RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17692
(211 letters)
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 72.5 bits (179), Expect = 2e-15
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 106 HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
+ G +GI+E+VFLS+PC++ NG++ +V LT +E +LKKSA + + L
Sbjct: 275 MIKGLYGIKEDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKSADTLWGIQKEL 329
Score = 59.1 bits (144), Expect = 8e-11
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 154 KEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
++VFLS+PC++ NG++ +V LT +E +LKKSA +
Sbjct: 284 EDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKSADTLW 323
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 68.0 bits (167), Expect = 5e-14
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEI-EKLKKSAQAIKEVFLSL 160
G++ I EVFLSLPC++ NGV+ ++ L ++ + EKL+ SA +I + L
Sbjct: 249 GYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIHSLQQQL 301
Score = 55.3 bits (134), Expect = 2e-09
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 154 KEVFLSLPCVMADNGVTHIVNQPLTQEEI-EKLKKSAQAIK 193
EVFLSLPC++ NGV+ ++ L ++ + EKL+ SA +I
Sbjct: 255 SEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIH 295
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 66.7 bits (164), Expect = 2e-13
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 106 HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
G+ E V LSLP ++ GV V L+ EE L++SA+ +KE +L
Sbjct: 255 FTPEVAGVLE-VSLSLPRILGAGGVAGTVYPSLSPEERAALRRSAEILKEAAFAL 308
Score = 61.0 bits (149), Expect = 2e-11
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
+ EV LSLP ++ GV V L+ EE L++SA+ +K
Sbjct: 262 VLEVSLSLPRILGAGGVAGTVYPSLSPEERAALRRSAEILK 302
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 66.7 bits (164), Expect = 2e-13
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
+ +L G +G + V++ +P V+ NG+ ++ L +E + SA +K V
Sbjct: 259 SAYLDGLYGERD-VYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVL 311
Score = 60.6 bits (148), Expect = 2e-11
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
++V++ +P V+ NG+ ++ L +E + SA +K
Sbjct: 268 ERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLK 308
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 66.4 bits (163), Expect = 2e-13
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 106 HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
+ G +GIE+ V +SLP ++ GV ++ LT EE E L+ SA+ +K+V +
Sbjct: 262 VINGMYGIED-VAISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQVKKVLNEV 315
Score = 60.6 bits (148), Expect = 3e-11
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
I++V +SLP ++ GV ++ LT EE E L+ SA+ +K
Sbjct: 269 IEDVAISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQVK 309
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 66.4 bits (163), Expect = 3e-13
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 106 HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
L HGI + + +S+P ++ GV + +N P++ +E+ LK+SA+ +KE
Sbjct: 264 MLKDFHGISD-ICMSVPTLLNRQGVNNTINTPVSDKELAALKRSAETLKETAAQF 317
Score = 61.0 bits (149), Expect = 2e-11
Identities = 13/41 (31%), Positives = 28/41 (68%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
I ++ +S+P ++ GV + +N P++ +E+ LK+SA+ +K
Sbjct: 271 ISDICMSVPTLLNRQGVNNTINTPVSDKELAALKRSAETLK 311
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 65.6 bits (161), Expect = 5e-13
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
+ +L G +G ++ V++ +P V+ G+ I L ++E E+ SA +K +
Sbjct: 258 STYLDGQYGADD-VYIGVPAVVNRGGIAGITELNLNEKEKEQFLHSAGVLKNIL 310
Score = 59.8 bits (146), Expect = 5e-11
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
+V++ +P V+ G+ I L ++E E+ SA +K
Sbjct: 267 ADDVYIGVPAVVNRGGIAGITELNLNEKEKEQFLHSAGVLK 307
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 65.2 bits (160), Expect = 6e-13
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
+++L + G+++ + +S+P + +GV I+ L +EE+E +KSA +K +
Sbjct: 252 SVYLEDYLGVKD-LCISVPVTLGKHGVERILELNLNEEELEAFRKSASILKNAINEI 307
Score = 59.8 bits (146), Expect = 4e-11
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
+K++ +S+P + +GV I+ L +EE+E +KSA +K
Sbjct: 261 VKDLCISVPVTLGKHGVERILELNLNEEELEAFRKSASILK 301
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 65.2 bits (160), Expect = 6e-13
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
+ L G + E+ V++ +P V+ NG+ ++V PL EE K SA+ +K++
Sbjct: 258 SALLEGEYEEED-VYIGVPAVINRNGIRNVVEIPLNDEEQSKFAHSAKTLKDIMAEA 313
Score = 59.8 bits (146), Expect = 5e-11
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
++V++ +P V+ NG+ ++V PL EE K SA+ +K
Sbjct: 267 EEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFAHSAKTLK 307
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 65.2 bits (160), Expect = 7e-13
Identities = 17/54 (31%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
++++ G +G+ + +++ P V+ NG+ +I+ PLT E E ++KSA +K+V
Sbjct: 261 SVYMDGQYGLND-IYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKKVL 313
Score = 59.8 bits (146), Expect = 5e-11
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
+ ++++ P V+ NG+ +I+ PLT E E ++KSA +K
Sbjct: 270 LNDIYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLK 310
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 64.8 bits (159), Expect = 9e-13
Identities = 13/54 (24%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
++ G +G+ + +++ P ++ G+ I+ PL+ +E++K++ SA +K+V
Sbjct: 256 GAYMDGQYGLND-IYIGTPAIIGGTGLKQIIESPLSADELKKMQDSAATLKKVL 308
Score = 59.4 bits (145), Expect = 7e-11
Identities = 10/41 (24%), Positives = 26/41 (63%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
+ ++++ P ++ G+ I+ PL+ +E++K++ SA +K
Sbjct: 265 LNDIYIGTPAIIGGTGLKQIIESPLSADELKKMQDSAATLK 305
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 64.1 bits (157), Expect = 2e-12
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
++ L G G E+ +P + NGV IV L E + + +A+ + + + +
Sbjct: 247 SVKLEGEFGHED-TAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKLSDQYDKI 302
Score = 58.3 bits (142), Expect = 2e-10
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
++ +P + NGV IV L E + + +A+ +
Sbjct: 256 HEDTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKLS 296
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 63.7 bits (156), Expect = 2e-12
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 103 PAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
+G V LSLP V+ GV ++ LT +E +KL++SA ++ L
Sbjct: 249 TVSAPTPEYG----VSLSLPRVVGRQGVLSTLHPKLTGDEQQKLEQSAGVLRGFKQQL 302
Score = 57.5 bits (140), Expect = 3e-10
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 156 VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
V LSLP V+ GV ++ LT +E +KL++SA ++
Sbjct: 259 VSLSLPRVVGRQGVLSTLHPKLTGDEQQKLEQSAGVLR 296
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 63.9 bits (156), Expect = 2e-12
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 106 HLLGHHGIEEEVFLSLPCVMADNGVTH--IVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
+ +GI++ VFLSLPCV+ +NG++H IV L +E ++L+KSA + ++ L
Sbjct: 273 MVKDFYGIKDNVFLSLPCVL-NNGISHCNIVKMKLKPDEEQQLQKSATTLWDIQKDL 328
Score = 50.0 bits (120), Expect = 1e-07
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 155 EVFLSLPCVMADNGVTH--IVNQPLTQEEIEKLKKSAQAIK 193
VFLSLPCV+ +NG++H IV L +E ++L+KSA +
Sbjct: 283 NVFLSLPCVL-NNGISHCNIVKMKLKPDEEQQLQKSATTLW 322
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 63.7 bits (156), Expect = 2e-12
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 114 EEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
+ ++LS P ++ +GV LT +E EKL +S I++ F +
Sbjct: 259 DMGMYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSRDYIQQRFDEI 305
Score = 59.1 bits (144), Expect = 8e-11
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
++LS P ++ +GV LT +E EKL +S I+
Sbjct: 259 DMGMYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSRDYIQ 299
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 60.2 bits (147), Expect = 4e-11
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
++ L G +GIE V + +P + NG + + L+ EEIEKL+ SA+ ++E L
Sbjct: 238 SMILQGEYGIEN-VAVGVPAKLGKNGA-EVADIKLSDEEIEKLRNSAKILRERLEEL 292
Score = 54.4 bits (132), Expect = 3e-09
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
I+ V + +P + NG + + L+ EEIEKL+ SA+ ++
Sbjct: 247 IENVAVGVPAKLGKNGA-EVADIKLSDEEIEKLRNSAKILR 286
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 59.8 bits (146), Expect = 4e-11
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCV 163
A+ L G +GI++ F+ +P + NGV I L Q +++ L+KSA+ + E L
Sbjct: 250 AVGLEGQYGIDK-TFVGVPVKLGRNGVEQIYEINLDQADLDLLQKSAKIVDENCKMLEST 308
Query: 164 MA 165
+
Sbjct: 309 IG 310
Score = 54.0 bits (131), Expect = 5e-09
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
I + F+ +P + NGV I L Q +++ L+KSA+ +
Sbjct: 259 IDKTFVGVPVKLGRNGVEQIYEINLDQADLDLLQKSAKIVD 299
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 57.9 bits (141), Expect = 2e-10
Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCV 163
A + G +G+++ +F+ +P + GV ++ L +E +LK SA + L +
Sbjct: 249 AAYCDGEYGLDD-LFIGVPVKLGAGGVEEVIEVDLDADEKAQLKTSAGHVHSNLDDLQRL 307
Query: 164 MADNGV 169
+ +
Sbjct: 308 RDEGKI 313
Score = 51.4 bits (124), Expect = 4e-08
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
+ ++F+ +P + GV ++ L +E +LK SA +
Sbjct: 258 LDDLFIGVPVKLGAGGVEEVIEVDLDADEKAQLKTSAGHVH 298
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 55.6 bits (135), Expect = 1e-09
Identities = 17/58 (29%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLP 161
+++L G +G + + +P V+ +G+ I+ PLT++E K ++ QA+K++ +LP
Sbjct: 247 SLYLQGEYGYND-IVAEVPAVIGKSGIERIIELPLTEDEKRKFDEAVQAVKKLVETLP 303
Score = 51.0 bits (123), Expect = 6e-08
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
++ +P V+ +G+ I+ PLT++E K ++ QA+K
Sbjct: 256 YNDIVAEVPAVIGKSGIERIIELPLTEDEKRKFDEAVQAVK 296
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 55.2 bits (134), Expect = 2e-09
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
A +L G +G+ + ++ +P ++ GV I+ PL +EE+ L SA+A++ +L
Sbjct: 251 AAYLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAVRATLDTL 306
Score = 50.2 bits (121), Expect = 1e-07
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
+ +++ +P ++ GV I+ PL +EE+ L SA+A++
Sbjct: 260 LNDIYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAVR 300
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 55.2 bits (134), Expect = 2e-09
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
+ H+G++ +++ +P ++ NGV I+ LT E + L +S + + L
Sbjct: 258 SAFCSNHYGVKG-IYMGVPTIIGKNGVEDILELDLTPLEQKLLGESINEVNTISKVL 313
Score = 49.8 bits (120), Expect = 1e-07
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
+K +++ +P ++ NGV I+ LT E + L +S +
Sbjct: 267 VKGIYMGVPTIIGKNGVEDILELDLTPLEQKLLGESINEVN 307
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 55.3 bits (134), Expect = 2e-09
Identities = 13/62 (20%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCV 163
+++ G +G+++ +F+ LP V+ G+ ++ L +EE ++ +KS + + ++ +
Sbjct: 269 SVYCNGEYGLKD-MFIGLPAVIGGAGIERVIELELNEEEKKQFQKSVDDVMALNKAVAAL 327
Query: 164 MA 165
A
Sbjct: 328 QA 329
Score = 50.2 bits (121), Expect = 1e-07
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
+K++F+ LP V+ G+ ++ L +EE ++ +KS +
Sbjct: 278 LKDMFIGLPAVIGGAGIERVIELELNEEEKKQFQKSVDDVM 318
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 54.8 bits (133), Expect = 2e-09
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
+L G +G + ++L +P ++ NG+ I+ L +E E L +S ++++ V L
Sbjct: 259 IAYLEGEYGYSD-LYLGVPVILGGNGIEKIIELELLADEKEALDRSVESVRNVMKVL 314
Score = 49.8 bits (120), Expect = 1e-07
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
+++L +P ++ NG+ I+ L +E E L +S ++++
Sbjct: 268 YSDLYLGVPVILGGNGIEKIIELELLADEKEALDRSVESVR 308
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 54.8 bits (133), Expect = 2e-09
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
A L G +G+++ +++ +P V+ NGV I+ L ++E + KS ++ + +
Sbjct: 261 AAQLSGQYGVKD-MYVGVPTVIGANGVERIIEIDLDKDEKAQFDKSVASVAGLCEAC 316
Score = 49.4 bits (119), Expect = 2e-07
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
+K++++ +P V+ NGV I+ L ++E + KS ++
Sbjct: 270 VKDMYVGVPTVIGANGVERIIEIDLDKDEKAQFDKSVASVA 310
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 54.1 bits (131), Expect = 5e-09
Identities = 13/57 (22%), Positives = 30/57 (52%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
+ ++ G +V + +P + +G+ +V+ L ++EI +KSA+ IK+ +
Sbjct: 254 SAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEIIKKYCEEV 310
Score = 51.4 bits (124), Expect = 4e-08
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
I++V + +P + +G+ +V+ L ++EI +KSA+ IK
Sbjct: 264 IRDVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEIIK 304
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 54.1 bits (131), Expect = 5e-09
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
+ +L G + + +F+ +P V+ NG+ +V L+ +E KS ++I+ + L
Sbjct: 268 STYLTGQYNVNN-LFVGVPVVIGKNGIEDVVIVNLSDDEKSLFSKSVESIQNLVQDL 323
Score = 49.4 bits (119), Expect = 2e-07
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
+ +F+ +P V+ NG+ +V L+ +E KS ++I+
Sbjct: 277 VNNLFVGVPVVIGKNGIEDVVIVNLSDDEKSLFSKSVESIQ 317
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 53.3 bits (129), Expect = 9e-09
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
+ L G +G + +F P V+ NGV ++ L EE K ++ K +
Sbjct: 261 STLLEGQYGHSD-IFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETKRM 312
Score = 49.1 bits (118), Expect = 2e-07
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
++F P V+ NGV ++ L EE K ++ K
Sbjct: 270 HSDIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETK 310
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 52.9 bits (128), Expect = 1e-08
Identities = 15/52 (28%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
G +G++E++F+ +P ++ NGV + ++ +E E+L+ S AIK++ +
Sbjct: 265 GMYGLDEDLFVGVPTEISANGV-RPIEVEISDKEREQLQVSINAIKDLNKAA 315
Score = 43.3 bits (103), Expect = 2e-05
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 154 KEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
+++F+ +P ++ NGV + ++ +E E+L+ S AIK
Sbjct: 271 EDLFVGVPTEISANGV-RPIEVEISDKEREQLQVSINAIK 309
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 2e-06
Identities = 36/185 (19%), Positives = 61/185 (32%), Gaps = 56/185 (30%)
Query: 32 NCIVPKELFRPERTVS-SRKNRPKRTVSSG--KSCIVRKELYRPERTVSSRKNCIVPKEL 88
N +P + V S N K V SG +S LY T+ RK P L
Sbjct: 357 NSHLP-----AGKQVEISLVNGAKNLVVSGPPQS------LYGLNLTL--RKAK-APSGL 402
Query: 89 YCPEIEDREQDR-----RKPAIHLLGHHGIEEEVFL--SLPC---VMADNGVTHIVNQPL 138
+Q R RK FL + P ++ + ++N+ L
Sbjct: 403 --------DQSRIPFSERKLKFSN---------RFLPVASPFHSHLLVP--ASDLINKDL 443
Query: 139 TQEEIEKLKKSAQAIKEVFLSL----PCVMADNGVTHIVNQPLTQEEI--EKLKKSAQAI 192
+ + I V+ + V++ + IV+ + + + E + +A
Sbjct: 444 VKNNVS-FNAKDIQIP-VYDTFDGSDLRVLSGSISERIVDC-IIRLPVKWETTTQ-FKAT 499
Query: 193 KIRDF 197
I DF
Sbjct: 500 HILDF 504
Score = 37.3 bits (86), Expect = 0.003
Identities = 32/196 (16%), Positives = 59/196 (30%), Gaps = 54/196 (27%)
Query: 22 RPERTVSSGK---NCIVPKELFRPERTVSSR--KNRPKRTVSSGKSCIVRKELYRPERTV 76
RP T+S G +VP F + + K P+ T + +
Sbjct: 7 RP-LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPT----------EGFAADDEPT 55
Query: 77 SSRKNCIVPKEL------YC-PEIEDREQDRRKPAIHL-LGHHGIEEEVFLSLPCVMADN 128
+ P EL Y +E + + ++L L E +L N
Sbjct: 56 T-------PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF---ENCYLE------GN 99
Query: 129 GVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKS 188
+ H + L QE L K+ + IK + + +P ++ L ++
Sbjct: 100 DI-HALAAKLLQENDTTLVKTKELIKNYITAR----------IMAKRPFDKKSNSALFRA 148
Query: 189 AQAIKIRDFVKCQVCG 204
+ + G
Sbjct: 149 VGEGNAQLVA---IFG 161
Score = 36.2 bits (83), Expect = 0.006
Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 38/119 (31%)
Query: 104 AIHLLGHHGIE-EEVF--LSL-PCVMAD---NG---------VTHIVNQPLTQEEIEKLK 147
AI +L G+ E + SL P ++ D N ++++ Q Q+ + K
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL-TQEQVQDYVNKTN 357
Query: 148 KSAQAIKEVFLSLPCVMADNGVTHIVNQPLT---------QEEIEKLKKSA---QAIKI 194
A K+V +SL V NG ++V ++ + K K + Q+ +I
Sbjct: 358 SHLPAGKQVEISL--V---NGAKNLV---VSGPPQSLYGLNLTLRKAKAPSGLDQS-RI 407
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 45.3 bits (108), Expect = 4e-06
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 98 QDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPL-TQEEIEKLKKSAQAIKEV 156
+ R PA + G E + +++ + +GV H L + E LK+S + ++
Sbjct: 255 EAFRWPAGCYVNVPGFEH-IMMAMETTITKDGVKHSDINQLGNEAERAALKESYSHLAKL 313
Score = 41.1 bits (97), Expect = 1e-04
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPL-TQEEIEKLKKSAQAIK-IRDFVK 199
+ + +++ + +GV H L + E LK+S + +RD V
Sbjct: 270 FEHIMMAMETTITKDGVKHSDINQLGNEAERAALKESYSHLAKLRDEVI 318
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 42.0 bits (99), Expect = 6e-05
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 104 AIHLLGHH-GIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKE 155
I G+ G+ +++ S P + D + P+ EK+ +A+ + E
Sbjct: 269 GIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAE 321
Score = 35.1 bits (81), Expect = 0.010
Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 154 KEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQA-IKIRDFVK 199
++ S P + D + P+ EK+ +A+ + ++
Sbjct: 281 DDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAEEKETAF 327
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 41.9 bits (99), Expect = 6e-05
Identities = 9/52 (17%), Positives = 17/52 (32%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKE 155
I G +GI E V P + + + E++ + + E
Sbjct: 268 GIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLNELLE 319
Score = 32.7 bits (75), Expect = 0.069
Identities = 4/45 (8%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 156 VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQA-IKIRDFVK 199
V P + + + E++ + ++ ++ V+
Sbjct: 281 VIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLNELLEEQNGVQ 325
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 38.5 bits (90), Expect = 8e-04
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAIKE 155
A+ G +GI E + S P A +G +V + + ++++ +AQ + +
Sbjct: 265 AVPSQGEYGIPEGIVYSFPVT-AKDGAYRVVEGLEINEFARKRMEITAQELLD 316
Score = 31.5 bits (72), Expect = 0.18
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 153 IKEVFLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQA-IKIRDFVK 199
I E + V A +G +V + + ++++ +AQ + + VK
Sbjct: 274 IPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDEMEQVK 322
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 38.2 bits (89), Expect = 0.001
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 112 GIEEEVFLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAIKE 155
GI E++ S+PC +G + + E++KKS +
Sbjct: 303 GIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLA 347
Score = 32.9 bits (75), Expect = 0.071
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 154 KEVFLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQA-IKIRDFVK 199
+++ S+PC +G + + E++KKS + + V
Sbjct: 306 EDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLAEKKCVA 353
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.017
Identities = 36/268 (13%), Positives = 67/268 (25%), Gaps = 92/268 (34%)
Query: 17 RKELYRPERTVSSGKNCIVPK-ELFRPERTVSSRKN----RPKRTVS------SGKSCIV 65
+Y +R N + K + R + + R+ RP + V SGK+ +
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 66 RKELYRPERTVS---------SRKNCIVPKEL--------------YCPE------IEDR 96
++ + + KNC P+ + + I+ R
Sbjct: 168 -LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 97 EQDRRKPAIHLLGHHGIEE--------------EVFLSLPCVM----ADNGVTHIVN--- 135
+ LL E F +L C + VT ++
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAAT 285
Query: 136 ----------QPLTQEE------------IEKLKKSAQAIKEVFLSLPCVMADNGVTHIV 173
LT +E + L + LS+ +G+
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW- 344
Query: 174 NQPLTQEEIEKLKKSAQAIKIRDFVKCQ 201
+KL I +
Sbjct: 345 -DNWKHVNCDKLTTI-----IESSLNVL 366
Score = 32.5 bits (73), Expect = 0.10
Identities = 12/95 (12%), Positives = 29/95 (30%), Gaps = 19/95 (20%)
Query: 110 HHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGV 169
HH ++ E G + + + + K+V +++ +
Sbjct: 4 HHHMDFET-----------GEHQYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEI 51
Query: 170 THIVNQPLTQEEIEKL-----KKSAQAIKIRDFVK 199
HI+ +L K + ++ FV+
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQ--KFVE 84
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 33.7 bits (78), Expect = 0.027
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 114 EEEVFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKE 155
+ F S P ++ NGV + L+ E L+ +K+
Sbjct: 259 QYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKK 301
Score = 33.7 bits (78), Expect = 0.034
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 153 IKEVFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIK--IR---DFVK 199
F S P ++ NGV + L+ E L+ +K I +FV
Sbjct: 259 QYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVN 311
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 31.8 bits (73), Expect = 0.11
Identities = 5/45 (11%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 112 GIEEEVFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKE 155
+ + S P ++ G+ + ++ E + + ++ +K
Sbjct: 257 QETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 301
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 31.5 bits (72), Expect = 0.16
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 157 FLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIK--IR---DFVK 199
F + + NG+ + + PL + E L+K+ + + I F++
Sbjct: 271 FFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR 319
Score = 31.5 bits (72), Expect = 0.18
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 118 FLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKE 155
F + + NG+ + + PL + E L+K+ + +
Sbjct: 271 FFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAG 309
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta,
cobalamin biosynthesis, metal-bindin parallel beta
sheet; HET: SIR; 1.90A {Salmonella enterica} PDB:
1qgo_A*
Length = 264
Score = 28.7 bits (64), Expect = 1.4
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 125 MADNGVTHIVNQPLTQ---EEIEKLKKSAQAIKEVFLSLPC 162
+A G + Q L +E EK+ + Q ++ +F L
Sbjct: 69 LAAQGYQDVAIQSLHIINGDEYEKIVREVQLLRPLFTRLTL 109
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance,
extracellular module, genetic disorder, corneal
dystrophy; HET: NAG; 2.6A {Drosophila melanogaster}
SCOP: b.118.1.1 b.118.1.1
Length = 324
Score = 28.0 bits (62), Expect = 2.0
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 124 VMADNGVTHIVNQPLT 139
V NG HI++ L
Sbjct: 140 VAQTNGYVHIIDHVLG 155
Score = 28.0 bits (62), Expect = 2.0
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 163 VMADNGVTHIVNQPLT 178
V NG HI++ L
Sbjct: 140 VAQTNGYVHIIDHVLG 155
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 2.5
Identities = 7/74 (9%), Positives = 20/74 (27%), Gaps = 17/74 (22%)
Query: 86 KELYCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEK 145
+E +++ + + + E + E++EK
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR-----------------QSEQVEK 133
Query: 146 LKKSAQAIKEVFLS 159
K + + + F
Sbjct: 134 NKINNRIADKAFYQ 147
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 3.4
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 8/25 (32%)
Query: 179 QEEIEKLK---K-----SAQAIKIR 195
++ ++KL+ K SA A+ I+
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIK 43
Score = 26.5 bits (57), Expect = 5.5
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 18/42 (42%)
Query: 66 RKELYRPERTVSSRKNCIVPKELYCPEIEDREQDRRKPAIHL 107
++ L + + +S K LY + PA+ +
Sbjct: 19 KQALKKLQ---ASLK-------LYADD--------SAPALAI 42
Score = 26.1 bits (56), Expect = 7.6
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 10/25 (40%)
Query: 140 QEEIEKLKKS----------AQAIK 154
++ ++KL+ S A AIK
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIK 43
>2vxp_A Transforming growth factor-beta-induced protein IG-H3;
RGD-containing collagen-associated protein, FAS1, BIGH3,
vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens}
PDB: 1x3b_A
Length = 132
Score = 26.5 bits (59), Expect = 3.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 124 VMADNGVTHIVNQPL 138
+MA NGV H++ L
Sbjct: 117 IMATNGVVHVITNVL 131
Score = 26.5 bits (59), Expect = 3.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 163 VMADNGVTHIVNQPL 177
+MA NGV H++ L
Sbjct: 117 IMATNGVVHVITNVL 131
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center
for structural genomics, nysgxrc; 1.90A {Escherichia
coli} SCOP: c.1.9.12
Length = 265
Score = 27.1 bits (61), Expect = 4.2
Identities = 11/64 (17%), Positives = 17/64 (26%), Gaps = 8/64 (12%)
Query: 125 MADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGV-THIVNQPLTQEEIE 183
A V + T ++ V S GV N P E++
Sbjct: 29 AAARDVKFCLAVATTLPSYLHMRDLVGERDNVVFSC-------GVHPLNQNDPYDVEDLR 81
Query: 184 KLKK 187
+L
Sbjct: 82 RLAA 85
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 26.5 bits (59), Expect = 6.2
Identities = 9/64 (14%), Positives = 25/64 (39%), Gaps = 11/64 (17%)
Query: 133 IVNQPLTQEEIEKLKKSAQAI----------KEVFLSLPCVMADNG-VTHIVNQPLTQEE 181
+ ++ T EE ++L + + + KE+ +M G ++ + E
Sbjct: 29 MGSKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAE 88
Query: 182 IEKL 185
++ +
Sbjct: 89 VDHI 92
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 26.2 bits (58), Expect = 9.2
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 10/55 (18%)
Query: 103 PAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
+ HGI+ + L+ EE++ + + + I E +
Sbjct: 326 RELKSRKIHGIKPG--------LTRYFKLSTYG--LSDEEVDYVLNAFKEIIEKY 370
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 25.6 bits (57), Expect = 9.7
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 135 NQPLTQEEIEKLKK--SAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKK 187
+ L+ ++ LK +K++ L+ ++A + L EI L+
Sbjct: 19 HVELSSTLLKNLKNFKKENELKKIALT---IIAKH---------LCDVEINNLRN 61
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis,
nucleotide binding binding, cytoplasm,
nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium
tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A*
2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A*
2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A*
3avo_A* 3avq_A*
Length = 312
Score = 26.0 bits (57), Expect = 9.7
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 134 VNQPLTQEEIEKLKK-----SAQAIKEVFLSL 160
LT+EE+ L+ ++EV+L L
Sbjct: 25 TPLALTEEELVGLRGLGEQIDLLEVEEVYLPL 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.384
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,162,898
Number of extensions: 185798
Number of successful extensions: 1056
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1036
Number of HSP's successfully gapped: 113
Length of query: 211
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 122
Effective length of database: 4,216,824
Effective search space: 514452528
Effective search space used: 514452528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)