKILEVCVWDAELRELRAECFIKEGE 192
Query: 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM- 224
+A A ++ + A ++++ Q G +L +E +++ +++
Sbjct: 193 PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 252
Query: 225 -----------GNTLKEMQDIQGALQCYSRAIQINPGFAD----AHSNLASIHKDSGK 267
L A Y ++ P A+ + + K
Sbjct: 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK 310
Score = 142 bits (361), Expect = 6e-37
Identities = 37/316 (11%), Positives = 76/316 (24%), Gaps = 97/316 (30%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYC---------------NLANALKEKGQ----------- 35
+D A D +++ ++ P+ + + A G
Sbjct: 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169
Query: 36 ----PNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSH 91
+ A ++G+ A
Sbjct: 170 LEVCVWDAELRELRAECFIKEGEP------------RKA--------------------- 196
Query: 92 LMQSVPGMHNKSRVEIFCYAL--SPDDGTTFSYIISVLLLIQ--VSEAEECYNTALRLCP 147
+ A D+ F Y IS L + L+L
Sbjct: 197 -------------ISDLKAASKLKNDNTEAF-YKISTLYYQLGDHELSLSEVRECLKLDQ 242
Query: 148 THADSLNNLANIKR------------EQGYIEEATRLYLKALEVFPEFAA----AHSNLA 191
H + +K+ G +AT Y ++ P A + +
Sbjct: 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERIC 302
Query: 192 SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251
+ K +A+ E ++++P +A + + A+Q Y A + N
Sbjct: 303 HCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362
Query: 252 ADAHSNLASIHKDSGK 267
L + +
Sbjct: 363 QQIREGLEKAQRLLKQ 378
Score = 124 bits (314), Expect = 1e-30
Identities = 35/276 (12%), Positives = 76/276 (27%), Gaps = 52/276 (18%)
Query: 19 FPDAYCNLANALKEKGQ----PNFPDAYCNLANALKEKGQINVLHKPPYK-----YTR-- 67
+ + L + + + L L GQ +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQ--------LADALSQFHAAV 53
Query: 68 ELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSPDDGTTFSYI 123
+ P N + T L G + + L D
Sbjct: 54 DGDPDN-------YIAYYRRATVFLAM---GKSKAA---LPDLTKVIQLKMDFTAARLQR 100
Query: 124 ISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIK---------------REQGYIE 167
+LL ++ EAE+ + L+ P+ + + + G
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160
Query: 168 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227
A K LEV A A ++G+ A+ K A +++ +A+ +
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTL 220
Query: 228 LKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263
++ D + +L ++++ ++ + K
Sbjct: 221 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256
Score = 122 bits (308), Expect = 6e-30
Identities = 25/152 (16%), Positives = 55/152 (36%), Gaps = 15/152 (9%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
Q+++A ++ A+ P + + A + G + A K +++ +F AA
Sbjct: 41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYS---------------NMGNTLKEMQDIQ 235
+L +QGKL +A +K+ ++ PS + + D
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160
Query: 236 GALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
A+ + +++ A+ A G+
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGE 192
Score = 109 bits (273), Expect = 2e-25
Identities = 22/119 (18%), Positives = 35/119 (29%), Gaps = 11/119 (9%)
Query: 149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK 208
H ++ + ++ H L L G+L DAL +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQS-----------MADVEKHLELGKKLLAAGQLADALSQFH 50
Query: 209 EAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
A+ P AY M + AL ++ IQ+ F A + GK
Sbjct: 51 AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK 109
Score = 108 bits (271), Expect = 3e-25
Identities = 32/270 (11%), Positives = 79/270 (29%), Gaps = 59/270 (21%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKP 61
AI + A +L+ + +A+ ++ + G + + + L +++ HK
Sbjct: 193 PRKAISDLKAASKLKNDNTEAFYKISTLYYQLG--DHELSLSEVRECL----KLDQDHKR 246
Query: 62 PYK-YTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTF 120
+ Y + I G +
Sbjct: 247 CFAHYKQVKKLNKLIESAEELIRDGRY--------------------------------- 273
Query: 121 SYIISVLLLIQVSEAEECYNTALRLCPTHAD----SLNNLANIKREQGYIEEATRLYLKA 176
++A Y + ++ P+ A+ S + + + EA R+ +
Sbjct: 274 ------------TDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321
Query: 177 LEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQG 236
L++ P+ A + A + +A+ Y+ A + + + ++ Q
Sbjct: 322 LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK 381
Query: 237 ALQCYSRAIQINPGFAD---AHSNLASIHK 263
++ N + A+ LA
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWH 411
Score = 93.6 bits (233), Expect = 2e-20
Identities = 32/271 (11%), Positives = 65/271 (23%), Gaps = 88/271 (32%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNL------------ANALKEKGQPNFPDAYCNLANAL 49
+L++ R ++L + + + A L G+ + DA + +
Sbjct: 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR--YTDATSKYESVM 284
Query: 50 KEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFC 109
K +P + C
Sbjct: 285 K--------TEPSIAEYTVRSKERI----------------------------------C 302
Query: 110 YALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
+ S + EA + L++ P + ++L + A + +EA
Sbjct: 303 HCFS--------------KDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEA 348
Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHY------------------KEAI 211
+ Y A E L + + + K A+
Sbjct: 349 IQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLAL 408
Query: 212 RIQPSFADAYSNMGNTLKEMQDIQGALQCYS 242
+ P K+ DI A + S
Sbjct: 409 QWHPDNFQNEEEKKKAEKKFIDIAAAKEVLS 439
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 144 bits (365), Expect = 8e-41
Identities = 39/120 (32%), Positives = 68/120 (56%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
A++ NL N +QG +EA Y KALE+ P A A NL + +QG +A+ +
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
Y++A+ + P+ A+A+ N+GN + D A++ Y +A++++P A+A NL + + G
Sbjct: 66 YQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 122 bits (309), Expect = 5e-33
Identities = 37/98 (37%), Positives = 57/98 (58%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
EA E Y AL L P +A++ NL N +QG +EA Y KALE+ P A A NL +
Sbjct: 27 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86
Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM 231
+QG +A+ +Y++A+ + P+ A+A N+GN ++
Sbjct: 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124
Score = 116 bits (293), Expect = 7e-31
Identities = 25/87 (28%), Positives = 49/87 (56%)
Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
A A NL + +QG +A+ +Y++A+ + P+ A+A+ N+GN + D A++
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 241 YSRAIQINPGFADAHSNLASIHKDSGK 267
Y +A++++P A+A NL + + G
Sbjct: 66 YQKALELDPNNAEAWYNLGNAYYKQGD 92
Score = 75.9 bits (188), Expect = 8e-17
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 15/70 (21%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
D AI+ Y++A+EL PN +A+ NL NA ++G PN +A+ NL
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 84
Query: 47 NALKEKGQIN 56
NA ++G +
Sbjct: 85 NAYYKQGDYD 94
Score = 74.4 bits (184), Expect = 4e-16
Identities = 29/65 (44%), Positives = 37/65 (56%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
EA E Y AL L P +A++ NL N +QG +EA Y KALE+ P A A NL +
Sbjct: 61 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120
Query: 194 LQQQG 198
Q+QG
Sbjct: 121 KQKQG 125
Score = 54.7 bits (133), Expect = 3e-09
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 15/55 (27%)
Query: 17 PNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQIN 56
N +A+ NL NA ++G PN +A+ NL NA ++G +
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 60
Score = 54.7 bits (133), Expect = 3e-09
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKG 34
D AI+ Y++A+EL PN +A NL NA +++G
Sbjct: 94 DEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A
{Actinobacillus pleuropneumoniae serovaorganism_taxid}
PDB: 3q3h_A* 3q3i_A
Length = 631
Score = 152 bits (385), Expect = 4e-39
Identities = 24/195 (12%), Positives = 54/195 (27%), Gaps = 40/195 (20%)
Query: 470 GLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRL 529
+ + + K++P L+ + + +
Sbjct: 436 RENPEVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHF------------------- 476
Query: 530 RPSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRG 589
L + + ++ ++ D + +++R
Sbjct: 477 ------------------ALGQSNGITHPYVERFIKSYLGD--SATAHPHSPYHQYLRIL 516
Query: 590 QLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPE-LIARTHK 648
D+ ++ +D++ G V G + + LG PE LIA T
Sbjct: 517 HNCDMMVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTVD 576
Query: 649 EYQDIAIRLGTDRDY 663
EY + A+RL +
Sbjct: 577 EYVERAVRLAENHQE 591
Score = 61.9 bits (150), Expect = 4e-10
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 323 QVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKER 382
Q + LG+P T+ + +++Y+I + + +SE L +P + + P +
Sbjct: 376 QAIALGHPATTHSDFIEYVIVEDD--YVGSEECFSETLLRLPKDALPYVPSALAPEKVDY 433
Score = 59.9 bits (145), Expect = 2e-09
Identities = 17/129 (13%), Positives = 29/129 (22%), Gaps = 14/129 (10%)
Query: 1 LIDLAIDTYRRAIELQ--PNFPDAYCNLANALKEKGQ-PNFPDAYCNLANALKEKGQINV 57
I + +RA LQ P D NL N +Y N K +N
Sbjct: 189 FIGTSTAFNKRATILQWFPRHLDQLKNLNNIPSAISHDVYMHCSYDTSVNKHDVKRALNH 248
Query: 58 L----------HKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
+ K + + + H + + + +
Sbjct: 249 VIRRHIESEYGWKDRDVAHIGYRNNKPVMVVLLEHFHSAHSIYRTHSTSM-IAAREHFYL 307
Query: 108 FCYALSPDD 116
D
Sbjct: 308 IGLGSPSVD 316
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 143 bits (364), Expect = 6e-39
Identities = 37/281 (13%), Positives = 68/281 (24%), Gaps = 46/281 (16%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
AI+ + + + N P Y A E + A ++ K
Sbjct: 20 AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELA--KYDLAQKDI-ETYFSKVNATKAKSAD 76
Query: 63 YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSPDDGT 118
++Y G + G + I Y
Sbjct: 77 FEY-----------YGKILMKKGQDSLA----------------IQQYQAAVDRDTTRLD 109
Query: 119 TFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKAL 177
+ I S A + +R T L +A ++K L
Sbjct: 110 MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169
Query: 178 EVFPEFAAAHSNLASVLQQQG---KLTDALLHYKEAIRIQPS--------FADAYSNMGN 226
E+ P + A Q K A +Y++ I + +A +
Sbjct: 170 ELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAY 229
Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+D A + + ++P A L +
Sbjct: 230 YYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270
Score = 137 bits (347), Expect = 1e-36
Identities = 32/275 (11%), Positives = 64/275 (23%), Gaps = 68/275 (24%)
Query: 20 PDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVLHKPPYK 64
D A+ L + N P Y A E + ++ K
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62
Query: 65 YTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYII 124
Y ++ + F Y
Sbjct: 63 YFSKVN-----------------------------------------ATKAKSADFEYYG 81
Query: 125 SVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF 183
+L+ Q S A + Y A+ T D + + +G A + K +
Sbjct: 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141
Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQD---IQGALQC 240
L + A + + + ++P+ Y A
Sbjct: 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPY 201
Query: 241 YSRAIQI--------NPGFADAHSNLASIHKDSGK 267
Y + I++ +A+ +A + +
Sbjct: 202 YEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236
Score = 135 bits (343), Expect = 4e-36
Identities = 16/136 (11%), Positives = 44/136 (32%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
+ E Y + + + I ++G A + Y A++ + + S
Sbjct: 58 KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253
+G A+ + ++ IR + + +G ++ A + + +++ P
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177
Query: 254 AHSNLASIHKDSGKRG 269
+ A +
Sbjct: 178 GYLWRARANAAQDPDT 193
Score = 123 bits (310), Expect = 1e-31
Identities = 32/262 (12%), Positives = 54/262 (20%), Gaps = 79/262 (30%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
I+TY + + L +KGQ D Y + +
Sbjct: 59 DIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYF 118
Query: 50 KEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFC 109
K G + I
Sbjct: 119 YNK---------------------------------------------GNFPLA---IQY 130
Query: 110 Y----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQG 164
+ D F + + +A+ + L L P A Q
Sbjct: 131 MEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQD 190
Query: 165 ---YIEEATRLYLKALEVFPE--------FAAAHSNLASVLQQQGKLTDALLHYKEAIRI 213
A Y K +EV A+ +A A +K + +
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250
Query: 214 QPSFADAYSNMGNTLKEMQDIQ 235
P+ A + L+
Sbjct: 251 DPTNKKAIDGLKMKLEHHHHHH 272
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 140 bits (354), Expect = 4e-38
Identities = 26/140 (18%), Positives = 54/140 (38%), Gaps = 3/140 (2%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
+A AL+ P + + A I + ++A + +AL + P+ A ++N
Sbjct: 23 DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82
Query: 191 ASVL-QQQGKLTDALLHYKEAIR--IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI 247
L + + +++ ++ +A+ P+ A N G + A R++
Sbjct: 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142
Query: 248 NPGFADAHSNLASIHKDSGK 267
P F A LA +G+
Sbjct: 143 QPQFPPAFKELARTKMLAGQ 162
Score = 135 bits (342), Expect = 2e-36
Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 3/132 (2%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANI-KREQGYIEEATRLYLKALEV--FPEFAAAH 187
+A+E + AL + P A+ NN E+ + KAL +P A+
Sbjct: 57 VNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIAN 116
Query: 188 SNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI 247
N +QG+ A + K ++ QP F A+ + T + A + +
Sbjct: 117 LNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176
Query: 248 NPGFADAHSNLA 259
L
Sbjct: 177 VEVLQADDLLLG 188
Score = 122 bits (309), Expect = 7e-32
Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 13/160 (8%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
++ LA +AT AL+ P+ A A + Q A
Sbjct: 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64
Query: 207 YKEAIRIQPSFADAYSNMGNTLK-EMQDIQGALQCYSRAIQ--INPGFADAHSNLASIHK 263
+++A+ I+P A+ +N G L + ++ + +A+ P A+ N
Sbjct: 65 FRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA 124
Query: 264 DSGK----RGFFIRT-DLNSAYFWLLLLDAHSNLASIHKD 298
G+ + R+ + A LA
Sbjct: 125 KQGQFGLAEAYLKRSLAAQPQF-----PPAFKELARTKML 159
Score = 115 bits (289), Expect = 3e-29
Identities = 35/266 (13%), Positives = 62/266 (23%), Gaps = 75/266 (28%)
Query: 14 ELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQINVL 58
E + LA P A+ A +
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVN--- 58
Query: 59 HKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSP 114
+ A + ++ P
Sbjct: 59 ---------DKA------------------------------------QESFRQALSIKP 73
Query: 115 DDGTTFSYIISVLLLIQVSEAEE---CYNTALR--LCPTHADSLNNLANIKREQGYIEEA 169
D L +++ E ++ AL PT + N +QG A
Sbjct: 74 DSAEIN-NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA 132
Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK 229
++L P+F A LA G+L DA ++K+ ++ K
Sbjct: 133 EAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD--DLLLGWK 190
Query: 230 EMQDIQGALQCYSRAIQINPGFADAH 255
+ + A Y Q+ F +
Sbjct: 191 IAKALGNAQAAYEYEAQLQANFPYSE 216
Score = 106 bits (267), Expect = 3e-26
Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 13/129 (10%)
Query: 178 EVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGA 237
E + + + LA + A ++A++ P A+ + ++ A
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61
Query: 238 LQCYSRAIQINPGFADAHSNLASIHKDSGKR-----GFF---IRTDLNSAYFWLLLLDAH 289
+ + +A+ I P A+ ++N R +F + + A+
Sbjct: 62 QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPY-----IAN 116
Query: 290 SNLASIHKD 298
N
Sbjct: 117 LNKGICSAK 125
Score = 100 bits (251), Expect = 4e-24
Identities = 34/219 (15%), Positives = 62/219 (28%), Gaps = 61/219 (27%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
D A +++R+A+ ++P+ + N L + ++ AL + P
Sbjct: 59 DKAQESFRQALSIKPDSAEINNNYGWFLCGRLN-RPAESMAYFDKALAD----------P 107
Query: 63 YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSY 122
T +A N+ G S+ G
Sbjct: 108 TYPTPYIANLNK---GICSAKQG------------------------------------- 127
Query: 123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE 182
Q AE +L P + LA K G + +A + K
Sbjct: 128 --------QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV 179
Query: 183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAY 221
A L + L +A Y+ ++Q +F +
Sbjct: 180 LQADDLLLG--WKIAKALGNAQAAYEYEAQLQANFPYSE 216
Score = 78.8 bits (195), Expect = 9e-17
Identities = 31/218 (14%), Positives = 54/218 (24%), Gaps = 48/218 (22%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
A + A++ P A+ A + P+ + N
Sbjct: 25 RQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84
Query: 48 ALKEKGQ-----INVLHK---PPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGM 99
L + + K P T +A N+ G S+ G +
Sbjct: 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK---GICSAKQGQFGLA--------- 132
Query: 100 HNKSRVEIFCY----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTH-ADSL 153
A P F + +L Q+ +A+ + AD L
Sbjct: 133 -------EAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDL 185
Query: 154 NNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191
I + G + A + FP + L
Sbjct: 186 LLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLT 223
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 145 bits (368), Expect = 8e-38
Identities = 47/306 (15%), Positives = 77/306 (25%), Gaps = 77/306 (25%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ-------------------PNFPDAYC 43
AID R+AI L P+ LA L + + P D
Sbjct: 192 QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLR 251
Query: 44 NLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKS 103
+ A + K + + K E P N+ H
Sbjct: 252 SAAKFYRRKDEPD-KAIELLKKALEYIP--------------NNAYLH--------CQIG 288
Query: 104 RVEIFCY---ALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIK 160
CY + LL + A A + LA++
Sbjct: 289 ----CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH 344
Query: 161 REQGYIEEATRLYLKALEVFPEFAAA---HSNLASVLQQQGKLTD-ALLHYKEAIRIQ-- 214
EEA + K A H + Q K D A+ H+ E ++I
Sbjct: 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404
Query: 215 ----------------------PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA 252
+ ++A + + + +Q A + R ++
Sbjct: 405 SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464
Query: 253 DAHSNL 258
A S
Sbjct: 465 SASSWN 470
Score = 139 bits (352), Expect = 1e-35
Identities = 45/338 (13%), Positives = 82/338 (24%), Gaps = 92/338 (27%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ------------------PNFPDAYCN 44
+ A + +A+E +P P+ LA A P+
Sbjct: 155 ERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214
Query: 45 LANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSR 104
LA L + + K E
Sbjct: 215 LALKLHKMREEGEEEGEGEKLVEE------------------------------------ 238
Query: 105 VEIFCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQ 163
+P + +A E AL P +A + R +
Sbjct: 239 ----ALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK 294
Query: 164 GY-------------------IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL 204
+ I A KA E S LAS+ + +A
Sbjct: 295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAE 354
Query: 205 LHYKEAIRIQPSFADA---YSNMGNTLK-EMQDIQGALQCYSRAIQINPGFADAHSNLAS 260
++++ + + + GN +M+ A+ + ++IN +
Sbjct: 355 YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDK 414
Query: 261 IHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNLASIHKD 298
+ K + R N A A LA + +
Sbjct: 415 LQKIAKM-----RLSKNGADSE-----ALHVLAFLQEL 442
Score = 134 bits (338), Expect = 9e-34
Identities = 44/279 (15%), Positives = 77/279 (27%), Gaps = 26/279 (9%)
Query: 2 IDLAIDTYRRAIELQPNFPDA--YCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLH 59
+D D E Q A LA KGQ A L A ++
Sbjct: 31 LDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNE--AALECLRKAE----ELIQQE 84
Query: 60 KPPYKYTRELAP-GNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGT 118
R L GN +V G + + F +
Sbjct: 85 HADQAEIRSLVTWGN---YAWVYYHMGRLSDVQIYVDKVKHVCE----KFSSPYRIESPE 137
Query: 119 TFSYIISVLLLI---QVSEAEECYNTALRLCPTHADSLNNLANIKR---EQGYIEEATRL 172
L Q A+ C+ AL P + + + LA + A
Sbjct: 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDP 197
Query: 173 YLKALEVFPEFAAAHSNLASVLQ----QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL 228
+A+ + P+ LA L + + + +EA+ P D +
Sbjct: 198 LRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFY 257
Query: 229 KEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ + A++ +A++ P A H + ++
Sbjct: 258 RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVF 296
Score = 103 bits (257), Expect = 2e-23
Identities = 28/235 (11%), Positives = 57/235 (24%), Gaps = 35/235 (14%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKP 61
D AI+ ++A+E PN +C + + K + K I
Sbjct: 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322
Query: 62 PYKYTRELAPGN---RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALS----P 114
K E + + + + + F S P
Sbjct: 323 -LKKADEANDNLFRVCSILASLHALADQY--------------EEAEYYFQKEFSKELTP 367
Query: 115 DDGTTFSYIISVLLLIQ---VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATR 171
L Q +A + +++ + +++
Sbjct: 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQK---------- 417
Query: 172 LYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
+ L + A LA + + K+ A + + A S G
Sbjct: 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472
Score = 91.5 bits (227), Expect = 1e-19
Identities = 30/161 (18%), Positives = 51/161 (31%), Gaps = 21/161 (13%)
Query: 130 IQVSEAEECYNTALRLCPT--HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH 187
+ + E+ A N LA +K +G E A KA E+ + A
Sbjct: 29 NSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ 88
Query: 188 ---------SNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYS--------NMGNTLKE 230
N A V G+L+D ++ + + F+ Y G T +
Sbjct: 89 AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLK 148
Query: 231 M--QDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269
+ A C+ +A++ P + S LA
Sbjct: 149 CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWP 189
Score = 77.7 bits (191), Expect = 3e-15
Identities = 25/195 (12%), Positives = 54/195 (27%), Gaps = 44/195 (22%)
Query: 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHK 60
LI A+ ++A E N LA+ Q + +A
Sbjct: 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQ--YEEAEYYFQKEFS---------- 362
Query: 61 PPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE-IFCY----ALSPD 115
+EL P + + +F + K + I + ++
Sbjct: 363 ------KELTPVAKQLLHLRYGNFQLY------------QMKCEDKAIHHFIEGVKINQK 404
Query: 116 DGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLK 175
+ ++ L +++L+ LA ++ +++A +
Sbjct: 405 SREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER 455
Query: 176 ALEVFPEFAAAHSNL 190
LE +A S
Sbjct: 456 GLESGSLIPSASSWN 470
Score = 39.9 bits (93), Expect = 0.002
Identities = 6/62 (9%), Positives = 12/62 (19%), Gaps = 15/62 (24%)
Query: 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNL 45
+ D + + +A LA + + P A
Sbjct: 411 MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470
Query: 46 AN 47
Sbjct: 471 GE 472
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 144 bits (364), Expect = 3e-37
Identities = 38/285 (13%), Positives = 79/285 (27%), Gaps = 65/285 (22%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
D R+ ++Q + L A AL + +
Sbjct: 68 HSVEDAGRKQQDVQEEMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVL 125
Query: 63 YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSY 122
+L P + + G +
Sbjct: 126 LSKAVKLEP--------------ELVEAW--------NQL--------------GEVYWK 149
Query: 123 IISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG---------YIEEATRLY 173
V+ A C++ AL C + SL NL+ + R+ ++ ++ R
Sbjct: 150 ------KGDVTSAHTCFSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA 202
Query: 174 LKALEVFPEFAAAHSNLASVL--------QQQGKLTDALLHYKEAIRIQ---PSFADAYS 222
A+++ + L + Q AL Y +A ++ S D +
Sbjct: 203 KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHL 262
Query: 223 NMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
N K + AL+ +S+A ++P + + + + +
Sbjct: 263 NRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307
Score = 119 bits (299), Expect = 8e-29
Identities = 50/355 (14%), Positives = 104/355 (29%), Gaps = 58/355 (16%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKG----------------QPNFPDAYCNL 45
++ + + A AL +P +A+ L
Sbjct: 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQL 143
Query: 46 ANALKEKGQIN---------VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSV 96
+KG + + H + L+ R + +D G+ + H+M SV
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLR----QLQTDSGDEHSRHVMDSV 199
Query: 97 PGMHNKSRVEIFCYALSPDD-------GTTFSYIISVLL--LIQVSEAEECYNTALRL-- 145
K V++ D G + + +A Y A ++
Sbjct: 200 --RQAKLAVQM-----DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252
Query: 146 -CPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDAL 204
++ D N A + + + EA + +A + P + +L+ +LT L
Sbjct: 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL 312
Query: 205 LHY-----KEAIRIQPSFADAYSNM-GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL 258
K+ + S A+ G+ + Q + PG L
Sbjct: 313 ESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQPGVNSGTVVL 372
Query: 259 ----ASIHKDSGKRGFFIRTDLNSAYFWLLLLDAHSNLASIHKDSVVMSLLQIIH 309
S+ + F D + + +++ + + + DSV + + H
Sbjct: 373 GKVVFSLTTEEKVPFTFGLVDSDGPCYAVMVYNVVQSWGVLIGDSVAIPEPNLRH 427
Score = 103 bits (257), Expect = 2e-23
Identities = 22/172 (12%), Positives = 56/172 (32%), Gaps = 19/172 (11%)
Query: 114 PDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKRE----------- 162
G+ + + + + S + A + ++ L +
Sbjct: 15 VPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAG 74
Query: 163 ------QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLT-DALLHYKEAIRIQP 215
Q +E+ + + L A A L + +A + +A++++P
Sbjct: 75 RKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP 134
Query: 216 SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+A++ +G + D+ A C+S A+ + NL+ + +
Sbjct: 135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQT 185
Score = 47.7 bits (113), Expect = 8e-06
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 12/123 (9%)
Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
A VLQ+ L D L ++++ S DA + +EM+ LQ
Sbjct: 34 SMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEK---TLQQ 90
Query: 241 YSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLLL-----DAHSNLASI 295
+ A A + L+ A + L +A + L +
Sbjct: 91 MEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKA----VKLEPELVEAWNQLGEV 146
Query: 296 HKD 298
+
Sbjct: 147 YWK 149
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 140 bits (353), Expect = 1e-34
Identities = 34/281 (12%), Positives = 82/281 (29%), Gaps = 27/281 (9%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
+ +A L P+ A + + P+ A +
Sbjct: 311 QRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 370
Query: 48 ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
+ + L P L P + ++S+ G + + +P +
Sbjct: 371 GKQALETVQRL-LPVLCQAHGLTPDQ---VVAIASNGGKQALETVQRLLPVLCQA----- 421
Query: 108 FCYALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYI 166
+ L+PD + + V L P ++ + K+ +
Sbjct: 422 --HGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETV 479
Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
++ + +A + P+ A ++ Q + L +A + P A ++ G
Sbjct: 480 QQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGG 539
Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ ++ +Q L +A + P A ++ +
Sbjct: 540 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 580
Score = 139 bits (352), Expect = 2e-34
Identities = 31/282 (10%), Positives = 79/282 (28%), Gaps = 26/282 (9%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
+ + +A L P+ A + + P A +
Sbjct: 411 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHD 470
Query: 47 NALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE 106
+ + L + + S+ G + + + +P + ++
Sbjct: 471 GGKQALETVQQLLPV---LCQAHGLTPDQVVAIASNIGGKQALATVQRLLP-VLCQA--- 523
Query: 107 IFCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGY 165
+ L+PD + L V A L P ++ + K+
Sbjct: 524 ---HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 580
Query: 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
++ + +A + A ++ Q + L +A + P+ A ++
Sbjct: 581 VQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHD 640
Query: 226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ ++ +Q L +A + P A ++ +
Sbjct: 641 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 682
Score = 135 bits (340), Expect = 5e-33
Identities = 32/279 (11%), Positives = 73/279 (26%), Gaps = 30/279 (10%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
+ +A L P+ A + + P+ A +
Sbjct: 514 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 573
Query: 48 ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
+ + L P L ++ + + +
Sbjct: 574 GKQALETVQRL-LPVLCQAHGLTQVQ-------VVAIASNIGGKQALE----TVQRLLPV 621
Query: 108 FCYAL--SPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQG 164
C A +P + L V A L P ++ + K+
Sbjct: 622 LCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 681
Query: 165 YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM 224
++ + +A + E A ++ Q + L +A + P A ++
Sbjct: 682 TVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 741
Query: 225 GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263
G + ++ +Q L +A + P A ++ +
Sbjct: 742 GGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQ 780
Score = 134 bits (337), Expect = 1e-32
Identities = 27/281 (9%), Positives = 65/281 (23%), Gaps = 60/281 (21%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
+ +A L P+ A + + P+ A +
Sbjct: 480 QQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGG 539
Query: 48 ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
+ + L +
Sbjct: 540 GKQALETVQRLLP---VLCQAHG------------------------------------- 559
Query: 108 FCYALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYI 166
L+PD + + V A L ++ + K+ +
Sbjct: 560 ----LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETV 615
Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
+ + +A + P A ++ Q + L +A + P A ++ G
Sbjct: 616 QRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 675
Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ ++ +Q L +A + A ++ +
Sbjct: 676 GKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALET 716
Score = 133 bits (336), Expect = 2e-32
Identities = 32/280 (11%), Positives = 72/280 (25%), Gaps = 25/280 (8%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
+ +A L P+ A + + P+ A +
Sbjct: 277 QRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDG 336
Query: 48 ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
+ + L P L P + I ++ +
Sbjct: 337 GKQALETVQRL-LPVLCQAHGLTPDQVVAI-------ASNGGGKQALETVQRLLPVLCQA 388
Query: 108 FCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIE 167
+ L+PD + L V A L P ++ + K+ ++
Sbjct: 389 --HGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQ 446
Query: 168 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNT 227
+ + + P A ++ Q + L +A + P A ++
Sbjct: 447 RLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGG 506
Query: 228 LKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ + +Q L +A + P A ++ +
Sbjct: 507 KQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 546
Score = 132 bits (334), Expect = 3e-32
Identities = 29/281 (10%), Positives = 67/281 (23%), Gaps = 61/281 (21%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
+ +A L P A + + P+ A +
Sbjct: 209 QRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIG 268
Query: 48 ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
+ + + +
Sbjct: 269 GKQALET---VQRLLPVLCQAHG------------------------------------- 288
Query: 108 FCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYI 166
L+PD + L V A L P ++ + K+ +
Sbjct: 289 ----LTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETV 344
Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
+ + +A + P+ A ++ Q + L +A + P A ++ G
Sbjct: 345 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 404
Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ ++ +Q L +A + P A ++ +
Sbjct: 405 -KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALET 444
Score = 132 bits (333), Expect = 4e-32
Identities = 29/281 (10%), Positives = 67/281 (23%), Gaps = 61/281 (21%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
+ +A L P+ A + + P+ A +
Sbjct: 243 QRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGG 302
Query: 48 ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
+ R L +
Sbjct: 303 GKQALE----------TVQRLLPVLCQA-------------------------------- 320
Query: 108 FCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYI 166
+ L+PD + L V A L P ++ + K+ +
Sbjct: 321 --HGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 378
Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
+ + +A + P+ A ++ Q + L +A + P A ++
Sbjct: 379 QRLLPVLCQAHGLTPDQVVAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVAIASHDG 437
Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ ++ +Q L + + P A ++ +
Sbjct: 438 GKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALET 478
Score = 129 bits (325), Expect = 4e-31
Identities = 22/158 (13%), Positives = 50/158 (31%), Gaps = 1/158 (0%)
Query: 111 ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
L+P + L V A L P ++ + K+ ++
Sbjct: 186 NLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRL 245
Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK 229
+ +A + P+ A ++ Q + L +A + P A ++ G +
Sbjct: 246 LPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQ 305
Query: 230 EMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
++ +Q L +A + P A ++ +
Sbjct: 306 ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALET 343
Score = 127 bits (319), Expect = 2e-30
Identities = 33/282 (11%), Positives = 74/282 (26%), Gaps = 29/282 (10%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLAN---------ALKEKGQ-----PNFPDAYCNLANA 48
+ +A L P+ A + L Q P+ A +
Sbjct: 379 QRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGG 438
Query: 49 LKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF 108
+ + L P T L P +H + + +
Sbjct: 439 KQALETVQRL-LPVLCQTHGLTPAQ-------VVAIASHDGGKQALE----TVQQLLPVL 486
Query: 109 CYALSPDDGTTFSYIISVLLLI---QVSEAEECYNTALRLCPTHADSLNNLANIKREQGY 165
C A + ++ V A L P ++ + K+
Sbjct: 487 CQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 546
Query: 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
++ + +A + P+ A ++ Q + L +A + A ++
Sbjct: 547 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNI 606
Query: 226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ ++ +Q L +A + P A ++ +
Sbjct: 607 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALET 648
Score = 127 bits (319), Expect = 2e-30
Identities = 34/319 (10%), Positives = 83/319 (26%), Gaps = 39/319 (12%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
+ + +A L P+ A + + P+ A +
Sbjct: 344 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 403
Query: 47 NALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVE 106
+ +L P L P + + G V+
Sbjct: 404 GKQALETVQRLL--PVLCQAHGLTP--------------DQVVAIASHDG-GKQALETVQ 446
Query: 107 --IFCY----ALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANI 159
+ L+P + L V + A L P ++ +
Sbjct: 447 RLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGG 506
Query: 160 KREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD 219
K+ ++ + +A + P+ A ++ Q + L +A + P
Sbjct: 507 KQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566
Query: 220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSA 279
A ++ G + ++ +Q L +A + A ++ + + +
Sbjct: 567 AIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAH 626
Query: 280 YFWLLLLDAHSNLASIHKD 298
+ A ++ +
Sbjct: 627 GLTPAQVVAIASHDGGKQA 645
Score = 115 bits (290), Expect = 8e-27
Identities = 28/272 (10%), Positives = 74/272 (27%), Gaps = 26/272 (9%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
+ +A L P+ A + + A +
Sbjct: 548 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIG 607
Query: 48 ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
+ + + + + S D G + + +P + ++
Sbjct: 608 GKQALET---VQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLP-VLCQA---- 659
Query: 108 FCYALSPDDGTTFSYIISVLL-LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYI 166
+ L+PD + L V A L ++ + K+ +
Sbjct: 660 --HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETV 717
Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
+ + +A + P+ A ++ Q + L +A + P+ A ++
Sbjct: 718 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIG 777
Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNL 258
+ ++ +Q L + + A ++
Sbjct: 778 GKQALETVQRLLPVLCQDHGLTLAQVVAIASN 809
Score = 112 bits (281), Expect = 1e-25
Identities = 20/139 (14%), Positives = 45/139 (32%), Gaps = 5/139 (3%)
Query: 134 EAEECYNTALR-----LCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS 188
EA AL L P ++ + K+ ++ + +A + P A +
Sbjct: 171 EAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIA 230
Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248
+ Q + L +A + P A ++ + ++ +Q L +A +
Sbjct: 231 SHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 290
Query: 249 PGFADAHSNLASIHKDSGK 267
P A ++ +
Sbjct: 291 PDQVVAIASHGGGKQALET 309
Score = 99.0 bits (246), Expect = 1e-21
Identities = 18/135 (13%), Positives = 42/135 (31%)
Query: 133 SEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 192
++A E L+L + + + L L + P A ++
Sbjct: 141 TDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNG 200
Query: 193 VLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA 252
Q + L +A + P+ A ++ + ++ +Q L +A + P
Sbjct: 201 GKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQV 260
Query: 253 DAHSNLASIHKDSGK 267
A ++ +
Sbjct: 261 VAIASNIGGKQALET 275
Score = 85.5 bits (211), Expect = 2e-17
Identities = 29/274 (10%), Positives = 73/274 (26%), Gaps = 31/274 (11%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
+ +A L P+ A + + P A +
Sbjct: 718 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIG 777
Query: 48 ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
+ + L P L + I N +++V + + +
Sbjct: 778 GKQALETVQRL-LPVLCQDHGLTLAQVVAIAS------NIGGKQALETV-----QRLLPV 825
Query: 108 FC--YALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQG 164
C + L+ D + I + V L P ++ + K+
Sbjct: 826 LCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALE 885
Query: 165 YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNM 224
++ + + + + A ++ Q + L + + P A ++
Sbjct: 886 TVQRLLPVLCQDHGLTLDQVVAIASNGGK-QALETVQRLLPVLCQDHGLTPDQVVAIASN 944
Query: 225 GNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL 258
+ ++ +Q L + + P A ++
Sbjct: 945 SGGKQALETVQRLLPVLCQDHGLTPNQVVAIASN 978
Score = 84.7 bits (209), Expect = 4e-17
Identities = 30/277 (10%), Positives = 73/277 (26%), Gaps = 27/277 (9%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
+ +A L A + + P+ A +
Sbjct: 684 QRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 743
Query: 48 ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
+ + L P L P + S+ G + + +P +
Sbjct: 744 GKQALETVQRLL-PVLCQAHGLTPAQVVA--IASNIGGKQALETVQRLLPVLCQD----- 795
Query: 108 FCYALSPDD-GTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYI 166
+ L+ S I L V A L ++ + K+ +
Sbjct: 796 --HGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETV 853
Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
+ + + + P+ A ++ Q + L + + A ++ G
Sbjct: 854 QRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGG 913
Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263
+ ++ +Q L + + P A ++ + +
Sbjct: 914 K-QALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQ 949
Score = 77.0 bits (189), Expect = 1e-14
Identities = 29/273 (10%), Positives = 72/273 (26%), Gaps = 26/273 (9%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
+ +A L P+ A + + A +
Sbjct: 650 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNG 709
Query: 48 ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
+ + L P L P + S+ G + + +P + ++
Sbjct: 710 GKQALETVQRLL-PVLCQAHGLTPDQ--VVAIASNGGGKQALETVQRLLP-VLCQA---- 761
Query: 108 FCYALSPDDGTTF-SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYI 166
+ L+P S I L V L ++ + K+ +
Sbjct: 762 --HGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETV 819
Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
+ + +A + + A ++ Q + L + + P A ++
Sbjct: 820 QRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIG 879
Query: 227 TLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
+ ++ +Q L + + A ++
Sbjct: 880 GKQALETVQRLLPVLCQDHGLTLDQVVAIASNG 912
Score = 46.6 bits (110), Expect = 3e-05
Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 10/135 (7%)
Query: 139 YNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG 198
++ AL H + ++ + + + Y + PE + Q G
Sbjct: 77 HHEALVG---HGFTHAHIVALSQHPAALGTVAVTYQHIITALPEATHED-IVGVGKQWSG 132
Query: 199 KLT-DALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRA-----IQINPGFA 252
+ALL +R P D + + A+ A + + P
Sbjct: 133 ARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQV 192
Query: 253 DAHSNLASIHKDSGK 267
A ++ +
Sbjct: 193 VAIASNNGGKQALET 207
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 121 bits (306), Expect = 9e-32
Identities = 20/154 (12%), Positives = 47/154 (30%), Gaps = 17/154 (11%)
Query: 131 QVSEAEECYNTALRLCPTHAD----------------SLNNLANIKREQGYIEEATRLYL 174
Q +A + + L + LA ++ ++A Y
Sbjct: 19 QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78
Query: 175 KALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEM-QD 233
+ L+ P A + +G+ DAL Y++ ++++ A +GN +
Sbjct: 79 ELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138
Query: 234 IQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ L+ + + A + +
Sbjct: 139 EKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTR 172
Score = 119 bits (301), Expect = 4e-31
Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 2/135 (1%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
+A Y L+ P + D L A ++ +G ++A R+Y K L++ + AA+ L +
Sbjct: 72 KAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY 131
Query: 194 LQQQGKLTD-ALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA 252
+ L + + A G + + A + I P
Sbjct: 132 YYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191
Query: 253 DAHSNLASIHKDSGK 267
A L I + +
Sbjct: 192 -AQKTLDKILRIEKE 205
Score = 112 bits (281), Expect = 2e-28
Identities = 19/137 (13%), Positives = 45/137 (32%), Gaps = 16/137 (11%)
Query: 148 THADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH----------------SNLA 191
D + + E G +A + + + + + + + LA
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61
Query: 192 SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251
++ A L YKE ++ P+ D + AL+ Y + +Q+
Sbjct: 62 LAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121
Query: 252 ADAHSNLASIHKDSGKR 268
A+ L + + + ++
Sbjct: 122 LAANIFLGNYYYLTAEQ 138
Score = 79.8 bits (197), Expect = 4e-17
Identities = 32/211 (15%), Positives = 55/211 (26%), Gaps = 38/211 (18%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQ----INVL 58
A+ +R+ I L + + Y +K LA A K+
Sbjct: 21 GQAVSYFRQTIALNIDRTEMYYWTN---VDKNSEISSKLATELALAYKKNRNYDKAYLF- 76
Query: 59 HKPPYKYTRELAPGN---RIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----A 111
YK + AP N + G + + Y
Sbjct: 77 ----YKELLQKAPNNVDCLEACAEMQVCRGQEKDA----------------LRMYEKILQ 116
Query: 112 LSPDDGTTFSYI--ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
L D+ ++ L Q + E L + K E+A
Sbjct: 117 LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKA 176
Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKL 200
K + FP A L +L+ + ++
Sbjct: 177 RNSLQKVILRFPS-TEAQKTLDKILRIEKEV 206
Score = 65.9 bits (161), Expect = 2e-12
Identities = 22/184 (11%), Positives = 37/184 (20%), Gaps = 64/184 (34%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
D A Y+ ++ PN D A +GQ + A L N
Sbjct: 71 DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGN 130
Query: 48 ALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
+ K ++E
Sbjct: 131 YYYLTAE---------------------------------------------QEKKKLET 145
Query: 108 FCYALS--PDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQG 164
LS L + +A + P+ + L I R +
Sbjct: 146 DYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKILRIEK 204
Query: 165 YIEE 168
+
Sbjct: 205 EVNR 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 115 bits (290), Expect = 6e-31
Identities = 25/86 (29%), Positives = 49/86 (56%)
Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
A A NL + +QG +A+ +Y++A+ + P+ A+A+ N+GN + D A++
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 241 YSRAIQINPGFADAHSNLASIHKDSG 266
Y +A++++P A+A NL + + G
Sbjct: 66 YQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 104 bits (262), Expect = 4e-27
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
A++ NL N +QG +EA Y KALE+ P A A NL + +QG +A+ +
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 207 YKEAIRIQPSFADAYSNMGNTLKE 230
Y++A+ + P+ A+A N+GN ++
Sbjct: 66 YQKALELDPNNAEAKQNLGNAKQK 89
Score = 76.7 bits (190), Expect = 2e-17
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 15/66 (22%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
D AI+ Y++A+EL PN +A+ NL NA ++G PN +A NL N
Sbjct: 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85
Query: 48 ALKEKG 53
A +++G
Sbjct: 86 AKQKQG 91
Score = 75.1 bits (186), Expect = 8e-17
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 215 PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRT 274
+ A+A+ N+GN + D A++ Y +A++++P A+A NL + + G
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD------- 58
Query: 275 DLNSA---YFWLLLL-----DAHSNLASIHKD 298
+ A Y L L +A NL + +
Sbjct: 59 -YDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89
Score = 73.6 bits (182), Expect = 2e-16
Identities = 29/65 (44%), Positives = 37/65 (56%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
EA E Y AL L P +A++ NL N +QG +EA Y KALE+ P A A NL +
Sbjct: 27 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86
Query: 194 LQQQG 198
Q+QG
Sbjct: 87 KQKQG 91
Score = 55.9 bits (136), Expect = 4e-10
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 15/55 (27%)
Query: 17 PNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQIN 56
N +A+ NL NA ++G PN +A+ NL NA ++G +
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 117 bits (294), Expect = 2e-28
Identities = 59/316 (18%), Positives = 100/316 (31%), Gaps = 77/316 (24%)
Query: 5 AIDTYRRAIELQ----PNFPDAYCNLANALKEKGQP------------------NFPD-- 40
+ ++ AI+ Y L NA G +
Sbjct: 67 GVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126
Query: 41 -AYCNLANALKEKGQIN---VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSV 96
+ NL N LK G+ + + + R+L G+R+ G + GN
Sbjct: 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGN---------- 174
Query: 97 PGMHNKSRVEIFCY-ALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLC------PTH 149
Y A G + ++ A E Y L+L
Sbjct: 175 ------------VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQ 222
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKLTDA 203
+ NL N G + A + + L + EF A+SNL + G+ DA
Sbjct: 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282
Query: 204 LLHYKEAIRI------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI------NPGF 251
HYK + + + A + ++GNT + + A++ ++R + I G
Sbjct: 283 AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 342
Query: 252 ADAHSNLASIHKDSGK 267
A A +L + H G
Sbjct: 343 ARACWSLGNAHSAIGG 358
Score = 102 bits (256), Expect = 2e-23
Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 22/161 (13%)
Query: 129 LIQVSEAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVF-- 180
L ++ + + L G + A++
Sbjct: 21 LGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE 80
Query: 181 --PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI------QPSFADAYSNMGNTLKEMQ 232
+A +S L + G A+ ++K + + + A + N+GNTLK M
Sbjct: 81 DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140
Query: 233 DIQGALQCYSRAIQI------NPGFADAHSNLASIHKDSGK 267
A C R + + A NL +++ GK
Sbjct: 141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181
Score = 72.3 bits (178), Expect = 1e-13
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 12/92 (13%)
Query: 134 EAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVF------P 181
+A E Y L L A S +L N A + + L +
Sbjct: 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340
Query: 182 EFAAAHSNLASVLQQQGKLTDALLHYKEAIRI 213
A A +L + G AL + ++ +++
Sbjct: 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQL 372
Score = 41.1 bits (97), Expect = 0.001
Identities = 33/199 (16%), Positives = 63/199 (31%), Gaps = 52/199 (26%)
Query: 5 AIDTYRRAIELQPNFPD------AYCNLANALKEKGQPNFPDA--YCNLANALKEK---- 52
A++ Y+ ++L + D A NL N G +F A + + +
Sbjct: 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLG--DFQAAIEHHQERLRIAREFGDR 259
Query: 53 -GQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPT--SHLMQSVP---GMHNKSRVE 106
+ N +G G H +++ + +
Sbjct: 260 AAERRANS-------------N---LGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303
Query: 107 IFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLC------PTHADSLNNLANIK 160
CY+L G T++ LL + + A E +N L + A + +L N
Sbjct: 304 QSCYSL----GNTYT------LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH 353
Query: 161 REQGYIEEATRLYLKALEV 179
G E A + + L++
Sbjct: 354 SAIGGHERALKYAEQHLQL 372
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 107 bits (271), Expect = 4e-28
Identities = 13/108 (12%), Positives = 38/108 (35%), Gaps = 2/108 (1%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
+ + ++ + G E+ L+ KA+++ PE + L + +A+
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62
Query: 207 YKEAIRIQP--SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA 252
Y I + D ++ + L+ ++ + + ++
Sbjct: 63 YNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110
Score = 96.4 bits (241), Expect = 5e-24
Identities = 13/89 (14%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
+ + + G T+++ +++AI++ P + + G L ++ + A+ C
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62
Query: 241 YSRAIQINP--GFADAHSNLASIHKDSGK 267
Y+ I + D + A +
Sbjct: 63 YNYVINVIEDEYNKDVWAAKADALRYIEG 91
Score = 65.9 bits (162), Expect = 2e-13
Identities = 6/55 (10%), Positives = 19/55 (34%)
Query: 213 IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ + Y G + + ++ + +AIQ++P + + +
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER 55
Score = 59.0 bits (144), Expect = 6e-11
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 17/67 (25%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ-----------------PNFPDAYCNLAN 47
+ID + +AI+L P + AL + D + A+
Sbjct: 25 SIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84
Query: 48 ALKEKGQ 54
AL+
Sbjct: 85 ALRYIEG 91
Score = 45.5 bits (109), Expect = 3e-06
Identities = 6/53 (11%), Positives = 10/53 (18%), Gaps = 15/53 (28%)
Query: 17 PNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQ 54
P+ Y + G P + AL +
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 111 bits (280), Expect = 1e-26
Identities = 56/357 (15%), Positives = 103/357 (28%), Gaps = 84/357 (23%)
Query: 3 DLAIDTYRRAIELQ----PNFPDAYCNLANALKEKGQ---------------------PN 37
+ + A+++ Y L NA
Sbjct: 26 RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85
Query: 38 FPDAYCNLANALKEKGQIN---VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQ 94
A NL N LK G + V + +REL +++ + GN + +
Sbjct: 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGN---VYHAK 140
Query: 95 SVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLC------PT 148
G + A + Y L L
Sbjct: 141 ---GKSFGCPGPQDVGEFPEEVRDALQ------------AAVDFYEENLSLVTALGDRAA 185
Query: 149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKLTD 202
+ NL N G +A + + L + EF A+SNL + G+
Sbjct: 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245
Query: 203 ALLHYKEAIRI------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI------NPG 250
A +YK+ + + + A + ++GNT +QD + A+ + + + I G
Sbjct: 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG 305
Query: 251 FADAHSNLASIHKDSG---------KRGFFIRTDLNSAYFWLLLLDAHSNLASIHKD 298
A +L + + G ++ I ++ L A NL+ +
Sbjct: 306 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS---GELTARLNLSDLQMV 359
Score = 96.2 bits (240), Expect = 2e-21
Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 16/134 (11%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVF----PEFAAAHSNLASVLQQQGKLTDALL 205
L + G + A++V +A +S L + AL
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68
Query: 206 HYKEAIRI------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN------PGFAD 253
++ + + Q A A N+GNTLK + + A+ C R + I+ G A
Sbjct: 69 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128
Query: 254 AHSNLASIHKDSGK 267
A NL +++ GK
Sbjct: 129 ALYNLGNVYHAKGK 142
Score = 79.3 bits (196), Expect = 8e-16
Identities = 47/309 (15%), Positives = 88/309 (28%), Gaps = 66/309 (21%)
Query: 3 DLAIDTYRRAIELQPNFPD------AYCNLANALKEKGQPNFPDAYCNLANALKEKGQIN 56
D AI +R +++ D A NL N KG+ ++ +E
Sbjct: 104 DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD-- 161
Query: 57 VLHKPPYK-----YTRELA----PGNRI-------RIGYVSSDFGNHPTSHLMQSVPGMH 100
+ Y L+ G+R +G GN +V H
Sbjct: 162 -----ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR-----DAVI-AH 210
Query: 101 NKSRVEIF-CYALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLC------PTHADS 152
+ + I + + +S + + + + + A E Y L L A S
Sbjct: 211 EQR-LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 269
Query: 153 LNNLANIKREQGYIEEATRLYLKALEVF------PEFAAAHSNLASVLQQQGKLTDALLH 206
+L N E+A +LK L + A +L + G A+
Sbjct: 270 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329
Query: 207 YKEAIRIQ-------------PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP---G 250
++ + I + +D +G + I ++ G
Sbjct: 330 AEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLG 389
Query: 251 FADAHSNLA 259
+ N+
Sbjct: 390 RRHSMENME 398
Score = 68.9 bits (169), Expect = 1e-12
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 10/97 (10%)
Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ----PSFADAYSNMGNTLKEMQDIQG 236
+ L + G + ++ A+++ + + YS +GN + D
Sbjct: 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 65
Query: 237 ALQCYSRAIQI------NPGFADAHSNLASIHKDSGK 267
AL+ + + + G A A NL + K G
Sbjct: 66 ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 102
Score = 46.5 bits (111), Expect = 2e-05
Identities = 7/58 (12%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Query: 214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN----PGFADAHSNLASIHKDSGK 267
+ + G L + D + + + A+Q+ + +S L + +
Sbjct: 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 109 bits (275), Expect = 2e-26
Identities = 53/300 (17%), Positives = 90/300 (30%), Gaps = 80/300 (26%)
Query: 5 AIDTYRRAIELQPNFPD------AYCNLANALKEKGQPNFPDA--YCNLANALKEK---- 52
A++ + + L D A NL N LK G NF +A C + +
Sbjct: 62 ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG--NFDEAIVCCQRHLDISRELNDK 119
Query: 53 -GQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYA 111
G+ L+ +G V G Q R +
Sbjct: 120 VGEARALYN----------------LGNVYHAKGKSFGCPGPQDTGEFPEDVRNAL---- 159
Query: 112 LSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLC------PTHADSLNNLANIKREQGY 165
A + Y L L + NL N G
Sbjct: 160 ---------------------QAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN 198
Query: 166 IEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKLTDALLHYKEAIRI------ 213
+A + + L + EF A+SNL + G+ A +YK+ + +
Sbjct: 199 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 258
Query: 214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN------PGFADAHSNLASIHKDSGK 267
+ A + ++GNT +QD + A+ + + + I G A +L + + G
Sbjct: 259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318
Score = 95.8 bits (239), Expect = 1e-21
Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 44/178 (24%)
Query: 134 EAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVF------P 181
+A E ++ L L A + NL N + G +EA + L++
Sbjct: 61 KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV 120
Query: 182 EFAAAHSNLASVLQQQGK--------------------LTDALLHYKEAIRI------QP 215
A A NL +V +GK L A+ Y+E + + +
Sbjct: 121 GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRA 180
Query: 216 SFADAYSNMGNTLKEMQDIQGALQCYSRAIQI------NPGFADAHSNLASIHKDSGK 267
+ A+ N+GNT + + + A+ + + + I A+SNL + + G+
Sbjct: 181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238
Score = 95.4 bits (238), Expect = 2e-21
Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 16/134 (11%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVF----PEFAAAHSNLASVLQQQGKLTDALL 205
L + G + A++V +A +S L + AL
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 64
Query: 206 HYKEAIRI------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN------PGFAD 253
++ + + Q A A N+GNTLK + + A+ C R + I+ G A
Sbjct: 65 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124
Query: 254 AHSNLASIHKDSGK 267
A NL +++ GK
Sbjct: 125 ALYNLGNVYHAKGK 138
Score = 92.3 bits (230), Expect = 2e-20
Identities = 27/176 (15%), Positives = 50/176 (28%), Gaps = 42/176 (23%)
Query: 134 EAEECYNTALRLC----PTHADSLNNLANIKREQGYIEEATRLYLKALEVF------PEF 183
+ A+++ T + + L N +A + L +
Sbjct: 23 AGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82
Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRI------QPSFADAYSNMGNTLKEM------ 231
A A NL + L+ G +A++ + + I + A A N+GN
Sbjct: 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 142
Query: 232 --------------QDIQGALQCYSRAIQI------NPGFADAHSNLASIHKDSGK 267
+Q A+ Y + + A NL + H G
Sbjct: 143 PGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN 198
Score = 68.4 bits (168), Expect = 1e-12
Identities = 43/255 (16%), Positives = 78/255 (30%), Gaps = 54/255 (21%)
Query: 3 DLAIDTYRRAIELQPNFPD------AYCNLANALKEKGQPNFPDAYCNLANALKEKGQIN 56
D AI +R +++ D A NL N KG+ + ++
Sbjct: 100 DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPED----- 154
Query: 57 VLHKPPYK-----YTRELA----PGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEI 107
+ + Y L+ G+R G + GN +H + G + +
Sbjct: 155 --VRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGN---THYLL---GNFRDA---V 203
Query: 108 FCY--ALS--------PDDGTTFSYIISVLLLI-QVSEAEECYNTALRLC------PTHA 150
+ L + +S + + + + + A E Y L L A
Sbjct: 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263
Query: 151 DSLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKLTDAL 204
S +L N E+A +LK L + E A +L + G A+
Sbjct: 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323
Query: 205 LHYKEAIRIQPSFAD 219
++ + I D
Sbjct: 324 HFAEKHLEISREVGD 338
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 102 bits (257), Expect = 6e-26
Identities = 16/118 (13%), Positives = 35/118 (29%)
Query: 139 YNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG 198
L + L L + + G ++A +++ + A L + Q G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 199 KLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHS 256
AL Y + + + ++ D+ GA + A + +
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124
Score = 90.2 bits (224), Expect = 2e-21
Identities = 16/95 (16%), Positives = 29/95 (30%)
Query: 173 YLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ 232
+ + L Q GK DA ++ + A + +G + +
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 233 DIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ ALQ YS ++ + A H G
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD 101
Score = 78.2 bits (193), Expect = 2e-17
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 3/105 (2%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
+A++ + L A L ++ G E+A + Y + + A
Sbjct: 36 DAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95
Query: 194 LQQQGKLTDALLHYKEAIRI---QPSFADAYSNMGNTLKEMQDIQ 235
Q G L A + A + QP+ + G L+ + +
Sbjct: 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARK 140
Score = 52.8 bits (127), Expect = 1e-08
Identities = 8/66 (12%), Positives = 15/66 (22%), Gaps = 15/66 (22%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
A ++ L + L + G N P + A
Sbjct: 37 AQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96
Query: 50 KEKGQI 55
+ G +
Sbjct: 97 LQLGDL 102
Score = 49.7 bits (119), Expect = 2e-07
Identities = 17/195 (8%), Positives = 35/195 (17%), Gaps = 79/195 (40%)
Query: 8 TYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEK 52
T L + + L + G+ + L +
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65
Query: 53 GQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY-- 110
G E A + Y
Sbjct: 66 GLY------------EQA------------------------------------LQSYSY 77
Query: 111 --ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIE 167
+ ++ + L + + AE + +A L A
Sbjct: 78 GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG------- 130
Query: 168 EATRLYLKALEVFPE 182
L+A+ +
Sbjct: 131 ----AMLEAVTARKD 141
Score = 46.7 bits (111), Expect = 2e-06
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALK 50
+ A+ +Y + N P + A + G + A +A
Sbjct: 69 EQALQSYSYGALMDINEPRFPFHAAECHLQLG--DLDGAESGFYSARA 114
Score = 27.8 bits (62), Expect = 6.7
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANA 29
+D A + A L P A A
Sbjct: 102 LDGAESGFYSARALAAAQPAHEALAARA 129
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 100 bits (252), Expect = 1e-25
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 2/106 (1%)
Query: 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
++ T L + L + + AL H + A+ P+++ A+ +G
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 226 NTLKEMQDIQGALQCYSRAIQINPGFAD--AHSNLASIHKDSGKRG 269
TL+ D GA Q + + D L + +
Sbjct: 61 KTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARED 106
Score = 93.9 bits (234), Expect = 3e-23
Identities = 18/112 (16%), Positives = 31/112 (27%), Gaps = 2/112 (1%)
Query: 132 VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191
+ E L + L E + A AL+ P ++ A L
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 192 SVLQQQGKLTDALLHYKEAIRIQPSFAD--AYSNMGNTLKEMQDIQGALQCY 241
LQ QG A ++ + S D + L+ + +
Sbjct: 61 KTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
Score = 62.0 bits (151), Expect = 6e-12
Identities = 8/66 (12%), Positives = 15/66 (22%), Gaps = 15/66 (22%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
+ + + L E Q P + A+ L L
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 50 KEKGQI 55
+ +G
Sbjct: 64 QGQGDR 69
Score = 56.6 bits (137), Expect = 4e-10
Identities = 16/100 (16%), Positives = 28/100 (28%), Gaps = 3/100 (3%)
Query: 111 ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
A D+ + Q A AL PT++ + L + QG A
Sbjct: 13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA 72
Query: 170 TRLYLKALEVFPEF--AAAHSNLASVLQQQGKLTDALLHY 207
+ + L L L++ + H+
Sbjct: 73 RQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
Score = 48.1 bits (115), Expect = 4e-07
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQP 36
D A+ R A++ P + A+ L L+ +G
Sbjct: 36 DAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR 69
Score = 31.5 bits (72), Expect = 0.25
Identities = 4/43 (9%), Positives = 12/43 (27%), Gaps = 2/43 (4%)
Query: 2 IDLAIDTYRRAIELQPNFPD--AYCNLANALKEKGQPNFPDAY 42
A + + + D L L+ + + + +
Sbjct: 69 RAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHH 111
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 100 bits (252), Expect = 2e-25
Identities = 31/117 (26%), Positives = 50/117 (42%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
A+ L N + + E A Y KA+E+ P A N A+ + G A+
Sbjct: 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQD 68
Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263
+ AI I P+++ AY MG L + A+ Y +A++++P SNL
Sbjct: 69 CERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125
Score = 74.9 bits (185), Expect = 3e-16
Identities = 18/87 (20%), Positives = 34/87 (39%)
Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
A + + A+ Y +AI + P+ A + N ++ + GA+Q
Sbjct: 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQD 68
Query: 241 YSRAIQINPGFADAHSNLASIHKDSGK 267
RAI I+P ++ A+ + K
Sbjct: 69 CERAICIDPAYSKAYGRMGLALSSLNK 95
Score = 53.4 bits (129), Expect = 9e-09
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 213 IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ A+ GN ++++ + A+ Y +AI++NP A N A+ + G
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN 61
Score = 52.2 bits (126), Expect = 2e-08
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 15/65 (23%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
A+ Y +AIEL P +CN A A + G P + AY + AL
Sbjct: 31 AVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90
Query: 50 KEKGQ 54
+
Sbjct: 91 SSLNK 95
Score = 50.3 bits (121), Expect = 9e-08
Identities = 14/66 (21%), Positives = 25/66 (37%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
A + A+ + P ++ + + EA Y KALE+ P+ SNL
Sbjct: 64 GAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
Query: 194 LQQQGK 199
+ +
Sbjct: 124 ELKLRE 129
Score = 43.0 bits (102), Expect = 3e-05
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 15/64 (23%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
A+ RAI + P + AY + AL + P+ NL
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122
Query: 48 ALKE 51
A +
Sbjct: 123 AELK 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 101 bits (255), Expect = 6e-25
Identities = 26/159 (16%), Positives = 58/159 (36%), Gaps = 25/159 (15%)
Query: 134 EAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---- 183
EA + + +L+ + ++R G + A R +L+ E+
Sbjct: 44 EARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103
Query: 184 ---AAAHSNLASVLQQQGKLTDALLHYKEAIRI------QPSFADAYSNMGNTLKEMQDI 234
+A +A+V G L A Y++++ Q + A A+ +G+ ++ +++
Sbjct: 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163
Query: 235 QGALQCYSRAIQI------NPGFADAHSNLASIHKDSGK 267
A Q + RA I + + + L +
Sbjct: 164 LEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
Score = 95.8 bits (239), Expect = 8e-23
Identities = 19/159 (11%), Positives = 41/159 (25%), Gaps = 25/159 (15%)
Query: 134 EAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---- 183
EA + + T + + L + +EA + + +
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 184 --AAAHSNLASVLQQQGKLTDALLHYKEAIRI-------QPSFADAYSNMGNTLKEMQDI 234
A + V + G A + E + + + + D+
Sbjct: 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123
Query: 235 QGALQCYSRAIQI------NPGFADAHSNLASIHKDSGK 267
GA Q Y +++ A A L + +
Sbjct: 124 AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162
Score = 53.8 bits (130), Expect = 2e-08
Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 12/81 (14%)
Query: 131 QVSEAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF- 183
++ A + Y +L A + L ++ +++ + EA + +L+A ++F E
Sbjct: 122 DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181
Query: 184 -----AAAHSNLASVLQQQGK 199
+ L +
Sbjct: 182 DSEAVNELMTRLNGLEHHHHH 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 95.4 bits (238), Expect = 8e-24
Identities = 13/77 (16%), Positives = 28/77 (36%)
Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
PE LA + + AL ++E + P + Y ++G + + A+
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 241 YSRAIQINPGFADAHSN 257
Y++ I++
Sbjct: 64 YAQGIEVAREEGTQKDL 80
Score = 86.9 bits (216), Expect = 6e-21
Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
P + LA + A L+ + +E P++ + +L + ++ + DA+
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 207 YKEAIRIQPSFADAYS--NMGNTLKEMQDI 234
Y + I + + + + + +
Sbjct: 64 YAQGIEVAREEGTQKDLSELQDAKLKAEGL 93
Score = 63.1 bits (154), Expect = 2e-12
Identities = 5/54 (9%), Positives = 19/54 (35%)
Query: 214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
P + + + AL + ++ +P + + +L +++ +
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR 56
Score = 61.9 bits (151), Expect = 4e-12
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 2/79 (2%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS-- 188
S A + + P + + +L + ++A Y + +EV E
Sbjct: 22 NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81
Query: 189 NLASVLQQQGKLTDALLHY 207
L + L H+
Sbjct: 82 ELQDAKLKAEGLEHHHHHH 100
Score = 53.4 bits (129), Expect = 4e-09
Identities = 8/75 (10%), Positives = 19/75 (25%), Gaps = 17/75 (22%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAY--CN 44
A+ + +E P++ Y +L + +
Sbjct: 23 ASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82
Query: 45 LANALKEKGQINVLH 59
L +A + + H
Sbjct: 83 LQDAKLKAEGLEHHH 97
Score = 48.8 bits (117), Expect = 2e-07
Identities = 7/56 (12%), Positives = 14/56 (25%), Gaps = 15/56 (26%)
Query: 16 QPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQIN 56
P P LA + P++ Y +L + + +
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTD 58
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 95.2 bits (237), Expect = 3e-23
Identities = 19/121 (15%), Positives = 38/121 (31%)
Query: 129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS 188
+I + + D + + A +G IEEA +
Sbjct: 15 VIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIM 74
Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248
LA++ Q + + A Y A + + + G ++ A +C+ IQ +
Sbjct: 75 GLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134
Query: 249 P 249
Sbjct: 135 N 135
Score = 79.8 bits (197), Expect = 8e-18
Identities = 10/116 (8%), Positives = 30/116 (25%), Gaps = 3/116 (2%)
Query: 155 NLANIKREQGYIEEATR---LYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAI 211
N+ + + +A + + + A +G++ +A + ++
Sbjct: 4 NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63
Query: 212 RIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
D + + + Q A Y+ A + +
Sbjct: 64 IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA 119
Score = 48.3 bits (115), Expect = 7e-07
Identities = 10/89 (11%), Positives = 16/89 (17%), Gaps = 23/89 (25%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
A +R D LA + K Q N +
Sbjct: 55 AEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114
Query: 50 KEKGQIN--------VLHKPPYKYTRELA 70
V+ + + A
Sbjct: 115 LRLKAPLKAKECFELVIQHSNDEKLKIKA 143
Score = 44.8 bits (106), Expect = 1e-05
Identities = 7/86 (8%), Positives = 23/86 (26%), Gaps = 3/86 (3%)
Query: 105 VEIFCYALS--PDDGTTFSYIISVL-LLIQVSEAEECYNTALRLCPTHADSLNNLANIKR 161
F + + + ++ + Q +A + Y A L + + +
Sbjct: 56 EVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115
Query: 162 EQGYIEEATRLYLKALEVFPEFAAAH 187
+A + ++ +
Sbjct: 116 RLKAPLKAKECFELVIQHSNDEKLKI 141
Score = 44.0 bits (104), Expect = 2e-05
Identities = 7/35 (20%), Positives = 8/35 (22%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPN 37
A D Y A L N + P
Sbjct: 87 QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPL 121
Score = 34.0 bits (78), Expect = 0.053
Identities = 10/62 (16%), Positives = 16/62 (25%), Gaps = 15/62 (24%)
Query: 8 TYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEK 52
T + + + D + A KG+ D LA + K
Sbjct: 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK 83
Query: 53 GQ 54
Q
Sbjct: 84 EQ 85
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 95.0 bits (236), Expect = 4e-23
Identities = 14/131 (10%), Positives = 37/131 (28%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
+ + + L +LA + + G E+A ++ + + L
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
+ Q G+ A+ Y + + L + ++ A A ++
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 251 FADAHSNLASI 261
+ +
Sbjct: 122 XPEFXELSTRV 132
Score = 82.3 bits (203), Expect = 1e-18
Identities = 15/104 (14%), Positives = 31/104 (29%)
Query: 164 GYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN 223
G + E+ + +LA Q G DA ++ + + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 224 MGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+G + M A+ YS ++ + A G+
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE 104
Score = 67.6 bits (165), Expect = 1e-13
Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 3/126 (2%)
Query: 112 LSPDDGTTFSYIISVLLLIQ--VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
+S D Y ++ +A + L + L ++ G + A
Sbjct: 16 ISSDTLEQL-YSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 74
Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK 229
Y + + A L Q G+L +A A + + +
Sbjct: 75 IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134
Query: 230 EMQDIQ 235
++ I+
Sbjct: 135 MLEAIK 140
Score = 44.5 bits (105), Expect = 2e-05
Identities = 9/67 (13%), Positives = 17/67 (25%), Gaps = 15/67 (22%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
A ++ L + L + GQ P + A L
Sbjct: 40 AHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99
Query: 50 KEKGQIN 56
+ G++
Sbjct: 100 LQXGELA 106
Score = 44.1 bits (104), Expect = 2e-05
Identities = 22/198 (11%), Positives = 42/198 (21%), Gaps = 79/198 (39%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKG---------------QPNFPDAYCNLANAL 49
T E+ + + +LA + G + L
Sbjct: 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACR 65
Query: 50 KEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFC 109
+ GQ +LA I
Sbjct: 66 QAMGQY------------DLA------------------------------------IHS 77
Query: 110 Y----ALSPDDGTTFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQG 164
Y + + + LL +++EAE A L + +
Sbjct: 78 YSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS--- 134
Query: 165 YIEEATRLYLKALEVFPE 182
L+A+++ E
Sbjct: 135 --------MLEAIKLKKE 144
Score = 39.5 bits (92), Expect = 8e-04
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANAL 49
DLAI +Y + P + A L + G+ ++ LA L
Sbjct: 72 DLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 94.9 bits (237), Expect = 6e-23
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKLTDA 203
+ NL N G +A + + L + EF A+SNL + G+ A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 204 LLHYKEAIRI------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN------PGF 251
+YK+ + + + A + ++GNT +QD + A+ + + + I G
Sbjct: 69 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128
Query: 252 ADAHSNLASIHKDSGK 267
A +L + + G
Sbjct: 129 GRACWSLGNAYTALGN 144
Score = 87.6 bits (218), Expect = 2e-20
Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 18/132 (13%)
Query: 134 EAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVF------P 181
+A + L + + +NL N G E A+ Y K L +
Sbjct: 27 DAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86
Query: 182 EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ------PSFADAYSNMGNTLKEMQDIQ 235
A + +L + A+ ++ + + I A ++GN + +
Sbjct: 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 146
Query: 236 GALQCYSRAIQI 247
A+ + ++I
Sbjct: 147 QAMHFAEKHLEI 158
Score = 44.8 bits (107), Expect = 1e-05
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI------NPGFADAHSNLASIHKDSGK 267
+ + A+ N+GNT + + + A+ + + + I A+SNL + + G+
Sbjct: 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE 64
Score = 39.8 bits (94), Expect = 6e-04
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 134 EAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVF 180
+A + + L + + +L N G ++A K LE+
Sbjct: 107 KAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 98.0 bits (245), Expect = 7e-23
Identities = 43/169 (25%), Positives = 63/169 (37%), Gaps = 32/169 (18%)
Query: 131 QVSEAEECYNTALRLC-----PTH---ADSLNNLANIKREQGYIEEATRLYLKALEVF-- 180
A AL H A LN LA + R+Q +EA L AL +
Sbjct: 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK 75
Query: 181 ------PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ--------PSFADAYSNMGN 226
P AA +NLA + ++GK +A K A+ I+ P A +N+
Sbjct: 76 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL 135
Query: 227 TLKEMQDIQGALQCYSRAIQI--------NPGFADAHSNLASIHKDSGK 267
+ + Y RA++I +P A +NLAS + GK
Sbjct: 136 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK 184
Score = 86.8 bits (216), Expect = 5e-19
Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 23/137 (16%)
Query: 134 EAEECYNTALRLC-----PTH---ADSLNNLANIKREQGYIEEATRLYLKALEVF----- 180
E E Y AL + P A + NNLA+ +QG ++A LY + L
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204
Query: 181 ----PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ------PSFADAYSNMGNTLKE 230
+ + + + K D+ + + + P+ ++G +
Sbjct: 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRR 264
Query: 231 MQDIQGALQCYSRAIQI 247
++ A A +
Sbjct: 265 QGKLEAAHTLEDCASRN 281
Score = 81.0 bits (201), Expect = 4e-17
Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 24/140 (17%)
Query: 152 SLNNLANIKREQGYIEEATRLYLKALEVF--------PEFAAAHSNLASVLQQQGKLTDA 203
S ++ + A L +ALE P+ A + LA V + Q K +A
Sbjct: 3 SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEA 62
Query: 204 LLHYKEAIRIQ--------PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI-------- 247
+A+ I+ P+ A +N+ + + A RA++I
Sbjct: 63 AHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122
Query: 248 NPGFADAHSNLASIHKDSGK 267
+P A +NLA + ++ GK
Sbjct: 123 HPDVAKQLNNLALLCQNQGK 142
Score = 66.0 bits (162), Expect = 5e-12
Identities = 35/267 (13%), Positives = 66/267 (24%), Gaps = 103/267 (38%)
Query: 5 AIDTYRRAIELQ-----PNFPD---AYCNLANALKEKGQ--------------------P 36
A A+ ++ + P NLA ++G+
Sbjct: 62 AAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121
Query: 37 NFPD---AYCNLANALKEKGQINVLHKPPYK-----YTRELAPGNRIRIGYVSSDFG-NH 87
PD NLA + +G+ + Y R L I + G +
Sbjct: 122 FHPDVAKQLNNLALLCQNQGK--------AEEVEYYYRRALE----IYA----TRLGPDD 165
Query: 88 P---TSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQ--VSEAEECYNTA 142
P + +N ++ L Q +AE Y
Sbjct: 166 PNVAKT--------KNN----------------------LASCYLKQGKYQDAETLYKEI 195
Query: 143 LRLC------PTH---ADSLNNLANIKREQGYIEEATRLYLKAL--EVF----PEFAAAH 187
L + + + + ++ + P
Sbjct: 196 LTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTL 255
Query: 188 SNLASVLQQQGKLTDALLHYKEAIRIQ 214
+L ++ ++QGKL A A R +
Sbjct: 256 RSLGALYRRQGKLEAAHTLEDCASRNR 282
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 95.6 bits (238), Expect = 1e-22
Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 4/116 (3%)
Query: 149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK 208
A SL N + ++ + A + + N+ + +T+A +
Sbjct: 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFT 61
Query: 209 EAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAI-QINPGFADAHSNLASIHK 263
+I A AY G + + A++ A+ Q+ + L K
Sbjct: 62 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK 117
Score = 95.2 bits (237), Expect = 2e-22
Identities = 18/142 (12%), Positives = 48/142 (33%), Gaps = 19/142 (13%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
A + ++ + H+ N+ + + EA + + +++ A A+ +
Sbjct: 24 GALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80
Query: 194 LQQQGKLTDALLHYKEAIR-IQPSFADAYS---------------NMGNTLKEMQDIQGA 237
Q K A+ KEA+ ++ + Y N+ + ++ + A
Sbjct: 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140
Query: 238 LQCYSRAIQINPGFADAHSNLA 259
+ + A + + + A
Sbjct: 141 EEQLALATSMKSEPRHSKIDKA 162
Score = 80.9 bits (200), Expect = 1e-17
Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 184 AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSR 243
A + N + + AL + +Q + N+G ++++ A + ++R
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTR 62
Query: 244 AIQINPGFADAHSNLASIHKDSGK 267
+I + A A+ ++ + K
Sbjct: 63 SINRDKHLAVAYFQRGMLYYQTEK 86
Score = 49.7 bits (119), Expect = 6e-07
Identities = 9/67 (13%), Positives = 14/67 (20%), Gaps = 16/67 (23%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ----------------PNFPDAYCNLA 46
A + R+I + AY + + N Y L
Sbjct: 54 TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILG 113
Query: 47 NALKEKG 53
K
Sbjct: 114 LQFKLFA 120
Score = 46.6 bits (111), Expect = 8e-06
Identities = 5/67 (7%), Positives = 11/67 (16%), Gaps = 18/67 (26%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
A+D + N+ + AY
Sbjct: 23 KGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM 79
Query: 48 ALKEKGQ 54
+ +
Sbjct: 80 LYYQTEK 86
Score = 45.5 bits (108), Expect = 2e-05
Identities = 20/214 (9%), Positives = 47/214 (21%), Gaps = 67/214 (31%)
Query: 22 AYCNLANALKEKGQ------------PNFPDAYCNLANALKEKGQINVLHKPPYKYTR-- 67
+ N +K N+ + + +TR
Sbjct: 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMT---EAEKAFTRSI 64
Query: 68 ELAPG------NRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFS 121
R G + + ++ AL G
Sbjct: 65 NRDKHLAVAYFQR---GMLYYQTEKY--------------DLAIKDLKEALIQLRG---- 103
Query: 122 YIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFP 181
++ + L+ + L N+A + ++ ++A A +
Sbjct: 104 -----------NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152
Query: 182 EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP 215
E + K+ A+ + +P
Sbjct: 153 E------------PRHSKIDKAMECVWKQKLYEP 174
Score = 40.1 bits (94), Expect = 0.001
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 3 DLAIDTYRRAI-ELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQIN 56
DLAI + A+ +L+ N Y L K + N+A +K +
Sbjct: 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA----CEVLYNIAFMYAKKEEWK 138
Score = 31.6 bits (72), Expect = 0.54
Identities = 9/58 (15%), Positives = 24/58 (41%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHK 60
+ ID ++ + + N+A +K + + LA ++K + + + + K
Sbjct: 104 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 161
Score = 30.1 bits (68), Expect = 1.6
Identities = 9/70 (12%), Positives = 19/70 (27%), Gaps = 11/70 (15%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKP 61
A + A ++ + + A K + P + L +P
Sbjct: 137 WKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVI-----------PVGRLFRP 185
Query: 62 PYKYTRELAP 71
+ +LA
Sbjct: 186 NERQVAQLAK 195
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 98.0 bits (245), Expect = 1e-22
Identities = 42/166 (25%), Positives = 62/166 (37%), Gaps = 32/166 (19%)
Query: 134 EAEECYNTALRLC-----PTH---ADSLNNLANIKREQGYIEEATRLYLKALEVF----- 180
A AL H A LN LA + R+Q ++A L AL +
Sbjct: 45 VAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104
Query: 181 ---PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ--------PSFADAYSNMGNTLK 229
P AA +NLA + ++GK +A K A+ I+ P A +N+ +
Sbjct: 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ 164
Query: 230 EMQDIQGALQCYSRAIQIN--------PGFADAHSNLASIHKDSGK 267
+ Y RA++I P A +NLAS + GK
Sbjct: 165 NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK 210
Score = 94.9 bits (237), Expect = 2e-21
Identities = 38/165 (23%), Positives = 55/165 (33%), Gaps = 31/165 (18%)
Query: 134 EAEECYNTALRLC-----PTH---ADSLNNLANIKREQGYIEEATRLYLKALEVF----- 180
EAE AL + H A LNNLA + + QG EE Y +ALE++
Sbjct: 129 EAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188
Query: 181 ---PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ---------PSFADAYSNMGNTL 228
P A +NLAS +QGK A YKE + + +
Sbjct: 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEERE 248
Query: 229 KEMQDIQGALQCYSRAIQIN------PGFADAHSNLASIHKDSGK 267
+ + P NL ++++ GK
Sbjct: 249 ECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK 293
Score = 90.7 bits (226), Expect = 4e-20
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 24/145 (16%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVF--------PEFAAAHSNLASVLQQQG 198
P +L+NL QG E A L +ALE P+ A + LA V + Q
Sbjct: 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN 83
Query: 199 KLTDALLHYKEAIRIQ--------PSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI--- 247
K DA +A+ I+ P+ A +N+ + + A RA++I
Sbjct: 84 KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143
Query: 248 -----NPGFADAHSNLASIHKDSGK 267
+P A +NLA + ++ GK
Sbjct: 144 VLGKDHPDVAKQLNNLALLCQNQGK 168
Score = 65.3 bits (160), Expect = 1e-11
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 15/96 (15%)
Query: 134 EAEECYNTALRLC---------PTHADSLNNLANIKREQGYIEEATRLYLKAL--EVF-- 180
+AE Y L + + + +G ++ T +
Sbjct: 213 QAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272
Query: 181 --PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ 214
P NL ++ ++QGK A + A+R +
Sbjct: 273 DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 92.3 bits (230), Expect = 2e-22
Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
A + +L N +Q E+A Y KA+E+ P ++N A+V ++ K + +
Sbjct: 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64
Query: 207 YKEAIRIQPS-------FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
++A+ + A A S GN ++ D+ A+Q + R++ + +
Sbjct: 65 CEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123
Query: 260 SIHK 263
+ K
Sbjct: 124 ELEK 127
Score = 77.7 bits (192), Expect = 2e-17
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
+ A A +L + +Q A +HY +AI + PS Y+N E + +Q
Sbjct: 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64
Query: 241 YSRAIQINP-------GFADAHSNLASIHKDSGK 267
+A+++ A A S + +
Sbjct: 65 CEKAVEVGRETRADYKLIAKAMSRAGNAFQKQND 98
Score = 59.6 bits (145), Expect = 5e-11
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
A A ++GN + +D + A Y +AI+++P ++N A+++ + K
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK 57
Score = 51.9 bits (125), Expect = 2e-08
Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 22/74 (29%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ----------------------PNFPD 40
+ A Y +AIEL P+ Y N A E+ +
Sbjct: 25 EKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84
Query: 41 AYCNLANALKEKGQ 54
A NA +++
Sbjct: 85 AMSRAGNAFQKQND 98
Score = 38.0 bits (89), Expect = 0.002
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 15/56 (26%)
Query: 14 ELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANALKEKGQ 54
+ A +L NA ++ P+ Y N A E+ +
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK 57
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 89.4 bits (222), Expect = 2e-21
Identities = 13/105 (12%), Positives = 32/105 (30%)
Query: 149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK 208
+ ++ + + EA + + PE A +L + K A++
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75
Query: 209 EAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253
A + P ++ + + + AL + P +
Sbjct: 76 HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
Score = 86.4 bits (214), Expect = 2e-20
Identities = 15/82 (18%), Positives = 33/82 (40%)
Query: 186 AHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAI 245
+ + L +A L ++ + +P +A+ ++G T E + A+ + A
Sbjct: 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78
Query: 246 QINPGFADAHSNLASIHKDSGK 267
++P H+ LA H +
Sbjct: 79 MLDPKDIAVHAALAVSHTNEHN 100
Score = 79.8 bits (197), Expect = 4e-18
Identities = 16/89 (17%), Positives = 31/89 (34%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
++EA + + P ++ +L + E A A + P+ A H+ L
Sbjct: 32 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 91
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFAD 219
A + AL + + QP +
Sbjct: 92 AVSHTNEHNANAALASLRAWLLSQPQYEQ 120
Score = 50.9 bits (122), Expect = 5e-08
Identities = 9/70 (12%), Positives = 20/70 (28%), Gaps = 15/70 (21%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
+ A + + +P +A+ +L E + P + LA
Sbjct: 33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 92
Query: 47 NALKEKGQIN 56
+ + N
Sbjct: 93 VSHTNEHNAN 102
Score = 47.4 bits (113), Expect = 8e-07
Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 217 FADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK-----RGFF 271
+ + G ++ ++ ++ A + Q P +A +L ++ K
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75
Query: 272 IRTDLNSAYFWLLLLDAHSNLASIHKD 298
L+ + H+ LA H +
Sbjct: 76 HARMLDPKD-----IAVHAALAVSHTN 97
Score = 46.7 bits (111), Expect = 1e-06
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALK 50
LAI A L P + LA + + N A +L L
Sbjct: 68 GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN--AALASLRAWLL 113
Score = 29.0 bits (65), Expect = 1.8
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 3 DLAIDTYRRAIELQPNFPD 21
+ A+ + R + QP +
Sbjct: 102 NAALASLRAWLLSQPQYEQ 120
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 91.8 bits (228), Expect = 4e-20
Identities = 24/159 (15%), Positives = 47/159 (29%), Gaps = 25/159 (15%)
Query: 134 EAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVF------- 180
A + + A A+ ++ + +A E++
Sbjct: 121 SAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180
Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI------QPSFADAYSNMGNTLKEMQDI 234
HS A+ + DA+ H+++A + N+G
Sbjct: 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240
Query: 235 QGALQCYSRAIQIN------PGFADAHSNLASIHKDSGK 267
+ A+ + RAI + P A+ + IH GK
Sbjct: 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK 279
Score = 69.5 bits (170), Expect = 8e-13
Identities = 31/270 (11%), Positives = 75/270 (27%), Gaps = 44/270 (16%)
Query: 3 DLAIDTYRRAIELQPNFPD------AYCNLANALKEKGQPNFPDAYCNLANALKEKGQIN 56
AI +++A D + ++ + Q F Y A + ++
Sbjct: 120 LSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE---- 175
Query: 57 VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTS--HLMQS---VPGMHNKSRVEIFCYA 111
Y L D + + H ++ + Y
Sbjct: 176 -----HEAYNIRLLQ-CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYN 229
Query: 112 LSPDDGTTFSYIISVLLLIQVSEAEECYNTALRLC------PTHADSLNNLANIKREQGY 165
+ G + Q +A + A+ + P+ + + I + G
Sbjct: 230 I----GLCKNS------QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK 279
Query: 166 IEEATRLYLKALEVFPEF----AAAHSNLASVLQQQGKLTDALLHYKEAIRIQ---PSFA 218
I++A + K + + + L G +A+ + + + +
Sbjct: 280 IDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLE 339
Query: 219 DAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248
D ++ E ++ Q A + + Q+
Sbjct: 340 DFAIDVAKYYHERKNFQKASAYFLKVEQVR 369
Score = 57.9 bits (140), Expect = 4e-09
Identities = 18/138 (13%), Positives = 41/138 (29%), Gaps = 19/138 (13%)
Query: 149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKLTD 202
H L L +++ + + L ++ + Q +
Sbjct: 62 HNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLS 121
Query: 203 ALLHYKEAIRI------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI-------NP 249
A+ +K+A + A+ + M + M+ ++ +A +I N
Sbjct: 122 AIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181
Query: 250 GFADAHSNLASIHKDSGK 267
HS A+ D +
Sbjct: 182 RLLQCHSLFATNFLDLKQ 199
Score = 39.4 bits (92), Expect = 0.003
Identities = 12/134 (8%), Positives = 35/134 (26%), Gaps = 29/134 (21%)
Query: 163 QGYIEEATRLYLKALEVFPE-----------------FAAAHSNLASVLQQQGKLTDALL 205
+ I +A L + + + L + + + + L
Sbjct: 25 RFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLS 84
Query: 206 HYKEAIRIQ----PSFADAYSN--MGNTLKEMQDIQGALQCYSRAIQI------NPGFAD 253
I + + Y N G + ++ A++ + +A A+
Sbjct: 85 DLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAE 144
Query: 254 AHSNLASIHKDSGK 267
++ + +
Sbjct: 145 FFFKMSESYYYMKQ 158
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 85.4 bits (212), Expect = 5e-20
Identities = 27/128 (21%), Positives = 57/128 (44%)
Query: 136 EECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQ 195
++ + P A + N N ++G +A + Y +A++ P+ A +SN A+
Sbjct: 2 GHHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT 61
Query: 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH 255
+ + AL +E I+++P+F Y+ L+ M+D A+ Y +A+ ++ +A
Sbjct: 62 KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAA 121
Query: 256 SNLASIHK 263
Sbjct: 122 DGYQRCMM 129
Score = 62.6 bits (153), Expect = 6e-12
Identities = 24/95 (25%), Positives = 40/95 (42%)
Query: 173 YLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ 232
+ + P+ A N + Q+G A+ HY EAI+ P A YSN ++
Sbjct: 5 HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL 64
Query: 233 DIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ Q AL+ IQ+ P F ++ A+ +
Sbjct: 65 EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKD 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 15/65 (23%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
A+ Y AI+ P Y N A + + P F Y A AL
Sbjct: 35 AMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94
Query: 50 KEKGQ 54
+
Sbjct: 95 EAMKD 99
Score = 41.1 bits (97), Expect = 2e-04
Identities = 12/64 (18%), Positives = 20/64 (31%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
A + ++L PT A +A +Y KAL++ A
Sbjct: 68 LALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 127
Query: 194 LQQQ 197
+ Q
Sbjct: 128 MMAQ 131
Score = 35.7 bits (83), Expect = 0.014
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALK 50
LA+ I+L+P F Y A AL+ ++ A AL
Sbjct: 67 QLALKDCEECIQLEPTFIKGYTRKAAALEAMK--DYTKAMDVYQKALD 112
Score = 29.1 bits (66), Expect = 2.1
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 133 SEAEECYNTALRLCPTHADSLNNLANIKREQ 163
++A + Y AL L + ++ + Q
Sbjct: 101 TKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131
Score = 28.0 bits (63), Expect = 4.8
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEK 33
A+D Y++A++L + +A + +
Sbjct: 101 TKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 85.7 bits (212), Expect = 1e-19
Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 3/134 (2%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
+ +R P +++ L Q + Y +AL++ E A ++ L
Sbjct: 25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAAL 84
Query: 191 ASVLQQQGK---LTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI 247
A+VL Q +A+ + + A + + + A++ + + + +
Sbjct: 85 ATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144
Query: 248 NPGFADAHSNLASI 261
N + + SI
Sbjct: 145 NSPRINRTQLVESI 158
Score = 66.4 bits (162), Expect = 6e-13
Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 7/132 (5%)
Query: 139 YNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG 198
+ D L+ A Q E + + P+ + + L Q
Sbjct: 3 WQAVRAEYQRQRDPLHQFA----SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQN 58
Query: 199 KLTDALLHYKEAIRIQPSFADAYSNMGNTL---KEMQDIQGALQCYSRAIQINPGFADAH 255
+++LL Y++A++++ A+ Y+ + L +A+ ++ A
Sbjct: 59 DYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITAL 118
Query: 256 SNLASIHKDSGK 267
LAS
Sbjct: 119 MLLASDAFMQAN 130
Score = 58.0 bits (140), Expect = 6e-10
Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 181 PEFAAAHSNLASVLQQ------QGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDI 234
P++ A + Q L ++ IR P ++ ++ +G D
Sbjct: 1 PKWQAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDY 60
Query: 235 QGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFF 271
+L Y +A+Q+ A+ ++ LA++ +
Sbjct: 61 SNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97
Score = 42.5 bits (100), Expect = 1e-04
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 18/70 (25%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ------------------PNFPDAYCN 44
++ YR+A++L+ + Y LA L + N A
Sbjct: 61 SNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALML 120
Query: 45 LANALKEKGQ 54
LA+ +
Sbjct: 121 LASDAFMQAN 130
Score = 36.8 bits (85), Expect = 0.008
Identities = 8/89 (8%), Positives = 20/89 (22%), Gaps = 17/89 (19%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
+ + + I P + + L + + Y LA
Sbjct: 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALA 85
Query: 47 NALKEKGQINVLHKPPYKYTR--ELAPGN 73
L + ++ + + L
Sbjct: 86 TVLYYQASQHMTAQTRAMIDKALALDSNE 114
Score = 35.6 bits (82), Expect = 0.019
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDA 41
+A+ L N A LA+ + + A
Sbjct: 100 TRAMIDKALALDSNEITALMLLASDAFMQAN--YAQA 134
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 83.2 bits (206), Expect = 2e-19
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFAD-AYSNMGNTLKEMQDIQGALQCYSRAIQI 247
L QG + +AL +E ++ +P D AY MGN +++ D Q AL Y AI++
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 248 NPGFADAHSN 257
NP +
Sbjct: 65 NPDSPALQAR 74
Score = 65.8 bits (161), Expect = 1e-13
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 9/102 (8%)
Query: 155 NLANIKREQGYIEEATRLYLKALEVFPEFAA-AHSNLASVLQQQGKLTDALLHYKEAIRI 213
QG IE A + + L+ P A+ + + ++ G AL +Y+ AI +
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH 255
P + + + L Y++ + H
Sbjct: 65 NPDSPALQAR--------KMVMDILNFYNKDMYNQLEHHHHH 98
Score = 56.2 bits (136), Expect = 3e-10
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 9/92 (9%)
Query: 131 QVSEAEECYNTALRLCPTHADSL-NNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSN 189
+ A + L+ P D + N R+ G ++A Y A+E+ P+ A +
Sbjct: 15 DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA- 73
Query: 190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAY 221
+ + D L Y + + Q +
Sbjct: 74 -------RKMVMDILNFYNKDMYNQLEHHHHH 98
Score = 44.7 bits (106), Expect = 4e-06
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 18/67 (26%)
Query: 2 IDLAIDTYRRAIELQPNFPD-AYCNLANALKEKGQ---------------PNFPD--AYC 43
I+ A+ ++ +P D AY + NA ++ G P+ P A
Sbjct: 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARK 75
Query: 44 NLANALK 50
+ + L
Sbjct: 76 MVMDILN 82
Score = 31.2 bits (71), Expect = 0.27
Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 16/47 (34%)
Query: 25 NLANALKEKGQ---------------PNFPD-AYCNLANALKEKGQI 55
L +G P D AY + NA ++ G
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDW 51
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 89.5 bits (222), Expect = 2e-19
Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 24/158 (15%)
Query: 134 EAEECYNTALRLCPT------HADSLNNLANIKREQGYIEEATRLYLKALEVFPEF---- 183
EA Y A + P A+ +A + L+AL+++
Sbjct: 119 EAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178
Query: 184 ---AAAHSNLASVLQQQGKLTDALLHYKEAIRI------QPSFADAYSNMGNTLKEMQDI 234
+ +A AL H + A+ + A + N+ N+ D
Sbjct: 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238
Query: 235 QGALQCYSRAIQIN-----PGFADAHSNLASIHKDSGK 267
Q A++ + +A +++ L+ +G+
Sbjct: 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ 276
Score = 79.9 bits (197), Expect = 4e-16
Identities = 40/289 (13%), Positives = 73/289 (25%), Gaps = 79/289 (27%)
Query: 3 DLAIDTYRRAIELQPNFPD------AYCNLANALKEKGQPNFPDAYCNLANALKEKGQIN 56
AI YR A + P D + +A A Q + + A + +
Sbjct: 118 VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH--- 174
Query: 57 VLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDD 116
Y+ + I DF ++
Sbjct: 175 ------PLYSIRTI-QSLFVIAGNYDDFKHY----------------------------- 198
Query: 117 GTTFSYIISVLLLIQVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEAT 170
+A AL L A SL N+AN G + A
Sbjct: 199 ----------------DKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV 242
Query: 171 RLYLKALEVFPE-----FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD-AYSNM 224
+ KA +V E L+ L + G+ A +E + + + Y +
Sbjct: 243 EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302
Query: 225 GNTLKEMQDIQGALQCYSRAIQI------NPGFADAHSNLASIHKDSGK 267
L+ + + + + + A++ + S
Sbjct: 303 FLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCH 351
Score = 58.7 bits (142), Expect = 3e-09
Identities = 17/171 (9%), Positives = 42/171 (24%), Gaps = 34/171 (19%)
Query: 131 QVSEAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF- 183
V +AE + + + + E + Y V
Sbjct: 27 SVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86
Query: 184 --------------AAAHSNLASVLQQQGKLTDALLHYKEAIRI------QPSFADAYSN 223
+ Q + +A+ +Y+EA + A+ +
Sbjct: 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFK 146
Query: 224 MGNTLKEMQDIQGALQCYSRAIQI-------NPGFADAHSNLASIHKDSGK 267
+ M+ ++ +A+ I + + +A + D
Sbjct: 147 VAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKH 197
Score = 42.9 bits (101), Expect = 3e-04
Identities = 17/145 (11%), Positives = 40/145 (27%), Gaps = 28/145 (19%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVF------PEFAAAHSNLASVLQ------QQ 197
+N + R Q + +A L + + + +S + Q +
Sbjct: 13 GVKINEWYKMIR-QFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEP 71
Query: 198 GKLTDALLHYKEAIRIQPSFADAYSNM---------GNTLKEMQDIQGALQCYSRAIQIN 248
GK E + + + + G + ++ A+ Y A +
Sbjct: 72 GKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKEL 131
Query: 249 ------PGFADAHSNLASIHKDSGK 267
A+ H +A + +
Sbjct: 132 PFVSDDIEKAEFHFKVAEAYYHMKQ 156
Score = 33.6 bits (77), Expect = 0.22
Identities = 24/209 (11%), Positives = 49/209 (23%), Gaps = 74/209 (35%)
Query: 3 DLAIDTYRRAIELQPNFPD------AYCNLANALKEKGQ--------------------P 36
D A+ A+EL + + + N+AN+ G
Sbjct: 199 DKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258
Query: 37 NFPDAYCNLANALKEKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSV 96
P L+ L + GQ +
Sbjct: 259 LLPKVLFGLSWTLCKAGQTQKAFQ------------------------------------ 282
Query: 97 PGMHNKSRVEIFCYALSPDDGTTFSYIISVLLLIQVSEAEECYNTAL------RLCPTHA 150
+ ++ F ++ + + + + E + L L
Sbjct: 283 --FIEEG-LDHITARSHKFYKELFLFLQA---VYKETVDERKIHDLLSYFEKKNLHAYIE 336
Query: 151 DSLNNLANIKREQGYIEEATRLYLKALEV 179
+ A + + E+A Y K L+
Sbjct: 337 ACARSAAAVFESSCHFEQAAAFYRKVLKA 365
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 81.7 bits (202), Expect = 3e-18
Identities = 25/105 (23%), Positives = 44/105 (41%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
+D L + N + +A LY +AL + P SN A+ G+ A +
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADA 254
A + P ++ A+S +G +M D +GA + Y + I+
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115
Score = 60.1 bits (146), Expect = 8e-11
Identities = 14/72 (19%), Positives = 27/72 (37%)
Query: 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH 255
+ + + A+ Y +A+ I P+ SN + A + A ++P ++ A
Sbjct: 23 ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAW 82
Query: 256 SNLASIHKDSGK 267
S L D
Sbjct: 83 SRLGLARFDMAD 94
Score = 44.7 bits (106), Expect = 1e-05
Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 15/65 (23%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
AID Y +A+ + P P N A A GQ P + A+ L A
Sbjct: 30 AIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89
Query: 50 KEKGQ 54
+
Sbjct: 90 FDMAD 94
Score = 41.6 bits (98), Expect = 2e-04
Identities = 13/107 (12%), Positives = 30/107 (28%), Gaps = 9/107 (8%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH--SNLA 191
+A E A + P ++ + + L + + + A Y K +E + L
Sbjct: 63 KAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122
Query: 192 SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGAL 238
+ ++ + D + M D+
Sbjct: 123 TTKRKIEE-------ANRGAEPPADDVDDAAGASRGAGGMPDLSSLA 162
Score = 41.3 bits (97), Expect = 2e-04
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
+D + GN ++ A+ Y++A+ I P SN A
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRA 52
Score = 35.5 bits (82), Expect = 0.024
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALK 50
+ A + A + P + A+ L A + ++ A ++
Sbjct: 62 EKAAEDAELATVVDPKYSKAWSRLGLARFDMA--DYKGAKEAYEKGIE 107
Score = 27.8 bits (62), Expect = 8.1
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 5 AIDTYRRAIELQPNFPDAYC--NLANALKE 32
A + Y + IE + N L ++
Sbjct: 98 AKEAYEKGIEAEGNGGSDAMKRGLETTKRK 127
Score = 27.8 bits (62), Expect = 8.2
Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 5/62 (8%)
Query: 133 SEAEECYNTALRLCPTHADS--LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
A+E Y + L KR+ IEEA R + + A A
Sbjct: 96 KGAKEAYEKGIEAEGNGGSDAMKRGLETTKRK---IEEANRGAEPPADDVDDAAGASRGA 152
Query: 191 AS 192
Sbjct: 153 GG 154
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 78.9 bits (195), Expect = 1e-17
Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
A L N ++ + A + Y KA E+ P +N A+V ++G ++
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 210 AIRIQP-------SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
AI + A AY+ +GN+ + + + A+ Y++++ +
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
Score = 61.6 bits (150), Expect = 1e-11
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 182 EFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCY 241
+ A L + ++ AL HY +A + P+ +N E D +
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 242 SRAIQINPG-------FADAHSNLASIHKDSGK 267
+AI++ A A++ + + + K
Sbjct: 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEK 94
Score = 47.7 bits (114), Expect = 8e-07
Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 22/74 (29%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ----------------------PNFPD 40
D A+ Y +A EL P N A EKG
Sbjct: 21 DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80
Query: 41 AYCNLANALKEKGQ 54
AY + N+ ++ +
Sbjct: 81 AYARIGNSYFKEEK 94
Score = 27.7 bits (62), Expect = 6.6
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEK 33
AI Y +++ PD A K
Sbjct: 96 KDAIHFYNKSLAEHRT-PDVLKKCQQAEKIL 125
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 82.6 bits (204), Expect = 2e-17
Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 20/142 (14%)
Query: 131 QVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEVFPEF- 183
++ EA + A + + A +L+ + E + +A LY +A VF
Sbjct: 91 RMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM-EPLDLSKAVHLYQQAAAVFENEE 149
Query: 184 -----AAAHSNLASVLQQQGKLTDALLHYKEAIRI------QPSFADAYSNMGNTLKEMQ 232
A + +L +Q K +A ++ + P+
Sbjct: 150 RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA 209
Query: 233 DIQGALQCYSRAIQINPGFADA 254
D A +C + I PGF+ +
Sbjct: 210 DYVAAQKCVRESYSI-PGFSGS 230
Score = 82.6 bits (204), Expect = 2e-17
Identities = 21/157 (13%), Positives = 45/157 (28%), Gaps = 23/157 (14%)
Query: 134 EAEECYNTALRLCPTH------ADSLNNLANIKREQGYIEEATRLYLKALEVF-----PE 182
+A++ Y + A + + ++ + EA + KA ++ P+
Sbjct: 54 QAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD 113
Query: 183 FAAAHSNLASVLQQQGKLTDALLHYKEAIRIQ------PSFADAYSNMGNTLKEMQDIQG 236
AA + A L + L+ A+ Y++A + A+ L Q
Sbjct: 114 TAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDE 173
Query: 237 ALQCYSRAIQIN------PGFADAHSNLASIHKDSGK 267
A + + P +
Sbjct: 174 AAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD 210
Score = 76.1 bits (187), Expect = 3e-15
Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 28/165 (16%)
Query: 131 QVSEAEECYNTA--------LRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEV 179
++SEA E A ++ P + A A + +E+A YL+ E
Sbjct: 6 KISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEA 65
Query: 180 FPEF------AAAHSNLASVLQQQGKLTDALLHYKEAIRI-----QPSFADAYSNMGNTL 228
A A +L+ ++ +A+ + ++A + P A + L
Sbjct: 66 HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL 125
Query: 229 KEMQDIQGALQCYSRAIQINPGF------ADAHSNLASIHKDSGK 267
E D+ A+ Y +A + A+ + + K
Sbjct: 126 MEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK 170
Score = 59.9 bits (145), Expect = 7e-10
Identities = 27/231 (11%), Positives = 58/231 (25%), Gaps = 66/231 (28%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPP 62
+ A D Y + E N + A A + LK+ ++ +
Sbjct: 53 EQAKDAYLQEAEAHANNRS-LFHAAKA------------FEQAGMMLKDLQRMPEAVQ-- 97
Query: 63 YKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDD-GTTFS 121
+ + ++ +PD
Sbjct: 98 -------------------------------------YIEKASVMYVENGTPDTAAMALD 120
Query: 122 YIISVLLLIQVSEAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLK 175
++ + +S+A Y A + A+ + + + Q +EA K
Sbjct: 121 RAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180
Query: 176 ALEVF------PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA 220
++ P V + A +E+ I P F+ +
Sbjct: 181 EKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI-PGFSGS 230
Score = 59.1 bits (143), Expect = 1e-09
Identities = 21/125 (16%), Positives = 39/125 (31%), Gaps = 23/125 (18%)
Query: 163 QGYIEEATRLYLKALEV-----------FPEFAAAHSNLASVLQQQGKLTDALLHYKEAI 211
I EA KA + + A+ ++ A + +L A Y +
Sbjct: 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEA 63
Query: 212 RIQPSF------ADAYSNMGNTLKEMQDIQGALQCYSRAIQI------NPGFADAHSNLA 259
+ A A+ G LK++Q + A+Q +A + A A
Sbjct: 64 EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123
Query: 260 SIHKD 264
+ +
Sbjct: 124 KLMEP 128
Score = 49.1 bits (117), Expect = 2e-06
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 17/89 (19%)
Query: 196 QQGKLTDALLHYKEA--------IRIQPSF---ADAYSNMGNTLKEMQDIQGALQCYSRA 244
K+++A H +A ++ +P + A Y+ K + ++ A Y +
Sbjct: 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQE 62
Query: 245 IQINP------GFADAHSNLASIHKDSGK 267
+ + A A + KD +
Sbjct: 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQR 91
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 77.8 bits (192), Expect = 2e-17
Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 21/119 (17%)
Query: 134 EAEECYNTALRLC---PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
+A Y A+ A+ L + R G +A + ++ FP A
Sbjct: 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
A VL G+ + + I +Q Y +AI
Sbjct: 68 AMVLYNLGRYEQGVELLLKIIAETSD------------------DETIQSYKQAILFYA 108
Score = 72.4 bits (178), Expect = 1e-15
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Query: 163 QGYIEEATRLYLKALEVF---PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD 219
G +A Y KA+ + A + L S + G+ A ++ P+
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 220 AYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
L + + ++ + I
Sbjct: 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETS 92
Score = 68.6 bits (168), Expect = 3e-14
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 197 QGKLTDALLHYKEAIRI---QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253
G A+ +Y++AI A+ Y +G+T + + + + A + ++ P
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 254 AHSNLASIHKDSGK 267
A + + G+
Sbjct: 63 LRVFYAMVLYNLGR 76
Score = 52.0 bits (125), Expect = 2e-08
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 18/68 (26%)
Query: 5 AIDTYRRAIEL---QPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLA 46
A+ Y +AI + + Y L + + G+ PN A
Sbjct: 9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYA 68
Query: 47 NALKEKGQ 54
L G+
Sbjct: 69 MVLYNLGR 76
Score = 41.2 bits (97), Expect = 9e-05
Identities = 8/50 (16%), Positives = 12/50 (24%), Gaps = 2/50 (4%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEK 52
A ++ PN A L G+ L + E
Sbjct: 44 RKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYE--QGVELLLKIIAET 91
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 83.6 bits (206), Expect = 3e-17
Identities = 17/159 (10%), Positives = 49/159 (30%), Gaps = 2/159 (1%)
Query: 111 ALSPDDGTTFSYIISVLLLIQVS-EAEECYNTALRLCPTHADSLNNLANIKRE-QGYIEE 168
S + Y +VL + S A + A+ L + + + + Q + E
Sbjct: 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE 150
Query: 169 ATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL 228
+E P+ + +++ + L + + A+ + +
Sbjct: 151 EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI 210
Query: 229 KEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+E + LQ + ++ + + + ++
Sbjct: 211 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 249
Score = 81.7 bits (201), Expect = 9e-17
Identities = 24/204 (11%), Positives = 64/204 (31%), Gaps = 16/204 (7%)
Query: 112 LSPDDGTTFSYIISVL--LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEA 169
L+ + T + + +L L + E + P + ++ + +
Sbjct: 126 LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQE 185
Query: 170 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLK 229
L + A + V+Q+ + L + + ++ ++ +
Sbjct: 186 LEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS 245
Query: 230 EM------QDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG--------KRGFFIRTD 275
++ +Q I++ P A + L I +D G + ++
Sbjct: 246 NTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPS 305
Query: 276 LNSAYFWLLLLDAHSNLASIHKDS 299
+S Y L+D + ++ D+
Sbjct: 306 HSSPYLIAFLVDIYEDMLENQCDN 329
Score = 70.5 bits (172), Expect = 4e-13
Identities = 15/127 (11%), Positives = 41/127 (32%), Gaps = 1/127 (0%)
Query: 142 ALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGK-L 200
+ D + + + E A +L A+E+ +L+ K L
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 201 TDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLAS 260
+ + + I QP + + ++ ++D L+ + + + A +
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208
Query: 261 IHKDSGK 267
+ ++
Sbjct: 209 VIQEFKL 215
Score = 66.6 bits (162), Expect = 7e-12
Identities = 27/257 (10%), Positives = 73/257 (28%), Gaps = 44/257 (17%)
Query: 12 AIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYKYTRELAP 71
I F D Y L+ + A+ +A ++N + + + R L
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDER--SERAFKLTRDA----IELNAANYTVWHFRRVL-- 140
Query: 72 GNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY----ALSPDDGTTFSYIISVL 127
L + + E+ P + + + ++
Sbjct: 141 -----------------LKSLQKDLHE-------EMNYITAIIEEQPKNYQVWHHRRVLV 176
Query: 128 -LLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAA 186
L S+ E L + + + + +E + + + L+ +
Sbjct: 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSV 236
Query: 187 HSNLASVLQQQGKLTD------ALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQC 240
+ V+ D + + E I++ P A++ + L++ +
Sbjct: 237 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNL 295
Query: 241 YSRAIQINPGFADAHSN 257
++ + + P + +
Sbjct: 296 LNQLLDLQPSHSSPYLI 312
Score = 51.2 bits (122), Expect = 6e-07
Identities = 27/203 (13%), Positives = 65/203 (32%), Gaps = 25/203 (12%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEK------GQINVL 58
++ IE QP + + ++ P+ + K + V+
Sbjct: 151 EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI 210
Query: 59 HKPPYKYTRELAPGNRIRIGYVSSDFGNHPT-SHLMQSVPGMHNKSRVEIFCYALS---- 113
+ + EL ++ + D N+ + + + + +
Sbjct: 211 QEFK-LWDNELQYVDQ----LLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 265
Query: 114 -----PDDGTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADS--LNNLANIKRE--QG 164
P + + ++Y+ +L +S+ N L L P+H+ + L +I + +
Sbjct: 266 MIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLEN 325
Query: 165 YIEEATRLYLKALEVFPEFAAAH 187
+ + KALE+ A
Sbjct: 326 QCDNKEDILNKALELCEILAKEK 348
Score = 32.7 bits (74), Expect = 0.39
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAY 42
+++ + I+L P+ A+ L L+++G +P+
Sbjct: 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLL 296
Score = 28.9 bits (64), Expect = 5.9
Identities = 22/154 (14%), Positives = 43/154 (27%), Gaps = 35/154 (22%)
Query: 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHK 60
L D + + ++ + + Y + A +E
Sbjct: 215 LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT------GYNDRAVLERE--------- 259
Query: 61 PPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIF---CYALSPDDG 117
+YT E+ I++ N + ++ + S+ L P
Sbjct: 260 --VQYTLEM-----IKL-----VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHS 307
Query: 118 TTFSY-----IISVLLLIQVSEAEECYNTALRLC 146
+ + I +L Q E+ N AL LC
Sbjct: 308 SPYLIAFLVDIYEDMLENQCDNKEDILNKALELC 341
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 76.1 bits (188), Expect = 8e-17
Identities = 19/114 (16%), Positives = 45/114 (39%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
+ L N G I++A + Y +A+++ P +SN ++ ++G A +
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263
+ ++P + YS L+ + + A + Y ++ L ++
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117
Score = 52.2 bits (126), Expect = 2e-08
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 15/102 (14%)
Query: 166 IEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMG 225
+E+ L K + G + DAL Y EAI++ P YSN
Sbjct: 1 MEQVNELKEKGNKAL---------------SVGNIDDALQCYSEAIKLDPHNHVLYSNRS 45
Query: 226 NTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
+ D Q A + + + + P + +S A+ + +
Sbjct: 46 AAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 87
Score = 39.9 bits (94), Expect = 3e-04
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 15/65 (23%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
A+ Y AI+L P+ Y N + A +KG P++ Y A AL
Sbjct: 23 ALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82
Query: 50 KEKGQ 54
+ +
Sbjct: 83 EFLNR 87
Score = 36.8 bits (86), Expect = 0.004
Identities = 12/63 (19%), Positives = 20/63 (31%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
+A E + L P + A EEA R Y + L+ L ++
Sbjct: 56 KAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
Query: 194 LQQ 196
+
Sbjct: 116 EAR 118
Score = 34.5 bits (80), Expect = 0.026
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALK 50
A + + ++L+P++ Y A AL+ F +A LK
Sbjct: 55 QKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN--RFEEAKRTYEEGLK 100
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 79.0 bits (194), Expect = 3e-16
Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 4/146 (2%)
Query: 127 LLLIQVSEAEECYNTALRLC--PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA 184
L+ + ++ + ALR + + I + ++ A + K + +
Sbjct: 105 LMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT 164
Query: 185 AAHSNLASVLQQQG--KLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYS 242
A V G KL DA ++E + + A
Sbjct: 165 LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQ 224
Query: 243 RAIQINPGFADAHSNLASIHKDSGKR 268
A+ + G + NL + + GK
Sbjct: 225 EALDKDSGHPETLINLVVLSQHLGKP 250
Score = 75.9 bits (186), Expect = 3e-15
Identities = 28/255 (10%), Positives = 71/255 (27%), Gaps = 16/255 (6%)
Query: 5 AIDTYRRAIELQP-NFPDAYCNLANALKEKGQPN-----FPDAYCNLANALKEKGQINVL 58
I+ +R P + L A + + + A++ +
Sbjct: 18 CINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLAS 77
Query: 59 HKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGT 118
H EL + + T LM + ++++ D
Sbjct: 78 HSRRDAIVAELDREMSRSVDV------TNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE 131
Query: 119 TFSYIISVLLLI-QVSEAEECYNTALRLCPTHADSLNNLANIKREQGY--IEEATRLYLK 175
+ + +LL + ++ A + + A + G +++A ++ +
Sbjct: 132 CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191
Query: 176 ALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQ 235
+ + A+ QG+ A +EA+ + N+ + +
Sbjct: 192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPP 251
Query: 236 GALQCY-SRAIQINP 249
Y S+ +
Sbjct: 252 EVTNRYLSQLKDAHR 266
Score = 35.9 bits (82), Expect = 0.034
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKE 51
+ A + A++ P+ NL + G+P P+ + LK+
Sbjct: 216 WEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP--PEVTNRYLSQLKD 263
Score = 33.6 bits (76), Expect = 0.20
Identities = 8/53 (15%), Positives = 14/53 (26%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQ 54
+DLA ++ + + A G DAY +
Sbjct: 146 LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP 198
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 74.2 bits (183), Expect = 3e-16
Identities = 21/109 (19%), Positives = 40/109 (36%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
A+ + A + Y + ++ PE A +SN A+ L + +A+ +
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNL 258
AI P+F AY +++ AL+ A + + S
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 112
Score = 54.6 bits (132), Expect = 3e-09
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH 255
+ +A+ Y E I+ P A YSN L ++ A+ ++AI+ +P F A+
Sbjct: 16 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 75
Query: 256 SNLASIHKDSGK 267
A+ +
Sbjct: 76 IRKATAQIAVKE 87
Score = 40.3 bits (95), Expect = 3e-04
Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 15/67 (22%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLAN 47
A+ Y I+ P Y N A AL + PNF AY A
Sbjct: 21 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80
Query: 48 ALKEKGQ 54
A +
Sbjct: 81 AQIAVKE 87
Score = 39.6 bits (93), Expect = 4e-04
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
A+ G D A++ Y+ I+ P A +SN A
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA 45
Score = 34.9 bits (81), Expect = 0.019
Identities = 10/57 (17%), Positives = 13/57 (22%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
EA N A+ P + A + A A E S
Sbjct: 56 EAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 74.2 bits (183), Expect = 4e-16
Identities = 30/117 (25%), Positives = 50/117 (42%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
P A N N ++G A R Y +A++ PE A +SN A+ L + + AL
Sbjct: 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDD 69
Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263
IR+ F Y L M++ A + Y A+Q++P +A + + +
Sbjct: 70 CDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126
Score = 51.8 bits (125), Expect = 2e-08
Identities = 22/93 (23%), Positives = 39/93 (41%)
Query: 175 KALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDI 234
+ + PE A N + ++G A+ HY EA++ P A YSN L ++ +
Sbjct: 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63
Query: 235 QGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
Q AL I+++ F + A+ +
Sbjct: 64 QRALDDCDTCIRLDSKFIKGYIRKAACLVAMRE 96
Score = 36.4 bits (85), Expect = 0.006
Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 15/65 (23%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
A+ Y A++ P Y N A L + + F Y A L
Sbjct: 32 AMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91
Query: 50 KEKGQ 54
+
Sbjct: 92 VAMRE 96
Score = 34.9 bits (81), Expect = 0.018
Identities = 14/62 (22%), Positives = 22/62 (35%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
A + +T +RL A +A R Y AL+V P A + +
Sbjct: 65 RALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124
Query: 194 LQ 195
L+
Sbjct: 125 LR 126
Score = 32.6 bits (75), Expect = 0.12
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALK 50
A+D I L F Y A L + A +AL+
Sbjct: 64 QRALDDCDTCIRLDSKFIKGYIRKAACLVAMR--EWSKAQRAYEDALQ 109
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 75.1 bits (185), Expect = 5e-16
Identities = 25/121 (20%), Positives = 46/121 (38%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
A+ L AN + E A + Y +A+E+ P A + N + + AL
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269
AI + + Y + + + AL+ Y +++ P DA +K ++
Sbjct: 73 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 132
Query: 270 F 270
F
Sbjct: 133 F 133
Score = 38.9 bits (91), Expect = 0.002
Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 15/65 (23%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
AI Y +AIEL P+ Y N + A + Y A +
Sbjct: 32 AIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91
Query: 50 KEKGQ 54
G+
Sbjct: 92 MALGK 96
Score = 37.0 bits (86), Expect = 0.007
Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 2/86 (2%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
A A+ L + A G A R Y ++V P A
Sbjct: 65 YALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124
Query: 194 --LQQQGKLTDALLHYKEAIRIQPSF 217
+ +Q A+ + + S
Sbjct: 125 NKIVKQKAFERAIAGDEHKRSVVDSL 150
Score = 33.9 bits (78), Expect = 0.076
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALK 50
A+ RAIEL + Y A + G F A + +K
Sbjct: 64 GYALGDATRAIELDKKYIKGYYRRAASNMALG--KFRAALRDYETVVK 109
Score = 28.5 bits (64), Expect = 5.1
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDA 41
A+ Y ++++P+ DA K Q F A
Sbjct: 98 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA 136
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 72.1 bits (176), Expect = 1e-13
Identities = 22/197 (11%), Positives = 58/197 (29%), Gaps = 26/197 (13%)
Query: 125 SVLLLIQVSEAEECYNTALRLCPTHADSLNNL-----ANIKREQGYIEEATRLYLKALEV 179
S+ + + T ++ P L N + + + A+ L + ++
Sbjct: 169 SLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS 228
Query: 180 FPEFAAAHSNLASVLQQ--------QGKLTDALLHYKEAIRI--QPSFADAYSNMGNTLK 229
PEF A + A V + +L + + + + Y +
Sbjct: 229 SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSAL 288
Query: 230 EMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK---------RGFFIRTDLNSAY 280
+ Q + I + + + L +++ G F +R +
Sbjct: 289 VKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPG-ANTL 346
Query: 281 FWLLLLDAHSNLASIHK 297
+W+ +++ +
Sbjct: 347 YWIENGIFQTSVPYVVP 363
Score = 37.4 bits (86), Expect = 0.014
Identities = 10/79 (12%), Positives = 18/79 (22%), Gaps = 25/79 (31%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLAN-------------------------ALKEKGQP 36
++ A + ++ P F A A +
Sbjct: 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN 274
Query: 37 NFPDAYCNLANALKEKGQI 55
N Y A + KG+
Sbjct: 275 NLSIIYQIKAVSALVKGKT 293
Score = 36.6 bits (84), Expect = 0.021
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPN 37
D + I+L+ ++ Y L + KG
Sbjct: 293 TDESYQAINTGIDLEMSW-LNYVLLGKVYEMKGMNR 327
Score = 30.8 bits (69), Expect = 1.6
Identities = 11/51 (21%), Positives = 14/51 (27%), Gaps = 4/51 (7%)
Query: 2 IDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEK 52
A D Y A L+P Y Q + P L L +
Sbjct: 326 NREAADAYLTAFNLRPGANTLYWIENGIF----QTSVPYVVPYLDKFLASE 372
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 69.2 bits (168), Expect = 2e-12
Identities = 20/126 (15%), Positives = 49/126 (38%), Gaps = 3/126 (2%)
Query: 133 SEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 192
+ + ++ +C L +L +I R + +A Y A ++ P ++ LA
Sbjct: 138 AIVKPQSSSCSYIC---QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAI 194
Query: 193 VLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA 252
+ +G + +Y +I ++ F A +N+ L + + + ++ F
Sbjct: 195 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFI 254
Query: 253 DAHSNL 258
H ++
Sbjct: 255 KFHGHV 260
Score = 57.3 bits (137), Expect = 9e-09
Identities = 22/87 (25%), Positives = 36/87 (41%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
Q S+AE Y A +L P++ N LA + +G Y +++ V F AA +NL
Sbjct: 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL 226
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSF 217
L + + D + +F
Sbjct: 227 QKALSKALESRDEVKTKWGVSDFIKAF 253
Score = 56.1 bits (134), Expect = 2e-08
Identities = 24/164 (14%), Positives = 57/164 (34%), Gaps = 5/164 (3%)
Query: 153 LNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIR 212
+ L I +Q + + + + H L + + + + + A +Y+ A +
Sbjct: 123 SSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVH--LGDIARYRNQTSQAESYYRHAAQ 180
Query: 213 IQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFI 272
+ PS Y+ + D + Y R+I + F A +NL + + +
Sbjct: 181 LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV 240
Query: 273 RTDLNSAYFWLLLLDAHSNLASIHKDSVVMSLLQIIHEFIVGFD 316
+T + F + H ++ + + L + + F
Sbjct: 241 KTKWGVSDFIKAFIKFHGHV---YLSKSLEKLSPLREKLEEQFK 281
Score = 29.9 bits (66), Expect = 2.9
Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 15/67 (22%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKG---------------QPNFPDAYCNLAN 47
A YR A +L P+ Y LA KG + FP A NL
Sbjct: 169 SQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK 228
Query: 48 ALKEKGQ 54
AL + +
Sbjct: 229 ALSKALE 235
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 63.9 bits (156), Expect = 2e-12
Identities = 21/103 (20%), Positives = 35/103 (33%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
A L N EA Y +A+ P A ++N A + + AL
Sbjct: 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 65
Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
+ A+ + A+ +G EM+ A+ RA +
Sbjct: 66 CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108
Score = 52.7 bits (127), Expect = 2e-08
Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 13/108 (12%)
Query: 134 EAEECYNTALRLCPTHADSLNN--LANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191
EA CY A+ P A N L +K +Q E+A +ALE+ + AH L
Sbjct: 27 EAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--PEQALADCRRALELDGQSVKAHFFLG 84
Query: 192 SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ 239
+ +A+ + + A + L DI AL+
Sbjct: 85 QCQLEMESYDEAIANLQRAYSLAKE---------QRLNFGDDIPSALR 123
Score = 50.4 bits (121), Expect = 1e-07
Identities = 18/72 (25%), Positives = 27/72 (37%)
Query: 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH 255
K +A Y AI P A Y+N +MQ + AL RA++++ AH
Sbjct: 21 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 80
Query: 256 SNLASIHKDSGK 267
L +
Sbjct: 81 FFLGQCQLEMES 92
Score = 40.8 bits (96), Expect = 2e-04
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
++ A GN L + A CY RAI NP A ++N A
Sbjct: 1 GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRA 50
Score = 36.9 bits (86), Expect = 0.005
Identities = 13/65 (20%), Positives = 15/65 (23%), Gaps = 15/65 (23%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
A Y RAI P Y N A + Q A+ L
Sbjct: 28 AAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87
Query: 50 KEKGQ 54
E
Sbjct: 88 LEMES 92
Score = 32.3 bits (74), Expect = 0.19
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALK 50
+ A+ RRA+EL A+ L E ++ +A NL A
Sbjct: 60 EQALADCRRALELDGQSVKAHFFLGQCQLEME--SYDEAIANLQRAYS 105
Score = 28.4 bits (64), Expect = 3.7
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 5/44 (11%)
Query: 133 SEAEECYNTALRLCPTHADSL-----NNLANIKREQGYIEEATR 171
EA A L + + L K+++ E R
Sbjct: 94 DEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERR 137
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.9 bits (168), Expect = 4e-12
Identities = 102/604 (16%), Positives = 180/604 (29%), Gaps = 215/604 (35%)
Query: 119 TFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNN----------LANIKREQGYI-- 166
++ S+ +E +N L P + + + GY+
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKIL---PEPTEGFAADDEPTTPAELVG---KFLGYVSS 70
Query: 167 ---EEATRLYLKALE-VFPEFAAA-------HSNLASVLQQQGKLTDALLHYKEAIRIQP 215
+ + L EF H+ A +LQ+ L+ KE I+
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT---TLVKTKELIK--- 124
Query: 216 SFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG----FF 271
++ A + AL F A + G +G +F
Sbjct: 125 NYITARIMAKRPFDKKS--NSAL------------FRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 272 --IRTDLNSAYFWLL--LLDAHSN-LASIHKDSVVMSLLQIIHEFIVGFDLTFYLFQVMW 326
+R DL Y L+ L+ + L+ + + ++ + F G ++ + W
Sbjct: 171 EELR-DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV-----FTQGLNI------LEW 218
Query: 327 LGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMPDTYFI-----G-DHNQMFPHLK 380
L P + DY+++ ++ PL Q LA Y + G ++ +LK
Sbjct: 219 LENPSNTPDK--DYLLSIPISCPLIGVIQ----LA----HYVVTAKLLGFTPGELRSYLK 268
Query: 381 ---------------------ERFIVSGKYSEKLAFMPDTYFIGDHNQM-FPHLKERFIV 418
E F VS + + + F FIG +P+
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF-----FIGVRCYEAYPN------- 316
Query: 419 SGKTMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQS-IVITSRQQYGLPEDAIV 477
T + ++ S+ E VP + I+ L ++
Sbjct: 317 ---TSLPPSILEDSLEN------------------NEGVPSPMLSIS-----NLTQEQ-- 348
Query: 478 YCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANISRPLFRPRLRPSASTSI 537
+Q +VN NS L PA + IS L + + ++
Sbjct: 349 --------------VQDYVNKT----NSHL-----PAGKQVEIS--LV------NGAKNL 377
Query: 538 VLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ------- 590
V+ P S L+ L ++ GLDQ RI FS E ++
Sbjct: 378 VVSGPPQS-LYGLN------LTLRKAKAPSGLDQSRIPFS-----ERKLKFSNRFLPVAS 425
Query: 591 ------LADVCLDTPLCNGHTTSMDVLWTGT----PVV-TLPGETLASRVAASQLATLGC 639
L + L N +V + PV T G L RV + ++
Sbjct: 426 PFHSHLLVPA---SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL--RVLSGSISERIV 480
Query: 640 PELI 643
+I
Sbjct: 481 DCII 484
Score = 67.0 bits (163), Expect = 1e-11
Identities = 107/708 (15%), Positives = 198/708 (27%), Gaps = 291/708 (41%)
Query: 12 AIELQPNFPDAYCN-LANALKEKGQPNFPDAYCNLANALKEKGQIN--VLHKPPYKYTRE 68
+ ++P+ + L L E F + Y L+ I+ T
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTE-----FENCY------LEGN-DIHALAAKLLQENDTTL 116
Query: 69 LAPGNRIRIGYVSSDFGNHPTSH-----LMQSVPGMHNKSRVEIFCYALSPDDGTTFSYI 123
+ I+ + P L ++V + ++ A+ G T Y
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAV----GEGNAQL--VAIFGGQGNTDDY- 169
Query: 124 ISVLLLIQVSEAEECYNT----ALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEV 179
E + Y T L A++L+ L +A +++ + L +
Sbjct: 170 --------FEELRDLYQTYHVLVGDLIKFSAETLSELIRTT------LDAEKVFTQGLNI 215
Query: 180 F-----PEFAAAHSNLASV--------LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGN 226
P L S+ + Q L HY ++ +G
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQ-------LAHYVVTAKL----------LGF 258
Query: 227 TLKEMQD-IQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWLLL 285
T E++ ++GA S+ + A+ S W
Sbjct: 259 TPGELRSYLKGATGH-SQGLVTAVAIAETDS-------------------------W--- 289
Query: 286 LDAHSNLASIHKDSVVMSLLQIIHEFIVGFDLTFYLFQVMWLG------YPGTSGASYMD 339
S + + I LF ++G YP TS +
Sbjct: 290 ----------------ESFFVSVRKAIT------VLF---FIGVRCYEAYPNTSLPPSI- 323
Query: 340 YIITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKYSEKLAFMPDT 399
+ D++ + + S P M +S E++
Sbjct: 324 --LEDSLENNEGVPS---------P----------M-------LSISNLTQEQV-----Q 350
Query: 400 YFIGDHNQMFPHLKERFIVSGKTMIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQ 459
++ N P A QV+ I L NG +
Sbjct: 351 DYVNKTNSHLP--------------AGKQVE-----ISLVNG----------------AK 375
Query: 460 SIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKA--------VPNS---ILW 508
++V++ G P+ LY L + + KA +P S + +
Sbjct: 376 NLVVS-----GPPQS---------LY-----GLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 509 LLKF-PAVGEANISRPLFRPRLRPSASTSIVLKAVPNSILWL---LKFPAVGEANIQATA 564
+F P ++ P L P AS I V N++ + ++ P + T
Sbjct: 417 SNRFLP------VASPFHSHLLVP-ASDLINKDLVKNNVSFNAKDIQIP------VYDTF 463
Query: 565 QALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTP------VV 618
G D R+L +++ + + D C+ + V W T ++
Sbjct: 464 D--GSDL-RVLSGSISER--------IVD-CI---------IRLPVKWETTTQFKATHIL 502
Query: 619 TL-PGET--LASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRDY 663
PG L ++ T G ++A T + + D DY
Sbjct: 503 DFGPGGASGLGVLTHRNKDGT-GVRVIVAGT--------LDINPDDDY 541
Score = 34.6 bits (79), Expect = 0.12
Identities = 41/215 (19%), Positives = 62/215 (28%), Gaps = 85/215 (39%)
Query: 57 VLHKPPYKYTRELAP-GNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPD 115
V++ P G RIR Y + F +++ K+ +IF
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYSAMIF---------ETIVDGKLKTE-KIFKEI---- 1710
Query: 116 DGTTFSYIISVLLLIQVSEAEECYNT-----ALRLCPTHADSLNNLANIKREQGYIEEAT 170
+ + SY SE T AL +E+A
Sbjct: 1711 NEHSTSYTFR-------SEKGLLSATQFTQPAL------------TL--------MEKAA 1743
Query: 171 RLYLKALEVFPEFA--AAHSNL---------ASVLQQQGKLTDA--LLHYKEAIRIQPSF 217
LK+ + P A A HS L A V+ + ++ Y R
Sbjct: 1744 FEDLKSKGLIPADATFAGHS-LGEYAALASLADVM----SIESLVEVVFY----R----- 1789
Query: 218 ADAYSNMGNTLKEM--QDIQGALQCYSRAIQINPG 250
G T++ +D G I INPG
Sbjct: 1790 -------GMTMQVAVPRDELGRSNY--GMIAINPG 1815
Score = 33.1 bits (75), Expect = 0.39
Identities = 36/217 (16%), Positives = 63/217 (29%), Gaps = 54/217 (24%)
Query: 466 RQQYGLPEDAIVYCNFNQLY---------KIDPSTLQMWVNVLKAVPNSILWLLK-FPAV 515
+ YG IV N L +I + M + + + + L K F +
Sbjct: 1654 KDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM---IFETIVDGKLKTEKIFKEI 1710
Query: 516 GEANISRPLFR-PR--LRPSASTSIVLKAVPNSILWLLK----FPA--------VGE--A 558
E + + FR + L + T L + + LK PA +GE A
Sbjct: 1711 NE-HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA 1769
Query: 559 NIQATAQALGL-DQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPV 617
+ + A + + ++F RG V + M + G
Sbjct: 1770 -LASLADVMSIESLVEVVF----------YRGMTMQVAVPRDELGRSNYGMIAINPGRVA 1818
Query: 618 VTLPGETLASRVAASQLATLGCPELIARTHKEYQDIA 654
+ E L V E + + +I
Sbjct: 1819 ASFSQEALQYVV-----------ERVGKRTGWLVEIV 1844
Score = 31.6 bits (71), Expect = 1.2
Identities = 50/287 (17%), Positives = 79/287 (27%), Gaps = 107/287 (37%)
Query: 275 DL--NSAYF---WLLLLDAHSNLASIH-KDSVVMSLLQIIHEFIVGFDLTFYLFQVMWLG 328
DL S W N A H KD+ S+L I+ V +LT +
Sbjct: 1634 DLYKTSKAAQDVW--------NRADNHFKDTYGFSILDIVINNPV--NLTIH-------- 1675
Query: 329 YPGTSG----ASYMDYI---ITDAVTSPLALASQYSEKLAFMPDTYFIGDHNQMF----- 376
+ G G +Y I I D + + +E F + +
Sbjct: 1676 FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS---TSYTFRSEKGLLSATQFT 1732
Query: 377 -PHLKERFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKTMIA--S-G----- 427
P L ++ A F LK + ++ A S G
Sbjct: 1733 QPAL---TLME------KA-------------AFEDLKSKGLIPADATFAGHSLGEYAAL 1770
Query: 428 -------QVQTSVNGIVLQNGLATNQTNTKTATGEE-------VPQSIVIT--------- 464
+++ V +V G+ + G P + +
Sbjct: 1771 ASLADVMSIESLVE-VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 465 ----SRQQYGLPEDAIVYCNFN---QLYKI--DPSTLQMWVNVLKAV 502
++ L E IV N+N Q Y D L NVL +
Sbjct: 1830 VERVGKRTGWLVE--IV--NYNVENQQYVAAGDLRALDTVTNVLNFI 1872
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 62.8 bits (153), Expect = 6e-12
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 3/100 (3%)
Query: 167 EEATRLYLKALEVFPEF---AAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSN 223
A Y +AL + A H N A+ + A +AI A
Sbjct: 45 GGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104
Query: 224 MGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263
L+++ + A+ R + + P L +I
Sbjct: 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144
Score = 45.0 bits (107), Expect = 1e-05
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 196 QQGKLTDALLHYKEAIRIQPSFAD---AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA 252
+ G AL Y +A+ + + D + N +++D A S+AI+ + G
Sbjct: 40 KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV 99
Query: 253 DAHSNLASIHKDSGK 267
A + + G+
Sbjct: 100 KALYRRSQALEKLGR 114
Score = 35.4 bits (82), Expect = 0.021
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD---AHSNLA 259
+ GN L + D GAL Y++A+ ++ D H N A
Sbjct: 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRA 72
Score = 31.9 bits (73), Expect = 0.30
Identities = 8/60 (13%), Positives = 23/60 (38%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
+AE + A+ +L + + G +++A + + + P+ L ++
Sbjct: 83 KAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142
Score = 30.8 bits (70), Expect = 0.62
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 18/68 (26%)
Query: 5 AIDTYRRAIELQPNFPD---AYCNLANA---LKEKGQ------------PNFPDAYCNLA 46
A+ Y +A+ L D + N A L++ + A +
Sbjct: 47 ALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106
Query: 47 NALKEKGQ 54
AL++ G+
Sbjct: 107 QALEKLGR 114
Score = 29.2 bits (66), Expect = 2.1
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALK 50
D A +AIE A + AL++ G A +L +
Sbjct: 82 DKAETEASKAIEKDGGDVKALYRRSQALEKLG--RLDQAVLDLQRCVS 127
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 66.5 bits (162), Expect = 8e-12
Identities = 21/161 (13%), Positives = 44/161 (27%), Gaps = 24/161 (14%)
Query: 131 QVSEAEECYNTALRLCP-----THADSLNNLANIKREQGYIEEATRLYLKALEVFPEF-- 183
EAE AL P + + + L + +G + + L + ++ +
Sbjct: 29 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 88
Query: 184 ----AAAHSNLASVLQQQGKLTDALLHYKEAIRIQ--------PSFADAYSNMGNTLKEM 231
+ + +L QG L A ++A ++ P L
Sbjct: 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 148
Query: 232 QDIQGALQCYSRAIQINPGFADA-----HSNLASIHKDSGK 267
+ A I++ + + L G
Sbjct: 149 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD 189
Score = 61.5 bits (149), Expect = 3e-10
Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 19/138 (13%)
Query: 149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPE-----FAAAHSNLASVLQQQGKLTDA 203
HA+ A + G +EA RL ALE P A S L VL +G+LT +
Sbjct: 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRS 72
Query: 204 LLHYKEAIRI------QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQI--------NP 249
L ++ ++ + L +Q A + +A Q+ P
Sbjct: 73 LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 132
Query: 250 GFADAHSNLASIHKDSGK 267
A + +
Sbjct: 133 MHEFLVRIRAQLLWAWAR 150
Score = 59.6 bits (144), Expect = 1e-09
Identities = 18/151 (11%), Positives = 44/151 (29%), Gaps = 19/151 (12%)
Query: 131 QVSEAEECYNTALRLCPTHAD------SLNNLANIKREQGYIEEATRLYLKALEVFPEF- 183
+++ + ++ H SL + I QG+++ A KA ++ E
Sbjct: 68 ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 127
Query: 184 -------AAAHSNLASVLQQQGKLTDALLHYKEAIRI-----QPSFADAYSNMGNTLKEM 231
A +L +L +A + I + + +
Sbjct: 128 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 187
Query: 232 QDIQGALQCYSRAIQINPGFADAHSNLASIH 262
D+ A +R + +++ +
Sbjct: 188 GDLDNARSQLNRLENLLGNGKYHSDWISNAN 218
Score = 52.3 bits (125), Expect = 3e-07
Identities = 15/160 (9%), Positives = 41/160 (25%), Gaps = 22/160 (13%)
Query: 131 QVSEAEECYNTALRLC-----PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF-- 183
++ EAE + + + L L +G ++ A + +
Sbjct: 150 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY 209
Query: 184 -----AAAHSNLASVLQQQGKLTDALLHYKEAIRIQ----PSFADAYSNMGNTLKEMQDI 234
+ A+ Q G A + + + + N+ + +
Sbjct: 210 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEF 269
Query: 235 QGALQCYSRAIQI------NPGFADAHSNLASIHKDSGKR 268
+ A + L ++ +G++
Sbjct: 270 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 309
Score = 47.3 bits (112), Expect = 1e-05
Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 16/119 (13%)
Query: 131 QVSEAEECYNTALRL----CPTHADSLNNLANIKREQGYIEEATRLYLKALEVF------ 180
+ A + N+A + G E A + + E
Sbjct: 230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM 289
Query: 181 PEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI-QP-----SFADAYSNMGNTLKEMQD 233
+ L + Q G+ +DA +A+++ F M L+++
Sbjct: 290 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQ 348
Score = 43.0 bits (101), Expect = 2e-04
Identities = 15/154 (9%), Positives = 32/154 (20%), Gaps = 23/154 (14%)
Query: 131 QVSEAEECYNTALRLCPTH-------ADSLNNLANIKREQGYIEEATRLYLKALEV---- 179
+ A N L +++ + G A +
Sbjct: 189 DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 248
Query: 180 FPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRI------QPSFADAYSNMGNTLKEMQD 233
N+A G+ A + +E + +
Sbjct: 249 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308
Query: 234 IQGALQCYSRAIQI-NPG-----FADAHSNLASI 261
A + A+++ N F +A
Sbjct: 309 KSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 342
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 60.8 bits (148), Expect = 1e-11
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 1/97 (1%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
+ N +QG EA Y + + P+ +SN A L + G+ T A+ ++
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQ 246
+R + + ++ QGA+ +
Sbjct: 64 GLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVV 99
Score = 56.2 bits (136), Expect = 6e-10
Identities = 13/68 (19%), Positives = 26/68 (38%)
Query: 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH 255
+QG +A+ Y + I QP YSN L ++ + A+Q + ++
Sbjct: 16 KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVA 75
Query: 256 SNLASIHK 263
++
Sbjct: 76 IRSKLQYR 83
Score = 41.9 bits (99), Expect = 5e-05
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
+ GN+L + + A+ CY + I P +SN A
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKA 45
Score = 39.6 bits (93), Expect = 4e-04
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 15/61 (24%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
A+ Y + I QP P Y N A AL + G+
Sbjct: 23 AVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82
Query: 50 K 50
+
Sbjct: 83 R 83
Score = 30.0 bits (68), Expect = 0.84
Identities = 2/29 (6%), Positives = 6/29 (20%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALK 31
AI ++ + +
Sbjct: 55 TQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83
Score = 28.8 bits (65), Expect = 2.1
Identities = 7/49 (14%), Positives = 12/49 (24%), Gaps = 1/49 (2%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPE 182
+A + LR T R + + A + E
Sbjct: 56 QAIQMCQQGLRYTSTAEHVAIRSKLQYRLELA-QGAVGSVQIPVVEVDE 103
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 61.9 bits (150), Expect = 1e-10
Identities = 21/100 (21%), Positives = 35/100 (35%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
A L N EA Y +A+ P A ++N A + + AL +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
A+ + A+ +G EM+ A+ RA +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103
Score = 53.0 bits (127), Expect = 9e-08
Identities = 19/90 (21%), Positives = 32/90 (35%)
Query: 133 SEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 192
EA CY A+ P A N A + E+A +ALE+ + AH L
Sbjct: 21 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80
Query: 193 VLQQQGKLTDALLHYKEAIRIQPSFADAYS 222
+ +A+ + + A + +
Sbjct: 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFG 110
Score = 51.8 bits (124), Expect = 2e-07
Identities = 18/72 (25%), Positives = 27/72 (37%)
Query: 196 QQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAH 255
K +A Y AI P A Y+N +MQ + AL RA++++ AH
Sbjct: 16 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 75
Query: 256 SNLASIHKDSGK 267
L +
Sbjct: 76 FFLGQCQLEMES 87
Score = 39.9 bits (93), Expect = 0.002
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIH 262
A GN L + A CY RAI NP A ++N A +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCY 48
Score = 38.4 bits (89), Expect = 0.005
Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 5/140 (3%)
Query: 129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS 188
+ Q +A AL L + L + E +EA +A + E
Sbjct: 51 MQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110
Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQIN 248
+ + K + I + + + + + L+ R + +
Sbjct: 111 DDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL-----IAAERERELEECQRNHEGH 165
Query: 249 PGFADAHSNLASIHKDSGKR 268
+ A I K
Sbjct: 166 EDDGHIRAQQACIEAKHDKY 185
Score = 35.7 bits (82), Expect = 0.035
Identities = 13/65 (20%), Positives = 15/65 (23%), Gaps = 15/65 (23%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ---------------PNFPDAYCNLANAL 49
A Y RAI P Y N A + Q A+ L
Sbjct: 23 AAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82
Query: 50 KEKGQ 54
E
Sbjct: 83 LEMES 87
Score = 31.4 bits (71), Expect = 0.79
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALK 50
+ A+ RRA+EL A+ L E + +A NL A
Sbjct: 55 EQALADCRRALELDGQSVKAHFFLGQCQLEMES--YDEAIANLQRAYS 100
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 59.8 bits (145), Expect = 2e-10
Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 23/132 (17%)
Query: 155 NLANIKREQG-------YIEEATRLYLKALEVFPEF----------------AAAHSNLA 191
A +E+G I EA Y +AL+ F + + NLA
Sbjct: 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95
Query: 192 SVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGF 251
+ + A+ H + ++I + A +G ++ A + +A +NP
Sbjct: 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155
Query: 252 ADAHSNLASIHK 263
D ++
Sbjct: 156 LDIRNSYELCVN 167
Score = 39.8 bits (93), Expect = 0.001
Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 16/121 (13%)
Query: 131 QVSEAEECYNTALRLCPTHADS----------------LNNLANIKREQGYIEEATRLYL 174
+++EA Y AL + NLA + +A
Sbjct: 53 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112
Query: 175 KALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDI 234
K L++ A L G L +A + +A + P+ D ++ + ++++
Sbjct: 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 172
Query: 235 Q 235
+
Sbjct: 173 R 173
Score = 32.4 bits (74), Expect = 0.28
Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 16/88 (18%)
Query: 196 QQGKLTDALLHYKEAIRIQPSFAD----------------AYSNMGNTLKEMQDIQGALQ 239
++ ++ +A++ YKEA+ + N+ + +D A+
Sbjct: 50 KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAID 109
Query: 240 CYSRAIQINPGFADAHSNLASIHKDSGK 267
S+ ++I+ A L + G
Sbjct: 110 HASKVLKIDKNNVKALYKLGVANMYFGF 137
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 60.8 bits (147), Expect = 3e-10
Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 20/141 (14%)
Query: 134 EAEECYNTALRLCPTH------ADSLNNLANIKR-EQGYIEEATRLYLKALEVFPEF--- 183
A + A+++ A+ L I + +A Y A E + +
Sbjct: 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154
Query: 184 ---AAAHSNLASVLQQQGKLTDALLHYKEAIRI-------QPSFADAYSNMGNTLKEMQD 233
A + G+ +A Y + I+ Q S D + G D
Sbjct: 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD 214
Query: 234 IQGALQCYSRAIQINPGFADA 254
A + +P FAD+
Sbjct: 215 AVAAARTLQEGQSEDPNFADS 235
Score = 51.2 bits (122), Expect = 5e-07
Identities = 24/158 (15%), Positives = 46/158 (29%), Gaps = 23/158 (14%)
Query: 132 VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191
+S+ E A + + + + + EEA L ++A A
Sbjct: 1 ISDPVELLKRAEKKGVPSSGFMKLFSG--SDSYKFEEAADLCVQA--------------A 44
Query: 192 SVLQQQGKLTDALLHYKEAIRIQ------PSFADAYSNMGNTLKEMQDIQGALQCYSRAI 245
++ + + +L A + +A Q + Y K + A+ AI
Sbjct: 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104
Query: 246 QINPGFADAHSNLASIHKDSGKRGFFIRTDLNSAYFWL 283
QI A+ + G+ D A
Sbjct: 105 QIFTHRGQ-FRRGANFKFELGEILENDLHDYAKAIDCY 141
Score = 40.0 bits (93), Expect = 0.002
Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 7/117 (5%)
Query: 131 QVSEAEECYNTALRLC------PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFA 184
++A +CY A A++K G EA+ +Y K ++
Sbjct: 133 DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR 192
Query: 185 AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCY 241
+ +L ++G A A R N ++ +E ++ +
Sbjct: 193 LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS-RESNFLKSLIDAV 248
Score = 28.4 bits (63), Expect = 7.0
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 6/39 (15%)
Query: 5 AIDTYRRAIELQPNFPD------AYCNLANALKEKGQPN 37
A D++ +A + Q + Y K G
Sbjct: 56 AGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 58.8 bits (142), Expect = 2e-09
Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 22/131 (16%)
Query: 155 NLANIKREQG-------YIEEATRLYLKALEVFPEF---------------AAAHSNLAS 192
+ I +E+G ++A Y K + A+H NLA
Sbjct: 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204
Query: 193 VLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFA 252
+ + A+ +A+ + + S G + D + A + + +Q+ P
Sbjct: 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264
Query: 253 DAHSNLASIHK 263
A + LA +
Sbjct: 265 AAKTQLAVCQQ 275
Score = 39.9 bits (93), Expect = 0.002
Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 15/105 (14%)
Query: 131 QVSEAEECYNTALRLCPTHADS---------------LNNLANIKREQGYIEEATRLYLK 175
+ +A Y + + NLA + A K
Sbjct: 162 KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221
Query: 176 ALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA 220
ALE+ S A +++ +++ P+ A
Sbjct: 222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266
Score = 35.3 bits (81), Expect = 0.053
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
A E N AL L + L+ E A + K L+++P AA + LA
Sbjct: 214 AAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273
Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGA 237
Q+ + +E Y+NM L E ++ A
Sbjct: 274 QQRIRRQLA-----RE--------KKLYANMFERLAEEENKAKA 304
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 55.9 bits (134), Expect = 2e-09
Identities = 20/135 (14%), Positives = 43/135 (31%), Gaps = 21/135 (15%)
Query: 167 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGK----------LTDALLHYKEAIRIQPS 216
E+ + + P A + VL + + + +A+ ++EA+ I P
Sbjct: 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78
Query: 217 FADAYSNMGNTL-----------KEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDS 265
+A +GN + + A Q + +A+ P +L K
Sbjct: 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 138
Query: 266 GKRGFFIRTDLNSAY 280
+ L ++
Sbjct: 139 QLHAEAYKQGLGGSH 153
Score = 40.5 bits (94), Expect = 4e-04
Identities = 9/89 (10%), Positives = 13/89 (14%), Gaps = 25/89 (28%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQ-------------------------PNFP 39
+ P D L E Q P
Sbjct: 21 IRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD 80
Query: 40 DAYCNLANALKEKGQINVLHKPPYKYTRE 68
+A + NA +
Sbjct: 81 EAVWCIGNAYTSFAFLTPDETEAKHNFDL 109
Score = 38.6 bits (89), Expect = 0.002
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 132 VSEAEECYNTALRLCPTHADSLNNLANIKREQG-----------YIEEATRLYLKALEVF 180
+ EA + AL + P +++ + N + AT+ + +A++
Sbjct: 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121
Query: 181 PEFAAAHSNL 190
P+ +L
Sbjct: 122 PDNTHYLKSL 131
Score = 36.7 bits (84), Expect = 0.008
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 1 LIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQ 35
+I AI + A+ + P +A + NA
Sbjct: 61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95
Score = 30.5 bits (68), Expect = 0.89
Identities = 5/40 (12%), Positives = 10/40 (25%)
Query: 220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
+ + + Q + NP AD +
Sbjct: 4 GSMDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWG 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.1 bits (142), Expect = 4e-09
Identities = 64/417 (15%), Positives = 123/417 (29%), Gaps = 112/417 (26%)
Query: 51 EKGQINVLHKPPYKYTRELAPGNRIRIGYVSSDFGNHPTSHLMQSVPGMHNKSRVEIFCY 110
E G+ Y+Y +++ +F + +S+ + + I
Sbjct: 10 ETGEHQ------YQY-KDILSVFEDAF---VDNFDCKDVQDMPKSI--LSKEEIDHII-- 55
Query: 111 ALSPDDGTTFSYIISVLLLIQVSEAEECYNTALR------LCPTHADSLNNLANIKREQG 164
+S D + + LL Q ++ LR + P + +
Sbjct: 56 -MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM--- 111
Query: 165 YIEEATRLYLKALEVFPEF----AAAHSNLASVLQQQ--------------GK--LT-DA 203
YIE+ RLY +VF ++ + L L + GK + D
Sbjct: 112 YIEQRDRLY-NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 204 LLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQ--CYSRAIQINPGFADAHSNLASI 261
L YK ++ + F + N+ N ++ LQ Y QI+P + + ++I
Sbjct: 171 CLSYK--VQCKMDFKIFWLNLKNCNSPETVLE-MLQKLLY----QIDPNWTSRSDHSSNI 223
Query: 262 --HKDSGK---RGFFIRTDLNSAYFWLLLLD--AHSNLAS----------IHKDSVVMSL 304
S + R + LL+L ++ + + V
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENC---LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 305 L---QIIHEFIVGFDLTFYLFQVMWLGYPGTSGASYMDYIITD----AV-TSPLALASQY 356
L H + +T +V L Y+D D + T+P L S
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSL------LLKYLDCRPQDLPREVLTTNPRRL-SII 333
Query: 357 SEKLAFMPDT------YFIGDHNQMF---------PHLKERFIVSGKYSEKLAFMPD 398
+E + T + ++ F ++L+ P
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-------DRLSVFPP 383
Score = 46.0 bits (108), Expect = 4e-05
Identities = 66/475 (13%), Positives = 135/475 (28%), Gaps = 137/475 (28%)
Query: 4 LAIDTYRRAIELQPNFPD-------AYCNLANALKEKGQ-------PNF---PDAYCNL- 45
+A+D + ++Q CN + E Q PN+ D N+
Sbjct: 166 VALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 46 --ANALKEKGQINVLHKPPYK---------YTRELA----PGNRI----RIGYVSSDFGN 86
++++ + + +L PY+ + +I R V+
Sbjct: 225 LRIHSIQAELR-RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 87 HPTSH--LMQSVPGMHNKSRVEIFCYALS------PDDGTTFSYIISVLLLIQVSEAEEC 138
T+H L + + L P + T + L ++E+
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT----TNPRRLSIIAES--- 336
Query: 139 YNTALRLCPTHADSLNNLANIKREQGYIE---------EATRLYLKALEVFPEFAAAHSN 189
+R D+ ++ N + IE E +++ L VFP A +
Sbjct: 337 ----IRDGLATWDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMF-DRLSVFPPSAHIPTI 390
Query: 190 LASVLQQQGKLTD-----ALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRA 244
L S++ +D LH + QP + + I L+
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK---------ESTISIPSIYLELKVKLEN 441
Query: 245 IQINPGFADAHSNLASIHKDSGKRGFF---IRTDLNSAYFWLLLLDAHSNLASIHKDSVV 301
H ++ + + + F + YF+ + H H
Sbjct: 442 E------YALHRSI--VDHYNIPKTFDSDDLIPPYLDQYFYSHI--GH------H----- 480
Query: 302 MSLLQIIHEF----IVGFDLTFYLFQVMWLGYPGTSGAS----------YMDYIITDAVT 347
+ ++ +V D F ++ + S Y YI +
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN--- 537
Query: 348 SPLALASQYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKYSEKLAFMPDTYFI 402
P +Y + + D F+ + K ++ ++A M + I
Sbjct: 538 DP-----KYERLVNAILD--FLPKIEENLICSKYTDLL------RIALMAEDEAI 579
Score = 44.8 bits (105), Expect = 8e-05
Identities = 68/563 (12%), Positives = 139/563 (24%), Gaps = 181/563 (32%)
Query: 195 QQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL--KEMQDIQGALQCYSRAIQINPGFA 252
+ Q + D L +++A D + L +E+ I + S ++
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR------ 66
Query: 253 DAHSNLASIHKDSGKRGF--FIRTDLNSAYFWL----------------LLLDAHSNLAS 294
L + F+ L Y +L + ++ L +
Sbjct: 67 -----LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 295 ----IHKDSV-----VMSL---LQII--HEFIV-----GF-----------DLTFYL--- 321
K +V + L L + + ++ G
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 322 FQVMWLGYPGTSGASYMDYIITDAVTSPL-ALASQYSEKLAFMPDTYFIGDHNQMFPHLK 380
F++ WL + + V L L Q P+ DH+
Sbjct: 182 FKIFWL----NLK----NCNSPETVLEMLQKLLYQ------IDPNWTSRSDHSSNIKLRI 227
Query: 381 E-------RFIVSGKYSEKLAFMPDTYFIGDHNQMFPHLKERFIVSGKTMI--------- 424
R + S Y + + + Q F +S K ++
Sbjct: 228 HSIQAELRRLLKSKPY-------ENCLLVLLNVQNAKAWNA-FNLSCKILLTTRFKQVTD 279
Query: 425 -ASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQ 483
S T ++ L ++ + + + Q LP + N
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEV-------KSLLLKYLDCRPQD--LPREV---LTTNP 327
Query: 484 L--------YKIDPSTLQMWVNVL-----KAVPNSILWLLKFPAVGEANISRPLFRPRLR 530
+ +T W +V + +S+ L E R +F
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-------EPAEYRKMFD---- 376
Query: 531 PSASTSIVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ 590
S+ FP A+I L +++ +V + V
Sbjct: 377 ---RLSV--------------FPP--SAHI--PTILLS-----LIWFDV--IKSDVM--V 406
Query: 591 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR--THK 648
+ + L +++P L +V L ++ K
Sbjct: 407 VVNKLHKYSLVEKQPKES--------TISIPSIYLELKVKLENEYALH-RSIVDHYNIPK 457
Query: 649 EYQDIAIRLGTDRDYCEKALLYH 671
+ + Y + +H
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHH 480
Score = 42.5 bits (99), Expect = 5e-04
Identities = 48/412 (11%), Positives = 115/412 (27%), Gaps = 101/412 (24%)
Query: 307 IIHEFIVGF--DLTFYLFQVMWLGYPGTSGASYMDYIITDAVTSPLALASQYSEKLAFMP 364
I+ F F + Q I++ + ++ +
Sbjct: 21 ILSVFEDAFVDNFDCKDVQ------------DMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 365 DT----------YFIGD-HNQMFPHLKERFIVSGKYSEKLAFMPDTYFIGDHNQMF---P 410
T F+ + + L K ++ M +I ++++
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPI----KTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 411 HLKERFIVSGKTMIASGQVQTSV------NGIVLQNGLATNQTNTKTATGEEVPQSIVIT 464
+ + + + +++ ++ +++ L + KT +V S +
Sbjct: 125 VFAKYNVSRLQPYL---KLRQALLELRPAKNVLIDGVLGSG----KTWVALDVCLSYKVQ 177
Query: 465 SRQQYGL----------PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPA 514
+ + + PE + LY+IDP+ + + I +
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQ-KLLYQIDPNWTSR-SDHSSNIKLRIHSI----- 230
Query: 515 VGEANISRPLFRPRLRPSASTSIVLKAVPNSILWLLK-FPAVGEANIQATAQALGLDQHR 573
+A + R L + + + +VL V N+ F N+ +
Sbjct: 231 --QAELRR-LLKSKPYENCL--LVLLNVQNA--KAWNAF------NLSC----------K 267
Query: 574 ILF----SNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLA-SR 628
IL V ++ L S+ + + LP E L +
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 629 VAASQLATLGCPELIARTHKEYQDIAI-RLGTDRDYCEKAL-------LYHE 672
S +A + +A ++ + +L T + L ++
Sbjct: 328 RRLSIIAES-IRDGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 55.2 bits (132), Expect = 2e-08
Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 20/148 (13%)
Query: 120 FSYIISVLLLIQVSEAEECYNTALRLCPTHADS------LNNLANIKREQGYIEEATRLY 173
+ VL + L T D N +ANI E GY+++ L+
Sbjct: 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLF 178
Query: 174 LKALEVFPEF-------AAAHSNLASVLQQQGKLTDALLHYKEAIRI------QPSFADA 220
+ L+ N A L + ++L +AI I
Sbjct: 179 EQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238
Query: 221 YSNMGNTLKEM-QDIQGALQCYSRAIQI 247
Y G L+++ + Y +A
Sbjct: 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 55.0 bits (132), Expect = 4e-08
Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 17/164 (10%)
Query: 117 GTTFSYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKA 176
Y + V+ + E + + + AD N ++ +EEA + Y A
Sbjct: 146 MADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMA 205
Query: 177 LEVFPEFA-----------------AAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFAD 219
+ + H N+A+ L + + +A+ H + +
Sbjct: 206 IAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPK 265
Query: 220 AYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHK 263
A G E+ + A + +A + P L ++ +
Sbjct: 266 ALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309
Score = 35.0 bits (80), Expect = 0.078
Identities = 15/65 (23%), Positives = 26/65 (40%)
Query: 133 SEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 192
EA N L + +L K E G ++ A + KA + P+ A L +
Sbjct: 247 DEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA 306
Query: 193 VLQQQ 197
+ +Q+
Sbjct: 307 LAEQE 311
Score = 33.1 bits (75), Expect = 0.29
Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 32/129 (24%)
Query: 134 EAEECYNTALRLCPTHADS-----------------LNNLA--NIKREQGY--IEEATRL 172
EA + Y A+ N+A IK ++ I
Sbjct: 197 EAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN-- 254
Query: 173 YLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQ 232
L + A + G++ A +++A + P +E++
Sbjct: 255 --IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI-------RRELR 305
Query: 233 DIQGALQCY 241
+ +
Sbjct: 306 ALAEQEKAL 314
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 51.8 bits (123), Expect = 5e-08
Identities = 18/144 (12%), Positives = 41/144 (28%), Gaps = 25/144 (17%)
Query: 150 ADSLNNL--ANIKREQGYIEEATRLYLKALEVFPEF------------AAAHSNLASVLQ 195
+ L A + G +EA +A+E+ A H+ LA L
Sbjct: 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 68
Query: 196 QQGKLTDALLHYKEAIR-------IQPSFADAYS----NMGNTLKEMQDIQGALQCYSRA 244
+AL +A+ + + + L + A+ + +
Sbjct: 69 GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128
Query: 245 IQINPGFADAHSNLASIHKDSGKR 268
+++ + + + R
Sbjct: 129 VEMIEERKGETPGKERMMEVAIDR 152
Score = 31.8 bits (71), Expect = 0.37
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 11/74 (14%)
Query: 134 EAEECYNTALRLCPTHAD-----------SLNNLANIKREQGYIEEATRLYLKALEVFPE 182
EA + AL + ++ + A G EA + K +E+ E
Sbjct: 75 EALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134
Query: 183 FAAAHSNLASVLQQ 196
+++
Sbjct: 135 RKGETPGKERMMEV 148
Score = 28.3 bits (62), Expect = 5.3
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 11/52 (21%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYC--NLANALKEKGQ 54
A RRA+E+ P +E DA+C LA AL
Sbjct: 30 AAANCRRAMEISHTMPP---------EEAFDHAGFDAFCHAGLAEALAGLRS 72
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 54.3 bits (131), Expect = 7e-08
Identities = 25/121 (20%), Positives = 46/121 (38%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
A+ L AN + E A + Y +A+E+ P A + N + + AL
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 210 AIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGKRG 269
AI + + Y + + + AL+ Y +++ P DA +K ++
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 125
Query: 270 F 270
F
Sbjct: 126 F 126
Score = 41.2 bits (97), Expect = 0.001
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 133 SEAEECYNTALRLCPTHADSLNN--LANIKRE--QGYIEEATRLYLKALEVFPEFAAAHS 188
A + Y+ A+ L P++A N LA ++ E + +AT +A+E+ ++ +
Sbjct: 23 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDAT----RAIELDKKYIKGYY 78
Query: 189 NLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQ 235
A+ GK AL Y+ ++++P DA K ++
Sbjct: 79 RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 125
Score = 33.1 bits (76), Expect = 0.34
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 3 DLAIDTYRRAIELQPNFPDAYCNLANA 29
+ AI Y +AIEL P+ Y N + A
Sbjct: 23 ENAIKFYSQAIELNPSNAIYYGNRSLA 49
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 50.8 bits (122), Expect = 1e-07
Identities = 17/134 (12%), Positives = 35/134 (26%), Gaps = 25/134 (18%)
Query: 155 NLANIKREQG-------YIEEATRLYLKALEVFPEF------------------AAAHSN 189
R++G +EA Y AL ++N
Sbjct: 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68
Query: 190 LASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
++ G L +A E ++ + + A + A + ++ +P
Sbjct: 69 MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128
Query: 250 GFADAHSNLASIHK 263
A + I
Sbjct: 129 AAASVVAREMKIVT 142
Score = 34.3 bits (79), Expect = 0.052
Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 26/124 (20%)
Query: 131 QVSEAEECYNTALRLCPTHADS------------------LNNLA--NIKREQGY--IEE 168
EA + Y AL T N++ + + E
Sbjct: 26 DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85
Query: 169 ATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTL 228
++ + L+ A A KL +A K +R P+ A + +
Sbjct: 86 SS----EVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141
Query: 229 KEMQ 232
E +
Sbjct: 142 TERR 145
Score = 30.8 bits (70), Expect = 0.78
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 12/91 (13%)
Query: 134 EAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASV 193
EAEE + L+ T+ +L A + ++EA L P A+ + +
Sbjct: 81 EAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKI 140
Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNM 224
+ ++ A YS M
Sbjct: 141 VTERRAEKKA----DS--------RVTYSKM 159
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Length = 308
Score = 51.6 bits (123), Expect = 3e-07
Identities = 19/169 (11%), Positives = 52/169 (30%), Gaps = 10/169 (5%)
Query: 129 LIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVF-PEFAAAH 187
L+ + + + A + + L ++ + + +EA +Y +A+ + +
Sbjct: 43 LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 102
Query: 188 SNLASVLQQQGKLTDALLHYKEAIRIQPS-FADAYSNMGNTLKEMQDIQGALQCYSRAIQ 246
A + + K Y + I+ Y + + I+ + +A +
Sbjct: 103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162
Query: 247 INPGFADAHSNLASIHKDSGK-----RGFF---IRTDLNSAYFWLLLLD 287
+ A + K F ++ + + L +D
Sbjct: 163 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID 211
Score = 42.3 bits (99), Expect = 3e-04
Identities = 22/257 (8%), Positives = 64/257 (24%), Gaps = 31/257 (12%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYK 64
+ Y + + + + PD + A L++ + N A ++ N+ +
Sbjct: 35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE-AANIYER---- 89
Query: 65 YTRELAPGN-RIRIGYVSS--DFGNHPTSH-LMQSVPGMHNKSRVEIFCYALSPDDGTTF 120
L N + Y + H + + + + ++
Sbjct: 90 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYI----------- 138
Query: 121 SYIISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIK-REQGYIEEATRLYLKALEV 179
Y+ + + A T A ++ A +++ L+
Sbjct: 139 QYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 198
Query: 180 FPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP-------SFADAYSNMGNTLKEMQ 232
+ + L + + + ++ + + +
Sbjct: 199 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF---ESNIG 255
Query: 233 DIQGALQCYSRAIQINP 249
D+ L+ R
Sbjct: 256 DLASILKVEKRRFTAFR 272
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 49.6 bits (118), Expect = 5e-07
Identities = 18/123 (14%), Positives = 39/123 (31%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
+ ++A T + D A+ E E A L + + +
Sbjct: 21 EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIA 80
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
L QQ + L ++ + P + + ++ + AL+ +++N G
Sbjct: 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140
Query: 251 FAD 253
D
Sbjct: 141 AQD 143
Score = 48.0 bits (114), Expect = 2e-06
Identities = 14/122 (11%), Positives = 31/122 (25%)
Query: 147 PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLH 206
+ + L + +QG +A + + A L + + A
Sbjct: 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQEL 62
Query: 207 YKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
+ L + L+ + + NP + LA + G
Sbjct: 63 LATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVG 122
Query: 267 KR 268
+
Sbjct: 123 RD 124
Score = 38.8 bits (90), Expect = 0.002
Identities = 6/54 (11%), Positives = 13/54 (24%)
Query: 214 QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSGK 267
S + + L + + AL D A ++ +
Sbjct: 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQ 55
Score = 33.4 bits (76), Expect = 0.14
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQP 36
A++ + + + D A+ L E Q
Sbjct: 25 ALNVIQTLSDELQSRGDVKLAKADCLLETKQF 56
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 46.3 bits (110), Expect = 2e-05
Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 16/130 (12%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKA---LEVFPEFA-------------AAHSNLASV 193
++ L N+ N + E A + Y K +E A + N+ +
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282
Query: 194 LQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPGFAD 253
+ A+ EA+ I PS A + +++ AL +A +I P
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342
Query: 254 AHSNLASIHK 263
+ L + +
Sbjct: 343 IQAELLKVKQ 352
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 45.0 bits (106), Expect = 3e-05
Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 4/157 (2%)
Query: 131 QVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNL 190
Q+ +A E A++ P A ++ + G E A ++++++FPE+ S L
Sbjct: 12 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 71
Query: 191 ASVLQQQGKLTDALLHYKEAIRI-QPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINP 249
+++ D A + + N QD + + + ++
Sbjct: 72 RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131
Query: 250 GFADAHSNL--ASIHKDSGKRGFFIRT-DLNSAYFWL 283
++ + + + G +I YF +
Sbjct: 132 EKGFLANDTSFSDVRDIDDRLGGYIELFSTAGNYFLV 168
Score = 44.6 bits (105), Expect = 4e-05
Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 6/123 (4%)
Query: 191 ASVLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQINPG 250
+G+L AL EAI+ P A S+ L D + A + ++I++ P
Sbjct: 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63
Query: 251 FADAHSNLASIHKDSGKRGFFIRTDLNSAYF-----WL-LLLDAHSNLASIHKDSVVMSL 304
+ S L + K + R F + + L+ + ++ S + V
Sbjct: 64 YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 123
Query: 305 LQI 307
LQI
Sbjct: 124 LQI 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 36.6 bits (84), Expect = 0.016
Identities = 26/224 (11%), Positives = 58/224 (25%), Gaps = 12/224 (5%)
Query: 5 AIDTYRRAIELQPNFPDAYCNLANALKEKGQPNFPDAYCNLANALKEKGQINVLHKPPYK 64
++D + + DA+ + + A+ + N + G + +
Sbjct: 25 SLDLFTEITNYDESACDAWIGRI-RCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83
Query: 65 YTRELAPGNRIRIGYVS-SDFGNHPTSHLMQSVPGMHNKSRVEIFCYALSPDDGTTFSYI 123
I S + G + + E A +++
Sbjct: 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQ--GNYADAM-EALEAAPVAGSEHLVAWM 140
Query: 124 ISVLLLIQV--SEAEECYNTALRLCPTHADSLNNLA--NIKREQGYIEEATRLYLKALE- 178
+V+ ++ + +A + +A EA R +A +
Sbjct: 141 KAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS 200
Query: 179 --VFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA 220
A LA + QG + A+ + P A
Sbjct: 201 PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVA 244
Score = 35.9 bits (82), Expect = 0.033
Identities = 14/60 (23%), Positives = 16/60 (26%), Gaps = 3/60 (5%)
Query: 131 QVSEAEECYNTALRLC---PTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH 187
+EAE A LA +R QG A L PE A
Sbjct: 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAA 245
Score = 28.1 bits (62), Expect = 8.5
Identities = 3/28 (10%), Positives = 7/28 (25%)
Query: 232 QDIQGALQCYSRAIQINPGFADAHSNLA 259
+L ++ + DA
Sbjct: 20 MSEARSLDLFTEITNYDESACDAWIGRI 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat,
cysteine rich protein, loop-helix-TU repeat protein,
hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Length = 273
Score = 36.4 bits (85), Expect = 0.018
Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 26/164 (15%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKE 209
L L ++ +A + + KA ++ + + NL VL QG+ + + K+
Sbjct: 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLG-VLYYQGQGVEK--NLKK 60
Query: 210 AIR-IQPS----FADAYSNMGNTLKE----MQDIQGALQCYSRAIQINPGFADAHSNLAS 260
A + +++ +GN Q+ ALQ YS+A + +A+ ++L
Sbjct: 61 AASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGG 118
Query: 261 IHKDSGKRGFFIRTDLNSAYFWLLL------LDAHSNLASIHKD 298
I+ D G + D A + D + L S++
Sbjct: 119 IYHD----GKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 36.0 bits (82), Expect = 0.038
Identities = 14/124 (11%), Positives = 34/124 (27%), Gaps = 3/124 (2%)
Query: 142 ALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLT 201
L P D+ + L + I++A + Y + + FP +
Sbjct: 5 KLEENPYDLDAWSILIREA-QNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYD 63
Query: 202 DALLHYKEAIRIQPSFADAYSNMGNTLKEM-QDIQGALQCYSRAIQINPGFADAHSNLAS 260
++ + D + + ++E + + ++A
Sbjct: 64 KVEKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQ 122
Query: 261 IHKD 264
I D
Sbjct: 123 IWVD 126
Score = 28.3 bits (62), Expect = 9.2
Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 16/132 (12%)
Query: 132 VSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191
+ +A + Y + P+ + + ++ +L+ + L L+
Sbjct: 28 IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87
Query: 192 SVLQQQGKLTDALLHYKEAIRIQPSFA----------DAYSNM------GNTLKEMQDIQ 235
V + +GKL +A Y N + E Q I
Sbjct: 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRIT 147
Query: 236 GALQCYSRAIQI 247
+ Y R
Sbjct: 148 AVRRVYQRGCVN 159
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 35.4 bits (81), Expect = 0.060
Identities = 12/102 (11%), Positives = 24/102 (23%), Gaps = 15/102 (14%)
Query: 134 EAEECYNTALRLCPTHAD---------------SLNNLANIKREQGYIEEATRLYLKALE 178
+A Y + + NLA + +A KAL
Sbjct: 286 QAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345
Query: 179 VFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQPSFADA 220
+ + A +++ + + P A
Sbjct: 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 387
Score = 34.7 bits (79), Expect = 0.11
Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 13/105 (12%)
Query: 133 SEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 192
++A EC + AL L + L + E A + K LEV P+ AA ++
Sbjct: 334 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM 393
Query: 193 VLQQQGKLTDALLHYKEAIRIQPSFADAYSNMGNTLKEMQDIQGA 237
++ KE Y+NM E + A
Sbjct: 394 CQKKA----------KEHNERD---RRIYANMFKKFAEQDAKEEA 425
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt
pseudomonas, protein binding; 2.50A {Pseudomonas
fluorescens}
Length = 452
Score = 33.2 bits (76), Expect = 0.32
Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 21/136 (15%)
Query: 156 LANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEAIRIQP 215
LAN ++G A + Y + E ++ A LA + K+A
Sbjct: 9 LANEALKRGDTVTAQQNYQQLAE--LGYSEAQVGLADIQVGTRDPAQ----IKQAEATYR 62
Query: 216 S----FADAYSNMGNTLKE-----MQDIQGALQCYSRAIQINPGFADAHSNLASIHKDSG 266
+ A + +G L + A +A G + LA ++
Sbjct: 63 AAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKA--FANGEGNTLIPLAMLYLQ-- 118
Query: 267 KRGFFIRTDLNSAYFW 282
++N+
Sbjct: 119 --YPHSFPNVNAQQQI 132
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural
genomics, joint center FO structural genomics, JCSG;
HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Length = 212
Score = 31.8 bits (73), Expect = 0.42
Identities = 16/88 (18%), Positives = 25/88 (28%), Gaps = 15/88 (17%)
Query: 218 ADAYSNMGNTLKEMQDIQGALQCYSR-AIQINPGFADAHSNLASIHKDSGKRGFFIRTDL 276
A + +T D Q A + A Q G DA + LA + + + D
Sbjct: 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ---GDGDALALLAQLKIRNP-----QQADY 69
Query: 277 NSAYFWLLL------LDAHSNLASIHKD 298
A LA + +
Sbjct: 70 PQARQLAEKAVEAGSKSGEIVLARVLVN 97
Score = 30.7 bits (70), Expect = 1.1
Identities = 23/149 (15%), Positives = 40/149 (26%), Gaps = 23/149 (15%)
Query: 149 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYK 208
+ LA+ G ++A KA A + LA + + + D Y
Sbjct: 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQAD----YP 70
Query: 209 EAIR------IQPSFADAYSNMGNTLKE----MQDIQGALQCYSRAIQIN--PGFADAHS 256
+A + + L D+ A+ A + + DA
Sbjct: 71 QARQLAEKAVEA-GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQM 129
Query: 257 NLASIHKDSGKRGFFIRTDLNSAYFWLLL 285
L I+ G D A +
Sbjct: 130 LLGLIYAS----GVHGPEDDVKASEYFKG 154
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 30.0 bits (68), Expect = 1.1
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 9/91 (9%)
Query: 156 LANIKREQGYIEEATRLYLKALEVFPE---FAAAHSNLASVLQQQGKLTDALLHYKEAIR 212
L + A + + +P A L +GK T+A ++
Sbjct: 45 LGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104
Query: 213 IQPSFADAYSNMGNTLKEMQDIQGALQCYSR 243
P +DA L+ ++ L R
Sbjct: 105 QYPG-SDAARVAQERLQSIR-----LGQQLR 129
Score = 28.5 bits (64), Expect = 3.2
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 134 EAEECYNTALRLCPTH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAA 186
AE + + PTH A L L + +G EA + + +P AA
Sbjct: 57 LAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA 112
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A
{Homo sapiens}
Length = 146
Score = 30.1 bits (67), Expect = 1.3
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 3/100 (3%)
Query: 150 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHY-- 207
+ +A+I E+G IE A LY K + +F E H + S + + K T L
Sbjct: 40 GVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLKEIA 99
Query: 208 -KEAIRIQPSFADAYSNMGNTLKEMQDIQGALQCYSRAIQ 246
+A ++ Y+ E + + + AIQ
Sbjct: 100 FPKAEELKAELLKRYTKEYTEYNEEKKKEAEELARNMAIQ 139
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.6
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 9/31 (29%)
Query: 229 KEMQDIQGALQCYSRAIQINPGFADAHSNLA 259
+ ++ +Q +L+ Y+ A A LA
Sbjct: 20 QALKKLQASLKLYA------DDSAPA---LA 41
Score = 28.4 bits (62), Expect = 4.7
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 13/34 (38%)
Query: 158 NIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 191
+K+ ++ + +LY A + A A LA
Sbjct: 21 ALKK----LQASLKLY--A----DDSAPA---LA 41
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform
CRA_B; HERG, PAS domain, voltage-gated potassium
channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Length = 138
Score = 28.8 bits (65), Expect = 2.8
Identities = 5/26 (19%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 455 EEVPQSIVITSRQQYGLPEDAIVYCN 480
E + +I + + ++YCN
Sbjct: 26 EGQSRKFIIANARVENCA---VIYCN 48
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 28.8 bits (65), Expect = 3.1
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 617 VVTLPGETLASRVAASQLATLGCPELIARTHKEYQ-DIAIRLGTDR 661
+V + AS + L L P + + Y + ++G DR
Sbjct: 75 IVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADR 120
>1vke_A Carboxymuconolactone decarboxylase family protein; TM1620,
structural genomics, JC protein structure initiative,
PSI; 1.56A {Thermotoga maritima} SCOP: a.152.1.2
Length = 133
Score = 28.3 bits (63), Expect = 4.2
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 151 DSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTDALLHYKEA 210
D +++ + + ++E L K L NL S + + GKL KE
Sbjct: 4 DKIHHHHHHMEYKKFVEARRELNEKVLSRGTLNTKRFFNLDSAVYRPGKLDVK---TKEL 60
Query: 211 I 211
+
Sbjct: 61 M 61
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling
protein; HET: FMN; 2.63A {Pseudomonas putida}
Length = 162
Score = 28.4 bits (64), Expect = 4.5
Identities = 4/26 (15%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 455 EEVPQSIVITSRQQYGLPEDAIVYCN 480
+ IV+ ++ ++Y N
Sbjct: 32 DASNDGIVVAEKEGDDTI---LIYVN 54
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export,
transcription; 2.12A {Homo sapiens}
Length = 203
Score = 28.3 bits (63), Expect = 6.1
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 119 TFSYIISVLLLIQ--VSEAEECYNTALRLCPTHADS 152
T+ Y + + +AEE + A C +
Sbjct: 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQK 50
>1qfg_A FHUA, protein (ferric hydroxamate uptake receptor); TONB-dependent
receptor, integral outer membrane protein,
ferrichrome-iron receptor; HET: PA1 GCN KDO GMH GLC GLA
FTT DAO MYR DDQ; 2.50A {Escherichia coli} SCOP: f.4.3.3
PDB: 1qff_A* 1qjq_A* 1qkc_A* 2grx_A* 1fi1_A* 2fcp_A*
1by5_A* 1by3_A* 1fcp_A*
Length = 725
Score = 28.9 bits (65), Expect = 6.2
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 422 TMIASGQVQTSVNGIVLQNGLATNQTN--TKTATG-EEVPQSIVITSRQQ 468
T+ + + +A Q+ TKT T ++VPQSI + + ++
Sbjct: 8 TITVTAAPAPQESAWGPAATIAARQSATGTKTDTPIQKVPQSISVVTAEE 57
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
{Encephalitozoon cuniculi} PDB: 2uy1_B
Length = 493
Score = 28.7 bits (63), Expect = 7.3
Identities = 9/100 (9%), Positives = 31/100 (31%), Gaps = 9/100 (9%)
Query: 122 YIISVLLLIQVSEAEECYNTALRLCPTHADS-LNNLANIKREQGYIEEATRLYLKALEVF 180
+ + + E + L+ + D + + +++ + +Y L F
Sbjct: 20 HARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF 78
Query: 181 PEFAAAHS-------NLASVLQQQGKLTDALLHYKEAIRI 213
+ ++ + +Q ++ Y A++
Sbjct: 79 ENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 28.7 bits (64), Expect = 9.0
Identities = 14/81 (17%), Positives = 23/81 (28%), Gaps = 1/81 (1%)
Query: 124 ISVLLLIQVSEAEECYNTALRLCPTHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF 183
++ LL A + + L P LA G + + Y
Sbjct: 475 VAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN-TDEHKFYQTVWSTNDGV 533
Query: 184 AAAHSNLASVLQQQGKLTDAL 204
+A LA +G A+
Sbjct: 534 ISAAFGLARARSAEGDRVGAV 554
>1xkw_A Fe(III)-pyochelin receptor; TONB dependent receptor, membrane
protein; HET: LDA 188; 2.00A {Pseudomonas aeruginosa}
Length = 665
Score = 28.4 bits (64), Expect = 9.8
Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 5/27 (18%)
Query: 447 TNTKTATG-----EEVPQSIVITSRQQ 468
T E+PQS + ++
Sbjct: 9 PGVTTLGKVPLKPRELPQSASVIDHER 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.401
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,207,521
Number of extensions: 623022
Number of successful extensions: 2974
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1974
Number of HSP's successfully gapped: 705
Length of query: 673
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 573
Effective length of database: 3,909,693
Effective search space: 2240254089
Effective search space used: 2240254089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)