Query psy17692
Match_columns 211
No_of_seqs 263 out of 2133
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 20:32:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1495|consensus 100.0 5.1E-35 1.1E-39 253.2 8.1 141 7-160 139-330 (332)
2 COG0039 Mdh Malate/lactate deh 100.0 5.7E-34 1.2E-38 253.2 8.4 141 7-161 120-308 (313)
3 cd05290 LDH_3 A subgroup of L- 100.0 1.2E-31 2.5E-36 238.7 8.9 136 8-157 122-306 (307)
4 TIGR01763 MalateDH_bact malate 100.0 2.4E-31 5.2E-36 236.3 9.5 141 4-158 111-303 (305)
5 TIGR01771 L-LDH-NAD L-lactate 100.0 4.6E-31 9.9E-36 234.0 8.7 137 4-154 106-298 (299)
6 cd05292 LDH_2 A subgroup of L- 100.0 9.6E-31 2.1E-35 232.5 9.3 135 10-158 121-306 (308)
7 PLN00135 malate dehydrogenase 100.0 4.6E-30 9.9E-35 228.7 10.1 141 4-157 101-301 (309)
8 PTZ00082 L-lactate dehydrogena 100.0 9.5E-30 2.1E-34 227.6 10.8 140 5-158 122-318 (321)
9 TIGR01759 MalateDH-SF1 malate 100.0 5.4E-30 1.2E-34 229.4 8.3 138 7-158 131-321 (323)
10 PLN02602 lactate dehydrogenase 100.0 7E-30 1.5E-34 230.9 9.1 141 5-158 148-346 (350)
11 cd05291 HicDH_like L-2-hydroxy 100.0 1.1E-29 2.5E-34 225.1 9.4 140 4-157 110-304 (306)
12 PLN00112 malate dehydrogenase 100.0 1.1E-29 2.5E-34 235.2 8.8 149 4-165 219-425 (444)
13 TIGR01757 Malate-DH_plant mala 100.0 2.4E-29 5.2E-34 229.8 10.6 139 4-155 163-359 (387)
14 PTZ00117 malate dehydrogenase; 100.0 2.7E-29 5.9E-34 224.3 9.4 135 12-160 129-314 (319)
15 cd05294 LDH-like_MDH_nadp A la 100.0 3.3E-29 7.1E-34 222.9 9.0 138 8-159 124-308 (309)
16 cd00300 LDH_like L-lactate deh 100.0 8E-29 1.7E-33 219.5 9.7 140 4-157 108-299 (300)
17 TIGR01756 LDH_protist lactate 100.0 6.3E-29 1.4E-33 221.7 9.0 132 10-155 115-303 (313)
18 cd05293 LDH_1 A subgroup of L- 100.0 6.3E-29 1.4E-33 221.6 8.7 136 9-157 124-310 (312)
19 PRK00066 ldh L-lactate dehydro 100.0 6.8E-29 1.5E-33 221.5 8.8 141 4-158 115-311 (315)
20 cd00704 MDH Malate dehydrogena 100.0 6.8E-29 1.5E-33 222.3 8.8 135 9-157 130-319 (323)
21 TIGR01758 MDH_euk_cyt malate d 100.0 8.3E-29 1.8E-33 221.9 9.2 142 4-158 118-320 (324)
22 PRK05442 malate dehydrogenase; 100.0 5.2E-29 1.1E-33 223.4 7.7 136 8-158 133-320 (326)
23 cd01339 LDH-like_MDH L-lactate 100.0 2.2E-28 4.9E-33 216.0 10.0 133 11-157 121-299 (300)
24 cd01336 MDH_cytoplasmic_cytoso 99.9 4.5E-28 9.8E-33 217.1 8.8 140 4-157 121-321 (325)
25 TIGR01772 MDH_euk_gproteo mala 99.9 5.8E-28 1.3E-32 215.5 9.0 148 4-158 109-304 (312)
26 PRK06223 malate dehydrogenase; 99.9 1.7E-27 3.8E-32 210.3 10.9 135 10-158 124-304 (307)
27 PTZ00325 malate dehydrogenase; 99.9 5.1E-27 1.1E-31 210.1 8.4 137 16-158 140-311 (321)
28 cd01338 MDH_choloroplast_like 99.9 1.7E-26 3.8E-31 206.7 8.8 137 8-158 131-318 (322)
29 cd05295 MDH_like Malate dehydr 99.9 3.4E-26 7.4E-31 212.2 8.7 134 8-155 253-445 (452)
30 cd01337 MDH_glyoxysomal_mitoch 99.9 4.3E-26 9.4E-31 203.3 8.8 148 4-158 110-304 (310)
31 PF02866 Ldh_1_C: lactate/mala 99.9 2.1E-26 4.5E-31 188.9 5.8 115 33-158 1-168 (174)
32 PRK05086 malate dehydrogenase; 99.9 3.4E-25 7.4E-30 197.5 8.4 145 5-157 112-303 (312)
33 PLN00106 malate dehydrogenase 99.9 7.8E-27 1.7E-31 209.1 -4.1 151 13-194 147-319 (323)
34 cd00650 LDH_MDH_like NAD-depen 99.9 2.1E-24 4.5E-29 187.3 9.7 135 4-156 112-261 (263)
35 KOG1494|consensus 99.1 7.9E-10 1.7E-14 97.3 10.3 144 7-158 147-333 (345)
36 PTZ00082 L-lactate dehydrogena 99.0 1.7E-11 3.7E-16 110.0 -3.3 67 128-195 245-316 (321)
37 TIGR01763 MalateDH_bact malate 98.9 3.8E-11 8.3E-16 107.0 -3.2 67 128-195 230-301 (305)
38 TIGR01771 L-LDH-NAD L-lactate 98.9 3.7E-11 8E-16 106.8 -3.6 66 128-194 229-299 (299)
39 PTZ00117 malate dehydrogenase; 98.9 1E-10 2.3E-15 104.7 -3.3 66 128-194 239-309 (319)
40 KOG1495|consensus 98.9 9.9E-11 2.1E-15 102.5 -3.4 66 128-194 254-325 (332)
41 PLN02602 lactate dehydrogenase 98.9 1.1E-10 2.4E-15 106.1 -3.3 66 128-194 271-343 (350)
42 cd05292 LDH_2 A subgroup of L- 98.9 1E-10 2.2E-15 104.3 -3.6 66 128-194 233-303 (308)
43 PF02866 Ldh_1_C: lactate/mala 98.9 7.4E-11 1.6E-15 96.7 -4.5 77 104-194 78-165 (174)
44 cd01336 MDH_cytoplasmic_cytoso 98.9 8.9E-11 1.9E-15 105.5 -4.4 67 128-194 246-319 (325)
45 COG0039 Mdh Malate/lactate deh 98.8 1.7E-10 3.6E-15 103.3 -2.8 66 128-194 232-302 (313)
46 KOG1496|consensus 98.8 1.3E-08 2.8E-13 88.3 7.4 135 11-156 135-322 (332)
47 cd05290 LDH_3 A subgroup of L- 98.8 2.5E-10 5.5E-15 101.9 -3.8 66 128-194 234-304 (307)
48 PTZ00325 malate dehydrogenase; 98.8 3.4E-10 7.3E-15 101.8 -3.3 163 11-194 105-308 (321)
49 cd00704 MDH Malate dehydrogena 98.8 3.5E-10 7.6E-15 101.7 -3.3 66 128-194 243-317 (323)
50 cd05291 HicDH_like L-2-hydroxy 98.7 4.8E-10 1E-14 99.6 -3.5 66 128-194 232-302 (306)
51 TIGR01772 MDH_euk_gproteo mala 98.7 5.1E-10 1.1E-14 100.2 -3.4 81 100-194 208-301 (312)
52 cd00300 LDH_like L-lactate deh 98.7 5.7E-10 1.2E-14 99.1 -3.6 66 128-194 227-297 (300)
53 cd05293 LDH_1 A subgroup of L- 98.7 6.2E-10 1.3E-14 99.6 -3.4 66 128-194 237-308 (312)
54 TIGR01756 LDH_protist lactate 98.7 6.1E-10 1.3E-14 99.8 -3.5 67 128-194 227-303 (313)
55 PLN00135 malate dehydrogenase 98.7 5.5E-10 1.2E-14 99.9 -3.9 74 108-194 217-299 (309)
56 cd01338 MDH_choloroplast_like 98.7 6.3E-10 1.4E-14 100.0 -3.7 71 129-199 243-321 (322)
57 cd01339 LDH-like_MDH L-lactate 98.7 8.4E-10 1.8E-14 97.6 -3.4 66 128-194 227-297 (300)
58 PLN00106 malate dehydrogenase 98.7 4.5E-08 9.7E-13 88.2 7.5 63 92-157 254-321 (323)
59 cd05294 LDH-like_MDH_nadp A la 98.7 1.1E-09 2.4E-14 97.7 -3.2 66 128-194 233-304 (309)
60 PRK05086 malate dehydrogenase; 98.7 1.3E-09 2.9E-14 97.4 -3.2 81 100-194 209-301 (312)
61 PRK00066 ldh L-lactate dehydro 98.7 1.3E-09 2.9E-14 97.5 -3.4 66 128-194 238-308 (315)
62 cd01337 MDH_glyoxysomal_mitoch 98.6 1.7E-09 3.7E-14 96.8 -2.8 81 100-194 209-301 (310)
63 TIGR01759 MalateDH-SF1 malate 98.6 1.9E-09 4E-14 97.1 -3.2 67 128-194 243-318 (323)
64 PRK05442 malate dehydrogenase; 98.6 2.9E-09 6.2E-14 95.9 -3.6 66 128-194 243-317 (326)
65 TIGR01758 MDH_euk_cyt malate d 98.5 4.6E-09 9.9E-14 94.5 -3.8 66 128-194 243-317 (324)
66 PRK06223 malate dehydrogenase; 98.5 8.3E-09 1.8E-13 91.3 -3.3 66 128-194 231-301 (307)
67 PLN00112 malate dehydrogenase 98.3 3.7E-08 8E-13 92.1 -2.6 66 128-194 340-415 (444)
68 TIGR01757 Malate-DH_plant mala 98.3 4.4E-08 9.6E-13 90.2 -3.0 65 128-193 284-358 (387)
69 cd00650 LDH_MDH_like NAD-depen 98.3 5.9E-08 1.3E-12 84.3 -3.0 66 128-194 189-260 (263)
70 cd05295 MDH_like Malate dehydr 98.3 5.1E-08 1.1E-12 91.3 -3.8 67 128-194 372-445 (452)
71 cd05197 GH4_glycoside_hydrolas 97.5 3.6E-05 7.9E-10 71.8 1.9 63 4-87 136-211 (425)
72 cd05298 GH4_GlvA_pagL_like Gly 95.3 0.033 7.2E-07 52.3 5.8 51 92-142 324-376 (437)
73 PRK15076 alpha-galactosidase; 94.3 0.026 5.6E-07 52.9 2.1 48 4-57 140-190 (431)
74 cd05296 GH4_P_beta_glucosidase 90.8 0.12 2.6E-06 48.4 1.5 45 4-57 137-187 (419)
75 KOG1494|consensus 87.9 0.8 1.7E-05 41.2 4.4 36 159-194 294-330 (345)
76 cd05298 GH4_GlvA_pagL_like Gly 84.0 0.085 1.8E-06 49.6 -3.9 58 128-186 317-381 (437)
77 cd05297 GH4_alpha_glucosidase_ 83.7 0.55 1.2E-05 43.8 1.4 44 5-57 139-188 (423)
78 PF04423 Rad50_zn_hook: Rad50 78.0 1.8 4E-05 28.6 2.1 28 180-208 4-31 (54)
79 PF00096 zf-C2H2: Zinc finger, 71.1 1.3 2.7E-05 23.7 -0.1 11 199-209 2-12 (23)
80 COG4391 Uncharacterized protei 69.4 1.5 3.3E-05 30.3 -0.0 17 193-209 44-60 (62)
81 PF13465 zf-H2C2_2: Zinc-finge 68.9 1.7 3.7E-05 24.5 0.1 14 194-208 12-25 (26)
82 PF13894 zf-C2H2_4: C2H2-type 67.2 1.8 3.9E-05 22.7 0.0 11 199-209 2-12 (24)
83 PHA02768 hypothetical protein; 64.8 2.3 5.1E-05 28.8 0.2 12 196-208 5-16 (55)
84 smart00507 HNHc HNH nucleases. 59.8 4.6 0.0001 24.9 0.9 17 190-207 4-20 (52)
85 PF08792 A2L_zn_ribbon: A2L zi 59.5 3.1 6.7E-05 25.1 0.0 16 193-208 17-32 (33)
86 PF11239 DUF3040: Protein of u 56.0 14 0.00031 26.5 3.0 22 175-196 1-22 (82)
87 PF05443 ROS_MUCR: ROS/MUCR tr 53.5 4.5 9.7E-05 32.1 0.1 16 194-209 69-84 (132)
88 smart00531 TFIIE Transcription 51.5 7.4 0.00016 31.0 1.0 27 183-209 85-111 (147)
89 PF13878 zf-C2H2_3: zinc-finge 50.9 6.3 0.00014 24.8 0.4 14 197-210 13-26 (41)
90 COG4049 Uncharacterized protei 50.6 4.9 0.00011 27.5 -0.1 18 191-208 8-28 (65)
91 PF01927 Mut7-C: Mut7-C RNAse 49.9 5.6 0.00012 31.7 0.1 14 195-208 122-135 (147)
92 PF02892 zf-BED: BED zinc fing 46.5 6.5 0.00014 24.5 -0.0 18 193-210 12-29 (45)
93 PF13912 zf-C2H2_6: C2H2-type 43.5 7.4 0.00016 21.4 -0.1 11 199-209 3-13 (27)
94 TIGR02420 dksA RNA polymerase- 42.2 24 0.00052 26.7 2.5 25 182-206 65-89 (110)
95 PF12677 DUF3797: Domain of un 42.0 8.5 0.00018 25.4 -0.0 12 195-206 11-22 (49)
96 PF10571 UPF0547: Uncharacteri 41.9 9.9 0.00021 21.7 0.3 14 196-209 13-26 (26)
97 PF13913 zf-C2HC_2: zinc-finge 41.9 9.9 0.00021 21.3 0.3 13 197-209 2-14 (25)
98 PF15337 Vasculin: Vascular pr 41.2 35 0.00075 25.6 3.1 26 174-199 31-56 (97)
99 PF10276 zf-CHCC: Zinc-finger 40.2 9 0.0002 24.2 -0.1 13 196-208 28-40 (40)
100 PRK10778 dksA RNA polymerase-b 39.2 28 0.0006 28.2 2.6 25 182-206 96-120 (151)
101 COG1656 Uncharacterized conser 39.1 11 0.00023 31.2 0.1 18 191-208 124-141 (165)
102 PF12171 zf-C2H2_jaz: Zinc-fin 38.4 11 0.00025 20.9 0.2 11 199-209 3-13 (27)
103 smart00355 ZnF_C2H2 zinc finge 38.1 8.1 0.00018 20.1 -0.5 11 199-209 2-12 (26)
104 PF06397 Desulfoferrod_N: Desu 37.5 9.2 0.0002 23.6 -0.3 15 193-207 2-16 (36)
105 PF03480 SBP_bac_7: Bacterial 36.3 40 0.00087 29.1 3.3 56 137-195 218-281 (286)
106 PF05191 ADK_lid: Adenylate ki 36.1 11 0.00024 23.1 -0.2 11 199-209 3-13 (36)
107 COG1734 DksA DnaK suppressor p 35.9 32 0.00068 26.9 2.3 35 172-206 52-89 (120)
108 smart00614 ZnF_BED BED zinc fi 32.7 18 0.00038 23.3 0.4 15 196-210 17-31 (50)
109 PF14149 YhfH: YhfH-like prote 31.6 14 0.00031 23.0 -0.2 22 186-207 2-23 (37)
110 TIGR02098 MJ0042_CXXC MJ0042 f 31.4 17 0.00036 21.9 0.1 13 197-209 25-37 (38)
111 COG5189 SFP1 Putative transcri 31.4 16 0.00035 33.4 0.1 26 178-209 385-410 (423)
112 COG4739 Uncharacterized protei 30.8 99 0.0021 25.4 4.5 58 138-199 3-63 (182)
113 PF13717 zinc_ribbon_4: zinc-r 30.0 19 0.0004 21.9 0.1 12 197-208 25-36 (36)
114 cd00729 rubredoxin_SM Rubredox 29.8 19 0.00041 21.7 0.1 12 197-208 2-13 (34)
115 COG1486 CelF Alpha-galactosida 29.4 1.4E+02 0.0029 28.6 5.8 52 93-144 328-381 (442)
116 cd00974 DSRD Desulforedoxin (D 29.1 19 0.00042 21.4 0.1 14 195-208 2-15 (34)
117 PF01286 XPA_N: XPA protein N- 29.1 16 0.00035 22.3 -0.2 13 196-208 2-14 (34)
118 cd00350 rubredoxin_like Rubred 28.9 19 0.00041 21.3 0.1 11 198-208 2-12 (33)
119 TIGR00319 desulf_FeS4 desulfof 28.8 19 0.0004 21.4 -0.0 14 195-208 5-18 (34)
120 PF01783 Ribosomal_L32p: Ribos 28.0 16 0.00034 24.5 -0.5 30 181-210 10-39 (56)
121 TIGR02890 spore_yteA sporulati 27.6 55 0.0012 26.7 2.6 25 182-206 71-95 (159)
122 COG4957 Predicted transcriptio 27.0 24 0.00053 28.3 0.4 15 195-209 74-88 (148)
123 COG3357 Predicted transcriptio 27.0 60 0.0013 24.4 2.4 28 182-209 37-70 (97)
124 KOG0801|consensus 26.7 19 0.00041 29.9 -0.3 15 193-207 134-148 (205)
125 PHA00616 hypothetical protein 26.4 20 0.00043 23.2 -0.2 10 199-208 3-12 (44)
126 PF02132 RecR: RecR protein; 26.3 66 0.0014 20.0 2.2 25 180-205 1-25 (41)
127 COG1601 GCD7 Translation initi 24.8 82 0.0018 25.6 3.0 36 167-206 78-114 (151)
128 COG3183 Predicted restriction 24.7 36 0.00079 30.2 1.1 31 177-209 177-207 (272)
129 PF10367 Vps39_2: Vacuolar sor 24.6 44 0.00096 24.1 1.4 31 177-207 53-88 (109)
130 TIGR02986 restrict_Alw26I type 24.6 28 0.00061 32.6 0.3 27 181-207 66-92 (424)
131 smart00154 ZnF_AN1 AN1-like Zi 24.0 28 0.0006 21.6 0.1 14 194-207 6-22 (39)
132 TIGR00253 RNA_bind_YhbY putati 23.8 1.7E+02 0.0038 21.7 4.4 49 138-202 1-49 (95)
133 PRK12286 rpmF 50S ribosomal pr 23.7 18 0.00039 24.5 -0.8 29 182-210 12-40 (57)
134 PRK05452 anaerobic nitric oxid 23.5 86 0.0019 29.8 3.4 14 195-208 423-436 (479)
135 PF14164 YqzH: YqzH-like prote 23.4 1.1E+02 0.0024 21.3 3.1 21 174-194 23-43 (64)
136 PHA02978 hypothetical protein; 23.4 1E+02 0.0022 23.9 3.1 47 9-70 33-80 (135)
137 PF01430 HSP33: Hsp33 protein; 23.3 42 0.00091 29.5 1.2 29 176-208 249-277 (280)
138 cd00498 Hsp33 Heat shock prote 23.1 32 0.00069 30.3 0.4 28 175-208 244-273 (275)
139 PF12874 zf-met: Zinc-finger o 22.8 27 0.00058 18.7 -0.1 10 199-208 2-11 (25)
140 cd00085 HNHc HNH nucleases; HN 22.8 43 0.00094 20.7 0.9 15 191-206 6-20 (57)
141 TIGR00323 eIF-6 translation in 22.7 1.5E+02 0.0032 25.4 4.3 53 133-187 107-166 (215)
142 COG3433 Aryl carrier domain [S 22.6 14 0.0003 26.5 -1.6 23 21-49 18-41 (74)
143 PF04959 ARS2: Arsenite-resist 22.4 5.5 0.00012 34.1 -4.4 15 195-209 75-89 (214)
144 PF13719 zinc_ribbon_5: zinc-r 22.4 31 0.00068 21.0 0.2 14 195-208 23-36 (37)
145 PF14584 DUF4446: Protein of u 22.3 63 0.0014 26.1 2.0 13 175-187 137-149 (151)
146 PF03604 DNA_RNApol_7kD: DNA d 22.3 22 0.00047 21.3 -0.6 14 192-205 12-25 (32)
147 PRK06266 transcription initiat 22.1 54 0.0012 27.1 1.5 15 194-208 114-128 (178)
148 COG1486 CelF Alpha-galactosida 22.0 96 0.0021 29.5 3.3 31 159-189 357-387 (442)
149 COG2956 Predicted N-acetylgluc 21.3 15 0.00032 33.9 -2.1 47 159-210 311-365 (389)
150 PF09665 RE_Alw26IDE: Type II 20.9 36 0.00078 32.6 0.3 29 179-207 64-92 (511)
151 TIGR03831 YgiT_finger YgiT-typ 20.9 36 0.00078 20.8 0.2 13 196-208 31-43 (46)
152 KOG2462|consensus 20.7 35 0.00076 30.4 0.2 10 198-207 188-197 (279)
153 PF13945 NST1: Salt tolerance 20.6 39 0.00085 28.5 0.4 33 174-206 111-150 (190)
154 COG3682 Predicted transcriptio 20.4 1.2E+02 0.0025 23.9 3.0 55 135-194 66-121 (123)
155 PRK09458 pspB phage shock prot 20.4 1.1E+02 0.0024 22.0 2.7 20 176-195 35-57 (75)
156 PLN02294 cytochrome c oxidase 20.4 35 0.00075 28.4 0.1 11 199-209 143-153 (174)
157 PF09011 HMG_box_2: HMG-box do 20.3 1.1E+02 0.0023 20.9 2.6 20 176-195 45-64 (73)
158 COG0333 RpmF Ribosomal protein 20.2 68 0.0015 21.8 1.5 29 182-210 12-40 (57)
No 1
>KOG1495|consensus
Probab=100.00 E-value=5.1e-35 Score=253.19 Aligned_cols=141 Identities=31% Similarity=0.425 Sum_probs=131.5
Q ss_pred eechhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccccccccccc
Q psy17692 7 TVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRK 80 (211)
Q Consensus 7 ~~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~ 80 (211)
.|..--|++||+||||+|||||+| |.|||+||| |+|+++||++|.++ ||||+.||.||.+ +
T Consensus 139 PVDilTYv~wKLSgfP~nRViGsG--cnLDsaRFr--yLi~~~Lg~~pss~hgwIiGEHGdSsV~vWSgv---------n 205 (332)
T KOG1495|consen 139 PVDILTYVTWKLSGFPKNRVIGSG--CNLDSARFR--YLIGNRLGVHPSSCHGWIIGEHGDSSVPVWSGV---------N 205 (332)
T ss_pred chHHHHHHHHHHcCCcccceeccC--cCccHHHHH--HHHHHHhCCCcccceEEEeeccCCccceecccc---------c
Confidence 355667899999999999999999 999999999 99999999999999 9999999999999 9
Q ss_pred ccCcccccccc--------------------------------------------chhhccCCceeEeE-eecCcccccc
Q psy17692 81 NCIVPKELYCP--------------------------------------------EIEDREQDRRKPAI-HLLGHHGIEE 115 (211)
Q Consensus 81 v~g~pv~~~~~--------------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~ 115 (211)
++|+|+.++.+ ++|.+|.+++.|++ .++|.|||.+
T Consensus 206 iAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklKGyTswaIglsva~l~~ail~n~~~i~~Vst~~kg~~gI~~ 285 (332)
T KOG1495|consen 206 IAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLKGYTSWAIGLSVADLAQAILRNLRRIHPVSTMVKGLYGIDD 285 (332)
T ss_pred ccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCcCceeeeeeccccccCCCC
Confidence 99999988876 46889999999999 5999999988
Q ss_pred ceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692 116 EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160 (211)
Q Consensus 116 dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~sv 160 (211)
|||+|+||++|++|+.++++..|+++|.++|..|++.+.+++.++
T Consensus 286 dVflSlPc~l~~~Gi~~vv~~~Lt~~E~akL~kSa~tl~~~q~~l 330 (332)
T KOG1495|consen 286 DVFLSLPCLLGANGITHVVKQKLTDEEVAKLKKSAKTLLEAQKSL 330 (332)
T ss_pred ceEEecceeecCCchhhhhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988887654
No 2
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=5.7e-34 Score=253.24 Aligned_cols=141 Identities=24% Similarity=0.326 Sum_probs=130.5
Q ss_pred eechhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccccccccccc
Q psy17692 7 TVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRK 80 (211)
Q Consensus 7 ~~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~ 80 (211)
.|+..-|.+||.||||++||||+| |+|||+||| ++||+++++++++| ||||+|||+||++ +
T Consensus 120 PvD~~ty~~~k~sg~p~~rvig~g--t~LDsaR~~--~~lae~~~v~~~~V~~~ViGeHGdt~vp~~S~a---------~ 186 (313)
T COG0039 120 PVDILTYIAMKFSGFPKNRVIGSG--TVLDSARFR--TFLAEKLGVSPKDVHAYVIGEHGDTMVPLWSQA---------T 186 (313)
T ss_pred cHHHHHHHHHHhcCCCccceeccc--chHHHHHHH--HHHHHHhCCChhHceeeEeccCCCceEEeeeee---------e
Confidence 467778899999999999999999 999999999 99999999999999 9999999999999 8
Q ss_pred ccCcccccccc-----------------------------------------chhhccCCceeEeE-eecCccccccceE
Q psy17692 81 NCIVPKELYCP-----------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVF 118 (211)
Q Consensus 81 v~g~pv~~~~~-----------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~ 118 (211)
++|+|+.+++. +++++|+++++|++ +++|+||+ +|+|
T Consensus 187 v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~kG~~t~~~~A~a~a~~~~ail~d~~~vl~~s~~l~G~yg~-~dv~ 265 (313)
T COG0039 187 VGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKGAGTYYGPAAALARMVEAILRDEKRVLPVSVYLDGEYGV-EDVY 265 (313)
T ss_pred ECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHccCccchhhHHHHHHHHHHHHHcCCCceEEEEEeecCccCc-CCeE
Confidence 89988877652 46788999999999 79999998 8999
Q ss_pred eeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhcccc
Q psy17692 119 LSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLP 161 (211)
Q Consensus 119 ~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~svP 161 (211)
+|+|+++|++|+.++++..|+++|+++|..|++.+++.++++.
T Consensus 266 ~gvP~~lg~~Gv~~iie~~l~~~E~~~l~~s~~~lk~~i~~~~ 308 (313)
T COG0039 266 FGVPAVLGKNGVEEILELLLSDDEQEKLDKSAEELKKNIELVK 308 (313)
T ss_pred EEeeEEEcCCCcEEEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888876554
No 3
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=99.97 E-value=1.2e-31 Score=238.70 Aligned_cols=136 Identities=24% Similarity=0.339 Sum_probs=121.2
Q ss_pred echhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccc
Q psy17692 8 VSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKN 81 (211)
Q Consensus 8 ~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v 81 (211)
|++--+++||.||||++||||+| |.|||+||| ++||+++|+++++| ||||+|||+||++ ++
T Consensus 122 vDv~t~~~~k~sg~p~~rviG~g--t~LDs~R~~--~~la~~l~v~~~~V~~~ViGeHGds~vp~wS~~---------~v 188 (307)
T cd05290 122 LDIAVYIAATEFDYPANKVIGTG--TMLDTARLR--RIVADKYGVDPKNVTGYVLGEHGSHAFPVWSLV---------NI 188 (307)
T ss_pred HHHHHHHHHHHhCcChhheeccc--chHHHHHHH--HHHHHHhCCCcccEEEEEEecCCCceEEeeeee---------EE
Confidence 34445689999999999999999 999999999 99999999999999 9999999999999 77
Q ss_pred cCcccccccc------------------------------------------chhhccCCceeEeE-eecCccccccceE
Q psy17692 82 CIVPKELYCP------------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVF 118 (211)
Q Consensus 82 ~g~pv~~~~~------------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~ 118 (211)
+|.|+..|++ +++..|+++++|++ +++|+||+ +|+|
T Consensus 189 ~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~KG~t~~~ia~a~~~ii~ail~d~~~v~~vsv~~~G~yg~-~~v~ 267 (307)
T cd05290 189 AGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRKGWTNAGIAKSASRLIKAILLDERSILPVCTLLSGEYGL-SDVA 267 (307)
T ss_pred CCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHccCeehHHHHHHHHHHHHHHHhCCCeEEEEEEeeCCccCC-CCEE
Confidence 7777644320 45778889999998 68999997 8999
Q ss_pred eeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhh
Q psy17692 119 LSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157 (211)
Q Consensus 119 ~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~ 157 (211)
+|+||+||++|+.+++++.|+++|++.|..|++.+++.+
T Consensus 268 ~svP~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~i~~~~ 306 (307)
T cd05290 268 LSLPTVIGAKGIERVLEIPLDEWELEKLHKSAKAIRETI 306 (307)
T ss_pred EEEEEEEeCCCceEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998887653
No 4
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=99.97 E-value=2.4e-31 Score=236.32 Aligned_cols=141 Identities=21% Similarity=0.300 Sum_probs=125.4
Q ss_pred CCceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccc
Q psy17692 4 SGKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYR 71 (211)
Q Consensus 4 ~~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~ 71 (211)
+++.+..+| +.+||.+|||++||||+| |.|||+||+ ++||+++++++++| ||||+|+|+||++
T Consensus 111 ~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g--~~lds~R~~--~~la~~l~v~~~~v~~~v~GeHg~s~~~~wS~~- 185 (305)
T TIGR01763 111 NPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQA--GVLDSARFR--TFIAMELGVSVQDVTACVLGGHGDAMVPLVRYS- 185 (305)
T ss_pred CeEEEEecCcHHHHHHHHHHHHCcCHHHEEEec--cchHHHHHH--HHHHHHhCcCHHHeeeeEEecCCCcEEeeeeee-
Confidence 344555555 578999999999999999 999999999 99999999999999 9999999999999
Q ss_pred cccccccccccCcccccccc---------------------------------------chhhccCCceeEeE-eecCcc
Q psy17692 72 PERTVSSRKNCIVPKELYCP---------------------------------------EIEDREQDRRKPAI-HLLGHH 111 (211)
Q Consensus 72 i~~~il~~~v~g~pv~~~~~---------------------------------------~~i~~d~~~i~~vs-~l~G~y 111 (211)
+++|+|+.++.. ++|..|+++++|++ +++|+|
T Consensus 186 --------~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~~~~~i~~ai~~~~~~v~~~s~~~~~~y 257 (305)
T TIGR01763 186 --------TVAGIPVADLISAERIAEIVERTRKGGGEIVNLLKQGSAYYAPAASVVEMVEAILKDRKRVLPCAAYLDGQY 257 (305)
T ss_pred --------EECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhCCCCeEEEEEEEecccC
Confidence 788888755432 46778888999999 689999
Q ss_pred ccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhc
Q psy17692 112 GIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFL 158 (211)
Q Consensus 112 Gi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~ 158 (211)
|+ +|+|+|+||+||++|+.+++++.|+++|++.|..|++.+++.++
T Consensus 258 g~-~~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~s~~~i~~~~~ 303 (305)
T TIGR01763 258 GI-DGIYVGVPVILGKNGVEHIYELKLDQSELALLNKSAKIVDENCK 303 (305)
T ss_pred CC-CceEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99 89999999999999999999999999999999999988877654
No 5
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=99.97 E-value=4.6e-31 Score=234.04 Aligned_cols=137 Identities=25% Similarity=0.354 Sum_probs=122.2
Q ss_pred CCceechhhH------HHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccc
Q psy17692 4 SGKTVSSRKN------CIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYR 71 (211)
Q Consensus 4 ~~~~~~~~~~------~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~ 71 (211)
+|+.+..+|+ .+++.+|||++||||+| |.|||+||+ ++||+++++++++| |||++|+|+||++
T Consensus 106 ~~~vivvsNP~d~~t~~~~~~sg~p~~~viG~g--t~LDs~R~~--~~la~~l~v~~~~V~~~v~GeHG~s~vp~~S~~- 180 (299)
T TIGR01771 106 DGIFLVATNPVDILTYVAWKLSGFPKNRVIGSG--TVLDTARLR--YLLAEKLGVDPQSVHAYIIGEHGDSEVPVWSSA- 180 (299)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCHHHEEecc--chHHHHHHH--HHHHHHhCcCcCeEEEEEEecCCCceeeceeee-
Confidence 4555555555 78999999999999999 999999999 99999999999999 9999999999999
Q ss_pred cccccccccccCccccccc-------c------------------------------------chhhccCCceeEeE-ee
Q psy17692 72 PERTVSSRKNCIVPKELYC-------P------------------------------------EIEDREQDRRKPAI-HL 107 (211)
Q Consensus 72 i~~~il~~~v~g~pv~~~~-------~------------------------------------~~i~~d~~~i~~vs-~l 107 (211)
+++|+|+..+. + +++++|+++++|++ ++
T Consensus 181 --------~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kG~t~~~~a~a~~~~i~ail~d~~~v~~~s~~~ 252 (299)
T TIGR01771 181 --------TIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRKGATYYGIGMAVARIVEAILHDENRVLPVSAYL 252 (299)
T ss_pred --------EECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcCCeeeHHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 77777765442 1 56788999999998 79
Q ss_pred cCccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHH
Q psy17692 108 LGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 154 (211)
Q Consensus 108 ~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~ 154 (211)
+|+||+ +|+|+|+||+||++|+.+++++.|+++|++.|..|++.++
T Consensus 253 ~g~yg~-~~~~~s~P~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~ik 298 (299)
T TIGR01771 253 DGEYGI-KDVYIGVPAVLGRNGVEEIIELPLSDEEKEAFQKSAETLK 298 (299)
T ss_pred cccCCC-CCEEEEEEEEEeCCeeEEEccCCCCHHHHHHHHHHHHHHh
Confidence 999999 7999999999999999999999999999999999997765
No 6
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=99.97 E-value=9.6e-31 Score=232.49 Aligned_cols=135 Identities=27% Similarity=0.401 Sum_probs=121.8
Q ss_pred hhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccC
Q psy17692 10 SRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCI 83 (211)
Q Consensus 10 ~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g 83 (211)
.-.+.++|.+|||++||||+| |.|||+||+ ++||+++++++++| |||++|+|+||++ +++|
T Consensus 121 ~~~~~~~~~sg~p~~~viG~g--t~LDs~R~~--~~la~~~~v~~~~v~~~viGeHg~~~~~~~S~~---------~v~g 187 (308)
T cd05292 121 VLTYVAYKLSGLPPNRVIGSG--TVLDTARFR--YLLGEHLGVDPRSVHAYIIGEHGDSEVAVWSSA---------NIGG 187 (308)
T ss_pred HHHHHHHHHHCcCHHHeeccc--chhhHHHHH--HHHHHHhCCCccceeceeeccCCCcEEecceee---------eECC
Confidence 334688999999999999999 999999999 99999999999999 9999999999999 7788
Q ss_pred cccccccc--------------------------------------------chhhccCCceeEeE-eecCccccccceE
Q psy17692 84 VPKELYCP--------------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVF 118 (211)
Q Consensus 84 ~pv~~~~~--------------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~ 118 (211)
.|+..+.. +++..|+++++|++ +++|+||+ +|+|
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~kg~t~~~~a~a~~~i~~ail~~~~~v~~~s~~~~g~yg~-~~~~ 266 (308)
T cd05292 188 VPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERKGATYYAIGLALARIVEAILRDENSVLTVSSLLDGQYGI-KDVA 266 (308)
T ss_pred EEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHcCCCcEEEEEEEEcccCCC-CCEE
Confidence 77754311 46788899999999 68999999 8999
Q ss_pred eeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhc
Q psy17692 119 LSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFL 158 (211)
Q Consensus 119 ~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~ 158 (211)
+|+||+||++|+.+++++.|+++|++.|..|++.+++.++
T Consensus 267 ~s~P~~ig~~Gv~~i~~~~L~~~E~~~l~~s~~~i~~~~~ 306 (308)
T cd05292 267 LSLPCIVGRSGVERVLPPPLSEEEEEALRASAEVLKEAIE 306 (308)
T ss_pred EEEEEEEeCCceEEecCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988887654
No 7
>PLN00135 malate dehydrogenase
Probab=99.96 E-value=4.6e-30 Score=228.70 Aligned_cols=141 Identities=11% Similarity=0.027 Sum_probs=122.7
Q ss_pred CCceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeecccc
Q psy17692 4 SGKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELY 70 (211)
Q Consensus 4 ~~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~ 70 (211)
+|+.+..+| +.+++.+|||++|+||+| |.|||+||| ++||+++++++++| |||++|+|+||++
T Consensus 101 ~aivivvsNPvDv~t~~~~~~sg~~~~~vig~g--t~LDsaR~r--~~la~~l~v~~~~V~~~~VlGeHG~s~v~~~S~a 176 (309)
T PLN00135 101 DCKVLVVANPANTNALILKEFAPSIPEKNITCL--TRLDHNRAL--GQISERLGVPVSDVKNVIIWGNHSSTQYPDVNHA 176 (309)
T ss_pred CeEEEEeCCcHHHHHHHHHHHcCCCCccEEEee--ehHHHHHHH--HHHHHHhCcChhhceeeEEEEcCCCceeeccccc
Confidence 445555555 569999999999999999 999999999 99999999999999 9999999999999
Q ss_pred ccccccccccc----cCcccccccc----------------------------------------chhhc--cCCceeEe
Q psy17692 71 RPERTVSSRKN----CIVPKELYCP----------------------------------------EIEDR--EQDRRKPA 104 (211)
Q Consensus 71 ~i~~~il~~~v----~g~pv~~~~~----------------------------------------~~i~~--d~~~i~~v 104 (211)
++ +|+|+.++.. +++.+ |+++++|+
T Consensus 177 ---------~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~kg~t~~~ia~a~~~iv~ai~~~~~~~~v~~v 247 (309)
T PLN00135 177 ---------TVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSM 247 (309)
T ss_pred ---------eEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhCCcCCeEEEE
Confidence 77 7777755421 35566 66899999
Q ss_pred E-eecCccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhh
Q psy17692 105 I-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157 (211)
Q Consensus 105 s-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~ 157 (211)
+ +++|+||+.+|+|+|+||++|+.|+..++++.|+++|+++|..|++.+++..
T Consensus 248 sv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l~L~~~E~~~l~~S~~~lk~~~ 301 (309)
T PLN00135 248 GVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGLSIDEFSRKKMDATAKELKEEK 301 (309)
T ss_pred EEEecCccCCcCCeEEEEEEEEECCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9 6899999856999999999999999999999999999999999998777654
No 8
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=99.96 E-value=9.5e-30 Score=227.61 Aligned_cols=140 Identities=17% Similarity=0.267 Sum_probs=123.8
Q ss_pred Cceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccc
Q psy17692 5 GKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRP 72 (211)
Q Consensus 5 ~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i 72 (211)
+..++.+| +.+++.+|+|++||||+| |.|||+||+ ++||+++++++++| |||++|||+||++
T Consensus 122 a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg--t~lds~R~~--~~la~~l~v~~~~v~~~viGeHg~s~v~~~S~~-- 195 (321)
T PTZ00082 122 AFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA--GVLDSSRLR--TYIAEKLGVNPRDVHASVIGAHGDKMVPLPRYV-- 195 (321)
T ss_pred eEEEEecCcHHHHHHHHHHhcCCChhhEEEec--CcccHHHHH--HHHHHHhCCCcccceeeEEecCCCceEecceee--
Confidence 34555555 457899999999999999 999999999 99999999999999 9999999999999
Q ss_pred ccccccccccCcccccccc--------------------------------------------chhhccCCceeEeE-ee
Q psy17692 73 ERTVSSRKNCIVPKELYCP--------------------------------------------EIEDREQDRRKPAI-HL 107 (211)
Q Consensus 73 ~~~il~~~v~g~pv~~~~~--------------------------------------------~~i~~d~~~i~~vs-~l 107 (211)
+++|.|+.++++ ++|++|+++++|++ ++
T Consensus 196 -------~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~gkg~t~~~ia~a~~~i~~ail~d~~~v~~vs~~~ 268 (321)
T PTZ00082 196 -------TVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLLGTGSAYFAPAAAAIEMAEAYLKDKKRVLPCSAYL 268 (321)
T ss_pred -------EECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 777776654420 56788899999999 68
Q ss_pred cCccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhc
Q psy17692 108 LGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFL 158 (211)
Q Consensus 108 ~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~ 158 (211)
+|+||+ +|||+|+|++||++|+.+++++.|+++|++.|..|++.+++.++
T Consensus 269 ~g~yg~-~~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~sa~~i~~~~~ 318 (321)
T PTZ00082 269 EGQYGH-KDIYMGTPAVIGANGVEKIIELDLTPEEQKKFDESIKEVKRLEA 318 (321)
T ss_pred cccCCC-CCeEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999 89999999999999999999999999999999999988887653
No 9
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=99.96 E-value=5.4e-30 Score=229.44 Aligned_cols=138 Identities=13% Similarity=0.048 Sum_probs=121.5
Q ss_pred eechhhHHHHHHh-CCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeecccccccccccc
Q psy17692 7 TVSSRKNCIVRKE-LYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSS 78 (211)
Q Consensus 7 ~~~~~~~~~~k~s-g~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~ 78 (211)
.|++--+.+||.+ |||++||||+ |.|||+||| ++||+++|+++++| |||++|+|+||++
T Consensus 131 PvDv~t~v~~k~s~g~p~~rViG~---t~LDs~R~r--~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~-------- 197 (323)
T TIGR01759 131 PANTNALIASKNAPDIPPKNFSAM---TRLDHNRAK--YQLAAKAGVPVSDVKNVIIWGNHSNTQVPDFTHA-------- 197 (323)
T ss_pred cHHHHHHHHHHHcCCCCHHHEEEe---eHHHHHHHH--HHHHHHhCcChHHeEEeEEEecCCCceeeccccC--------
Confidence 3455567899999 9999999996 899999999 99999999999998 9999999999999
Q ss_pred ccccCcccccccc----------------------------------------chhhccC--CceeEeE-eecC-ccccc
Q psy17692 79 RKNCIVPKELYCP----------------------------------------EIEDREQ--DRRKPAI-HLLG-HHGIE 114 (211)
Q Consensus 79 ~~v~g~pv~~~~~----------------------------------------~~i~~d~--~~i~~vs-~l~G-~yGi~ 114 (211)
+++|.|+.+++. +++.+|+ ++++|++ +++| +||+.
T Consensus 198 -~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~~Yg~~ 276 (323)
T TIGR01759 198 -TVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARGASSAASAANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIP 276 (323)
T ss_pred -EECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhccCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEEeCCcccCCC
Confidence 677776655321 4678887 8999999 7999 99985
Q ss_pred cceEeeeceEEecceEEEEec-CCCCHHHHHHHHhhHHhHHhhhc
Q psy17692 115 EEVFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKEVFL 158 (211)
Q Consensus 115 ~dV~~s~P~vig~~GV~~Ive-~iLsdeE~~iL~~Sa~~l~~~~~ 158 (211)
+|+|+|+|+++|++|+.++++ +.|+++|+++|..|++.+++..+
T Consensus 277 ~~v~~s~P~~lg~~Gv~~iv~~l~L~~~E~~~l~~sa~~lk~~~~ 321 (323)
T TIGR01759 277 EGIIFSFPVTCKGDGEWEIVEGLPLDDFVRGKLDATEDELLEEKE 321 (323)
T ss_pred CCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999 99999999999999988876543
No 10
>PLN02602 lactate dehydrogenase
Probab=99.96 E-value=7e-30 Score=230.93 Aligned_cols=141 Identities=29% Similarity=0.340 Sum_probs=124.7
Q ss_pred Cceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccc
Q psy17692 5 GKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRP 72 (211)
Q Consensus 5 ~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i 72 (211)
|..+..+| +.+||.+|||++||||+| |.|||+||| ++||+++|+++++| |||++|||+||++
T Consensus 148 ~ivivvtNPvdv~t~~~~k~sg~p~~rviG~g--t~LDs~R~r--~~lA~~l~v~~~~V~~~ViGeHGds~vp~wS~~-- 221 (350)
T PLN02602 148 TILLIVSNPVDVLTYVAWKLSGFPANRVIGSG--TNLDSSRFR--FLIADHLDVNAQDVQAYIVGEHGDSSVALWSSV-- 221 (350)
T ss_pred eEEEEecCchHHHHHHHHHHhCCCHHHEEeec--chHHHHHHH--HHHHHHhCCCccceeeeEEecCCCceEeeeeee--
Confidence 44455555 568999999999999999 999999999 99999999999999 9999999999999
Q ss_pred ccccccccccCcccccccc--------------------------------------------chhhccCCceeEeE-ee
Q psy17692 73 ERTVSSRKNCIVPKELYCP--------------------------------------------EIEDREQDRRKPAI-HL 107 (211)
Q Consensus 73 ~~~il~~~v~g~pv~~~~~--------------------------------------------~~i~~d~~~i~~vs-~l 107 (211)
+++|.|+..|+. +++++|+++++|++ ++
T Consensus 222 -------~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~KG~t~~gia~a~a~ii~ail~d~~~v~~vsv~~ 294 (350)
T PLN02602 222 -------SVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLKGYTSWAIGYSVASLVRSLLRDQRRIHPVSVLA 294 (350)
T ss_pred -------eECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 788877755311 46788999999999 68
Q ss_pred cCcccc-ccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhc
Q psy17692 108 LGHHGI-EEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFL 158 (211)
Q Consensus 108 ~G~yGi-~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~ 158 (211)
+|+||+ .+|||+|+|++||++|+.+++++.|+++|++.|..|++.+++...
T Consensus 295 ~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l~L~~~E~~~l~~sa~~l~~~~~ 346 (350)
T PLN02602 295 KGFHGIDEGDVFLSLPAQLGRNGVLGVVNVHLTDEEAERLRKSAKTLWEVQS 346 (350)
T ss_pred ccccCCCCCCcEEEEEEEEeCCeeEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999998 269999999999999999999999999999999999988887654
No 11
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=99.96 E-value=1.1e-29 Score=225.08 Aligned_cols=140 Identities=24% Similarity=0.312 Sum_probs=123.1
Q ss_pred CCceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccc
Q psy17692 4 SGKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYR 71 (211)
Q Consensus 4 ~~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~ 71 (211)
+++.+..+| +.++|.+||||+||||+| |.|||+||+ ++||+++++++++| +||++|+|+||++
T Consensus 110 ~~~vivvsNP~d~~~~~~~~~~g~p~~~v~g~g--t~LDs~R~~--~~la~~l~v~~~~v~~~V~G~Hg~s~~~~~S~~- 184 (306)
T cd05291 110 DGIFLVASNPVDVITYVVQKLSGLPKNRVIGTG--TSLDTARLR--RALAEKLNVDPRSVHAYVLGEHGDSQFVAWSTV- 184 (306)
T ss_pred CeEEEEecChHHHHHHHHHHHhCcCHHHEeecc--chHHHHHHH--HHHHHHHCCCcccceEEEEecCCCceeecceee-
Confidence 344555555 568999999999999999 999999999 99999999999999 9999999999999
Q ss_pred cccccccccccCcccccccc------------------------------------------chhhccCCceeEeE-eec
Q psy17692 72 PERTVSSRKNCIVPKELYCP------------------------------------------EIEDREQDRRKPAI-HLL 108 (211)
Q Consensus 72 i~~~il~~~v~g~pv~~~~~------------------------------------------~~i~~d~~~i~~vs-~l~ 108 (211)
+++|.|+..++. +++.+|+++++|++ +++
T Consensus 185 --------~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~kg~t~~~~a~a~~~~~~ail~~~~~v~~~s~~~~ 256 (306)
T cd05291 185 --------TVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGKGATYYGIATALARIVKAILNDENAILPVSAYLD 256 (306)
T ss_pred --------EEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHcCCCEEEEEEEEec
Confidence 777777754321 45788889999999 689
Q ss_pred CccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhh
Q psy17692 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157 (211)
Q Consensus 109 G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~ 157 (211)
|+||+ +|+|+|+|++||++|+.+++++.|+++|++.|..|++.+++.+
T Consensus 257 g~yg~-~~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~s~~~l~~~~ 304 (306)
T cd05291 257 GEYGE-KDVYIGVPAIIGRNGVEEVIELDLTEEEQEKFEKSADIIKENI 304 (306)
T ss_pred cccCC-CCEEEEEEEEEeCCCEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 99997 8999999999999999999999999999999999998887654
No 12
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=99.96 E-value=1.1e-29 Score=235.17 Aligned_cols=149 Identities=13% Similarity=0.068 Sum_probs=126.3
Q ss_pred CCceechhhH------HHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeecccc
Q psy17692 4 SGKTVSSRKN------CIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELY 70 (211)
Q Consensus 4 ~~~~~~~~~~------~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~ 70 (211)
+|+.+.++|+ .+||.+|+||+||||+| |.|||+||| ++||+++|+++++| |||++|||+||++
T Consensus 219 ~~ivIVVsNPvDv~t~v~~k~sg~~~~rViGtg--T~LDsaR~r--~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a 294 (444)
T PLN00112 219 NVKVIVVGNPCNTNALICLKNAPNIPAKNFHAL--TRLDENRAK--CQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNA 294 (444)
T ss_pred CeEEEEcCCcHHHHHHHHHHHcCCCCcceEEee--ccHHHHHHH--HHHHHHhCcCHHHcccceEEecCCCceeecccee
Confidence 5666666665 79999999999999999 999999999 99999999999988 9999999999999
Q ss_pred ccccccccccccCcccccccc----------------------------------------chhh--ccCCceeEeE-ee
Q psy17692 71 RPERTVSSRKNCIVPKELYCP----------------------------------------EIED--REQDRRKPAI-HL 107 (211)
Q Consensus 71 ~i~~~il~~~v~g~pv~~~~~----------------------------------------~~i~--~d~~~i~~vs-~l 107 (211)
+++|+|+.++.. .++. .|+++++|++ ++
T Consensus 295 ---------~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~~kG~t~~~s~a~ai~~~I~ail~~~d~~~vlpvsv~l 365 (444)
T PLN00112 295 ---------KINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYT 365 (444)
T ss_pred ---------EECCccHHHhhccccchHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEEe
Confidence 777877755432 1233 7889999999 68
Q ss_pred cC-ccccccceEeeeceEEecceEEEEe-cCCCCHHHHHHHHhhHHhHHhhhcccceeec
Q psy17692 108 LG-HHGIEEEVFLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAIKEVFLSLPCVMA 165 (211)
Q Consensus 108 ~G-~yGi~~dV~~s~P~vig~~GV~~Iv-e~iLsdeE~~iL~~Sa~~l~~~~~svP~vlg 165 (211)
+| +||+.+|+|+|+||+||++|+.+++ ++.|+++|++.|..|++.+..-.+-+-..+|
T Consensus 366 ~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el~L~~~E~~~l~~Sa~~L~~e~~~~~~~~~ 425 (444)
T PLN00112 366 DGNPYGIAEGLVFSMPCRSKGDGDYEIVKDVEIDDYLRERIKKSEAELLAEKRCVAHLTG 425 (444)
T ss_pred CCcccCCCCCeEEEeEEEEeCCeeEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99 5997679999999999999999999 7999999999999999776554443333444
No 13
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=99.96 E-value=2.4e-29 Score=229.77 Aligned_cols=139 Identities=12% Similarity=0.088 Sum_probs=120.3
Q ss_pred CCceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeecccc
Q psy17692 4 SGKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELY 70 (211)
Q Consensus 4 ~~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~ 70 (211)
+++.+.++| +++||.+|+||+||||+| |.|||+||| ++||+++++++++| |||++|||+||++
T Consensus 163 ~~iviVVsNPvDv~t~v~~k~sg~~~~rviG~g--T~LDsaR~r--~~LA~~l~v~~~~V~~~~V~GeHGds~vp~~S~a 238 (387)
T TIGR01757 163 NCKVLVVGNPCNTNALIAMKNAPNIPRKNFHAL--TRLDENRAK--CQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNA 238 (387)
T ss_pred CeEEEEcCCcHHHHHHHHHHHcCCCcccEEEec--chhHHHHHH--HHHHHHHCcChhHcceeEEEecCCCcEEecceee
Confidence 445555555 569999999999999999 999999999 99999999999988 9999999999999
Q ss_pred ccccccccccccCcccccccc----------------------------------------chhh--ccCCceeEeE-ee
Q psy17692 71 RPERTVSSRKNCIVPKELYCP----------------------------------------EIED--REQDRRKPAI-HL 107 (211)
Q Consensus 71 ~i~~~il~~~v~g~pv~~~~~----------------------------------------~~i~--~d~~~i~~vs-~l 107 (211)
+++|.|+.+++. .++. .|+++++|++ ++
T Consensus 239 ---------~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~KG~t~~~s~a~ai~~~i~ai~~g~d~~~il~vsv~~ 309 (387)
T TIGR01757 239 ---------KIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKWGRSSAASTAVSIADAIKSLVVPTPEGDWFSTGVYT 309 (387)
T ss_pred ---------EECCEEhHHhcccccchHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEe
Confidence 778887765531 1233 6888999999 68
Q ss_pred cCc-cccccceEeeeceEEecceEEEEe-cCCCCHHHHHHHHhhHHhHHh
Q psy17692 108 LGH-HGIEEEVFLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAIKE 155 (211)
Q Consensus 108 ~G~-yGi~~dV~~s~P~vig~~GV~~Iv-e~iLsdeE~~iL~~Sa~~l~~ 155 (211)
+|+ ||+.+|+|+|+|+++|++|+.+++ ++.|+++|+++|..|++.+.+
T Consensus 310 ~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l~L~~~E~~~l~~Sa~~L~~ 359 (387)
T TIGR01757 310 DGNPYGIAEGLVFSMPCRSKGDGDYELATDVSMDDFLRERIRKSEDELLK 359 (387)
T ss_pred CCcccCCCCCEEEEEEEEEeCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence 996 997579999999999999999997 999999999999999966643
No 14
>PTZ00117 malate dehydrogenase; Provisional
Probab=99.96 E-value=2.7e-29 Score=224.32 Aligned_cols=135 Identities=16% Similarity=0.234 Sum_probs=120.7
Q ss_pred hHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcc
Q psy17692 12 KNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVP 85 (211)
Q Consensus 12 ~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~p 85 (211)
-+.+++.+|||++||||+| |.|||+||+ ++||+++|+++++| |||++|+|+||++ +++|.|
T Consensus 129 t~~~~~~s~~p~~rviG~g--t~lds~R~~--~~la~~l~v~~~~v~~~viGeHg~~~v~~~s~~---------~v~g~p 195 (319)
T PTZ00117 129 VKVFQEKSGIPSNKICGMA--GVLDSSRFR--CNLAEKLGVSPGDVSAVVIGGHGDLMVPLPRYC---------TVNGIP 195 (319)
T ss_pred HHHHHHhhCCCcccEEEec--chHHHHHHH--HHHHHHhCCCcccceEEEeecCCCcEEeceeec---------eECCEE
Confidence 3568999999999999999 999999999 99999999999999 9999999999999 777777
Q ss_pred cccccc--------------------------------------------chhhccCCceeEeE-eecCccccccceEee
Q psy17692 86 KELYCP--------------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLS 120 (211)
Q Consensus 86 v~~~~~--------------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s 120 (211)
+.++++ +++.+|+++++|++ +++|+||+ +|+|+|
T Consensus 196 ~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~~kg~t~~~~a~a~~~~~~ail~~~~~v~~~s~~~~g~yg~-~~~~~s 274 (319)
T PTZ00117 196 LSDFVKKGAITEKEINEIIKKTRNMGGEIVKLLKKGSAFFAPAAAIVAMIEAYLKDEKRVLVCSVYLNGQYNC-KNLFVG 274 (319)
T ss_pred HHHHhhccccCHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCC-CCeEEE
Confidence 655421 45677888999999 78999999 699999
Q ss_pred eceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692 121 LPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160 (211)
Q Consensus 121 ~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~sv 160 (211)
+|++||++|+.+++++.|+++|++.|..|++.+++..+.+
T Consensus 275 ~P~~ig~~Gv~~i~~l~l~~~E~~~l~~s~~~l~~~~~~~ 314 (319)
T PTZ00117 275 VPVVIGGKGIEKVIELELNAEEKELFDKSIESIQELTQKA 314 (319)
T ss_pred EEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888766543
No 15
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=99.96 E-value=3.3e-29 Score=222.91 Aligned_cols=138 Identities=19% Similarity=0.239 Sum_probs=122.5
Q ss_pred echhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccc
Q psy17692 8 VSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKN 81 (211)
Q Consensus 8 ~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v 81 (211)
|+..-+.+||.+|||++||||+| |.|||+||+ ++||+++++++++| ||||+|||+||++ ++
T Consensus 124 vd~~t~~~~~~~g~~~~~viG~g--t~LDs~R~~--~~la~~l~v~~~~v~~~viGeHg~s~~~~~S~~---------~i 190 (309)
T cd05294 124 VDVMTYKALKESGFDKNRVFGLG--THLDSLRFK--VAIAKHFNVHISEVHTRIIGEHGDSMVPLISST---------SI 190 (309)
T ss_pred hHHHHHHHHHhcCCCHHHEeecc--chHHHHHHH--HHHHHHHCcChHHeEEEEEecCCCceEeeeeec---------EE
Confidence 44455679999999999999999 999999999 99999999999999 9999999999999 77
Q ss_pred cCcccccccc---------------------------------------chhhccCCceeEeE-eecCcc-ccccceEee
Q psy17692 82 CIVPKELYCP---------------------------------------EIEDREQDRRKPAI-HLLGHH-GIEEEVFLS 120 (211)
Q Consensus 82 ~g~pv~~~~~---------------------------------------~~i~~d~~~i~~vs-~l~G~y-Gi~~dV~~s 120 (211)
+|+|+.++.. +++..|++.++|++ +.+|+| |+ +|+++|
T Consensus 191 ~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~kg~t~~~~a~~~~~ii~ail~~~~~v~~vsv~~~g~~~~~-~~~~~s 269 (309)
T cd05294 191 GGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLKGGSEYGPASAISNLVRTIANDERRILTVSTYLEGEIDGI-RDVCIG 269 (309)
T ss_pred CCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHCCCCeEEEEEEEECCccCCC-CCeEEE
Confidence 8877755421 45778889999999 588987 99 699999
Q ss_pred eceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhcc
Q psy17692 121 LPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLS 159 (211)
Q Consensus 121 ~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~s 159 (211)
+||+||++|+..++++.|+++|++.|..|++.+++..+.
T Consensus 270 vP~~ig~~Gv~~i~~l~l~~~E~~~l~~s~~~i~~~~~~ 308 (309)
T cd05294 270 VPVKLGKNGIEEIVPIEMDDDEREAFRKSAEIVKKYTRE 308 (309)
T ss_pred eEEEEcCCccEEEeCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999888876543
No 16
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=99.95 E-value=8e-29 Score=219.46 Aligned_cols=140 Identities=28% Similarity=0.365 Sum_probs=124.2
Q ss_pred CCceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccc
Q psy17692 4 SGKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYR 71 (211)
Q Consensus 4 ~~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~ 71 (211)
+|+.++.+| +.+||.+|||++||||+| |.|||+||+ ++||+++++++++| |||++|+|+||++
T Consensus 108 ~~~viv~sNP~d~~~~~~~~~sg~~~~kviG~g--t~lDs~r~~--~~la~~l~v~~~~v~~~viGeHg~s~v~~~S~~- 182 (300)
T cd00300 108 DAIILVVSNPVDILTYVAQKLSGLPKNRVIGSG--TLLDSARFR--SLLAEKLDVDPQSVHAYVLGEHGDSQVVAWSTA- 182 (300)
T ss_pred CeEEEEccChHHHHHHHHHHHhCcCHHHEEecC--CcHHHHHHH--HHHHHHhCCCcccEEEEEEeccCCceeeeeeee-
Confidence 455555555 468999999999999999 999999999 99999999999999 9999999999999
Q ss_pred cccccccccccCcccccccc---------------------------------------chhhccCCceeEeE-eecCcc
Q psy17692 72 PERTVSSRKNCIVPKELYCP---------------------------------------EIEDREQDRRKPAI-HLLGHH 111 (211)
Q Consensus 72 i~~~il~~~v~g~pv~~~~~---------------------------------------~~i~~d~~~i~~vs-~l~G~y 111 (211)
+++|.|+.+++. +++.+|+++++|++ +++|+|
T Consensus 183 --------~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~kg~t~~~~a~a~~~~~~ai~~~~~~v~~~s~~~~g~y 254 (300)
T cd00300 183 --------TVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKGATNYGIATAIADIVKSILLDERRVLPVSAVQEGQY 254 (300)
T ss_pred --------EECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHcCCCeEEEEEEEecCcc
Confidence 788888765431 45777889999999 689999
Q ss_pred ccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhh
Q psy17692 112 GIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157 (211)
Q Consensus 112 Gi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~ 157 (211)
|. +|+|+|+|+++|++|+.+++++.|+++|++.|..|++.+++.+
T Consensus 255 g~-~~~~~s~Pv~ig~~Gi~~i~~l~L~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd00300 255 GI-EDVALSVPAVVGREGVVRILEIPLTEDEEAKLQKSAEALKEVL 299 (300)
T ss_pred CC-CCEEEEEEEEEeCCCeEEEecCCCCHHHHHHHHHHHHHHHHHh
Confidence 97 8999999999999999999999999999999999998877653
No 17
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=99.95 E-value=6.3e-29 Score=221.72 Aligned_cols=132 Identities=16% Similarity=0.193 Sum_probs=112.2
Q ss_pred hhhHHH-HHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccccccccccccccc
Q psy17692 10 SRKNCI-VRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSRKN 81 (211)
Q Consensus 10 ~~~~~~-~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~~v 81 (211)
.-.+++ ++.+|||++ +||+| |.|||+||| ++||++++++|++| |||++|||+||++ ++
T Consensus 115 v~t~v~~~~~sg~p~~-vig~g--t~LDsaR~r--~~la~~l~v~~~~V~~~~V~GeHG~s~vp~~S~~---------~V 180 (313)
T TIGR01756 115 TNCLVAMLHAPKLSAE-NFSSL--CMLDHNRAV--SRIASKLKVPVDHIYHVVVWGNHAESMVADLTHA---------EF 180 (313)
T ss_pred HHHHHHHHHcCCCCHH-HEEec--ccHHHHHHH--HHHHHHhCcChhheeeeEEEECCCCceeeccccc---------EE
Confidence 334567 599999999 99999 999999999 99999999999999 9999999999999 55
Q ss_pred --cCcccccc--------------------------------cc---------chhhc--cCCceeEeE-eec-C-cccc
Q psy17692 82 --CIVPKELY--------------------------------CP---------EIEDR--EQDRRKPAI-HLL-G-HHGI 113 (211)
Q Consensus 82 --~g~pv~~~--------------------------------~~---------~~i~~--d~~~i~~vs-~l~-G-~yGi 113 (211)
+|.|+..+ .+ +++.+ ++++++|++ +++ | +||+
T Consensus 181 ~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~~a~ai~~iv~ail~~~~~~~i~pvsv~l~~~g~YGi 260 (313)
T TIGR01756 181 TKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWLFGTRPGEVLSMGIPVPEGNPYGI 260 (313)
T ss_pred ecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHHHhcCCCCCeEEEEEEEecCCCccCC
Confidence 66553221 10 45677 556999999 475 3 9999
Q ss_pred ccceEeeeceEEecceEEEEec-CCCCHHHHHHHHhhHHhHHh
Q psy17692 114 EEEVFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKE 155 (211)
Q Consensus 114 ~~dV~~s~P~vig~~GV~~Ive-~iLsdeE~~iL~~Sa~~l~~ 155 (211)
.+|+|+|+||+||++|+.++++ +.|+++|+++|..|++.++.
T Consensus 261 ~~~v~~s~P~vig~~Gv~~ive~l~L~~~E~~~l~~Sa~~l~~ 303 (313)
T TIGR01756 261 KPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQTEKDLFE 303 (313)
T ss_pred CCCEEEEEEEEEeCCceEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence 5599999999999999999999 99999999999999966643
No 18
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=99.95 E-value=6.3e-29 Score=221.58 Aligned_cols=136 Identities=33% Similarity=0.462 Sum_probs=121.8
Q ss_pred chhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccccccccccccc
Q psy17692 9 SSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNC 82 (211)
Q Consensus 9 ~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~ 82 (211)
+..-+.+||.+|||++||||+| |.||++||+ ++||+++++++++| |||++|||+||++ +++
T Consensus 124 d~~t~~~~k~sg~p~~~viG~g--t~Ld~~R~~--~~la~~l~v~~~~v~~~v~GeHG~s~vp~~S~~---------~i~ 190 (312)
T cd05293 124 DIMTYVAWKLSGLPKHRVIGSG--CNLDSARFR--YLIAERLGVAPSSVHGWIIGEHGDSSVPVWSGV---------NVA 190 (312)
T ss_pred HHHHHHHHHHhCCCHHHEEecC--chHHHHHHH--HHHHHHhCCChhhEEEEEeecCCCCccccceec---------eEC
Confidence 3444678999999999999999 999999999 99999999999999 9999999999999 778
Q ss_pred Ccccccccc--------------------------------------------chhhccCCceeEeE-eecCccccccce
Q psy17692 83 IVPKELYCP--------------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEV 117 (211)
Q Consensus 83 g~pv~~~~~--------------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV 117 (211)
|.|+.+|+. +++.+|+++++|++ +++|+||+.+|+
T Consensus 191 g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~a~a~~~ii~ail~d~~~~~~vsv~~~g~yg~~~d~ 270 (312)
T cd05293 191 GVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLVDAILRNTGRVHSVSTLVKGLHGIEDEV 270 (312)
T ss_pred CEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHcCCCeEEEEEEEeCCccCCCCCe
Confidence 887655530 45777888999999 689999996799
Q ss_pred EeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhh
Q psy17692 118 FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157 (211)
Q Consensus 118 ~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~ 157 (211)
++|+||+||++|+.+++++.|+++|++.|..|++.+++..
T Consensus 271 ~~svP~~ig~~Gi~~i~~l~L~~~E~~~l~~s~~~i~~~~ 310 (312)
T cd05293 271 FLSLPCILGENGITHVIKQPLTEEEQEKLQKSADTLWEVQ 310 (312)
T ss_pred EEEEeEEEeCCceEEEecCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998887654
No 19
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=99.95 E-value=6.8e-29 Score=221.53 Aligned_cols=141 Identities=25% Similarity=0.351 Sum_probs=124.1
Q ss_pred CCceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccc
Q psy17692 4 SGKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYR 71 (211)
Q Consensus 4 ~~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~ 71 (211)
+|+.++.+| +.++|.+|||++||||+| |.|||+||+ ++||+++|+++++| |||++|+|+||++
T Consensus 115 ~~~vivvsNP~d~~~~~~~k~sg~p~~~viG~g--t~LDs~R~~--~~la~~l~v~~~~V~~~viGeHG~s~v~~~S~~- 189 (315)
T PRK00066 115 DGIFLVASNPVDILTYATWKLSGFPKERVIGSG--TSLDSARFR--YMLSEKLDVDPRSVHAYIIGEHGDTEFPVWSHA- 189 (315)
T ss_pred CeEEEEccCcHHHHHHHHHHHhCCCHHHEeecC--chHHHHHHH--HHHHHHhCCCcccEEEEEEecCCCcceecceec-
Confidence 345555555 568999999999999999 999999999 99999999999999 9999999999999
Q ss_pred cccccccccccCcccccccc-------------------------------------------chhhccCCceeEeE-ee
Q psy17692 72 PERTVSSRKNCIVPKELYCP-------------------------------------------EIEDREQDRRKPAI-HL 107 (211)
Q Consensus 72 i~~~il~~~v~g~pv~~~~~-------------------------------------------~~i~~d~~~i~~vs-~l 107 (211)
+++|.|+.+++. +++.+|++.++|++ +.
T Consensus 190 --------~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kg~t~~~~a~~~~~i~~ail~~~~~v~~~sv~~ 261 (315)
T PRK00066 190 --------NVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKKGATYYGIAMALARITKAILNNENAVLPVSAYL 261 (315)
T ss_pred --------eECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhcCCeehHHHHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence 777777654420 45777889999999 68
Q ss_pred cCccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhc
Q psy17692 108 LGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFL 158 (211)
Q Consensus 108 ~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~ 158 (211)
+|+||+ +|+|+|+||++|++|+.+++++.|+++|++.|..|++.+++.++
T Consensus 262 ~g~yg~-~~v~~S~Pv~ig~~Gv~~i~~l~L~~~E~~~L~~s~~~l~~~~~ 311 (315)
T PRK00066 262 EGQYGE-EDVYIGVPAVVNRNGIREIVELPLNDDEKQKFAHSADVLKEIMD 311 (315)
T ss_pred ccccCC-CCEEEEeEEEEeCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999997 89999999999999999999999999999999999988877655
No 20
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=99.95 E-value=6.8e-29 Score=222.34 Aligned_cols=135 Identities=12% Similarity=0.038 Sum_probs=118.0
Q ss_pred chhhHHHHHHhC-CCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeecccccccccccccc
Q psy17692 9 SSRKNCIVRKEL-YRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSRK 80 (211)
Q Consensus 9 ~~~~~~~~k~sg-~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~~ 80 (211)
++-.+.+||.+| ||++||||+ |.|||+||| ++||++++++|++| |||++|+|+||++ +
T Consensus 130 D~~t~~~~k~sg~~p~~~vig~---t~LDs~R~r--~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~---------~ 195 (323)
T cd00704 130 NTNALIALKNAPNLPPKNFTAL---TRLDHNRAK--AQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNA---------V 195 (323)
T ss_pred HHHHHHHHHHcCCCCHHHEEEe---eHHHHHHHH--HHHHHHhCcCHHHceeeeEEecccCceeeccccc---------e
Confidence 333467999999 599999977 899999999 99999999999988 9999999999999 7
Q ss_pred ccCcccccccc-------------------------------------------chhhccCC--ceeEeE-eecCcc-cc
Q psy17692 81 NCIVPKELYCP-------------------------------------------EIEDREQD--RRKPAI-HLLGHH-GI 113 (211)
Q Consensus 81 v~g~pv~~~~~-------------------------------------------~~i~~d~~--~i~~vs-~l~G~y-Gi 113 (211)
++|.|+..+++ +++.+|++ +++|++ +++|+| |+
T Consensus 196 v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~kg~t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~y~gi 275 (323)
T cd00704 196 VYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKRGASSAASAAKAIADHVKDWLFGTPPGEIVSMGVYSPGNPYGI 275 (323)
T ss_pred ecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhccCcchhHHHHHHHHHHHHHHHhCCCCCcEEEEEEEeCCccCCC
Confidence 77776644421 46788888 999998 799999 99
Q ss_pred ccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhh
Q psy17692 114 EEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157 (211)
Q Consensus 114 ~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~ 157 (211)
.+|+|+|+|++||++|+..++++.|+++|+++|..|++.+++..
T Consensus 276 ~~~v~~s~P~~ig~~Gv~~v~~l~L~~~E~~~l~~s~~~l~~~~ 319 (323)
T cd00704 276 PPGIVFSFPCTCKGGGWHVVEDLKLNDWLREKLKATEEELIEEK 319 (323)
T ss_pred CCceEEEEEEEEcCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999999999997776543
No 21
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=99.95 E-value=8.3e-29 Score=221.86 Aligned_cols=142 Identities=11% Similarity=0.001 Sum_probs=120.9
Q ss_pred CCceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeecccc
Q psy17692 4 SGKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELY 70 (211)
Q Consensus 4 ~~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~ 70 (211)
+|+.+..+| +++||.+|++|+||||+| |.|||+||| ++||+++++++++| |||++|+|+||++
T Consensus 118 ~~iiivvsNPvDv~t~v~~~~sg~~~~~vig~g--t~LDs~R~r--~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~ 193 (324)
T TIGR01758 118 DCKVLVVGNPANTNALVLSNYAPSIPPKNFSAL--TRLDHNRAL--AQVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHA 193 (324)
T ss_pred CeEEEEeCCcHHHHHHHHHHHcCCCCcceEEEe--eehHHHHHH--HHHHHHhCCChhhceEeEEEECCCCCcccccccc
Confidence 455666666 459999999999999999 999999999 99999999999988 9999999999999
Q ss_pred cccccccccccc-C---cccccccc----------------------------------------chhh--ccCCceeEe
Q psy17692 71 RPERTVSSRKNC-I---VPKELYCP----------------------------------------EIED--REQDRRKPA 104 (211)
Q Consensus 71 ~i~~~il~~~v~-g---~pv~~~~~----------------------------------------~~i~--~d~~~i~~v 104 (211)
+++ | .|+.+++. +++. .|+++++|+
T Consensus 194 ---------~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~~t~~~ia~~~~~i~~ai~~~~~~~~i~~v 264 (324)
T TIGR01758 194 ---------TVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRARKLSSALSAAKAAVDQMHDWVLGTPEGTFVSM 264 (324)
T ss_pred ---------eecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhccCCCHHHHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 666 7 66644321 2345 678899999
Q ss_pred E-eecCc-cccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhc
Q psy17692 105 I-HLLGH-HGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFL 158 (211)
Q Consensus 105 s-~l~G~-yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~ 158 (211)
| +++|+ ||+.+|+|+|+|+++|+.|+..+.++.|+++|+++|..|++.+++..+
T Consensus 265 s~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el~L~~~E~~~l~~s~~~lk~~~~ 320 (324)
T TIGR01758 265 GVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGLCVDDSSRKKLALTAKELEEERD 320 (324)
T ss_pred EeecCCcccCCCCceEEEEEEEEcCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9 68999 999569999999999977777777899999999999999988876553
No 22
>PRK05442 malate dehydrogenase; Provisional
Probab=99.95 E-value=5.2e-29 Score=223.35 Aligned_cols=136 Identities=11% Similarity=0.020 Sum_probs=119.4
Q ss_pred echhhHHHHHHh-CCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccccccccccccc
Q psy17692 8 VSSRKNCIVRKE-LYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSR 79 (211)
Q Consensus 8 ~~~~~~~~~k~s-g~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~ 79 (211)
|++-.+++||.+ |||++||||+ |.|||+||| ++||+++++++++| |||++|+|+||++
T Consensus 133 vDv~t~v~~k~s~g~p~~rViG~---t~LDs~R~r--~~la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~--------- 198 (326)
T PRK05442 133 ANTNALIAMKNAPDLPAENFTAM---TRLDHNRAL--SQLAAKAGVPVADIKKMTVWGNHSATQYPDFRHA--------- 198 (326)
T ss_pred hHHHHHHHHHHcCCCCHHHEEee---eHHHHHHHH--HHHHHHhCcChHHeEEeEEEECCcCceeeccccC---------
Confidence 445556799999 9999999999 899999999 99999999999988 9999999999999
Q ss_pred cccCcccccccc----------------------------------------chhhcc--CCceeEeE-eecCccccccc
Q psy17692 80 KNCIVPKELYCP----------------------------------------EIEDRE--QDRRKPAI-HLLGHHGIEEE 116 (211)
Q Consensus 80 ~v~g~pv~~~~~----------------------------------------~~i~~d--~~~i~~vs-~l~G~yGi~~d 116 (211)
+++|.|+.+++. +++.+| +++++|++ +++|+||+.+|
T Consensus 199 ~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~~~a~~~~~~iv~ail~~~~~~~i~~~sv~~~g~ygi~~~ 278 (326)
T PRK05442 199 TIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEARGASSAASAANAAIDHVRDWVLGTPEGDWVSMGVPSDGSYGIPEG 278 (326)
T ss_pred EECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCcCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCccCCcCC
Confidence 777777755431 356778 78999999 58999999669
Q ss_pred eEeeeceEEecceEEEEec-CCCCHHHHHHHHhhHHhHHhhhc
Q psy17692 117 VFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKEVFL 158 (211)
Q Consensus 117 V~~s~P~vig~~GV~~Ive-~iLsdeE~~iL~~Sa~~l~~~~~ 158 (211)
+|+|+|+++| +|+.+++. +.|+++|+++|..|++.+++..+
T Consensus 279 v~~s~P~~ig-~Gv~~iv~~l~L~~~E~~~l~~s~~~l~~~~~ 320 (326)
T PRK05442 279 LIFGFPVTCE-NGEYEIVQGLEIDDFSREKIDATLAELEEERD 320 (326)
T ss_pred eEEEEEEEEc-CcEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999965 99999999999999987776654
No 23
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=99.95 E-value=2.2e-28 Score=215.99 Aligned_cols=133 Identities=22% Similarity=0.343 Sum_probs=119.8
Q ss_pred hhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCc
Q psy17692 11 RKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIV 84 (211)
Q Consensus 11 ~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~ 84 (211)
--+.+++.+||||+||||+| |.|||+||+ ++||+++++++++| |||++|+|+||.+ +++|.
T Consensus 121 ~t~~~~~~s~~~~~rviGlg--t~lds~r~~--~~la~~l~v~~~~v~~~v~G~hg~~~~~~~s~~---------~v~g~ 187 (300)
T cd01339 121 MTYVAYKASGFPRNRVIGMA--GVLDSARFR--YFIAEELGVSVKDVQAMVLGGHGDTMVPLPRYS---------TVGGI 187 (300)
T ss_pred HHHHHHHHhCCCHHHEEEec--chHHHHHHH--HHHHHHhCCCccceEEEEEeCCCCcceecceec---------EECCE
Confidence 33567999999999999999 999999999 99999999999999 9999999999999 77777
Q ss_pred ccccccc---------------------------------------chhhccCCceeEeE-eecCccccccceEeeeceE
Q psy17692 85 PKELYCP---------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCV 124 (211)
Q Consensus 85 pv~~~~~---------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~v 124 (211)
|+.++.. ++++.|++.++|++ +++|+||+ +|+|+|+|++
T Consensus 188 ~~~~~~~~~~~~~~~~~v~~~~~~ii~~k~~g~t~~~~a~~~~~i~~ail~~~~~i~~~s~~~~g~yg~-~~~~~s~P~~ 266 (300)
T cd01339 188 PLTELITKEEIDEIVERTRNGGAEIVNLLKTGSAYYAPAAAIAEMVEAILKDKKRVLPCSAYLEGEYGI-KDIFVGVPVV 266 (300)
T ss_pred EHHHhcChHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHcCCCcEEEEEEEeccccCC-CCeEEEEEEE
Confidence 7655431 45777889999999 68999999 6999999999
Q ss_pred EecceEEEEecCCCCHHHHHHHHhhHHhHHhhh
Q psy17692 125 MADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157 (211)
Q Consensus 125 ig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~ 157 (211)
||++|+.+++++.|+++|++.|..|++.+++.+
T Consensus 267 ig~~G~~~~~~l~l~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd01339 267 LGKNGVEKIIELDLTDEEKEAFDKSVESVKELI 299 (300)
T ss_pred EeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998887654
No 24
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=99.95 E-value=4.5e-28 Score=217.14 Aligned_cols=140 Identities=10% Similarity=-0.003 Sum_probs=119.4
Q ss_pred CCceechhh------HHHHHHh-CCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccc
Q psy17692 4 SGKTVSSRK------NCIVRKE-LYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKEL 69 (211)
Q Consensus 4 ~~~~~~~~~------~~~~k~s-g~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~ 69 (211)
++..+.++| +++||.+ ++|++| ||+| |.|||+||| ++||+++++++++| |||++|+|+||+
T Consensus 121 ~~iiivvsNPvD~~t~~~~k~~~~~~~~~-ig~g--t~LDs~R~r--~~la~~l~v~~~~v~~~~V~GeHG~s~~~~~S~ 195 (325)
T cd01336 121 NVKVLVVGNPANTNALILLKYAPSIPKEN-FTAL--TRLDHNRAK--SQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNH 195 (325)
T ss_pred CeEEEEecCcHHHHHHHHHHHcCCCCHHH-EEee--ehHHHHHHH--HHHHHHhCcChhhceEeEEEEcCCCCeeecccc
Confidence 344544555 5699996 777777 9999 999999999 99999999999998 999999999999
Q ss_pred ccccccccccccc----Ccccccccc----------------------------------------chhhccC--CceeE
Q psy17692 70 YRPERTVSSRKNC----IVPKELYCP----------------------------------------EIEDREQ--DRRKP 103 (211)
Q Consensus 70 ~~i~~~il~~~v~----g~pv~~~~~----------------------------------------~~i~~d~--~~i~~ 103 (211)
+ +++ |.|+.+++. +++.+|+ ++++|
T Consensus 196 ~---------~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~~~g~t~~~~a~~~~~i~~ail~~~~~~~v~~ 266 (325)
T cd01336 196 A---------TVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKARKLSSAMSAAKAICDHVHDWWFGTPEGEFVS 266 (325)
T ss_pred c---------eeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHHHccccchHHHHHHHHHHHHHHHHcCCCCCeEEE
Confidence 9 666 777644321 4567774 79999
Q ss_pred eE-eecCccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhh
Q psy17692 104 AI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157 (211)
Q Consensus 104 vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~ 157 (211)
++ +++|+||+.+|+|+|+|++||++|+.+++++.|+++|++.|..|++.+++..
T Consensus 267 vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~~L~~~E~~~l~~s~~~l~~e~ 321 (325)
T cd01336 267 MGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGLSIDDFSREKIDATAKELVEEK 321 (325)
T ss_pred EEEecCCCcCCCCceEEEEEEEEeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99 6899999966999999999999999999999999999999999998777654
No 25
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=99.95 E-value=5.8e-28 Score=215.47 Aligned_cols=148 Identities=12% Similarity=0.082 Sum_probs=119.1
Q ss_pred CCceechhhHH----------HHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCC-ceeee
Q psy17692 4 SGKTVSSRKNC----------IVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGK-SCIVR 66 (211)
Q Consensus 4 ~~~~~~~~~~~----------~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGd-s~vp~ 66 (211)
+++.+.++|++ +||.+|||++||||+| | |||+||| ++||+++++++++| |||+ +|||+
T Consensus 109 ~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g--~-LDsaR~r--~~la~~l~v~~~~v~~~ViGeHg~~s~vp~ 183 (312)
T TIGR01772 109 KAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVT--T-LDIVRAN--TFVAELKGKDPMEVNVPVIGGHSGETIIPL 183 (312)
T ss_pred CeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeee--c-chHHHHH--HHHHHHhCCCHHHeEEEEEEecCCCccccc
Confidence 45666666665 7899999999999998 7 9999999 99999999999999 9987 99999
Q ss_pred ccccccccccccc----------cccC---------cccccccc--------chhh---ccCCceeEeEeecCccccccc
Q psy17692 67 KELYRPERTVSSR----------KNCI---------VPKELYCP--------EIED---REQDRRKPAIHLLGHHGIEEE 116 (211)
Q Consensus 67 ~S~~~i~~~il~~----------~v~g---------~pv~~~~~--------~~i~---~d~~~i~~vs~l~G~yGi~~d 116 (211)
||++.+... +.+ ...| .--..|.+ ++|. +|+++++|+++++|+||+ +|
T Consensus 184 ~S~~~~~~~-~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~~~d~~~v~~~s~~~g~yg~-~~ 261 (312)
T TIGR01772 184 ISQCPGKVL-FTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRGLKGEEGVVECAYVESDGVT-EA 261 (312)
T ss_pred cccccccCC-CCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHhhCCCccEEEEEEEccCCCc-Cc
Confidence 999954211 110 0011 11112222 5666 578899998899999998 79
Q ss_pred eEeeeceEEecceEEEEecC-CCCHHHHHHHHhhHHhHHhhhc
Q psy17692 117 VFLSLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKEVFL 158 (211)
Q Consensus 117 V~~s~P~vig~~GV~~Ive~-iLsdeE~~iL~~Sa~~l~~~~~ 158 (211)
+|+|+||+||++|+.+++++ .|+++|++.|..|++.+++.+.
T Consensus 262 v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~ 304 (312)
T TIGR01772 262 TFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELKKNIK 304 (312)
T ss_pred eEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 9999999999999988876543
No 26
>PRK06223 malate dehydrogenase; Reviewed
Probab=99.95 E-value=1.7e-27 Score=210.33 Aligned_cols=135 Identities=21% Similarity=0.327 Sum_probs=119.7
Q ss_pred hhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccC
Q psy17692 10 SRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCI 83 (211)
Q Consensus 10 ~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g 83 (211)
.--+.+++.+||||+||||+| |.|||+||+ ++||+++++++++| |||++++|+||++ +++|
T Consensus 124 ~~~~~~~~~s~~~~~~viG~g--t~lds~r~~--~~la~~l~v~~~~v~~~viGehg~s~~p~~S~~---------~v~g 190 (307)
T PRK06223 124 AMTYVALKESGFPKNRVIGMA--GVLDSARFR--TFIAEELNVSVKDVTAFVLGGHGDSMVPLVRYS---------TVGG 190 (307)
T ss_pred HHHHHHHHHhCCCcccEEEeC--CCcHHHHHH--HHHHHHhCcChhhCcccEEcCCCCcceEchhhC---------EECC
Confidence 334578999999999999999 999999999 99999999999999 9999999999999 6666
Q ss_pred cccccccc---------------------------------------chhhccCCceeEeE-eecCccccccceEeeece
Q psy17692 84 VPKELYCP---------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPC 123 (211)
Q Consensus 84 ~pv~~~~~---------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~ 123 (211)
.|+.++.. +++..|++.++|++ +.+|+||+ +|+++|+||
T Consensus 191 ~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~~kg~t~~~~A~~~~~ii~ail~~~~~~~~~~v~~~g~yg~-~~~~~s~P~ 269 (307)
T PRK06223 191 IPLEDLLSKEKLDEIVERTRKGGAEIVGLLKTGSAYYAPAASIAEMVEAILKDKKRVLPCSAYLEGEYGV-KDVYVGVPV 269 (307)
T ss_pred EEHHHhCChHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHcCCCcEEEEEEEecCcCCC-CCeEEEeEE
Confidence 66643321 35667888999999 68999999 899999999
Q ss_pred EEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhc
Q psy17692 124 VMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFL 158 (211)
Q Consensus 124 vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~ 158 (211)
+||++|+..++++.|+++|++.|..|++.+++.++
T Consensus 270 ~i~~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~ 304 (307)
T PRK06223 270 KLGKNGVEKIIELELDDEEKAAFDKSVEAVKKLIE 304 (307)
T ss_pred EEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988887654
No 27
>PTZ00325 malate dehydrogenase; Provisional
Probab=99.94 E-value=5.1e-27 Score=210.14 Aligned_cols=137 Identities=13% Similarity=0.089 Sum_probs=111.1
Q ss_pred HHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCC-ceeeecccccc--cc----ccccc---
Q psy17692 16 VRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGK-SCIVRKELYRP--ER----TVSSR--- 79 (211)
Q Consensus 16 ~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGd-s~vp~~S~~~i--~~----~il~~--- 79 (211)
++.+||||+||||+| + |||+||| ++||+++|++|++| |||| +|||+||++-+ .. .+..+
T Consensus 140 ~~~sg~p~~~viG~g--~-LDs~R~r--~~la~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~g~~l~~~~~~~i~~~v~~ 214 (321)
T PTZ00325 140 KKAGVYDPRKLFGVT--T-LDVVRAR--KFVAEALGMNPYDVNVPVVGGHSGVTIVPLLSQTGLSLPEEQVEQITHRVQV 214 (321)
T ss_pred hhccCCChhheeech--h-HHHHHHH--HHHHHHhCcChhheEEEEEeecCCcccccchhccCCCCCHHHHHHHHHHHHH
Confidence 599999999999998 7 9999999 99999999999999 9999 89999998811 00 00000
Q ss_pred ----ccc---Ccccccccc--------chhhcc---CCceeEeEeecCccccccceEeeeceEEecceEEEEec-CCCCH
Q psy17692 80 ----KNC---IVPKELYCP--------EIEDRE---QDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVN-QPLTQ 140 (211)
Q Consensus 80 ----~v~---g~pv~~~~~--------~~i~~d---~~~i~~vs~l~G~yGi~~dV~~s~P~vig~~GV~~Ive-~iLsd 140 (211)
-+. |.--+.|.+ +++.+| +++++|+++++|+||+ +|+|+|+||+||++|+.++++ +.|++
T Consensus 215 ~g~~Ii~~k~~kg~t~~g~a~a~~~i~~ail~~~~~~~~v~~~~~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~~~~L~~ 293 (321)
T PTZ00325 215 GGDEVVKAKEGAGSATLSMAYAAAEWSTSVLKALRGDKGIVECAFVESDMRP-ECPFFSSPVELGKEGVERVLPIGPLNA 293 (321)
T ss_pred HHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhcCCCCCeEEEEEEecCCCC-CCeEEEEEEEEcCCeeEEEcCCCCCCH
Confidence 000 111222332 677755 8899999999999998 799999999999999999999 99999
Q ss_pred HHHHHHHhhHHhHHhhhc
Q psy17692 141 EEIEKLKKSAQAIKEVFL 158 (211)
Q Consensus 141 eE~~iL~~Sa~~l~~~~~ 158 (211)
+|++.|..|++.+++.++
T Consensus 294 ~E~~~l~~S~~~i~~~~~ 311 (321)
T PTZ00325 294 YEEELLEAAVPDLKKNIE 311 (321)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999988876543
No 28
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=99.93 E-value=1.7e-26 Score=206.74 Aligned_cols=137 Identities=10% Similarity=0.016 Sum_probs=117.9
Q ss_pred echhhHHHHHHhC-CCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccccccccccccc
Q psy17692 8 VSSRKNCIVRKEL-YRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSR 79 (211)
Q Consensus 8 ~~~~~~~~~k~sg-~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~ 79 (211)
|++-.+++||.+| |||+||||+ |.|||+||+ +++|+++|+++++| +||++|+|+||++
T Consensus 131 vD~~t~~~~k~sg~~p~~~ViG~---t~LDs~Rl~--~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~--------- 196 (322)
T cd01338 131 CNTNALIAMKNAPDIPPDNFTAM---TRLDHNRAK--SQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNA--------- 196 (322)
T ss_pred HHHHHHHHHHHcCCCChHheEEe---hHHHHHHHH--HHHHHHhCcChhHeEEEEEEeCCcccEEEehhhc---------
Confidence 3444567999995 999999999 799999999 99999999999988 9999999999999
Q ss_pred cccCcccccccc----------------------------------------chhhccC--CceeEeE-eecCccccccc
Q psy17692 80 KNCIVPKELYCP----------------------------------------EIEDREQ--DRRKPAI-HLLGHHGIEEE 116 (211)
Q Consensus 80 ~v~g~pv~~~~~----------------------------------------~~i~~d~--~~i~~vs-~l~G~yGi~~d 116 (211)
+++|.|+.++.. +++.+|+ ++++|++ +++|+||+.+|
T Consensus 197 ~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~~~~a~a~~~iv~ail~~~~~~~i~~~sv~~~g~yg~~~~ 276 (322)
T cd01338 197 TIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKARGASSAASAANAAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEG 276 (322)
T ss_pred EECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCcCCccHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCccCCCCC
Confidence 666666542211 4577788 5999999 68999999669
Q ss_pred eEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhc
Q psy17692 117 VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFL 158 (211)
Q Consensus 117 V~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~ 158 (211)
+|+|+|++||++|+.+++++.|+++|++.|..|++.+++..+
T Consensus 277 v~~s~P~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~l~~~~~ 318 (322)
T cd01338 277 LIFSFPVRSKGGGYEIVEGLEIDDFAREKIDATLAELLEERE 318 (322)
T ss_pred eEEEEEEEEeCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999977766543
No 29
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=99.93 E-value=3.4e-26 Score=212.20 Aligned_cols=134 Identities=10% Similarity=0.080 Sum_probs=116.2
Q ss_pred echhhHHHHHHh-CCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccccccccccccc
Q psy17692 8 VSSRKNCIVRKE-LYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSR 79 (211)
Q Consensus 8 ~~~~~~~~~k~s-g~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~ 79 (211)
|+.--+.++|.+ |||++|||||| | |||+||+ ++||+++|+++++| |||++|||+||++
T Consensus 253 vD~~t~i~~k~apgiP~~rVig~g--t-lds~R~r--~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S~a--------- 318 (452)
T cd05295 253 LNLKTSILIKYAPSIPRKNIIAVA--R-LQENRAK--ALLARKLNVNSAGIKDVIVWGNIGGNTYIDLSKA--------- 318 (452)
T ss_pred HHHHHHHHHHHcCCCCHHHEEEec--c-hHHHHHH--HHHHHHhCcCHHHceeeEEEEccCCceeeeeeEE---------
Confidence 344456789999 99999999998 7 7799999 99999999999999 9999999999999
Q ss_pred cccC------------cccccccc------------------------------------chhhccC--CceeEeE-eec
Q psy17692 80 KNCI------------VPKELYCP------------------------------------EIEDREQ--DRRKPAI-HLL 108 (211)
Q Consensus 80 ~v~g------------~pv~~~~~------------------------------------~~i~~d~--~~i~~vs-~l~ 108 (211)
+++| .|+.+++. +++..|+ ++++|++ +++
T Consensus 319 ~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~v~~rg~~rkgsT~~siA~A~~~iv~ail~~t~~~~ilsvsv~sd 398 (452)
T cd05295 319 RVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVATLKSLSSSLNHEAAISPAHAIATTLSYWYHGSPPGEIFSLGVISE 398 (452)
T ss_pred EEcccccccccccccCccHHHHhcchhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeec
Confidence 5544 66644431 4567776 5899999 689
Q ss_pred CccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHh
Q psy17692 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKE 155 (211)
Q Consensus 109 G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~ 155 (211)
|+||+.+|+++|+||++|+.|+..++++.|+++|+++|..|++++.+
T Consensus 399 G~YGip~gv~~S~Pviig~~Gve~V~~L~L~e~E~~kL~~S~~eL~~ 445 (452)
T cd05295 399 GWYGIPEGIVFSMPVKFQNGSWEVVTDLELSEILREVLKRITSDLIQ 445 (452)
T ss_pred cccCCcCCEEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 99999779999999999999999999999999999999999976654
No 30
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=99.93 E-value=4.3e-26 Score=203.27 Aligned_cols=148 Identities=13% Similarity=0.079 Sum_probs=117.5
Q ss_pred CCceechhhHH----------HHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cC-CCceeee
Q psy17692 4 SGKTVSSRKNC----------IVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SS-GKSCIVR 66 (211)
Q Consensus 4 ~~~~~~~~~~~----------~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eH-Gds~vp~ 66 (211)
+++.++.+|++ +||.+|||++||||+| + |||+||| ++||+++|+++++| || ||+|||+
T Consensus 110 ~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~--~-LDs~R~~--~~la~~l~v~~~~V~~~v~GeHsGds~vp~ 184 (310)
T cd01337 110 KALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVT--T-LDVVRAN--TFVAELLGLDPAKVNVPVIGGHSGVTILPL 184 (310)
T ss_pred CeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeee--c-hHHHHHH--HHHHHHhCcCHHHEEEEEEecCCCCceecc
Confidence 46667777776 4889999999999997 6 9999999 99999999999999 99 9999999
Q ss_pred cccccccccccc-------c--cccC---------cccccccc--------chhhcc---CCceeEeEeecCccccccce
Q psy17692 67 KELYRPERTVSS-------R--KNCI---------VPKELYCP--------EIEDRE---QDRRKPAIHLLGHHGIEEEV 117 (211)
Q Consensus 67 ~S~~~i~~~il~-------~--~v~g---------~pv~~~~~--------~~i~~d---~~~i~~vs~l~G~yGi~~dV 117 (211)
||++.+...+.. . ..+| .--+.|.+ ++|.+| ++.+++++++.|+ |+ +|+
T Consensus 185 ~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl~~~~~~~~~~~~s~~~~~-g~-~~v 262 (310)
T cd01337 185 LSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLRGLKGEKGVIECAYVESD-VT-EAP 262 (310)
T ss_pred cccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHHHhcCCCcceEEEEEEecc-CC-Cce
Confidence 999965321110 0 0011 11222333 678855 5678888888877 87 799
Q ss_pred EeeeceEEecceEEEEecC-CCCHHHHHHHHhhHHhHHhhhc
Q psy17692 118 FLSLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKEVFL 158 (211)
Q Consensus 118 ~~s~P~vig~~GV~~Ive~-iLsdeE~~iL~~Sa~~l~~~~~ 158 (211)
|+|+||+||++|+.+++++ .|+++|++.|..|++.+++.+.
T Consensus 263 ~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i~~~~~ 304 (310)
T cd01337 263 FFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIE 304 (310)
T ss_pred EEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 6999999999999988876543
No 31
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=99.93 E-value=2.1e-26 Score=188.93 Aligned_cols=115 Identities=31% Similarity=0.405 Sum_probs=102.0
Q ss_pred CcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcccccccc---------------
Q psy17692 33 CIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP--------------- 91 (211)
Q Consensus 33 t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~--------------- 91 (211)
|.|||+||| ++||+++|++|++| |||++|||+||++ +++|+|+.+++.
T Consensus 1 T~LDs~R~~--~~la~~l~v~~~~v~~~ViGeHg~s~~~~~S~~---------~v~g~pl~~~~~~~~~~~~~~~~~l~~ 69 (174)
T PF02866_consen 1 TMLDSARFR--YFLAEKLGVNPSSVNAYVIGEHGDSQVPDWSHA---------KVGGVPLLSYAKPSGKLSEEELEELTE 69 (174)
T ss_dssp THHHHHHHH--HHHHHHHTSGGGGEEEEEEBSSSTTEEEEGGGE---------EETTEEHHHHHHTTTSSSHHHHHHHHH
T ss_pred CccHHHHHH--HHHHHHHCcCccceEEEEEecCCcceeeeeecc---------cccccccccccccccchhHHhhhcccc
Confidence 789999999 99999999999999 9999999999999 888888844322
Q ss_pred -----------------------------chhhccCCceeEeE-eecCccccccc-eEeeeceEEecceEEEEec-CCCC
Q psy17692 92 -----------------------------EIEDREQDRRKPAI-HLLGHHGIEEE-VFLSLPCVMADNGVTHIVN-QPLT 139 (211)
Q Consensus 92 -----------------------------~~i~~d~~~i~~vs-~l~G~yGi~~d-V~~s~P~vig~~GV~~Ive-~iLs 139 (211)
++|.+|+++++|++ +++|+||+..+ +|+|+|++||++|+.++++ +.|+
T Consensus 70 ~v~~~g~~ii~~k~g~t~~s~A~a~~~~v~ail~~~~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~ 149 (174)
T PF02866_consen 70 RVRKAGYEIIKAKGGSTSYSIAAAAARIVEAILKDERRILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLS 149 (174)
T ss_dssp HHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHTTHTEEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSST
T ss_pred ccEeccceeeeeccccCcCCHHHHHHHHHHHHhhcccccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCC
Confidence 45777888999999 68999999433 9999999999999999999 9999
Q ss_pred HHHHHHHHhhHHhHHhhhc
Q psy17692 140 QEEIEKLKKSAQAIKEVFL 158 (211)
Q Consensus 140 deE~~iL~~Sa~~l~~~~~ 158 (211)
++|++.|..|++.+++.++
T Consensus 150 ~~E~~~l~~sa~~l~~~i~ 168 (174)
T PF02866_consen 150 EEEQEKLKESAKELKKEIE 168 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999988776654
No 32
>PRK05086 malate dehydrogenase; Provisional
Probab=99.92 E-value=3.4e-25 Score=197.52 Aligned_cols=145 Identities=12% Similarity=0.068 Sum_probs=112.4
Q ss_pred CceechhhHH------HH----HHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCC-ceeeec
Q psy17692 5 GKTVSSRKNC------IV----RKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGK-SCIVRK 67 (211)
Q Consensus 5 ~~~~~~~~~~------~~----k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGd-s~vp~~ 67 (211)
+..+.++|++ ++ |.+|||++||||+| + |||+||+ ++||+++|+++++| |||+ +|||+|
T Consensus 112 ~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~--~-Lds~R~~--~~ia~~l~~~~~~v~~~v~GeHg~~s~~p~~ 186 (312)
T PRK05086 112 ACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVT--T-LDVIRSE--TFVAELKGKQPGEVEVPVIGGHSGVTILPLL 186 (312)
T ss_pred eEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeee--c-HHHHHHH--HHHHHHhCCChhheEEEEEEecCCCceeccc
Confidence 3456666665 33 99999999999998 6 9999999 99999999999999 9977 999999
Q ss_pred ccccccccc-------ccccc--cC---------cccccccc--------chhhc---cCCceeEeEeecCccccccceE
Q psy17692 68 ELYRPERTV-------SSRKN--CI---------VPKELYCP--------EIEDR---EQDRRKPAIHLLGHHGIEEEVF 118 (211)
Q Consensus 68 S~~~i~~~i-------l~~~v--~g---------~pv~~~~~--------~~i~~---d~~~i~~vs~l~G~yGi~~dV~ 118 (211)
|++ -...+ +.+++ .| .-.+.|.+ +++.+ |+++++|+++++|+ |+ .|+|
T Consensus 187 S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai~~~~~~~~~v~~~~~~~~~-g~-~~v~ 263 (312)
T PRK05086 187 SQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGD-GK-YARF 263 (312)
T ss_pred ccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHHhcCCCCCcEEEEEEEecc-CC-cceE
Confidence 988 11000 00000 00 01122222 56774 47789998888887 87 7999
Q ss_pred eeeceEEecceEEEEecC-CCCHHHHHHHHhhHHhHHhhh
Q psy17692 119 LSLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKEVF 157 (211)
Q Consensus 119 ~s~P~vig~~GV~~Ive~-iLsdeE~~iL~~Sa~~l~~~~ 157 (211)
+|+|++||++|+.+++++ .|+++|++.|..|++.+++.+
T Consensus 264 ~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~~ 303 (312)
T PRK05086 264 FAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTLKKDI 303 (312)
T ss_pred EEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999998777654
No 33
>PLN00106 malate dehydrogenase
Probab=99.91 E-value=7.8e-27 Score=209.07 Aligned_cols=151 Identities=16% Similarity=0.215 Sum_probs=114.3
Q ss_pred HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCC-ceeeeccccccccccccccccCcc
Q psy17692 13 NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGK-SCIVRKELYRPERTVSSRKNCIVP 85 (211)
Q Consensus 13 ~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGd-s~vp~~S~~~i~~~il~~~v~g~p 85 (211)
+.+++.+||||+||||+| + |||+||+ +++|+++|+++.+| |||+ +|||+||++.+
T Consensus 147 ~~~~~~s~~p~~~viG~~--~-LDs~Rl~--~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~------------- 208 (323)
T PLN00106 147 EVLKKAGVYDPKKLFGVT--T-LDVVRAN--TFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATP------------- 208 (323)
T ss_pred HHHHHcCCCCcceEEEEe--c-chHHHHH--HHHHHHhCCChhheEEEEEEeCCCccEeeehhccee-------------
Confidence 345799999999999997 6 9999999 99999999999999 9955 99999999932
Q ss_pred cccccc---chhhcc-CCceeEeEee---cC--ccccccceEeeeceEEecceEEEEecCCCCH--HHHHHHHhhH-HhH
Q psy17692 86 KELYCP---EIEDRE-QDRRKPAIHL---LG--HHGIEEEVFLSLPCVMADNGVTHIVNQPLTQ--EEIEKLKKSA-QAI 153 (211)
Q Consensus 86 v~~~~~---~~i~~d-~~~i~~vs~l---~G--~yGi~~dV~~s~P~vig~~GV~~Ive~iLsd--eE~~iL~~Sa-~~l 153 (211)
...+.. +.+... .++.+.+..+ +| +||++ .++.++++++|+| .|+..+++|. ++.
T Consensus 209 ~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a-------------~a~~~ii~ail~~~~~~~~v~~~s~~~~~ 275 (323)
T PLN00106 209 KVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMA-------------YAAARFADACLRGLNGEADVVECSYVQSE 275 (323)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHH-------------HHHHHHHHHHHhccCCCceEEEEEEECcc
Confidence 111111 111111 1234444433 45 58887 8888899998886 3367888876 222
Q ss_pred -Hh-hhcccceeecCCceeEEecC-CCCHHHHHHHHHHHHHHHh
Q psy17692 154 -KE-VFLSLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 154 -~~-~~~svP~vlg~~Gv~~ii~l-~L~~~E~~~l~~Sa~~ik~ 194 (211)
++ ++-|+|++||++|+++++++ +||++|+++|++|++.|++
T Consensus 276 ~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~ 319 (323)
T PLN00106 276 VTELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKA 319 (323)
T ss_pred cCCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence 34 55689999999999999998 9999999999999998874
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=99.91 E-value=2.1e-24 Score=187.34 Aligned_cols=135 Identities=22% Similarity=0.283 Sum_probs=116.4
Q ss_pred CCceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccc
Q psy17692 4 SGKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYR 71 (211)
Q Consensus 4 ~~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~ 71 (211)
+++.++.+| +.++|.+|||++||||+| | ||++||+ ++||+++++++++| +||++|+|+||.+
T Consensus 112 ~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~--~-ld~~r~~--~~la~~l~v~~~~v~~~v~G~hg~~~~~~~s~~- 185 (263)
T cd00650 112 DAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLG--T-LDPIRFR--RILAEKLGVDPDDVKVYILGEHGGSQVPDWSTV- 185 (263)
T ss_pred CeEEEEecCcHHHHHHHHHHHhCCCchhEEEee--c-chHHHHH--HHHHHHhCCCccceEEEEEEcCCCceEeccccc-
Confidence 455555555 468999999999999999 9 9999999 99999999999999 9999999999988
Q ss_pred cccccccccccCcccccccc--chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHh
Q psy17692 72 PERTVSSRKNCIVPKELYCP--EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKK 148 (211)
Q Consensus 72 i~~~il~~~v~g~pv~~~~~--~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~ 148 (211)
+ +....+. +++.+|++.++|++ +.+|+||+.+|+++|+||+||++|+.+++++.|+++|++.|..
T Consensus 186 --------~----~a~~~~~ii~ai~~~~~~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~~l~~~e~~~l~~ 253 (263)
T cd00650 186 --------R----IATSIADLIRSLLNDEGEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEVGLTDFELEKLQK 253 (263)
T ss_pred --------h----HHHHHHHHHHHHHcCCCEEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecCCCCHHHHHHHHH
Confidence 3 1111111 78889999999999 5899999658999999999999999999999999999999999
Q ss_pred hHHhHHhh
Q psy17692 149 SAQAIKEV 156 (211)
Q Consensus 149 Sa~~l~~~ 156 (211)
|++.++..
T Consensus 254 s~~~~~~~ 261 (263)
T cd00650 254 SADTLKKE 261 (263)
T ss_pred HHHHHHHH
Confidence 99777654
No 35
>KOG1494|consensus
Probab=99.08 E-value=7.9e-10 Score=97.30 Aligned_cols=144 Identities=14% Similarity=0.139 Sum_probs=97.9
Q ss_pred eechhhHHH---HHHhC-CCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCC-c-------cCCCceeeecccccccc
Q psy17692 7 TVSSRKNCI---VRKEL-YRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRT-V-------SSGKSCIVRKELYRPER 74 (211)
Q Consensus 7 ~~~~~~~~~---~k~sg-~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~-V-------eHGds~vp~~S~~~i~~ 74 (211)
.|||+-+.+ +|..| |+|+|+||. |.||..|.+ +|+++.++++|.+ + ..|.+.+|+.|++...-
T Consensus 147 PVNstVPIaaevlKk~G~ydpkklfGV---TtLDvVRA~--tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~ 221 (345)
T KOG1494|consen 147 PVNSTVPIAAEVLKKAGVYDPKKLFGV---TTLDVVRAN--TFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPF 221 (345)
T ss_pred cccccchHHHHHHHHcCCCCccceece---ehhhhhhHH--HHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcc
Confidence 356665544 44455 999999999 999999999 9999999999944 4 55677779999984311
Q ss_pred ccccc---------cccCcccc---------c--ccc------ch---hhccCCceeEeEeecC-ccccccceEeeeceE
Q psy17692 75 TVSSR---------KNCIVPKE---------L--YCP------EI---EDREQDRRKPAIHLLG-HHGIEEEVFLSLPCV 124 (211)
Q Consensus 75 ~il~~---------~v~g~pv~---------~--~~~------~~---i~~d~~~i~~vs~l~G-~yGi~~dV~~s~P~v 124 (211)
....+ +.+|.-+- . ++. ++ -.+++..+..|++... .+++ -||+.|.+
T Consensus 222 ~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~---~fFaspv~ 298 (345)
T KOG1494|consen 222 RFTDDEIEALTHRIQNGGTEVVKAKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASPVTEL---PFFATPVT 298 (345)
T ss_pred cCCHHHHHHHHHHHHhCCceEEEeccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEeccccCc---cceeceEE
Confidence 11100 11221110 0 000 11 2333456777886554 3565 49999999
Q ss_pred EecceEEEEecC-CCCHHHHHHHHhhHHhHHhhhc
Q psy17692 125 MADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKEVFL 158 (211)
Q Consensus 125 ig~~GV~~Ive~-iLsdeE~~iL~~Sa~~l~~~~~ 158 (211)
+|++|+.++..+ .|+|.|++.|+.+...++..++
T Consensus 299 Lg~~Gv~~v~~l~~lsd~E~~~l~~~~~eLk~sI~ 333 (345)
T KOG1494|consen 299 LGKKGVEEVLGLGKLSDYEEKALEAAKPELKKSIE 333 (345)
T ss_pred ecCCceeeecCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 8999999999888877766543
No 36
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=99.01 E-value=1.7e-11 Score=110.01 Aligned_cols=67 Identities=25% Similarity=0.346 Sum_probs=60.6
Q ss_pred ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHhc
Q psy17692 128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIR 195 (211)
Q Consensus 128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~~ 195 (211)
.++.++++++|+|+ ++.+++|+ ++.|+. +-|+|++||++||+++++++||++|+++|++||+.||+.
T Consensus 245 ~a~~~i~~ail~d~-~~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~sa~~i~~~ 316 (321)
T PTZ00082 245 AAAIEMAEAYLKDK-KRVLPCSAYLEGQYGHKDIYMGTPAVIGANGVEKIIELDLTPEEQKKFDESIKEVKRL 316 (321)
T ss_pred HHHHHHHHHHHcCC-CcEEEEEEEecccCCCCCeEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 78889999999997 89999998 666664 459999999999999999999999999999999999853
No 37
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.95 E-value=3.8e-11 Score=106.95 Aligned_cols=67 Identities=27% Similarity=0.421 Sum_probs=60.1
Q ss_pred ceEEEEecCCCCHHHHHHHHhhH--HhHHh---hhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHhc
Q psy17692 128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKE---VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIR 195 (211)
Q Consensus 128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~---~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~~ 195 (211)
.++.++++++|.|+ +..+++|+ ++.|+ ++-|+|++||++||+++++++||++|+++|++||+.||+.
T Consensus 230 ~~~~~i~~ai~~~~-~~v~~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~s~~~i~~~ 301 (305)
T TIGR01763 230 ASVVEMVEAILKDR-KRVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYELKLDQSELALLNKSAKIVDEN 301 (305)
T ss_pred HHHHHHHHHHhCCC-CeEEEEEEEecccCCCCceEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 77888999999998 89999998 66665 4459999999999999999999999999999999999853
No 38
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=98.94 E-value=3.7e-11 Score=106.85 Aligned_cols=66 Identities=35% Similarity=0.519 Sum_probs=59.5
Q ss_pred ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
.++.++++++|.|+ ++.+++|+ ++.|+. +-|+|++||++|++++++++||++|+++|++||+.||+
T Consensus 229 ~a~~~~i~ail~d~-~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~ik~ 299 (299)
T TIGR01771 229 MAVARIVEAILHDE-NRVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIELPLSDEEKEAFQKSAETLKK 299 (299)
T ss_pred HHHHHHHHHHHcCC-CcEEEEEEEecccCCCCCEEEEEEEEEeCCeeEEEccCCCCHHHHHHHHHHHHHHhC
Confidence 78889999999997 89999998 656654 45999999999999999999999999999999999984
No 39
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.87 E-value=1e-10 Score=104.71 Aligned_cols=66 Identities=23% Similarity=0.383 Sum_probs=59.8
Q ss_pred ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
.++.++++++|+|+ ++.+++|+ ++.|+. +-|+|++||++||+++++++||++|+++|++||+.||+
T Consensus 239 ~a~~~~~~ail~~~-~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l~l~~~E~~~l~~s~~~l~~ 309 (319)
T PTZ00117 239 AAIVAMIEAYLKDE-KRVLVCSVYLNGQYNCKNLFVGVPVVIGGKGIEKVIELELNAEEKELFDKSIESIQE 309 (319)
T ss_pred HHHHHHHHHHhcCC-CeEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 78889999999997 89999997 666764 44999999999999999999999999999999999985
No 40
>KOG1495|consensus
Probab=98.87 E-value=9.9e-11 Score=102.48 Aligned_cols=66 Identities=35% Similarity=0.470 Sum_probs=59.8
Q ss_pred ceEEEEecCCCCHHHHHHHHhhH--HhHHhhhc----ccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEVFL----SLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~~~----svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
.++..+++++|.+. ++++++|+ +++|++.+ |+||++|++|+..+++.+||++|.++|++||+.|++
T Consensus 254 lsva~l~~ail~n~-~~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~~Lt~~E~akL~kSa~tl~~ 325 (332)
T KOG1495|consen 254 LSVADLAQAILRNL-RRIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQKLTDEEVAKLKKSAKTLLE 325 (332)
T ss_pred HHHHHHHHHHHhCc-CceeeeeeccccccCCCCceEEecceeecCCchhhhhcccCCHHHHHHHHHHHHHHHH
Confidence 55677899999998 89999997 77877753 999999999999999999999999999999999976
No 41
>PLN02602 lactate dehydrogenase
Probab=98.87 E-value=1.1e-10 Score=106.06 Aligned_cols=66 Identities=35% Similarity=0.468 Sum_probs=60.0
Q ss_pred ceEEEEecCCCCHHHHHHHHhhH--HhHHhh-----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV-----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~-----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
.++.++++++|.|+ ++.+++|+ ++.|+. +-|+|++||++||+++++++||++|+++|++||+.||+
T Consensus 271 ~a~a~ii~ail~d~-~~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l~L~~~E~~~l~~sa~~l~~ 343 (350)
T PLN02602 271 YSVASLVRSLLRDQ-RRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNVHLTDEEAERLRKSAKTLWE 343 (350)
T ss_pred HHHHHHHHHHHhcC-CCeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 77889999999998 89999998 666665 34999999999999999999999999999999999985
No 42
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.87 E-value=1e-10 Score=104.26 Aligned_cols=66 Identities=33% Similarity=0.511 Sum_probs=59.2
Q ss_pred ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
.++.++++++|+|+ ++.+++|+ ++.|+. +-|+|++||++||+++++++||++|+++|++|++.||+
T Consensus 233 ~a~~~i~~ail~~~-~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~~~L~~~E~~~l~~s~~~i~~ 303 (308)
T cd05292 233 LALARIVEAILRDE-NSVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLPPPLSEEEEEALRASAEVLKE 303 (308)
T ss_pred HHHHHHHHHHHcCC-CcEEEEEEEEcccCCCCCEEEEEEEEEeCCceEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 77888999999997 89999998 656654 45999999999999999999999999999999999984
No 43
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=98.86 E-value=7.4e-11 Score=96.71 Aligned_cols=77 Identities=36% Similarity=0.436 Sum_probs=66.7
Q ss_pred eEeec-C--ccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhH--HhHHhhhc-----ccceeecCCceeEEe
Q psy17692 104 AIHLL-G--HHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSA--QAIKEVFL-----SLPCVMADNGVTHIV 173 (211)
Q Consensus 104 vs~l~-G--~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~~~-----svP~vlg~~Gv~~ii 173 (211)
+...+ | .||++ .++.+++++++.++ +..+++|+ ++.|+..+ |+|++||++|+++++
T Consensus 78 ii~~k~g~t~~s~A-------------~a~~~~v~ail~~~-~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~ 143 (174)
T PF02866_consen 78 IIKAKGGSTSYSIA-------------AAAARIVEAILKDE-RRILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIV 143 (174)
T ss_dssp HHHHHSSSCHHHHH-------------HHHHHHHHHHHTTH-TEEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEE
T ss_pred eeeeccccCcCCHH-------------HHHHHHHHHHhhcc-cccccceeccccccCcccccceecceEEEcCCeeEEEe
Confidence 33345 5 68887 89999999999998 89999998 56666543 999999999999999
Q ss_pred c-CCCCHHHHHHHHHHHHHHHh
Q psy17692 174 N-QPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 174 ~-l~L~~~E~~~l~~Sa~~ik~ 194 (211)
+ ++||++|+++|++||+.|++
T Consensus 144 ~~~~L~~~E~~~l~~sa~~l~~ 165 (174)
T PF02866_consen 144 EDLPLSEEEQEKLKESAKELKK 165 (174)
T ss_dssp CSBSSTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999986
No 44
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.85 E-value=8.9e-11 Score=105.53 Aligned_cols=67 Identities=13% Similarity=0.108 Sum_probs=60.2
Q ss_pred ceEEEEecCCCCHH-HHHHHHhhH--HhHHhh----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPLTQE-EIEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iLsde-E~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
.++.++++++|+|+ |++++++|+ ++.|+. +-|+|++||++||+++++++||++|+++|++||+.||+
T Consensus 246 ~~~~~i~~ail~~~~~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~~L~~~E~~~l~~s~~~l~~ 319 (325)
T cd01336 246 KAICDHVHDWWFGTPEGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGLSIDDFSREKIDATAKELVE 319 (325)
T ss_pred HHHHHHHHHHHcCCCCCeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 77788999999985 589999998 667765 45999999999999999999999999999999999986
No 45
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=98.85 E-value=1.7e-10 Score=103.25 Aligned_cols=66 Identities=32% Similarity=0.467 Sum_probs=60.7
Q ss_pred ceEEEEecCCCCHHHHHHHHhhH--HhHHh---hhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKE---VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~---~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
.++.++++++|.|+ ++.|++|+ ++.|+ ++-++|++||++|++++++++|+++|+++|++|++.+|+
T Consensus 232 ~a~a~~~~ail~d~-~~vl~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie~~l~~~E~~~l~~s~~~lk~ 302 (313)
T COG0039 232 AALARMVEAILRDE-KRVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILELLLSDDEQEKLDKSAEELKK 302 (313)
T ss_pred HHHHHHHHHHHcCC-CceEEEEEeecCccCcCCeEEEeeEEEcCCCcEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 88899999999998 79999998 77555 555999999999999999999999999999999999986
No 46
>KOG1496|consensus
Probab=98.80 E-value=1.3e-08 Score=88.28 Aligned_cols=135 Identities=14% Similarity=0.075 Sum_probs=95.4
Q ss_pred hhHHHHHHh--CCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccccccccccccccc
Q psy17692 11 RKNCIVRKE--LYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSRKN 81 (211)
Q Consensus 11 ~~~~~~k~s--g~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~~v 81 (211)
||-++.+.. ..|.+++-.+ |.||..|.. ..||.++|++..+| +|+.+|+|+..+++|.. +.
T Consensus 135 TNali~~k~ApsIP~kNfs~l---TRLDhNRA~--~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~-----~~ 204 (332)
T KOG1496|consen 135 TNALILKKFAPSIPEKNFSAL---TRLDHNRAL--AQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNT-----NG 204 (332)
T ss_pred cchhHHhhhCCCCchhcchhh---hhhchhhHH--HHHHHhhCCchhhcceeEEecccccccCCCccceeeec-----cC
Confidence 344444443 3788888444 999999999 99999999999998 99999999999995421 11
Q ss_pred cCcccccccc-------------------------------------c---hhhccCCceeEeE---eecCccccccceE
Q psy17692 82 CIVPKELYCP-------------------------------------E---IEDREQDRRKPAI---HLLGHHGIEEEVF 118 (211)
Q Consensus 82 ~g~pv~~~~~-------------------------------------~---~i~~d~~~i~~vs---~l~G~yGi~~dV~ 118 (211)
+..|+.+... + .....+..+-=+| +.+|.|||.+|+.
T Consensus 205 ~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~ark~SSA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDGsYgip~gli 284 (332)
T KOG1496|consen 205 GEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKARKLSSAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDGSYGIPDGLI 284 (332)
T ss_pred CcccHHHHhccchhhccchhhHHHhcchHhhhhhhhhhhhhHHHhHhhhhhheecCCCCccEEEEeeecCCCCCCCCCeE
Confidence 2245433221 0 0011111111133 5789999989999
Q ss_pred eeeceEEecceEEEEe-cCCCCHHHHHHHHhhHHhHHhh
Q psy17692 119 LSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAIKEV 156 (211)
Q Consensus 119 ~s~P~vig~~GV~~Iv-e~iLsdeE~~iL~~Sa~~l~~~ 156 (211)
+|+|+.+-. |-.+|+ .+.++|.-++++..+++++.+-
T Consensus 285 ~SfPv~~k~-g~wkiVqgl~iddf~r~km~~t~~EL~eE 322 (332)
T KOG1496|consen 285 FSFPVTIKN-GDWKIVQGLPIDDFSREKMDLTAKELKEE 322 (332)
T ss_pred EEcceEecC-CceEEEcCcchhHHHHHhhhhhHHHHHHh
Confidence 999999975 666666 7899999999999998666543
No 47
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.79 E-value=2.5e-10 Score=101.94 Aligned_cols=66 Identities=32% Similarity=0.454 Sum_probs=59.2
Q ss_pred ceEEEEecCCCCHHHHHHHHhhH--HhHHh---hhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKE---VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~---~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
.++.+++++++.|+ ++.+++|+ ++.|+ .+-|+||+||++|++++++++||++|+++|++||+.|++
T Consensus 234 ~a~~~ii~ail~d~-~~v~~vsv~~~G~yg~~~v~~svP~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~i~~ 304 (307)
T cd05290 234 KSASRLIKAILLDE-RSILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLEIPLDEWELEKLHKSAKAIRE 304 (307)
T ss_pred HHHHHHHHHHHhCC-CeEEEEEEeeCCccCCCCEEEEEEEEEeCCCceEecCCCCCHHHHHHHHHHHHHHHH
Confidence 78889999999997 79999998 55665 345999999999999999999999999999999999985
No 48
>PTZ00325 malate dehydrogenase; Provisional
Probab=98.78 E-value=3.4e-10 Score=101.77 Aligned_cols=163 Identities=12% Similarity=0.056 Sum_probs=101.1
Q ss_pred hhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhh----hhhhCCCCCCccCCCceeeeccccc--cccc---------
Q psy17692 11 RKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTV----SSRKNRPKRTVSSGKSCIVRKELYR--PERT--------- 75 (211)
Q Consensus 11 ~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~l----a~~~~v~~~~VeHGds~vp~~S~~~--i~~~--------- 75 (211)
.++.+.+..-..++++|-... --+|. +. +.. .+..+.+|++| -|-++ .+.++.+ |.+.
T Consensus 105 ~~~i~~~i~~~~~~~iviv~S-NPvdv--~~--~~~~~~~~~~sg~p~~~v-iG~g~-LDs~R~r~~la~~l~v~~~~V~ 177 (321)
T PTZ00325 105 VRDLVAAVASSAPKAIVGIVS-NPVNS--TV--PIAAETLKKAGVYDPRKL-FGVTT-LDVVRARKFVAEALGMNPYDVN 177 (321)
T ss_pred HHHHHHHHHHHCCCeEEEEec-CcHHH--HH--HHHHhhhhhccCCChhhe-eechh-HHHHHHHHHHHHHhCcChhheE
Confidence 445555555566777777653 23555 33 333 36678999999 44443 5555442 1110
Q ss_pred -ccccccc-----------CccccccccchhhccC-CceeEeEeec---C--ccccccceEeeeceEEecceEEEEecCC
Q psy17692 76 -VSSRKNC-----------IVPKELYCPEIEDREQ-DRRKPAIHLL---G--HHGIEEEVFLSLPCVMADNGVTHIVNQP 137 (211)
Q Consensus 76 -il~~~v~-----------g~pv~~~~~~~i~~d~-~~i~~vs~l~---G--~yGi~~dV~~s~P~vig~~GV~~Ive~i 137 (211)
..-...+ |.|+...-.+.+.... ++.+.+..++ | +||++ .++.++++++
T Consensus 178 ~~VlGeHGd~s~v~~~S~~g~~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a-------------~a~~~i~~ai 244 (321)
T PTZ00325 178 VPVVGGHSGVTIVPLLSQTGLSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMA-------------YAAAEWSTSV 244 (321)
T ss_pred EEEEeecCCcccccchhccCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHH-------------HHHHHHHHHH
Confidence 0000111 3333210001111111 2344455444 5 68998 9999999999
Q ss_pred CCH---HHHHHHHhhH-HhHHh---hhcccceeecCCceeEEec-CCCCHHHHHHHHHHHHHHHh
Q psy17692 138 LTQ---EEIEKLKKSA-QAIKE---VFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 138 Lsd---eE~~iL~~Sa-~~l~~---~~~svP~vlg~~Gv~~ii~-l~L~~~E~~~l~~Sa~~ik~ 194 (211)
|+| + ++.++++. ++.|+ ++-|+||+||++||+++++ ++||++|+++|++|++.|++
T Consensus 245 l~~~~~~-~~v~~~~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~ 308 (321)
T PTZ00325 245 LKALRGD-KGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIGPLNAYEEELLEAAVPDLKK 308 (321)
T ss_pred HhhcCCC-CCeEEEEEEecCCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence 965 6 78888764 55555 3459999999999999999 99999999999999999974
No 49
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.77 E-value=3.5e-10 Score=101.68 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=59.4
Q ss_pred ceEEEEecCCCCHHHH--HHHHhhH--HhHH-hh----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPLTQEEI--EKLKKSA--QAIK-EV----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iLsdeE~--~iL~~Sa--~~l~-~~----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
.++.++++++++|+ + +++++|+ ++.| ++ +-|+|++||++||+++++++||++|+++|++|++.||+
T Consensus 243 ~a~~~iv~ail~~~-~~~~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l~L~~~E~~~l~~s~~~l~~ 317 (323)
T cd00704 243 KAIADHVKDWLFGT-PPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDLKLNDWLREKLKATEEELIE 317 (323)
T ss_pred HHHHHHHHHHHhCC-CCCcEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 77888999999997 7 8999997 6666 54 45999999999999999999999999999999999986
No 50
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.74 E-value=4.8e-10 Score=99.63 Aligned_cols=66 Identities=35% Similarity=0.495 Sum_probs=59.0
Q ss_pred ceEEEEecCCCCHHHHHHHHhhH--HhHHh---hhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKE---VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~---~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
.++.++++++|.|+ +..+++|+ ++.|+ ++-|+|++||++||+++++++||++|+++|++|++.||+
T Consensus 232 ~a~~~~~~ail~~~-~~v~~~s~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~s~~~l~~ 302 (306)
T cd05291 232 TALARIVKAILNDE-NAILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIELDLTEEEQEKFEKSADIIKE 302 (306)
T ss_pred HHHHHHHHHHHcCC-CEEEEEEEEeccccCCCCEEEEEEEEEeCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 67788999999986 89999998 66665 344999999999999999999999999999999999985
No 51
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=98.74 E-value=5.1e-10 Score=100.24 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=64.0
Q ss_pred ceeEeEee---cC--ccccccceEeeeceEEecceEEEEecCCCC---HHHHHHHHhhH-HhHHh---hhcccceeecCC
Q psy17692 100 RRKPAIHL---LG--HHGIEEEVFLSLPCVMADNGVTHIVNQPLT---QEEIEKLKKSA-QAIKE---VFLSLPCVMADN 167 (211)
Q Consensus 100 ~i~~vs~l---~G--~yGi~~dV~~s~P~vig~~GV~~Ive~iLs---deE~~iL~~Sa-~~l~~---~~~svP~vlg~~ 167 (211)
+.+.+..+ +| +||++ .++.+++++++. |+ +..++.|. ++.|+ ++-|+|++||++
T Consensus 208 ~g~~Ii~~k~gkg~t~~~ia-------------~a~~~iv~ail~~~~d~-~~v~~~s~~~g~yg~~~v~~s~P~~ig~~ 273 (312)
T TIGR01772 208 AGTEVVKAKAGAGSATLSMA-------------FAGARFVLSLVRGLKGE-EGVVECAYVESDGVTEATFFATPLLLGKN 273 (312)
T ss_pred HHHHHHhCccCCCChhHHHH-------------HHHHHHHHHHHHhhCCC-ccEEEEEEEccCCCcCceEEEEEEEEcCC
Confidence 34444433 45 58998 888899999994 55 68888544 44444 445999999999
Q ss_pred ceeEEecC-CCCHHHHHHHHHHHHHHHh
Q psy17692 168 GVTHIVNQ-PLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 168 Gv~~ii~l-~L~~~E~~~l~~Sa~~ik~ 194 (211)
||++++++ +||++|+++|++|++.|++
T Consensus 274 Gv~~i~~~~~L~~~E~~~l~~S~~~i~~ 301 (312)
T TIGR01772 274 GVEKRLGIGKLSSFEEKMLNGALPELKK 301 (312)
T ss_pred eeEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999963
No 52
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=98.72 E-value=5.7e-10 Score=99.06 Aligned_cols=66 Identities=39% Similarity=0.506 Sum_probs=59.6
Q ss_pred ceEEEEecCCCCHHHHHHHHhhH--HhHHh---hhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKE---VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~---~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
.++.++++++++++ ++.+++|+ ++.|+ .+-|+|+++|++|++++++++||++|+++|++|++.|++
T Consensus 227 ~a~~~~~~ai~~~~-~~v~~~s~~~~g~yg~~~~~~s~Pv~ig~~Gi~~i~~l~L~~~E~~~l~~s~~~l~~ 297 (300)
T cd00300 227 TAIADIVKSILLDE-RRVLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEIPLTEDEEAKLQKSAEALKE 297 (300)
T ss_pred HHHHHHHHHHHcCC-CeEEEEEEEecCccCCCCEEEEEEEEEeCCCeEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 88889999999997 89999998 66665 445999999999999999999999999999999999985
No 53
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.72 E-value=6.2e-10 Score=99.61 Aligned_cols=66 Identities=39% Similarity=0.654 Sum_probs=59.4
Q ss_pred ceEEEEecCCCCHHHHHHHHhhH--HhHHhh----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
.++.++++++++++ +..+++|+ ++.|+. +-++||+||++|++++++++||++|+++|++|++.||+
T Consensus 237 ~a~~~ii~ail~d~-~~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l~L~~~E~~~l~~s~~~i~~ 308 (312)
T cd05293 237 LSVADLVDAILRNT-GRVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQPLTEEEQEKLQKSADTLWE 308 (312)
T ss_pred HHHHHHHHHHHcCC-CeEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 78888999999998 79999998 656654 44999999999999999999999999999999999985
No 54
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=98.72 E-value=6.1e-10 Score=99.79 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=58.0
Q ss_pred ceEEEEecCCCCHH-HHHHHHhhH--H-h-HHhh----hcccceeecCCceeEEec-CCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPLTQE-EIEKLKKSA--Q-A-IKEV----FLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iLsde-E~~iL~~Sa--~-~-l~~~----~~svP~vlg~~Gv~~ii~-l~L~~~E~~~l~~Sa~~ik~ 194 (211)
.++.+++++++.++ +++++++|+ + + .|++ +-|+|++||++|++++++ ++||++|+++|++||+.|++
T Consensus 227 ~ai~~iv~ail~~~~~~~i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l~L~~~E~~~l~~Sa~~l~~ 303 (313)
T TIGR01756 227 KASLQHMKAWLFGTRPGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQTEKDLFE 303 (313)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence 37888999999932 379999998 4 3 7775 349999999999999999 99999999999999999865
No 55
>PLN00135 malate dehydrogenase
Probab=98.72 E-value=5.5e-10 Score=99.93 Aligned_cols=74 Identities=9% Similarity=0.040 Sum_probs=64.7
Q ss_pred cC--ccccccceEeeeceEEecceEEEEecCCCCH-HHHHHHHhhH--HhHHhh----hcccceeecCCceeEEecCCCC
Q psy17692 108 LG--HHGIEEEVFLSLPCVMADNGVTHIVNQPLTQ-EEIEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVNQPLT 178 (211)
Q Consensus 108 ~G--~yGi~~dV~~s~P~vig~~GV~~Ive~iLsd-eE~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~l~L~ 178 (211)
+| +||++ .++.+++++++++ .+++++++|+ ++.|++ +-|+|+++|++|++.+++++||
T Consensus 217 kg~t~~~ia-------------~a~~~iv~ai~~~~~~~~v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l~L~ 283 (309)
T PLN00135 217 KLSSALSAA-------------SSACDHIRDWVLGTPEGTWVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGLSID 283 (309)
T ss_pred CccHHHHHH-------------HHHHHHHHHHHhCCcCCeEEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecCCCCC
Confidence 55 68888 8899999998883 3489999998 767775 3499999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy17692 179 QEEIEKLKKSAQAIKI 194 (211)
Q Consensus 179 ~~E~~~l~~Sa~~ik~ 194 (211)
++|+++|++||+.||.
T Consensus 284 ~~E~~~l~~S~~~lk~ 299 (309)
T PLN00135 284 EFSRKKMDATAKELKE 299 (309)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999974
No 56
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.71 E-value=6.3e-10 Score=99.99 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=60.8
Q ss_pred eEEEEecCCCCHHH-HHHHHhhH--HhHHhh----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh-ccccc
Q psy17692 129 GVTHIVNQPLTQEE-IEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI-RDFVK 199 (211)
Q Consensus 129 GV~~Ive~iLsdeE-~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~-~~~~~ 199 (211)
++.++++++|+|+. ++++++|+ ++.|++ +-|+|++||++||+++++++||++|+++|++|++.||+ ||++|
T Consensus 243 a~~~iv~ail~~~~~~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~l~~~~~~~~ 321 (322)
T cd01338 243 AAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGLEIDDFAREKIDATLAELLEEREAVK 321 (322)
T ss_pred HHHHHHHHHhcCCCCCeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 78889999999972 48999998 667765 34999999999999999999999999999999998875 55443
No 57
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.69 E-value=8.4e-10 Score=97.64 Aligned_cols=66 Identities=30% Similarity=0.465 Sum_probs=59.1
Q ss_pred ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
..+.++++++|.++ +.++++|+ ++.|+. +-|+|++||++|++++++++||++|+++|++||+.||+
T Consensus 227 ~~~~~i~~ail~~~-~~i~~~s~~~~g~yg~~~~~~s~P~~ig~~G~~~~~~l~l~~~E~~~l~~s~~~l~~ 297 (300)
T cd01339 227 AAIAEMVEAILKDK-KRVLPCSAYLEGEYGIKDIFVGVPVVLGKNGVEKIIELDLTDEEKEAFDKSVESVKE 297 (300)
T ss_pred HHHHHHHHHHHcCC-CcEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 67788999999997 89999997 666654 45999999999999999999999999999999999985
No 58
>PLN00106 malate dehydrogenase
Probab=98.69 E-value=4.5e-08 Score=88.17 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=54.8
Q ss_pred chhhcc---CCceeEeEeecCccccccc-eEeeeceEEecceEEEEecC-CCCHHHHHHHHhhHHhHHhhh
Q psy17692 92 EIEDRE---QDRRKPAIHLLGHHGIEEE-VFLSLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKEVF 157 (211)
Q Consensus 92 ~~i~~d---~~~i~~vs~l~G~yGi~~d-V~~s~P~vig~~GV~~Ive~-iLsdeE~~iL~~Sa~~l~~~~ 157 (211)
++|++| +++++|+++++++| +| +|+|+|++||++|+.+++++ .|+++|++.|..|++.+++.+
T Consensus 254 ~ail~~~~~~~~v~~~s~~~~~~---~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~ 321 (323)
T PLN00106 254 DACLRGLNGEADVVECSYVQSEV---TELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKASI 321 (323)
T ss_pred HHHHhccCCCceEEEEEEECccc---CCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 667774 66899999888765 45 99999999999999999999 999999999999998877653
No 59
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=98.68 E-value=1.1e-09 Score=97.66 Aligned_cols=66 Identities=24% Similarity=0.386 Sum_probs=58.3
Q ss_pred ceEEEEecCCCCHHHHHHHHhhH--HhHH-h---hhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPLTQEEIEKLKKSA--QAIK-E---VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~-~---~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
..+.++++++++++ +..+++|+ ++.+ + .+-++|++||++||+++++++||++|+++|++||+.||+
T Consensus 233 ~~~~~ii~ail~~~-~~v~~vsv~~~g~~~~~~~~~~svP~~ig~~Gv~~i~~l~l~~~E~~~l~~s~~~i~~ 304 (309)
T cd05294 233 SAISNLVRTIANDE-RRILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVPIEMDDDEREAFRKSAEIVKK 304 (309)
T ss_pred HHHHHHHHHHHCCC-CeEEEEEEEECCccCCCCCeEEEeEEEEcCCccEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 77788999999998 89999998 4444 3 345999999999999999999999999999999999985
No 60
>PRK05086 malate dehydrogenase; Provisional
Probab=98.66 E-value=1.3e-09 Score=97.41 Aligned_cols=81 Identities=14% Similarity=0.154 Sum_probs=65.0
Q ss_pred ceeEeEeec---C--ccccccceEeeeceEEecceEEEEecCCCC---HHHHHHHHhhH---HhHHhhhcccceeecCCc
Q psy17692 100 RRKPAIHLL---G--HHGIEEEVFLSLPCVMADNGVTHIVNQPLT---QEEIEKLKKSA---QAIKEVFLSLPCVMADNG 168 (211)
Q Consensus 100 ~i~~vs~l~---G--~yGi~~dV~~s~P~vig~~GV~~Ive~iLs---deE~~iL~~Sa---~~l~~~~~svP~vlg~~G 168 (211)
+.+.+...+ | .||++ .++.+++++++. ++ ++.++.|. ++.++++-|+|++||++|
T Consensus 209 ~g~~ii~~k~~~g~t~~~~a-------------~a~~~~v~ai~~~~~~~-~~v~~~~~~~~~g~~~v~~s~P~~ig~~G 274 (312)
T PRK05086 209 AGTEVVEAKAGGGSATLSMG-------------QAAARFGLSLVRALQGE-QGVVECAYVEGDGKYARFFAQPVLLGKNG 274 (312)
T ss_pred HHHHHHhcccCCCCchhhHH-------------HHHHHHHHHHHhcCCCC-CcEEEEEEEeccCCcceEEEEEEEEcCCe
Confidence 344455444 5 68998 889999999984 45 68888652 344556679999999999
Q ss_pred eeEEecC-CCCHHHHHHHHHHHHHHHh
Q psy17692 169 VTHIVNQ-PLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 169 v~~ii~l-~L~~~E~~~l~~Sa~~ik~ 194 (211)
+++++++ +||++|+++|++||+.|++
T Consensus 275 v~~i~~~~~L~~~E~~~l~~s~~~i~~ 301 (312)
T PRK05086 275 VEERLPIGTLSAFEQNALEGMLDTLKK 301 (312)
T ss_pred eEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999975
No 61
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.65 E-value=1.3e-09 Score=97.49 Aligned_cols=66 Identities=30% Similarity=0.460 Sum_probs=58.5
Q ss_pred ceEEEEecCCCCHHHHHHHHhhH--HhHHh---hhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKE---VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~---~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
.++.++++++++++ +..+++|+ ++.|+ ++-|+|+++|++||+++++++||++|+++|++|++.|++
T Consensus 238 ~~~~~i~~ail~~~-~~v~~~sv~~~g~yg~~~v~~S~Pv~ig~~Gv~~i~~l~L~~~E~~~L~~s~~~l~~ 308 (315)
T PRK00066 238 MALARITKAILNNE-NAVLPVSAYLEGQYGEEDVYIGVPAVVNRNGIREIVELPLNDDEKQKFAHSADVLKE 308 (315)
T ss_pred HHHHHHHHHHHcCC-CeEEEEEEEeccccCCCCEEEEeEEEEeCCcEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 56778899999987 79999998 66666 344999999999999999999999999999999999985
No 62
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.65 E-value=1.7e-09 Score=96.78 Aligned_cols=81 Identities=16% Similarity=0.216 Sum_probs=63.9
Q ss_pred ceeEeEee---cC--ccccccceEeeeceEEecceEEEEecCCCCH---HHHHHHHhh-H--HhHHhhhcccceeecCCc
Q psy17692 100 RRKPAIHL---LG--HHGIEEEVFLSLPCVMADNGVTHIVNQPLTQ---EEIEKLKKS-A--QAIKEVFLSLPCVMADNG 168 (211)
Q Consensus 100 ~i~~vs~l---~G--~yGi~~dV~~s~P~vig~~GV~~Ive~iLsd---eE~~iL~~S-a--~~l~~~~~svP~vlg~~G 168 (211)
+.+.+..+ +| +||++ .++.++++++|+| + +..++.| . ++..+++-|+|++||++|
T Consensus 209 ~g~~Ii~~k~gkg~t~~~~a-------------~a~~~iv~aIl~~~~~~-~~~~~~s~~~~~g~~~v~~s~P~~ig~~G 274 (310)
T cd01337 209 GGDEVVKAKAGAGSATLSMA-------------YAGARFANSLLRGLKGE-KGVIECAYVESDVTEAPFFATPVELGKNG 274 (310)
T ss_pred HHHHHHhCccCCCCcchhHH-------------HHHHHHHHHHHHhcCCC-cceEEEEEEeccCCCceEEEEEEEEeCCe
Confidence 34445543 35 68998 9999999999955 4 4667777 2 333445669999999999
Q ss_pred eeEEecC-CCCHHHHHHHHHHHHHHHh
Q psy17692 169 VTHIVNQ-PLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 169 v~~ii~l-~L~~~E~~~l~~Sa~~ik~ 194 (211)
|++++++ +||++|+++|++||+.||+
T Consensus 275 v~~i~~l~~L~~~E~~~l~~S~~~i~~ 301 (310)
T cd01337 275 VEKNLGLGKLNDYEKKLLEAALPELKK 301 (310)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999 6999999999999999974
No 63
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=98.63 E-value=1.9e-09 Score=97.06 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=59.5
Q ss_pred ceEEEEecCCCCHH-HHHHHHhhH--Hh-HHhh----hcccceeecCCceeEEec-CCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPLTQE-EIEKLKKSA--QA-IKEV----FLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iLsde-E~~iL~~Sa--~~-l~~~----~~svP~vlg~~Gv~~ii~-l~L~~~E~~~l~~Sa~~ik~ 194 (211)
.++.++++++++|+ .++++++|+ ++ .|+. +-|+|++||++|++++++ ++||++|+++|++||+.||+
T Consensus 243 ~a~~~iv~ail~~~~~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l~L~~~E~~~l~~sa~~lk~ 318 (323)
T TIGR01759 243 NAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGLPLDDFVRGKLDATEDELLE 318 (323)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence 67888999999996 368999997 76 7765 459999999999999999 99999999999999999986
No 64
>PRK05442 malate dehydrogenase; Provisional
Probab=98.57 E-value=2.9e-09 Score=95.95 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=57.2
Q ss_pred ce-EEEEecCCCCHH-HHHHHHhhH--HhHHhh----hcccceeecCCceeEEec-CCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NG-VTHIVNQPLTQE-EIEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~G-V~~Ive~iLsde-E~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~-l~L~~~E~~~l~~Sa~~ik~ 194 (211)
.. +.+++++++++. +++++++|+ ++.|++ +-|+|++|| +|++++++ ++||++|+++|++|++.||+
T Consensus 243 ~~~~~~iv~ail~~~~~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l~L~~~E~~~l~~s~~~l~~ 317 (326)
T PRK05442 243 ANAAIDHVRDWVLGTPEGDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGLEIDDFSREKIDATLAELEE 317 (326)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 66 478999999884 489999998 667765 349999999 99999966 99999999999999999985
No 65
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=98.52 E-value=4.6e-09 Score=94.51 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=57.7
Q ss_pred ceEEEEecCCC--CHHHHHHHHhhH--HhH-Hhh----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPL--TQEEIEKLKKSA--QAI-KEV----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iL--sdeE~~iL~~Sa--~~l-~~~----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
..+.+++++++ +|+ ++++++|+ ++. |++ +-|+|++||++|++.+.+++||++|+++|++||+.||+
T Consensus 243 ~~~~~i~~ai~~~~~~-~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el~L~~~E~~~l~~s~~~lk~ 317 (324)
T TIGR01758 243 KAAVDQMHDWVLGTPE-GTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGLCVDDSSRKKLALTAKELEE 317 (324)
T ss_pred HHHHHHHHHHhcCCCC-CeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 77888999999 676 89999998 666 765 34999999988898888899999999999999999974
No 66
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.47 E-value=8.3e-09 Score=91.27 Aligned_cols=66 Identities=27% Similarity=0.411 Sum_probs=57.3
Q ss_pred ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
..+.++++++|.++ +..+++|+ ++.|+. .-|+||+||++||+++++++||++|+++|++||+.||+
T Consensus 231 ~~~~~ii~ail~~~-~~~~~~~v~~~g~yg~~~~~~s~P~~i~~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~ 301 (307)
T PRK06223 231 ASIAEMVEAILKDK-KRVLPCSAYLEGEYGVKDVYVGVPVKLGKNGVEKIIELELDDEEKAAFDKSVEAVKK 301 (307)
T ss_pred HHHHHHHHHHHcCC-CcEEEEEEEecCcCCCCCeEEEeEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 56677889999886 79999987 555664 34999999999999999999999999999999999984
No 67
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=98.34 E-value=3.7e-08 Score=92.11 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=55.3
Q ss_pred ceEEEEecCCC--CHHHHHHHHhhH--Hh-HHhh----hcccceeecCCceeEEe-cCCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPL--TQEEIEKLKKSA--QA-IKEV----FLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iL--sdeE~~iL~~Sa--~~-l~~~----~~svP~vlg~~Gv~~ii-~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
..+.+++.+++ +|+ ++.+++|+ ++ .|++ +-|+|++||++|+++++ +++||++|+++|++|++.|++
T Consensus 340 ~ai~~~I~ail~~~d~-~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el~L~~~E~~~l~~Sa~~L~~ 415 (444)
T PLN00112 340 VSIADAIKSLVTPTPE-GDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDVEIDDYLRERIKKSEAELLA 415 (444)
T ss_pred HHHHHHHHHHHcCCCC-CeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence 44555667666 887 89999998 66 4774 34999999999999999 799999999999999988853
No 68
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=98.30 E-value=4.4e-08 Score=90.17 Aligned_cols=65 Identities=14% Similarity=0.266 Sum_probs=54.6
Q ss_pred ceEEEEecCCC--CHHHHHHHHhhH--HhH-Hhh----hcccceeecCCceeEEe-cCCCCHHHHHHHHHHHHHHH
Q psy17692 128 NGVTHIVNQPL--TQEEIEKLKKSA--QAI-KEV----FLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAIK 193 (211)
Q Consensus 128 ~GV~~Ive~iL--sdeE~~iL~~Sa--~~l-~~~----~~svP~vlg~~Gv~~ii-~l~L~~~E~~~l~~Sa~~ik 193 (211)
.++.+++..++ +|+ ++++++|+ ++. |++ +-|+|++||++|+++++ +++||++|+++|++|++.|+
T Consensus 284 ~ai~~~i~ai~~g~d~-~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l~L~~~E~~~l~~Sa~~L~ 358 (387)
T TIGR01757 284 VSIADAIKSLVVPTPE-GDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDVSMDDFLRERIRKSEDELL 358 (387)
T ss_pred HHHHHHHHHHhcCCCC-CeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 45566677777 786 79999998 664 774 34999999999999996 99999999999999998874
No 69
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.26 E-value=5.9e-08 Score=84.28 Aligned_cols=66 Identities=30% Similarity=0.482 Sum_probs=56.3
Q ss_pred ceEEEEecCCCCHHHHHHHHhhH--HhHHhh----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
..+.++++++++++ +..+++|+ ++.|++ .-|+||+||++||+++++++|+++|+++|++|++.++.
T Consensus 189 ~~~~~ii~ai~~~~-~~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~~l~~~e~~~l~~s~~~~~~ 260 (263)
T cd00650 189 TSIADLIRSLLNDE-GEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEVGLTDFELEKLQKSADTLKK 260 (263)
T ss_pred HHHHHHHHHHHcCC-CEEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 45566788888886 78999988 666662 34999999999999999999999999999999999874
No 70
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.25 E-value=5.1e-08 Score=91.30 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=59.4
Q ss_pred ceEEEEecCCCCHH-HHHHHHhhH--HhHHhh----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692 128 NGVTHIVNQPLTQE-EIEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 128 ~GV~~Ive~iLsde-E~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
.++..+++.++.++ +.+.+++|+ ++.|++ +-|+|+++|++|++.+++++||++|+++|++|++.|++
T Consensus 372 ~A~~~iv~ail~~t~~~~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~L~L~e~E~~kL~~S~~eL~~ 445 (452)
T cd05295 372 HAIATTLSYWYHGSPPGEIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTDLELSEILREVLKRITSDLIQ 445 (452)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 78888999999986 468999998 777775 34999999999999999999999999999999987764
No 71
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.54 E-value=3.6e-05 Score=71.81 Aligned_cols=63 Identities=11% Similarity=0.021 Sum_probs=52.9
Q ss_pred CCceechhhHH------HHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeecccc
Q psy17692 4 SGKTVSSRKNC------IVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELY 70 (211)
Q Consensus 4 ~~~~~~~~~~~------~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~ 70 (211)
.+.++|.+|++ ++|. +|++||||+| +. ++||+ ++||+.+|+++++| +|| +.||.+
T Consensus 136 ~a~lin~TNP~di~t~a~~~~--~p~~rviG~c--~~--~~r~~--~~ia~~lgv~~~~v~~~v~GlnHg----~~~s~~ 203 (425)
T cd05197 136 DAWYLNFTNPAGEVTEAVRRY--VPPEKAVGLC--NV--PIGVM--EIVAKLLGESEEKVDWQYAGLNHG----IWLNRV 203 (425)
T ss_pred CcEEEecCChHHHHHHHHHHh--CCCCcEEEEC--CC--HHHHH--HHHHHHhCCCHHHeEEEEEeccCe----EeeEeE
Confidence 45667777764 5666 4899999999 88 99999 99999999999999 898 889999
Q ss_pred ccccccccccccCcccc
Q psy17692 71 RPERTVSSRKNCIVPKE 87 (211)
Q Consensus 71 ~i~~~il~~~v~g~pv~ 87 (211)
+++|.|+.
T Consensus 204 ---------~~~G~~l~ 211 (425)
T cd05197 204 ---------RYNGGDVT 211 (425)
T ss_pred ---------EECCeecH
Confidence 77887764
No 72
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=95.35 E-value=0.033 Score=52.33 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=42.3
Q ss_pred chhhccCCceeEeE-eecCccc-cccceEeeeceEEecceEEEEecCCCCHHH
Q psy17692 92 EIEDREQDRRKPAI-HLLGHHG-IEEEVFLSLPCVMADNGVTHIVNQPLTQEE 142 (211)
Q Consensus 92 ~~i~~d~~~i~~vs-~l~G~yG-i~~dV~~s~P~vig~~GV~~Ive~iLsdeE 142 (211)
++|.+|++.+++++ ..+|.|+ +.+|+++++||+||++|+..+---.|.+..
T Consensus 324 ~aI~~d~~~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~vg~lP~~~ 376 (437)
T cd05298 324 ASIAYNTKERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVVGKIPTFY 376 (437)
T ss_pred HHHHcCCCeEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceecccCCCCHHH
Confidence 56788889999999 5788886 337999999999999999998655677763
No 73
>PRK15076 alpha-galactosidase; Provisional
Probab=94.27 E-value=0.026 Score=52.88 Aligned_cols=48 Identities=8% Similarity=0.044 Sum_probs=40.3
Q ss_pred CCceechhhHH---HHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc
Q psy17692 4 SGKTVSSRKNC---IVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV 57 (211)
Q Consensus 4 ~~~~~~~~~~~---~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V 57 (211)
++.++|.+|++ ++-..++|++||||++ +|.||++ +.||+.+|+++++|
T Consensus 140 ~a~iin~tNP~divt~~~~~~~~~rviG~c-~~~~~~~-----~~ia~~l~v~~~~v 190 (431)
T PRK15076 140 DALLLNYVNPMAMNTWAMNRYPGIKTVGLC-HSVQGTA-----EQLARDLGVPPEEL 190 (431)
T ss_pred CeEEEEcCChHHHHHHHHhcCCCCCEEEEC-CCHHHHH-----HHHHHHhCCCHHHe
Confidence 46788899987 3444599999999998 6999987 56799999999999
No 74
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=90.81 E-value=0.12 Score=48.35 Aligned_cols=45 Identities=9% Similarity=0.117 Sum_probs=35.8
Q ss_pred CCceechhhHH------HHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc
Q psy17692 4 SGKTVSSRKNC------IVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV 57 (211)
Q Consensus 4 ~~~~~~~~~~~------~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V 57 (211)
.+..+|.+|++ ++|.+ ++||||++ +. ++|++ ++||+.+|+++++|
T Consensus 137 da~lin~TNP~~ivt~a~~k~~---~~rviGlc--~~--~~r~~--~~ia~~lg~~~~~v 187 (419)
T cd05296 137 DAWLINFTNPAGIVTEAVLRHT---GDRVIGLC--NV--PIGLQ--RRIAELLGVDPEDV 187 (419)
T ss_pred CeEEEEecCHHHHHHHHHHHhc---cCCEEeeC--Cc--HHHHH--HHHHHHhCCCHHHc
Confidence 34566777764 35554 89999997 55 48999 99999999999999
No 75
>KOG1494|consensus
Probab=87.87 E-value=0.8 Score=41.17 Aligned_cols=36 Identities=19% Similarity=0.372 Sum_probs=31.2
Q ss_pred ccceeecCCceeEEecC-CCCHHHHHHHHHHHHHHHh
Q psy17692 159 SLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 159 svP~vlg~~Gv~~ii~l-~L~~~E~~~l~~Sa~~ik~ 194 (211)
+.|..||++||++++.+ +||++|++.|+++...+|.
T Consensus 294 aspv~Lg~~Gv~~v~~l~~lsd~E~~~l~~~~~eLk~ 330 (345)
T KOG1494|consen 294 ATPVTLGKKGVEEVLGLGKLSDYEEKALEAAKPELKK 330 (345)
T ss_pred eceEEecCCceeeecCCCccCHHHHHHHHHHHHHHHH
Confidence 56899999999999854 6999999999998877764
No 76
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=84.00 E-value=0.085 Score=49.63 Aligned_cols=58 Identities=9% Similarity=0.104 Sum_probs=44.1
Q ss_pred ceEEEEecCCCCHHHHHHHHhhH--HhHHh-----hhcccceeecCCceeEEecCCCCHHHHHHHH
Q psy17692 128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKE-----VFLSLPCVMADNGVTHIVNQPLTQEEIEKLK 186 (211)
Q Consensus 128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~-----~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~ 186 (211)
..+.++++++++|+ +..+++|+ ++.++ ..-++||+||++||+.+---+|.+.-...++
T Consensus 317 ~~a~~ii~aI~~d~-~~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~vg~lP~~~~~l~~ 381 (437)
T cd05298 317 EYIVDLAASIAYNT-KERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVVGKIPTFYKGLME 381 (437)
T ss_pred HHHHHHHHHHHcCC-CeEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceecccCCCCHHHHHHHH
Confidence 45667889999988 79999998 44444 3349999999999999966677776554433
No 77
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=83.69 E-value=0.55 Score=43.82 Aligned_cols=44 Identities=11% Similarity=-0.021 Sum_probs=35.0
Q ss_pred CceechhhH------HHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc
Q psy17692 5 GKTVSSRKN------CIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV 57 (211)
Q Consensus 5 ~~~~~~~~~------~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V 57 (211)
+..++.+|+ .++|.++ .|+||++ +. +.|++ +.+|+.+++++++|
T Consensus 139 a~~i~~tNPv~i~t~~~~k~~~---~rviG~c--~~--~~~~~--~~~a~~l~~~~~~v 188 (423)
T cd05297 139 AWLLNYANPMAELTWALNRYTP---IKTVGLC--HG--VQGTA--EQLAKLLGEPPEEV 188 (423)
T ss_pred CEEEEcCChHHHHHHHHHHhCC---CCEEEEC--Cc--HHHHH--HHHHHHhCCCHHHe
Confidence 344455554 4567776 7999998 66 89999 99999999999999
No 78
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=78.03 E-value=1.8 Score=28.57 Aligned_cols=28 Identities=36% Similarity=0.593 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhccccceeecccccc
Q psy17692 180 EEIEKLKKSAQAIKIRDFVKCQVCGKVYK 208 (211)
Q Consensus 180 ~E~~~l~~Sa~~ik~~~~~~~~~~~~~~~ 208 (211)
.+...|++.++.+++-+= +|++||.-+-
T Consensus 4 ~~~~~~~k~i~~l~~~~~-~CPlC~r~l~ 31 (54)
T PF04423_consen 4 SEIEELKKYIEELKEAKG-CCPLCGRPLD 31 (54)
T ss_dssp HHHHHHHHHHHHHTT-SE-E-TTT--EE-
T ss_pred HHHHHHHHHHHHHhcCCC-cCCCCCCCCC
Confidence 456789999999998887 9999998764
No 79
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=71.09 E-value=1.3 Score=23.69 Aligned_cols=11 Identities=45% Similarity=1.337 Sum_probs=9.5
Q ss_pred ceeeccccccc
Q psy17692 199 KCQVCGKVYKA 209 (211)
Q Consensus 199 ~~~~~~~~~~~ 209 (211)
+|..||+.|..
T Consensus 2 ~C~~C~~~f~~ 12 (23)
T PF00096_consen 2 KCPICGKSFSS 12 (23)
T ss_dssp EETTTTEEESS
T ss_pred CCCCCCCccCC
Confidence 69999999964
No 80
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.38 E-value=1.5 Score=30.32 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=14.8
Q ss_pred Hhccccceeeccccccc
Q psy17692 193 KIRDFVKCQVCGKVYKA 209 (211)
Q Consensus 193 k~~~~~~~~~~~~~~~~ 209 (211)
.+-.++.|..||++|+.
T Consensus 44 g~~gev~CPYC~t~y~l 60 (62)
T COG4391 44 GDEGEVVCPYCSTRYRL 60 (62)
T ss_pred CCCCcEecCccccEEEe
Confidence 56789999999999986
No 81
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=68.87 E-value=1.7 Score=24.46 Aligned_cols=14 Identities=36% Similarity=0.883 Sum_probs=10.8
Q ss_pred hccccceeecccccc
Q psy17692 194 IRDFVKCQVCGKVYK 208 (211)
Q Consensus 194 ~~~~~~~~~~~~~~~ 208 (211)
++. -+|+.|+|.|+
T Consensus 12 ~k~-~~C~~C~k~F~ 25 (26)
T PF13465_consen 12 EKP-YKCPYCGKSFS 25 (26)
T ss_dssp SSS-EEESSSSEEES
T ss_pred CCC-CCCCCCcCeeC
Confidence 344 48999999986
No 82
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=67.15 E-value=1.8 Score=22.65 Aligned_cols=11 Identities=36% Similarity=1.364 Sum_probs=7.4
Q ss_pred ceeeccccccc
Q psy17692 199 KCQVCGKVYKA 209 (211)
Q Consensus 199 ~~~~~~~~~~~ 209 (211)
+|+.||+.|..
T Consensus 2 ~C~~C~~~~~~ 12 (24)
T PF13894_consen 2 QCPICGKSFRS 12 (24)
T ss_dssp E-SSTS-EESS
T ss_pred CCcCCCCcCCc
Confidence 69999999864
No 83
>PHA02768 hypothetical protein; Provisional
Probab=64.75 E-value=2.3 Score=28.76 Aligned_cols=12 Identities=33% Similarity=1.356 Sum_probs=9.5
Q ss_pred cccceeecccccc
Q psy17692 196 DFVKCQVCGKVYK 208 (211)
Q Consensus 196 ~~~~~~~~~~~~~ 208 (211)
.| .|+.|||.|.
T Consensus 5 ~y-~C~~CGK~Fs 16 (55)
T PHA02768 5 GY-ECPICGEIYI 16 (55)
T ss_pred cc-CcchhCCeec
Confidence 44 8999999885
No 84
>smart00507 HNHc HNH nucleases.
Probab=59.84 E-value=4.6 Score=24.89 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=14.1
Q ss_pred HHHHhccccceeeccccc
Q psy17692 190 QAIKIRDFVKCQVCGKVY 207 (211)
Q Consensus 190 ~~ik~~~~~~~~~~~~~~ 207 (211)
..+..|| .+|+.||..+
T Consensus 4 ~~~~~r~-~~C~~C~~~~ 20 (52)
T smart00507 4 RLLLHRD-GVCAYCGKPA 20 (52)
T ss_pred HHHHHHC-CCCcCCcCCC
Confidence 4578899 8999999865
No 85
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=59.54 E-value=3.1 Score=25.13 Aligned_cols=16 Identities=31% Similarity=0.787 Sum_probs=13.9
Q ss_pred Hhccccceeecccccc
Q psy17692 193 KIRDFVKCQVCGKVYK 208 (211)
Q Consensus 193 k~~~~~~~~~~~~~~~ 208 (211)
++.||.-|+.||.+|-
T Consensus 17 ~~~~~~~C~~Cg~~~~ 32 (33)
T PF08792_consen 17 KEDDYEVCIFCGSSFP 32 (33)
T ss_pred ecCCeEEcccCCcEee
Confidence 6789999999999873
No 86
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=55.98 E-value=14 Score=26.46 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhcc
Q psy17692 175 QPLTQEEIEKLKKSAQAIKIRD 196 (211)
Q Consensus 175 l~L~~~E~~~l~~Sa~~ik~~~ 196 (211)
++|||+|+..|++--+.+..-|
T Consensus 1 M~LSe~E~r~L~eiEr~L~~~D 22 (82)
T PF11239_consen 1 MPLSEHEQRRLEEIERQLRADD 22 (82)
T ss_pred CCCCHHHHHHHHHHHHHHHhcC
Confidence 4799999999999887776654
No 87
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=53.48 E-value=4.5 Score=32.14 Aligned_cols=16 Identities=38% Similarity=0.953 Sum_probs=9.8
Q ss_pred hccccceeeccccccc
Q psy17692 194 IRDFVKCQVCGKVYKA 209 (211)
Q Consensus 194 ~~~~~~~~~~~~~~~~ 209 (211)
.-||+.|-.|||.||.
T Consensus 69 ~~d~i~clecGk~~k~ 84 (132)
T PF05443_consen 69 TPDYIICLECGKKFKT 84 (132)
T ss_dssp -SS-EE-TBT--EESB
T ss_pred ccCeeEEccCCcccch
Confidence 5799999999999984
No 88
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=51.54 E-value=7.4 Score=31.00 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhccccceeeccccccc
Q psy17692 183 EKLKKSAQAIKIRDFVKCQVCGKVYKA 209 (211)
Q Consensus 183 ~~l~~Sa~~ik~~~~~~~~~~~~~~~~ 209 (211)
++|++..+.-..++|..|+.||+.|..
T Consensus 85 ~~L~~~l~~e~~~~~Y~Cp~C~~~y~~ 111 (147)
T smart00531 85 KRLEDKLEDETNNAYYKCPNCQSKYTF 111 (147)
T ss_pred HHHHHHHhcccCCcEEECcCCCCEeeH
Confidence 344555555556789999999998853
No 89
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=50.87 E-value=6.3 Score=24.79 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=11.6
Q ss_pred ccceeecccccccc
Q psy17692 197 FVKCQVCGKVYKAH 210 (211)
Q Consensus 197 ~~~~~~~~~~~~~~ 210 (211)
.++|.+||-+|-..
T Consensus 13 ~~~C~~CgM~Y~~~ 26 (41)
T PF13878_consen 13 ATTCPTCGMLYSPG 26 (41)
T ss_pred CcCCCCCCCEECCC
Confidence 57999999999653
No 90
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=50.58 E-value=4.9 Score=27.51 Aligned_cols=18 Identities=39% Similarity=1.104 Sum_probs=14.0
Q ss_pred HHHhcc---ccceeecccccc
Q psy17692 191 AIKIRD---FVKCQVCGKVYK 208 (211)
Q Consensus 191 ~ik~~~---~~~~~~~~~~~~ 208 (211)
.+++|| |.+|+-||++|.
T Consensus 8 Kv~~RDGE~~lrCPRC~~~FR 28 (65)
T COG4049 8 KVRDRDGEEFLRCPRCGMVFR 28 (65)
T ss_pred EeeccCCceeeeCCchhHHHH
Confidence 345565 899999999874
No 91
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=49.90 E-value=5.6 Score=31.66 Aligned_cols=14 Identities=43% Similarity=1.099 Sum_probs=12.1
Q ss_pred ccccceeecccccc
Q psy17692 195 RDFVKCQVCGKVYK 208 (211)
Q Consensus 195 ~~~~~~~~~~~~~~ 208 (211)
..|..|+.|||+|-
T Consensus 122 ~~f~~C~~C~kiyW 135 (147)
T PF01927_consen 122 DEFWRCPGCGKIYW 135 (147)
T ss_pred CeEEECCCCCCEec
Confidence 34999999999995
No 92
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=46.50 E-value=6.5 Score=24.51 Aligned_cols=18 Identities=39% Similarity=0.648 Sum_probs=11.6
Q ss_pred Hhccccceeecccccccc
Q psy17692 193 KIRDFVKCQVCGKVYKAH 210 (211)
Q Consensus 193 k~~~~~~~~~~~~~~~~~ 210 (211)
.+..+++|-.|+++|+..
T Consensus 12 ~~~~~a~C~~C~~~~~~~ 29 (45)
T PF02892_consen 12 GDKKKAKCKYCGKVIKYS 29 (45)
T ss_dssp GCSS-EEETTTTEE----
T ss_pred CCcCeEEeCCCCeEEeeC
Confidence 467899999999999863
No 93
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=43.55 E-value=7.4 Score=21.43 Aligned_cols=11 Identities=36% Similarity=1.189 Sum_probs=9.3
Q ss_pred ceeeccccccc
Q psy17692 199 KCQVCGKVYKA 209 (211)
Q Consensus 199 ~~~~~~~~~~~ 209 (211)
+|.+|++.|..
T Consensus 3 ~C~~C~~~F~~ 13 (27)
T PF13912_consen 3 ECDECGKTFSS 13 (27)
T ss_dssp EETTTTEEESS
T ss_pred CCCccCCccCC
Confidence 69999999863
No 94
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=42.15 E-value=24 Score=26.65 Aligned_cols=25 Identities=24% Similarity=0.603 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhccccceeecccc
Q psy17692 182 IEKLKKSAQAIKIRDFVKCQVCGKV 206 (211)
Q Consensus 182 ~~~l~~Sa~~ik~~~~~~~~~~~~~ 206 (211)
..++..+...|.+-.|-.|..||+-
T Consensus 65 l~~i~~AL~ri~~g~yG~C~~Cge~ 89 (110)
T TIGR02420 65 IKKIDEALKRIEDGEYGYCEECGEE 89 (110)
T ss_pred HHHHHHHHHHHhCCCCCchhccCCc
Confidence 4455777777888899999999974
No 95
>PF12677 DUF3797: Domain of unknown function (DUF3797); InterPro: IPR024256 This presumed domain is functionally uncharacterised. This domain family is found in bacteria and viruses, and is approximately 50 amino acids in length. There is a conserved CGN sequence motif.
Probab=41.96 E-value=8.5 Score=25.43 Aligned_cols=12 Identities=33% Similarity=0.963 Sum_probs=9.5
Q ss_pred ccccceeecccc
Q psy17692 195 RDFVKCQVCGKV 206 (211)
Q Consensus 195 ~~~~~~~~~~~~ 206 (211)
+-|.+|++||--
T Consensus 11 ~kY~~Cp~CGN~ 22 (49)
T PF12677_consen 11 NKYCKCPKCGND 22 (49)
T ss_pred hhhccCcccCCc
Confidence 349999999953
No 96
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=41.94 E-value=9.9 Score=21.68 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=10.9
Q ss_pred cccceeeccccccc
Q psy17692 196 DFVKCQVCGKVYKA 209 (211)
Q Consensus 196 ~~~~~~~~~~~~~~ 209 (211)
+-.+|..||..|.|
T Consensus 13 ~~~~Cp~CG~~F~~ 26 (26)
T PF10571_consen 13 SAKFCPHCGYDFEA 26 (26)
T ss_pred hcCcCCCCCCCCcC
Confidence 45689999988865
No 97
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=41.86 E-value=9.9 Score=21.26 Aligned_cols=13 Identities=31% Similarity=1.140 Sum_probs=10.7
Q ss_pred ccceeeccccccc
Q psy17692 197 FVKCQVCGKVYKA 209 (211)
Q Consensus 197 ~~~~~~~~~~~~~ 209 (211)
.+.|..||..|..
T Consensus 2 l~~C~~CgR~F~~ 14 (25)
T PF13913_consen 2 LVPCPICGRKFNP 14 (25)
T ss_pred CCcCCCCCCEECH
Confidence 5789999998853
No 98
>PF15337 Vasculin: Vascular protein family Vasculin-like 1
Probab=41.19 E-value=35 Score=25.64 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=23.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHhccccc
Q psy17692 174 NQPLTQEEIEKLKKSAQAIKIRDFVK 199 (211)
Q Consensus 174 ~l~L~~~E~~~l~~Sa~~ik~~~~~~ 199 (211)
.+|||++|.+.|+.-.+.+|.-.|-|
T Consensus 31 ~~PlTEDElkEF~~kseQlrrNGf~k 56 (97)
T PF15337_consen 31 CLPLTEDELKEFQVKSEQLRRNGFGK 56 (97)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccccc
Confidence 68999999999999999999888866
No 99
>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.
Probab=40.15 E-value=9 Score=24.19 Aligned_cols=13 Identities=38% Similarity=0.782 Sum_probs=11.2
Q ss_pred cccceeecccccc
Q psy17692 196 DFVKCQVCGKVYK 208 (211)
Q Consensus 196 ~~~~~~~~~~~~~ 208 (211)
.++.|.-||..|+
T Consensus 28 ~~~~CpYCg~~yv 40 (40)
T PF10276_consen 28 GPVVCPYCGTRYV 40 (40)
T ss_dssp CEEEETTTTEEEE
T ss_pred CeEECCCCCCEEC
Confidence 6799999999885
No 100
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=39.15 E-value=28 Score=28.16 Aligned_cols=25 Identities=32% Similarity=0.679 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhccccceeecccc
Q psy17692 182 IEKLKKSAQAIKIRDFVKCQVCGKV 206 (211)
Q Consensus 182 ~~~l~~Sa~~ik~~~~~~~~~~~~~ 206 (211)
..++.++..-|.+-.|-.|..||.-
T Consensus 96 L~~I~~AL~Ri~~gtYG~Ce~CGe~ 120 (151)
T PRK10778 96 IKKIEKTLKKVEDEDFGYCESCGVE 120 (151)
T ss_pred HHHHHHHHHHHhCCCCceeccCCCc
Confidence 3566777777889999999999973
No 101
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=39.08 E-value=11 Score=31.17 Aligned_cols=18 Identities=33% Similarity=0.842 Sum_probs=15.1
Q ss_pred HHHhccccceeecccccc
Q psy17692 191 AIKIRDFVKCQVCGKVYK 208 (211)
Q Consensus 191 ~ik~~~~~~~~~~~~~~~ 208 (211)
.....+|--|..|||+|-
T Consensus 124 ~~~~~~f~~C~~CgkiYW 141 (165)
T COG1656 124 YRNYEEFYRCPKCGKIYW 141 (165)
T ss_pred hhcccceeECCCCccccc
Confidence 456689999999999984
No 102
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=38.37 E-value=11 Score=20.94 Aligned_cols=11 Identities=27% Similarity=0.921 Sum_probs=9.1
Q ss_pred ceeeccccccc
Q psy17692 199 KCQVCGKVYKA 209 (211)
Q Consensus 199 ~~~~~~~~~~~ 209 (211)
.|..|+|.|+.
T Consensus 3 ~C~~C~k~f~~ 13 (27)
T PF12171_consen 3 YCDACDKYFSS 13 (27)
T ss_dssp BBTTTTBBBSS
T ss_pred CcccCCCCcCC
Confidence 59999999863
No 103
>smart00355 ZnF_C2H2 zinc finger.
Probab=38.14 E-value=8.1 Score=20.12 Aligned_cols=11 Identities=55% Similarity=1.398 Sum_probs=9.0
Q ss_pred ceeeccccccc
Q psy17692 199 KCQVCGKVYKA 209 (211)
Q Consensus 199 ~~~~~~~~~~~ 209 (211)
+|..|++.|..
T Consensus 2 ~C~~C~~~f~~ 12 (26)
T smart00355 2 RCPECGKVFKS 12 (26)
T ss_pred CCCCCcchhCC
Confidence 69999998754
No 104
>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein. It is also found as the N-terminal domain of desulfoferrodoxin (rbo), a homodimeric non-haem iron protein with 2 Fe atoms per monomer in different oxidation states. This domain binds the ferric rather than the ferrous Fe of desulfoferrodoxin. Neelaredoxin, a monomeric blue non-haem iron protein, lacks this domain.; GO: 0005506 iron ion binding; PDB: 1DFX_A 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1CFW_A 2LK5_B 1DHG_B ....
Probab=37.52 E-value=9.2 Score=23.64 Aligned_cols=15 Identities=40% Similarity=0.977 Sum_probs=8.8
Q ss_pred Hhccccceeeccccc
Q psy17692 193 KIRDFVKCQVCGKVY 207 (211)
Q Consensus 193 k~~~~~~~~~~~~~~ 207 (211)
+...|-||.+||.+.
T Consensus 2 ~~~~~YkC~~CGniV 16 (36)
T PF06397_consen 2 KKGEFYKCEHCGNIV 16 (36)
T ss_dssp -TTEEEE-TTT--EE
T ss_pred CcccEEEccCCCCEE
Confidence 346789999999865
No 105
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=36.32 E-value=40 Score=29.12 Aligned_cols=56 Identities=23% Similarity=0.288 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHhhHHhHH--------hhhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHhc
Q psy17692 137 PLTQEEIEKLKKSAQAIK--------EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIR 195 (211)
Q Consensus 137 iLsdeE~~iL~~Sa~~l~--------~~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~~ 195 (211)
.|+++.|++|..++.... .........+-++|++-+ .++++|+++|++.++-+.+.
T Consensus 218 ~L~~e~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~---~~s~~~~~~~~~~~~~~~~e 281 (286)
T PF03480_consen 218 SLPDEDQEALDDAADEAEARAREYYEAEDEEALKELEENGVTVV---ELSDEELAAWREAAAPVWEE 281 (286)
T ss_dssp HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---EGCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCEEe---CCCHHHHHHHHHHHHHHHHH
Confidence 588998999888873221 112255566777999877 36999999999999877654
No 106
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=36.06 E-value=11 Score=23.11 Aligned_cols=11 Identities=36% Similarity=1.180 Sum_probs=9.0
Q ss_pred ceeeccccccc
Q psy17692 199 KCQVCGKVYKA 209 (211)
Q Consensus 199 ~~~~~~~~~~~ 209 (211)
-|..||++|-.
T Consensus 3 ~C~~Cg~~Yh~ 13 (36)
T PF05191_consen 3 ICPKCGRIYHI 13 (36)
T ss_dssp EETTTTEEEET
T ss_pred CcCCCCCcccc
Confidence 48999999954
No 107
>COG1734 DksA DnaK suppressor protein [Signal transduction mechanisms]
Probab=35.91 E-value=32 Score=26.87 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=26.1
Q ss_pred EecCCCCHHHHHHHHH---HHHHHHhccccceeecccc
Q psy17692 172 IVNQPLTQEEIEKLKK---SAQAIKIRDFVKCQVCGKV 206 (211)
Q Consensus 172 ii~l~L~~~E~~~l~~---Sa~~ik~~~~~~~~~~~~~ 206 (211)
-+.+.+...|++.+++ +...|..-+|..|..||.-
T Consensus 52 ~~~~~~~~r~r~~l~~i~~al~rIe~gtYG~Ce~cG~~ 89 (120)
T COG1734 52 ELELRLRDRERKLLRKIESALDRIEEGTYGICEECGEP 89 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhccCCc
Confidence 3456666777777776 4467889999999999963
No 108
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=32.68 E-value=18 Score=23.35 Aligned_cols=15 Identities=33% Similarity=0.707 Sum_probs=12.8
Q ss_pred cccceeecccccccc
Q psy17692 196 DFVKCQVCGKVYKAH 210 (211)
Q Consensus 196 ~~~~~~~~~~~~~~~ 210 (211)
.++.|..|+++|.+.
T Consensus 17 ~~a~C~~C~~~l~~~ 31 (50)
T smart00614 17 QRAKCKYCGKKLSRS 31 (50)
T ss_pred eEEEecCCCCEeeeC
Confidence 478999999999764
No 109
>PF14149 YhfH: YhfH-like protein
Probab=31.57 E-value=14 Score=23.01 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=18.0
Q ss_pred HHHHHHHHhccccceeeccccc
Q psy17692 186 KKSAQAIKIRDFVKCQVCGKVY 207 (211)
Q Consensus 186 ~~Sa~~ik~~~~~~~~~~~~~~ 207 (211)
..+.+..|.+.--+|..||+..
T Consensus 2 ~~~~eFfrnLp~K~C~~CG~~i 23 (37)
T PF14149_consen 2 ENIVEFFRNLPPKKCTECGKEI 23 (37)
T ss_pred ccHHHHHHhCCCcccHHHHHHH
Confidence 4567788889999999999863
No 110
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=31.40 E-value=17 Score=21.92 Aligned_cols=13 Identities=46% Similarity=0.976 Sum_probs=10.7
Q ss_pred ccceeeccccccc
Q psy17692 197 FVKCQVCGKVYKA 209 (211)
Q Consensus 197 ~~~~~~~~~~~~~ 209 (211)
-+.|..||..|.+
T Consensus 25 ~v~C~~C~~~~~~ 37 (38)
T TIGR02098 25 KVRCGKCGHVWYA 37 (38)
T ss_pred EEECCCCCCEEEe
Confidence 5789999988875
No 111
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=31.36 E-value=16 Score=33.40 Aligned_cols=26 Identities=31% Similarity=0.756 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHHHhccccceeeccccccc
Q psy17692 178 TQEEIEKLKKSAQAIKIRDFVKCQVCGKVYKA 209 (211)
Q Consensus 178 ~~~E~~~l~~Sa~~ik~~~~~~~~~~~~~~~~ 209 (211)
+++-..-| ..++.-| .|.||+|.||.
T Consensus 385 ~p~~~~~F-----~~~~KPY-rCevC~KRYKN 410 (423)
T COG5189 385 SPEKMNIF-----SAKDKPY-RCEVCDKRYKN 410 (423)
T ss_pred Cccccccc-----cccCCce-eccccchhhcc
Confidence 44444555 4566666 59999999984
No 112
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=30.84 E-value=99 Score=25.36 Aligned_cols=58 Identities=29% Similarity=0.398 Sum_probs=31.4
Q ss_pred CCHHHHHHHHhhHHhHHhhhcccceeecCCceeEEecCCCCHHHHHHHHHHHH---HHHhccccc
Q psy17692 138 LTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQ---AIKIRDFVK 199 (211)
Q Consensus 138 LsdeE~~iL~~Sa~~l~~~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~---~ik~~~~~~ 199 (211)
|+++ .+.....+..+....-..|.- .|+..|+-.-+++||.+++...-+ ..++.||.|
T Consensus 3 l~~e-~e~v~~~Akim~~aARTAPK~---kGiDdIv~~lve~Ee~e~iA~rMEelae~k~~~Flk 63 (182)
T COG4739 3 LNPE-SEGVETAAKIMAEAARTAPKS---KGIDDIVIVLVEGEEMEKIAARMEELAEEKDKDFLK 63 (182)
T ss_pred CChh-HHHHHHHHHHHHHHhhcCCcc---CCccceEEEEeCHHHHHHHHHHHHHHHhccchHHHH
Confidence 4444 444444444333333345543 456666555678888777665443 345666655
No 113
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=29.96 E-value=19 Score=21.95 Aligned_cols=12 Identities=42% Similarity=1.018 Sum_probs=8.9
Q ss_pred ccceeecccccc
Q psy17692 197 FVKCQVCGKVYK 208 (211)
Q Consensus 197 ~~~~~~~~~~~~ 208 (211)
-++|..||.+|.
T Consensus 25 ~v~C~~C~~~f~ 36 (36)
T PF13717_consen 25 KVRCSKCGHVFF 36 (36)
T ss_pred EEECCCCCCEeC
Confidence 478888888763
No 114
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=29.82 E-value=19 Score=21.67 Aligned_cols=12 Identities=33% Similarity=0.794 Sum_probs=8.5
Q ss_pred ccceeecccccc
Q psy17692 197 FVKCQVCGKVYK 208 (211)
Q Consensus 197 ~~~~~~~~~~~~ 208 (211)
+.+|.+||-.|.
T Consensus 2 ~~~C~~CG~i~~ 13 (34)
T cd00729 2 VWVCPVCGYIHE 13 (34)
T ss_pred eEECCCCCCEeE
Confidence 457888887764
No 115
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=29.36 E-value=1.4e+02 Score=28.55 Aligned_cols=52 Identities=13% Similarity=0.233 Sum_probs=38.8
Q ss_pred hhhccCCceeEeEe-ecC-ccccccceEeeeceEEecceEEEEecCCCCHHHHH
Q psy17692 93 IEDREQDRRKPAIH-LLG-HHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIE 144 (211)
Q Consensus 93 ~i~~d~~~i~~vs~-l~G-~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~ 144 (211)
++.+|++.++.+.+ -+| --++.+|...=+||+|+++|+.-+..-.|.+.-..
T Consensus 328 Ai~~~~~~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~g~lP~~~~~ 381 (442)
T COG1486 328 AIENNKPSRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAVGDLPEFVKG 381 (442)
T ss_pred HHhcCCceEEEEEcCCCccccCCCCCeEEEeeEEecCCCCcccccCCCCHHHHH
Confidence 44555555555553 456 35777899999999999999999888888888433
No 116
>cd00974 DSRD Desulforedoxin (DSRD) domain; a small non-heme iron domain present in the desulforedoxin (rubredoxin oxidoreductase) and desulfoferrodoxin proteins of some archeael and bacterial methanogens and sulfate/sulfur reducers. Desulforedoxin is a small, single-domain homodimeric protein; each subunit contains an iron atom bound to four cysteinyl sulfur atoms, Fe(S-Cys)4, in a distorted tetrahedral coordination. Its metal center is similar to that found in rubredoxin type proteins. Desulforedoxin is regarded as a potential redox partner for rubredoxin. Desulfoferrodoxin forms a homodimeric protein, with each protomer comprised of two domains, the N-terminal DSRD domain and C-terminal superoxide reductase-like (SORL) domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=29.15 E-value=19 Score=21.36 Aligned_cols=14 Identities=29% Similarity=0.978 Sum_probs=11.1
Q ss_pred ccccceeecccccc
Q psy17692 195 RDFVKCQVCGKVYK 208 (211)
Q Consensus 195 ~~~~~~~~~~~~~~ 208 (211)
..|.||+.||....
T Consensus 2 ~~~ykC~~CGniv~ 15 (34)
T cd00974 2 LEVYKCEICGNIVE 15 (34)
T ss_pred CcEEEcCCCCcEEE
Confidence 36889999998753
No 117
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=29.14 E-value=16 Score=22.28 Aligned_cols=13 Identities=46% Similarity=1.150 Sum_probs=7.3
Q ss_pred cccceeecccccc
Q psy17692 196 DFVKCQVCGKVYK 208 (211)
Q Consensus 196 ~~~~~~~~~~~~~ 208 (211)
||.+|..|||.|.
T Consensus 2 ~~~~C~eC~~~f~ 14 (34)
T PF01286_consen 2 DYPKCDECGKPFM 14 (34)
T ss_dssp S-EE-TTT--EES
T ss_pred CCchHhHhCCHHH
Confidence 6889999999874
No 118
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=28.95 E-value=19 Score=21.33 Aligned_cols=11 Identities=45% Similarity=1.189 Sum_probs=8.5
Q ss_pred cceeecccccc
Q psy17692 198 VKCQVCGKVYK 208 (211)
Q Consensus 198 ~~~~~~~~~~~ 208 (211)
.+|.+||-+|.
T Consensus 2 ~~C~~CGy~y~ 12 (33)
T cd00350 2 YVCPVCGYIYD 12 (33)
T ss_pred EECCCCCCEEC
Confidence 36889998875
No 119
>TIGR00319 desulf_FeS4 desulfoferrodoxin FeS4 iron-binding domain. Neelaredoxin, a monomeric blue non-heme iron protein, lacks this domain.
Probab=28.77 E-value=19 Score=21.39 Aligned_cols=14 Identities=36% Similarity=0.971 Sum_probs=11.6
Q ss_pred ccccceeecccccc
Q psy17692 195 RDFVKCQVCGKVYK 208 (211)
Q Consensus 195 ~~~~~~~~~~~~~~ 208 (211)
..|.||+.||.+..
T Consensus 5 ~~~ykC~~Cgniv~ 18 (34)
T TIGR00319 5 GQVYKCEVCGNIVE 18 (34)
T ss_pred CcEEEcCCCCcEEE
Confidence 67999999998763
No 120
>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....
Probab=27.96 E-value=16 Score=24.50 Aligned_cols=30 Identities=27% Similarity=0.578 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhccccceeecccccccc
Q psy17692 181 EIEKLKKSAQAIKIRDFVKCQVCGKVYKAH 210 (211)
Q Consensus 181 E~~~l~~Sa~~ik~~~~~~~~~~~~~~~~~ 210 (211)
.+...+.|...++.-..+.|+.||..-..|
T Consensus 10 sr~~~Rrs~~~l~~~~l~~c~~cg~~~~~H 39 (56)
T PF01783_consen 10 SRKRMRRSHWKLKAPNLVKCPNCGEPKLPH 39 (56)
T ss_dssp HHHHHHTTTTS--TTSEEESSSSSSEESTT
T ss_pred hHccchhccccccccceeeeccCCCEeccc
Confidence 355666777777888899999999877766
No 121
>TIGR02890 spore_yteA sporulation protein, yteA family. Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to PFAM family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. The function of proteins in this family is unknown. YteA was detected in mature spores of Bacillus subtilis by Kuwana, et al., and appears to be expressed under control of sigma-K.
Probab=27.60 E-value=55 Score=26.66 Aligned_cols=25 Identities=28% Similarity=0.646 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhccccceeecccc
Q psy17692 182 IEKLKKSAQAIKIRDFVKCQVCGKV 206 (211)
Q Consensus 182 ~~~l~~Sa~~ik~~~~~~~~~~~~~ 206 (211)
..++..+..-|.+-.|-.|..||.-
T Consensus 71 L~~Ie~AL~Ri~~G~YG~Ce~CGe~ 95 (159)
T TIGR02890 71 LREIEHALQKIENGTYGICEVCGKP 95 (159)
T ss_pred HHHHHHHHHHHhCCCCCeecccCCc
Confidence 4455666677888899999999963
No 122
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=27.03 E-value=24 Score=28.29 Aligned_cols=15 Identities=33% Similarity=0.716 Sum_probs=13.6
Q ss_pred ccccceeeccccccc
Q psy17692 195 RDFVKCQVCGKVYKA 209 (211)
Q Consensus 195 ~~~~~~~~~~~~~~~ 209 (211)
-||.-|-.|||.||.
T Consensus 74 pD~IicLEDGkkfKS 88 (148)
T COG4957 74 PDYIICLEDGKKFKS 88 (148)
T ss_pred CCeEEEeccCcchHH
Confidence 599999999999984
No 123
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=26.97 E-value=60 Score=24.35 Aligned_cols=28 Identities=21% Similarity=0.561 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcccc------ceeeccccccc
Q psy17692 182 IEKLKKSAQAIKIRDFV------KCQVCGKVYKA 209 (211)
Q Consensus 182 ~~~l~~Sa~~ik~~~~~------~~~~~~~~~~~ 209 (211)
.+.|.+.|..++--+|+ .|.-||-+|..
T Consensus 37 ~~~L~hiak~lkr~g~~Llv~Pa~CkkCGfef~~ 70 (97)
T COG3357 37 YDHLEHIAKSLKRKGKRLLVRPARCKKCGFEFRD 70 (97)
T ss_pred HHHHHHHHHHHHhCCceEEecChhhcccCccccc
Confidence 47788889999998986 79999999864
No 124
>KOG0801|consensus
Probab=26.73 E-value=19 Score=29.91 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=11.6
Q ss_pred Hhccccceeeccccc
Q psy17692 193 KIRDFVKCQVCGKVY 207 (211)
Q Consensus 193 k~~~~~~~~~~~~~~ 207 (211)
.+..-|||+||.|+-
T Consensus 134 ~~~~g~KCPvC~K~V 148 (205)
T KOG0801|consen 134 MDHSGMKCPVCHKVV 148 (205)
T ss_pred eccCCccCCcccccc
Confidence 335669999999974
No 125
>PHA00616 hypothetical protein
Probab=26.39 E-value=20 Score=23.17 Aligned_cols=10 Identities=30% Similarity=1.242 Sum_probs=8.8
Q ss_pred ceeecccccc
Q psy17692 199 KCQVCGKVYK 208 (211)
Q Consensus 199 ~~~~~~~~~~ 208 (211)
+|..||+.|.
T Consensus 3 qC~~CG~~F~ 12 (44)
T PHA00616 3 QCLRCGGIFR 12 (44)
T ss_pred ccchhhHHHh
Confidence 6999999985
No 126
>PF02132 RecR: RecR protein; InterPro: IPR023628 The bacterial protein RecR seems to play a role in a recombinational process of DNA repair []. It may act with RecF and RecO. RecR's structure consists of a N-terminal helix-hairpin-helix (HhH) motif, followed by a Cys4 zinc-finger motif, a Toprim domain and a Walker B motif []. This entry represents the C4-type zinc finger.; PDB: 1VDD_D 2V1C_B.
Probab=26.27 E-value=66 Score=19.96 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhccccceeeccc
Q psy17692 180 EEIEKLKKSAQAIKIRDFVKCQVCGK 205 (211)
Q Consensus 180 ~E~~~l~~Sa~~ik~~~~~~~~~~~~ 205 (211)
||...|.++...+++ ....|++||-
T Consensus 1 e~~~~La~al~~~~~-~i~~C~~C~n 25 (41)
T PF02132_consen 1 EEAEQLADALKEAKE-NIKFCSICGN 25 (41)
T ss_dssp HHHHHHHHHHHHHHH-H-EE-SSS--
T ss_pred CcHHHHHHHHHHHHH-cCCccCCCCC
Confidence 466777777777765 3568999984
No 127
>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis]
Probab=24.84 E-value=82 Score=25.59 Aligned_cols=36 Identities=25% Similarity=0.516 Sum_probs=25.6
Q ss_pred Cc-eeEEecCCCCHHHHHHHHHHHHHHHhccccceeecccc
Q psy17692 167 NG-VTHIVNQPLTQEEIEKLKKSAQAIKIRDFVKCQVCGKV 206 (211)
Q Consensus 167 ~G-v~~ii~l~L~~~E~~~l~~Sa~~ik~~~~~~~~~~~~~ 206 (211)
+| ..-++.=.+++++....-+ -=..-||+|.+||+.
T Consensus 78 d~~~rlvl~g~f~~~~i~~~i~----~yi~~yv~C~~c~s~ 114 (151)
T COG1601 78 DGKGRLVLQGKFSDSEIVNEIE----RYIAEYVKCKECGSP 114 (151)
T ss_pred CCcceEEEEecccHHHHHHHHH----HHHHheeEeccCCCC
Confidence 44 6667788899888754332 234679999999974
No 128
>COG3183 Predicted restriction endonuclease [Defense mechanisms]
Probab=24.73 E-value=36 Score=30.16 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHHHhccccceeeccccccc
Q psy17692 177 LTQEEIEKLKKSAQAIKIRDFVKCQVCGKVYKA 209 (211)
Q Consensus 177 L~~~E~~~l~~Sa~~ik~~~~~~~~~~~~~~~~ 209 (211)
-+..|+.+=.. |+.|.+.. ..|+||+--|-.
T Consensus 177 ~~~yERna~~r-a~~Ia~~G-~vC~vC~fdF~k 207 (272)
T COG3183 177 HNRYERNATLR-AAAIAIHG-TVCDVCEFDFQK 207 (272)
T ss_pred eeeeccChHHH-HHHHHHhC-ceeeecCccHHH
Confidence 34556643322 77899999 999999866543
No 129
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=24.62 E-value=44 Score=24.10 Aligned_cols=31 Identities=35% Similarity=0.562 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHHHHhc-----cccceeeccccc
Q psy17692 177 LTQEEIEKLKKSAQAIKIR-----DFVKCQVCGKVY 207 (211)
Q Consensus 177 L~~~E~~~l~~Sa~~ik~~-----~~~~~~~~~~~~ 207 (211)
|...|..+.+.-....+.+ +-.+|.+|||..
T Consensus 53 l~~~~~~~~~~~l~~~~~~~v~i~~~~~C~vC~k~l 88 (109)
T PF10367_consen 53 LLKSENLQLKYELVKLRSRSVVITESTKCSVCGKPL 88 (109)
T ss_pred HHHhHHHHHHHHHHhhcCceEEECCCCCccCcCCcC
Confidence 3334444444444444444 347899999865
No 130
>TIGR02986 restrict_Alw26I type II restriction endonuclease, Alw26I/Eco31I/Esp3I family. Members of this family are type II restriction endonucleases of the Alw26I/Eco31I/Esp3I family. Characterized specificities of three members are GGTCTC, CGTCTC, and the shared subsequence GTCTC.
Probab=24.56 E-value=28 Score=32.60 Aligned_cols=27 Identities=33% Similarity=0.554 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhccccceeeccccc
Q psy17692 181 EIEKLKKSAQAIKIRDFVKCQVCGKVY 207 (211)
Q Consensus 181 E~~~l~~Sa~~ik~~~~~~~~~~~~~~ 207 (211)
|-..+.+.|..|.=-..--||.|||..
T Consensus 66 ~~~~~s~~ar~IHPT~~kpC~~CG~~m 92 (424)
T TIGR02986 66 ENGRYSKAARLIHPTGVKPCQTCGKTM 92 (424)
T ss_pred cccHHHHHHHHhCCCCCcchHhcCCee
Confidence 334488889999999999999999964
No 131
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=24.04 E-value=28 Score=21.60 Aligned_cols=14 Identities=29% Similarity=0.816 Sum_probs=10.6
Q ss_pred hcccc---ceeeccccc
Q psy17692 194 IRDFV---KCQVCGKVY 207 (211)
Q Consensus 194 ~~~~~---~~~~~~~~~ 207 (211)
.+|++ +|..|+++|
T Consensus 6 ~~~~l~~f~C~~C~~~F 22 (39)
T smart00154 6 KKVGLTGFKCRHCGNLF 22 (39)
T ss_pred CcccccCeECCccCCcc
Confidence 34554 899999988
No 132
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=23.76 E-value=1.7e+02 Score=21.70 Aligned_cols=49 Identities=27% Similarity=0.506 Sum_probs=26.0
Q ss_pred CCHHHHHHHHhhHHhHHhhhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHhccccceee
Q psy17692 138 LTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIRDFVKCQV 202 (211)
Q Consensus 138 LsdeE~~iL~~Sa~~l~~~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~~~~~~~~~ 202 (211)
|+..+++.|..-+..+.- =..||++|+ |+.=.+.++. .+..|.-+|+.+
T Consensus 1 Lt~kqr~~Lr~~ah~l~p-----~v~IGK~Gl--------t~~vi~ei~~---aL~~hELIKVkv 49 (95)
T TIGR00253 1 LTGKQKRHLRGKAHHLKP-----VVLVGKNGL--------TEGVIKEIEQ---ALEHRELIKVKV 49 (95)
T ss_pred CCHHHHHHHHHHhCCCCC-----eEEECCCCC--------CHHHHHHHHH---HHHhCCcEEEEe
Confidence 455555555444332221 257899995 3443444443 566666666654
No 133
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=23.74 E-value=18 Score=24.49 Aligned_cols=29 Identities=21% Similarity=0.481 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhccccceeecccccccc
Q psy17692 182 IEKLKKSAQAIKIRDFVKCQVCGKVYKAH 210 (211)
Q Consensus 182 ~~~l~~Sa~~ik~~~~~~~~~~~~~~~~~ 210 (211)
+...+.|...+..-.+++|+.||..-..|
T Consensus 12 rr~~RRsh~~l~~~~l~~C~~CG~~~~~H 40 (57)
T PRK12286 12 RKRKRRAHFKLKAPGLVECPNCGEPKLPH 40 (57)
T ss_pred hcchhcccccccCCcceECCCCCCccCCe
Confidence 34455666677788899999999876666
No 134
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=23.52 E-value=86 Score=29.82 Aligned_cols=14 Identities=29% Similarity=0.755 Sum_probs=10.8
Q ss_pred ccccceeecccccc
Q psy17692 195 RDFVKCQVCGKVYK 208 (211)
Q Consensus 195 ~~~~~~~~~~~~~~ 208 (211)
.+-.+|++||-+|-
T Consensus 423 ~~~~~c~~c~~~yd 436 (479)
T PRK05452 423 GPRMQCSVCQWIYD 436 (479)
T ss_pred CCeEEECCCCeEEC
Confidence 34457999999985
No 135
>PF14164 YqzH: YqzH-like protein
Probab=23.43 E-value=1.1e+02 Score=21.31 Aligned_cols=21 Identities=43% Similarity=0.406 Sum_probs=16.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHh
Q psy17692 174 NQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 174 ~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
.+|||++|++.|.+.....+.
T Consensus 23 ~~pls~~E~~~L~~~i~~~~~ 43 (64)
T PF14164_consen 23 CMPLSDEEWEELCKHIQERKN 43 (64)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 468999999999887766553
No 136
>PHA02978 hypothetical protein; Provisional
Probab=23.40 E-value=1e+02 Score=23.92 Aligned_cols=47 Identities=11% Similarity=-0.035 Sum_probs=38.0
Q ss_pred chhhHHHHHHhCC-CCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCccCCCceeeecccc
Q psy17692 9 SSRKNCIVRKELY-RPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTVSSGKSCIVRKELY 70 (211)
Q Consensus 9 ~~~~~~~~k~sg~-p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~VeHGds~vp~~S~~ 70 (211)
+|.|+.+-|+.|+ ++..+|||= |+. +.+-....+-.||.-+.-+|.+
T Consensus 33 ~s~n~~m~kll~lrd~~~iigmf--------rln-------kinn~ih~iks~d~iiiy~sy~ 80 (135)
T PHA02978 33 ASINFIMGKLLGLRDKIEIIGMF--------RLN-------KINNCIHHIKSGDEIIIYFSYA 80 (135)
T ss_pred chHhHHHHHHhCccchhheeeee--------eec-------cccchhheeccCCEEEEEEEec
Confidence 6889999999998 899999994 666 4455555567788888888888
No 137
>PF01430 HSP33: Hsp33 protein; InterPro: IPR000397 Hsp33 is a molecular chaperone, distinguished from all other known chaperones by its mode of functional regulation. Its activity is redox regulated. Hsp33 is a cytoplasmically localized protein with highly reactive cysteines that respond quickly to changes in the redox environment. Oxidizing conditions like H2O2 cause disulphide bonds to form in Hsp33, a process that leads to the activation of its chaperone function [].; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0005737 cytoplasm; PDB: 1VZY_B 1VQ0_A 1I7F_A 3M7M_X 1XJH_A 1HW7_A.
Probab=23.35 E-value=42 Score=29.50 Aligned_cols=29 Identities=34% Similarity=0.689 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHHHHHhccccceeecccccc
Q psy17692 176 PLTQEEIEKLKKSAQAIKIRDFVKCQVCGKVYK 208 (211)
Q Consensus 176 ~L~~~E~~~l~~Sa~~ik~~~~~~~~~~~~~~~ 208 (211)
.|..+|.+.+-+- +.--=+.|+.|||.|.
T Consensus 249 ~L~~eel~~i~~e----~~~iev~C~fC~~~Y~ 277 (280)
T PF01430_consen 249 SLGREELEEILEE----NGKIEVTCEFCGKKYR 277 (280)
T ss_dssp TS-HHHHHHHHHH----CSEEEEE-TTT--EEE
T ss_pred hCCHHHHHHHHhc----CCCEEEEeeCCCCEEE
Confidence 4667776655431 1234578999999995
No 138
>cd00498 Hsp33 Heat shock protein 33 (Hsp33): Cytosolic protein that acts as a molecular chaperone under oxidative conditions. In normal (reducing) cytosolic conditions, four conserved Cys residues are coordinated by a Zn ion. Under oxidative stress (such as heat shock), the Cys are reversibly oxidized to disulfide bonds, which causes the chaperone activity to be turned on. Hsp33 is homodimeric in its functional form.
Probab=23.13 E-value=32 Score=30.28 Aligned_cols=28 Identities=29% Similarity=0.565 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhc--cccceeecccccc
Q psy17692 175 QPLTQEEIEKLKKSAQAIKIR--DFVKCQVCGKVYK 208 (211)
Q Consensus 175 l~L~~~E~~~l~~Sa~~ik~~--~~~~~~~~~~~~~ 208 (211)
..|.++|.+.+- ++- ==+.|+.||+.|.
T Consensus 244 ~~Lg~~El~~i~------~e~g~iev~C~FC~~~Y~ 273 (275)
T cd00498 244 LTLGKEELADMI------EEDGGIEVTCEFCGEKYH 273 (275)
T ss_pred HhCCHHHHHHHH------HcCCCEEEEEeCCCCEEe
Confidence 346677766654 232 2489999999996
No 139
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=22.84 E-value=27 Score=18.67 Aligned_cols=10 Identities=30% Similarity=1.089 Sum_probs=8.4
Q ss_pred ceeecccccc
Q psy17692 199 KCQVCGKVYK 208 (211)
Q Consensus 199 ~~~~~~~~~~ 208 (211)
.|.+|++.|.
T Consensus 2 ~C~~C~~~f~ 11 (25)
T PF12874_consen 2 YCDICNKSFS 11 (25)
T ss_dssp EETTTTEEES
T ss_pred CCCCCCCCcC
Confidence 5999999875
No 140
>cd00085 HNHc HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.
Probab=22.76 E-value=43 Score=20.70 Aligned_cols=15 Identities=40% Similarity=0.749 Sum_probs=10.9
Q ss_pred HHHhccccceeecccc
Q psy17692 191 AIKIRDFVKCQVCGKV 206 (211)
Q Consensus 191 ~ik~~~~~~~~~~~~~ 206 (211)
.+..|| -+|+.||..
T Consensus 6 ~~~~~~-~~C~~c~~~ 20 (57)
T cd00085 6 VLLARD-GLCPYCGKP 20 (57)
T ss_pred HHHHhC-CcCccCCCc
Confidence 345566 699999974
No 141
>TIGR00323 eIF-6 translation initiation factor eIF-6, putative. This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.
Probab=22.69 E-value=1.5e+02 Score=25.41 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=35.8
Q ss_pred EecCCCCHHHHHHHHhhH--HhHHhhhcccc-----eeecCCceeEEecCCCCHHHHHHHHH
Q psy17692 133 IVNQPLTQEEIEKLKKSA--QAIKEVFLSLP-----CVMADNGVTHIVNQPLTQEEIEKLKK 187 (211)
Q Consensus 133 Ive~iLsdeE~~iL~~Sa--~~l~~~~~svP-----~vlg~~Gv~~ii~l~L~~~E~~~l~~ 187 (211)
++...++++|.+.+..+. +.....+.+.+ ++++..|. ++.+.++++|.+.+++
T Consensus 107 lv~~~~~~~e~~~i~~~L~v~V~~~~i~~~~~vG~~~v~nN~G~--lvhP~~s~ee~~~i~d 166 (215)
T TIGR00323 107 LASPELDRDTEELISDVLGVEVFRGTIAGLITVGSYAVVTNRGG--LVHPQTSVQEQEELSS 166 (215)
T ss_pred EeCCCCCHHHHHHHHHhcCCcEEEEecccccccceEEEEeCcEE--EECCCCCHHHHHHHHH
Confidence 678889999888887654 22221112222 45555665 7799999999999987
No 142
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.63 E-value=14 Score=26.47 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=18.9
Q ss_pred CCC-CcEEecCCCCcCcccCccchhhhhhh
Q psy17692 21 YRP-ERTVSSGKNCIVPKELFRPERTVSSR 49 (211)
Q Consensus 21 ~p~-~rviG~g~~t~LDs~R~~~~~~la~~ 49 (211)
+.+ +++|+.| |||.|+. +.+++-
T Consensus 18 l~dqeNLi~~G----LDSiR~M--~L~~~w 41 (74)
T COG3433 18 LDDQENLIDYG----LDSIRMM--ALLERW 41 (74)
T ss_pred cCchhhHHHhc----hhHHHHH--HHHHHH
Confidence 444 8999999 9999999 887754
No 143
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=22.44 E-value=5.5 Score=34.14 Aligned_cols=15 Identities=40% Similarity=1.041 Sum_probs=9.9
Q ss_pred ccccceeeccccccc
Q psy17692 195 RDFVKCQVCGKVYKA 209 (211)
Q Consensus 195 ~~~~~~~~~~~~~~~ 209 (211)
-+=..|..|+|-||+
T Consensus 75 ~~K~~C~lc~KlFkg 89 (214)
T PF04959_consen 75 EDKWRCPLCGKLFKG 89 (214)
T ss_dssp SEEEEE-SSS-EESS
T ss_pred CCEECCCCCCcccCC
Confidence 334569999999997
No 144
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=22.44 E-value=31 Score=20.98 Aligned_cols=14 Identities=36% Similarity=0.975 Sum_probs=10.4
Q ss_pred ccccceeecccccc
Q psy17692 195 RDFVKCQVCGKVYK 208 (211)
Q Consensus 195 ~~~~~~~~~~~~~~ 208 (211)
..-++|..|+.+|.
T Consensus 23 ~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 23 GRKVRCPKCGHVFR 36 (37)
T ss_pred CcEEECCCCCcEee
Confidence 34688888888774
No 145
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=22.34 E-value=63 Score=26.09 Aligned_cols=13 Identities=54% Similarity=0.764 Sum_probs=6.3
Q ss_pred CCCCHHHHHHHHH
Q psy17692 175 QPLTQEEIEKLKK 187 (211)
Q Consensus 175 l~L~~~E~~~l~~ 187 (211)
.+||+||++++++
T Consensus 137 ~~LS~EE~eal~~ 149 (151)
T PF14584_consen 137 YPLSEEEKEALEK 149 (151)
T ss_pred ccCCHHHHHHHHH
Confidence 3455555555443
No 146
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=22.31 E-value=22 Score=21.32 Aligned_cols=14 Identities=36% Similarity=0.885 Sum_probs=11.2
Q ss_pred HHhccccceeeccc
Q psy17692 192 IKIRDFVKCQVCGK 205 (211)
Q Consensus 192 ik~~~~~~~~~~~~ 205 (211)
|+.+|=++|..||-
T Consensus 12 ~~~~~~irC~~CG~ 25 (32)
T PF03604_consen 12 LKPGDPIRCPECGH 25 (32)
T ss_dssp BSTSSTSSBSSSS-
T ss_pred cCCCCcEECCcCCC
Confidence 56788899999995
No 147
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=22.07 E-value=54 Score=27.10 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=11.6
Q ss_pred hccccceeecccccc
Q psy17692 194 IRDFVKCQVCGKVYK 208 (211)
Q Consensus 194 ~~~~~~~~~~~~~~~ 208 (211)
+..|-.|+.|++.|.
T Consensus 114 ~~~~Y~Cp~C~~ryt 128 (178)
T PRK06266 114 NNMFFFCPNCHIRFT 128 (178)
T ss_pred CCCEEECCCCCcEEe
Confidence 456888999988774
No 148
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=21.98 E-value=96 Score=29.53 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=26.2
Q ss_pred ccceeecCCceeEEecCCCCHHHHHHHHHHH
Q psy17692 159 SLPCVMADNGVTHIVNQPLTQEEIEKLKKSA 189 (211)
Q Consensus 159 svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa 189 (211)
.+||+|+++|++.+....|.+--...++...
T Consensus 357 Evpc~Vd~~Gi~P~~~g~lP~~~~~l~~~~i 387 (442)
T COG1486 357 EVPCLVDRNGIHPLAVGDLPEFVKGLMHTNI 387 (442)
T ss_pred EeeEEecCCCCcccccCCCCHHHHHHHHHHH
Confidence 7899999999999999999988777665543
No 149
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=21.26 E-value=15 Score=33.87 Aligned_cols=47 Identities=26% Similarity=0.505 Sum_probs=35.3
Q ss_pred ccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHhc--------cccceeecccccccc
Q psy17692 159 SLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIR--------DFVKCQVCGKVYKAH 210 (211)
Q Consensus 159 svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~~--------~~~~~~~~~~~~~~~ 210 (211)
.-|++ .|..+.+.+.|++.|...-++|...|++. ---.|+.|| |++|
T Consensus 311 r~Pt~---~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CG--F~a~ 365 (389)
T COG2956 311 RKPTM---RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCG--FTAH 365 (389)
T ss_pred hCCcH---HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccC--Ccce
Confidence 44555 46888899999999998899998777652 334799998 5555
No 150
>PF09665 RE_Alw26IDE: Type II restriction endonuclease (RE_Alw26IDE); InterPro: IPR014328 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction endonucleases of the Alw26I/Eco31I/Esp3I family [], whose recognition sequences are 5'-GTCTC-3' (Alw26I), 5'-GGTCTC-3' (Eco31I) and 5'-CGTCTC-3' (Esp3I).
Probab=20.92 E-value=36 Score=32.62 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhccccceeeccccc
Q psy17692 179 QEEIEKLKKSAQAIKIRDFVKCQVCGKVY 207 (211)
Q Consensus 179 ~~E~~~l~~Sa~~ik~~~~~~~~~~~~~~ 207 (211)
+.|-+.+.+.|..|.=-.+--||.||+..
T Consensus 64 ~~~~~~~s~~ar~IHPT~~kpCk~CG~~m 92 (511)
T PF09665_consen 64 PSENGWISKAARLIHPTKQKPCKTCGKIM 92 (511)
T ss_pred CCcccHHHHHHHHhCCCCCcchHhcCCee
Confidence 55667888899999999999999999964
No 151
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=20.90 E-value=36 Score=20.82 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=8.4
Q ss_pred cccceeecccccc
Q psy17692 196 DFVKCQVCGKVYK 208 (211)
Q Consensus 196 ~~~~~~~~~~~~~ 208 (211)
.-..|+.||..|-
T Consensus 31 p~~~C~~CGE~~~ 43 (46)
T TIGR03831 31 PALVCPQCGEEYL 43 (46)
T ss_pred CccccccCCCEee
Confidence 3456888887663
No 152
>KOG2462|consensus
Probab=20.67 E-value=35 Score=30.42 Aligned_cols=10 Identities=40% Similarity=1.374 Sum_probs=6.2
Q ss_pred cceeeccccc
Q psy17692 198 VKCQVCGKVY 207 (211)
Q Consensus 198 ~~~~~~~~~~ 207 (211)
-+|.+|||.|
T Consensus 188 c~C~iCGKaF 197 (279)
T KOG2462|consen 188 CECGICGKAF 197 (279)
T ss_pred cccccccccc
Confidence 3566666665
No 153
>PF13945 NST1: Salt tolerance down-regulator
Probab=20.60 E-value=39 Score=28.49 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=18.7
Q ss_pred cCCCCHHHHHHHHHHH-----HHHHh--ccccceeecccc
Q psy17692 174 NQPLTQEEIEKLKKSA-----QAIKI--RDFVKCQVCGKV 206 (211)
Q Consensus 174 ~l~L~~~E~~~l~~Sa-----~~ik~--~~~~~~~~~~~~ 206 (211)
=+.|+++|+..|-+.= ..||. +----|.|||.-
T Consensus 111 W~SL~eeERr~LVkIEKe~VLkkmKeqq~h~C~C~vCgr~ 150 (190)
T PF13945_consen 111 WESLSEEERRSLVKIEKEAVLKKMKEQQKHSCSCSVCGRK 150 (190)
T ss_pred HHccCHHHHHHHHHhhHHHHHHHHHHHhccCcccHHHhch
Confidence 3467888876664321 22222 233469999974
No 154
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=20.44 E-value=1.2e+02 Score=23.90 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=34.4
Q ss_pred cCCCCHHHHHHHHhhHHhHHhhhc-ccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692 135 NQPLTQEEIEKLKKSAQAIKEVFL-SLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI 194 (211)
Q Consensus 135 e~iLsdeE~~iL~~Sa~~l~~~~~-svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~ 194 (211)
.+.++.+ +.+-..|.+.+..+++ ++|.+| ..-+-.-+||++|.++|++.++.+..
T Consensus 66 ~pL~~~~-~~~~~~~~~~l~k~~d~~~~~lv----~~F~~~~~l~~~eie~L~~il~~~~~ 121 (123)
T COG3682 66 SPLLTRD-QYVAGESQDLLDKICDGGLASLV----AHFAEKEKLTADEIEALKAILDEIEA 121 (123)
T ss_pred ecccCHH-HHHHHHHHHHHHHHHcccchHHH----HHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 5556665 4444445555556665 454433 22233567999999999999887743
No 155
>PRK09458 pspB phage shock protein B; Provisional
Probab=20.42 E-value=1.1e+02 Score=21.96 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=14.1
Q ss_pred CCCHHHHHHHH---HHHHHHHhc
Q psy17692 176 PLTQEEIEKLK---KSAQAIKIR 195 (211)
Q Consensus 176 ~L~~~E~~~l~---~Sa~~ik~~ 195 (211)
.||++|+++|+ +.|+.+++|
T Consensus 35 ~Ls~~d~~~L~~L~~~A~rm~~R 57 (75)
T PRK09458 35 GLSQEEQQRLAQLTEKAERMRER 57 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 48888866665 677777765
No 156
>PLN02294 cytochrome c oxidase subunit Vb
Probab=20.39 E-value=35 Score=28.40 Aligned_cols=11 Identities=27% Similarity=0.963 Sum_probs=9.6
Q ss_pred ceeeccccccc
Q psy17692 199 KCQVCGKVYKA 209 (211)
Q Consensus 199 ~~~~~~~~~~~ 209 (211)
.|..||.+||.
T Consensus 143 RCpeCG~~fkL 153 (174)
T PLN02294 143 ECPVCTQYFEL 153 (174)
T ss_pred eCCCCCCEEEE
Confidence 49999999985
No 157
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=20.34 E-value=1.1e+02 Score=20.94 Aligned_cols=20 Identities=35% Similarity=0.388 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHHHHhc
Q psy17692 176 PLTQEEIEKLKKSAQAIKIR 195 (211)
Q Consensus 176 ~L~~~E~~~l~~Sa~~ik~~ 195 (211)
.||++|++.+.+-|+..+.+
T Consensus 45 ~Ls~~EK~~Y~~~A~~~k~~ 64 (73)
T PF09011_consen 45 SLSEEEKEPYEERAKEDKER 64 (73)
T ss_dssp HS-HHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHH
Confidence 58999999999999888765
No 158
>COG0333 RpmF Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=20.24 E-value=68 Score=21.82 Aligned_cols=29 Identities=24% Similarity=0.536 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhccccceeecccccccc
Q psy17692 182 IEKLKKSAQAIKIRDFVKCQVCGKVYKAH 210 (211)
Q Consensus 182 ~~~l~~Sa~~ik~~~~~~~~~~~~~~~~~ 210 (211)
+..++.|-..++.-.+.+|+.||+.-.+|
T Consensus 12 rr~~RRsh~~l~~~~~~~c~~cG~~~l~H 40 (57)
T COG0333 12 RRRMRRSHDALKAPTLSVCPNCGEYKLPH 40 (57)
T ss_pred hhhhhhhhHhhhCccceeccCCCCcccCc
Confidence 45566777888888999999999987766
Done!