RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17692
(211 letters)
>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 172
Score = 56.4 bits (135), Expect = 7e-11
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 106 HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
+ G +GIE EVFLSLPC++ G+T ++NQ L +E+ +LKKSA + ++
Sbjct: 116 MVKGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTLWDI 166
Score = 46.8 bits (110), Expect = 2e-07
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 154 KEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
EVFLSLPC++ G+T ++NQ L +E+ +LKKSA +
Sbjct: 125 NEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTLW 164
>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 152
Score = 55.4 bits (133), Expect = 1e-10
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 96 REQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKE 155
+ P +L E V + +P + NG + + L+ EEIEKL+ SA+ ++E
Sbjct: 87 EDTGEIIPTSMILQGEYGIENVAVGVPAKLGKNGA-EVADIKLSDEEIEKLRNSAKILRE 145
Query: 156 VFLSL 160
L
Sbjct: 146 RLEEL 150
Score = 48.4 bits (115), Expect = 4e-08
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
I+ V + +P + NG + + L+ EEIEKL+ SA+ ++
Sbjct: 105 IENVAVGVPAKLGKNGA-EVADIKLSDEEIEKLRNSAKILR 144
>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 172
Score = 55.6 bits (133), Expect = 2e-10
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 97 EQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
+ + G HGI+EEVFLS+PCV+ ++G+T V +T EE LKKSA + +
Sbjct: 107 LKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKVNMTAEEEGLLKKSADTLWNM 166
Score = 46.4 bits (109), Expect = 4e-07
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 154 KEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
+EVFLS+PCV+ ++G+T V +T EE LKKSA +
Sbjct: 125 EEVFLSIPCVLGESGITDFVKVNMTAEEEGLLKKSADTLW 164
>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate
dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId:
1583]}
Length = 163
Score = 52.9 bits (126), Expect = 1e-09
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 102 KPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
A ++ + + ++LS P ++ +GV LT +E EKL +S I++ F
Sbjct: 101 AHAELVVSNRRDDMGMYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSRDYIQQRF 156
Score = 47.5 bits (112), Expect = 9e-08
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 156 VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
++LS P ++ +GV LT +E EKL +S I+
Sbjct: 116 MYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSRDYIQ 153
>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 168
Score = 53.0 bits (126), Expect = 1e-09
Identities = 13/69 (18%), Positives = 26/69 (37%)
Query: 89 YCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKK 148
++ L E +V++ +P V+ NG+ ++ L +E +
Sbjct: 95 RVTRAILHNENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHH 154
Query: 149 SAQAIKEVF 157
SA +K V
Sbjct: 155 SAATLKSVL 163
Score = 47.6 bits (112), Expect = 1e-07
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
++V++ +P V+ NG+ ++ L +E + SA +K
Sbjct: 120 ERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLK 160
>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium
vibrioforme [TaxId: 1098]}
Length = 163
Score = 52.4 bits (125), Expect = 2e-09
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 54 KRTVSSGKSCIVRKELYRPERTVSSRKNCIVPKELYCPEIEDREQDRRKPAIHLLGHHGI 113
+RT + G + + S+ I + A+ L G +GI
Sbjct: 64 ERTRNGGAEIVEHL------KQGSAFYAPASSVVEMVESIVLDRKRVLPCAVGLEGQYGI 117
Query: 114 EEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKE 155
++ F+ +P + NGV I L Q +++ L+KSA+ + E
Sbjct: 118 DK-TFVGVPVKLGRNGVEQIYEINLDQADLDLLQKSAKIVDE 158
Score = 47.8 bits (113), Expect = 9e-08
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
I + F+ +P + NGV I L Q +++ L+KSA+ +
Sbjct: 117 IDKTFVGVPVKLGRNGVEQIYEINLDQADLDLLQKSAKIVD 157
>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 168
Score = 52.2 bits (124), Expect = 2e-09
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 97 EQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
E+ + ++ G +V + +P + +G+ +V+ L ++EI +KSA+ IK+
Sbjct: 102 EKRLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEIIKKY 161
Score = 48.3 bits (114), Expect = 5e-08
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 6/121 (4%)
Query: 74 RTVSSRKNCIVPKELYCPEIEDREQDRRKPAIHLLGHHGIEE-EVFLSLPCVMADNGVTH 132
++ + P E E + K + G E L V
Sbjct: 44 TSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEK 103
Query: 133 IVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 192
+ + I++V + +P + +G+ +V+ L ++EI +KSA+ I
Sbjct: 104 RLLTLSAY-----VDGEFDGIRDVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEII 158
Query: 193 K 193
K
Sbjct: 159 K 159
>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish
(Squalus acanthias) [TaxId: 7797]}
Length = 169
Score = 52.2 bits (124), Expect = 3e-09
Identities = 20/51 (39%), Positives = 35/51 (68%)
Query: 106 HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
+ +GI++ VFLSLPCV+ D+G+++IV L E ++L+KSA + ++
Sbjct: 113 MVKDFYGIKDNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATTLWDI 163
Score = 42.9 bits (100), Expect = 5e-06
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 154 KEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
VFLSLPCV+ D+G+++IV L E ++L+KSA +
Sbjct: 122 DNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATTLW 161
>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 165
Score = 51.0 bits (121), Expect = 6e-09
Identities = 14/65 (21%), Positives = 25/65 (38%)
Query: 92 EIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQ 151
E ++ + LL ++F P V+ NGV ++ L EE K ++
Sbjct: 97 ESYLKDLKKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIA 156
Query: 152 AIKEV 156
K +
Sbjct: 157 ETKRM 161
Score = 47.9 bits (113), Expect = 8e-08
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
++F P V+ NGV ++ L EE K ++ K
Sbjct: 119 HSDIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETK 159
>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase
{Bifidobacterium longum, strain am101-2 [TaxId: 216816]}
Length = 170
Score = 50.6 bits (120), Expect = 1e-08
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 98 QDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
+R P +L ++ +S+P ++ GV + +N P++ +E+ LK+SA+ +KE
Sbjct: 106 TNRILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINTPVSDKELAALKRSAETLKET 164
Score = 46.4 bits (109), Expect = 3e-07
Identities = 14/72 (19%), Positives = 37/72 (51%)
Query: 122 PCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEE 181
+ + + +++ + + K I ++ +S+P ++ GV + +N P++ +E
Sbjct: 91 IGMSGVDIIEAVLHDTNRILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINTPVSDKE 150
Query: 182 IEKLKKSAQAIK 193
+ LK+SA+ +K
Sbjct: 151 LAALKRSAETLK 162
>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus
aurantiacus [TaxId: 1108]}
Length = 164
Score = 49.7 bits (118), Expect = 2e-08
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 106 HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
+L G +G+ + ++ +P ++ GV I+ PL +EE+ L SA+A++ +L
Sbjct: 110 YLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAVRATLDTL 163
Score = 47.8 bits (113), Expect = 9e-08
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 6/127 (4%)
Query: 74 RTVSSRKNCIVPKELYCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHI 133
T+S +I +R + ++LL P V +
Sbjct: 43 STISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKTGSAY-----YAPAAATAQMVEAV 97
Query: 134 VNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
+ + + +++ +P ++ GV I+ PL +EE+ L SA+A++
Sbjct: 98 LKDKKRVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAVR 157
Query: 194 -IRDFVK 199
D +K
Sbjct: 158 ATLDTLK 164
>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus
pentosus [TaxId: 1589]}
Length = 171
Score = 49.4 bits (117), Expect = 3e-08
Identities = 13/68 (19%), Positives = 34/68 (50%)
Query: 90 CPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKS 149
+ R+++ P + ++++ P ++ G+ I+ PL+ +E++K++ S
Sbjct: 95 ISKAILRDENAVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIESPLSADELKKMQDS 154
Query: 150 AQAIKEVF 157
A +K+V
Sbjct: 155 AATLKKVL 162
Score = 45.2 bits (106), Expect = 9e-07
Identities = 11/49 (22%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK--IRDFVK 199
+ ++++ P ++ G+ I+ PL+ +E++K++ SA +K + D +
Sbjct: 119 LNDIYIGTPAIIGGTGLKQIIESPLSADELKKMQDSAATLKKVLNDGLA 167
>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus
casei [TaxId: 1582]}
Length = 172
Score = 49.4 bits (117), Expect = 3e-08
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 97 EQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
E ++++ G +GI + +++ P V+ NG+ +I+ PLT E E ++KSA +K+V
Sbjct: 104 ENAVLPLSVYMDGQYGIND-LYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKKV 162
Query: 157 F 157
Sbjct: 163 L 163
Score = 45.6 bits (107), Expect = 5e-07
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
I ++++ P V+ NG+ +I+ PLT E E ++KSA +K
Sbjct: 120 INDLYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLK 160
>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 161
Score = 49.1 bits (116), Expect = 3e-08
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 108 LGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
L E+ +P + NGV IV L E + + +A+ + + +
Sbjct: 108 LEGEFGHEDTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKLSDQY 157
Score = 45.6 bits (107), Expect = 5e-07
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
++ +P + NGV IV L E + + +A+ +
Sbjct: 114 HEDTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKLS 154
>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium
thermocellum [TaxId: 1515]}
Length = 169
Score = 48.7 bits (115), Expect = 4e-08
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 97 EQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
+ R + G +GIE+ +SLP ++ GV ++ LT EE E L+ SA+ +K+V
Sbjct: 105 QNTIRTVGTVINGMYGIEDV-AISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQVKKV 163
Query: 157 F 157
Sbjct: 164 L 164
Score = 44.1 bits (103), Expect = 2e-06
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK-IRDFVK 199
I++V +SLP ++ GV ++ LT EE E L+ SA+ +K + + VK
Sbjct: 121 IEDVAISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQVKKVLNEVK 168
>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum
arcticum [TaxId: 87645]}
Length = 171
Score = 48.7 bits (115), Expect = 5e-08
Identities = 9/68 (13%), Positives = 18/68 (26%)
Query: 89 YCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKK 148
+ I G +GI E V P + + + E++
Sbjct: 95 IHDWVLGTAGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINV 154
Query: 149 SAQAIKEV 156
+ + E
Sbjct: 155 TLNELLEE 162
Score = 43.3 bits (101), Expect = 3e-06
Identities = 5/55 (9%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 146 LKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK-IRDFVK 199
S + V P + + + E++ + + ++ V+
Sbjct: 113 SDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLNELLEEQNGVQ 167
>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 179
Score = 47.8 bits (113), Expect = 1e-07
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKE 155
+G+ +++ S P + D + P+ EK+ +A+ + E
Sbjct: 121 NSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAE 167
Score = 41.7 bits (97), Expect = 1e-05
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQA-IKIRDFVK 199
++ S P + D + P+ EK+ +A+ + ++
Sbjct: 126 PDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAEEKETAF 173
>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 172
Score = 47.6 bits (112), Expect = 1e-07
Identities = 15/63 (23%), Positives = 30/63 (47%)
Query: 98 QDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
+ R L + +++ +S+P + +GV I+ L +EE+E +KSA +K
Sbjct: 105 EKRVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILELNLNEEELEAFRKSASILKNAI 164
Query: 158 LSL 160
+
Sbjct: 165 NEI 167
Score = 46.4 bits (109), Expect = 3e-07
Identities = 16/72 (22%), Positives = 32/72 (44%)
Query: 122 PCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEE 181
+ + V I + + +K++ +S+P + +GV I+ L +EE
Sbjct: 90 IALAVADIVESIFFDEKRVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILELNLNEEE 149
Query: 182 IEKLKKSAQAIK 193
+E +KSA +K
Sbjct: 150 LEAFRKSASILK 161
>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 173
Score = 47.4 bits (112), Expect = 1e-07
Identities = 12/63 (19%), Positives = 26/63 (41%)
Query: 93 IEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQA 152
+ E D A+ G +GI E + S P D + + + ++++ +AQ
Sbjct: 100 LGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQE 159
Query: 153 IKE 155
+ +
Sbjct: 160 LLD 162
Score = 39.7 bits (92), Expect = 7e-05
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 157 FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK-IRDFVK 199
S P D + + + ++++ +AQ + + VK
Sbjct: 125 VYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDEMEQVK 168
>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma
gondii [TaxId: 5811]}
Length = 174
Score = 47.2 bits (111), Expect = 2e-07
Identities = 11/62 (17%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 95 DREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 154
+ E+ +++ G +G+++ P V+ G+ ++ L +EE ++ +KS +
Sbjct: 104 NDEKRVIPCSVYCNGEYGLKDMFIGL-PAVIGGAGIERVIELELNEEEKKQFQKSVDDVM 162
Query: 155 EV 156
+
Sbjct: 163 AL 164
Score = 42.5 bits (99), Expect = 7e-06
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
+K++F+ LP V+ G+ ++ L +EE ++ +KS +
Sbjct: 122 LKDMFIGLPAVIGGAGIERVIELELNEEEKKQFQKSVDDVM 162
>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 169
Score = 45.5 bits (107), Expect = 6e-07
Identities = 6/64 (9%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 93 IEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQP-LTQEEIEKLKKSAQ 151
+ D + + + S P ++ G+ + ++ E + + ++
Sbjct: 94 LVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIP 153
Query: 152 AIKE 155
+K
Sbjct: 154 ELKA 157
Score = 37.8 bits (87), Expect = 3e-04
Identities = 16/129 (12%), Positives = 40/129 (31%), Gaps = 9/129 (6%)
Query: 77 SSRKNCIVPKELYCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQ 136
S + + + R Q+ + G + V + +
Sbjct: 42 SQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGK 101
Query: 137 PLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQP-LTQEEIEKLKKSAQAIK-- 193
+E +Q + S P ++ G+ + ++ E + + ++ +K
Sbjct: 102 EGV---VECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKAS 158
Query: 194 IR---DFVK 199
I+ +FVK
Sbjct: 159 IKKGEEFVK 167
>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum
(Sorghum vulgare), chloroplast [TaxId: 4558]}
Length = 188
Score = 43.9 bits (103), Expect = 3e-06
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAIKE 155
+GI E++ S+PC +G + + E++KKS +
Sbjct: 117 NPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLA 164
Score = 36.2 bits (83), Expect = 0.001
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 154 KEVFLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAIK-IRDFVK 199
+++ S+PC +G + + E++KKS + + V
Sbjct: 123 EDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLAEKKCVA 170
>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia
coli [TaxId: 562]}
Length = 167
Score = 40.1 bits (93), Expect = 4e-05
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 110 HHGIEEEVFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKE 155
+ F S P ++ NGV + L+ E L+ +K+
Sbjct: 110 EGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKK 156
Score = 38.5 bits (89), Expect = 1e-04
Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 6/131 (4%)
Query: 75 TVSSRKNCIVPKELYCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIV 134
T+ + + E+ D + + ++ LS+ A G++ +
Sbjct: 36 TILPLLSQVPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVR 95
Query: 135 NQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIK 193
Q +E F S P ++ NGV + L+ E L+ +K
Sbjct: 96 ALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLK 155
Query: 194 --IR---DFVK 199
I +FV
Sbjct: 156 KDIALGQEFVN 166
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 29.1 bits (65), Expect = 0.28
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 141 EEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKL 185
E EK K + ++ ++LP + AD +N +T+ ++E L
Sbjct: 79 EAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESL 123
>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 140
Score = 28.2 bits (62), Expect = 0.45
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 124 VMADNGVTHIVNQPLT 139
V NG HI++ L
Sbjct: 122 VAQTNGYVHIIDHVLG 137
Score = 28.2 bits (62), Expect = 0.45
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 163 VMADNGVTHIVNQPLT 178
V NG HI++ L
Sbjct: 122 VAQTNGYVHIIDHVLG 137
>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 163
Score = 27.8 bits (61), Expect = 0.67
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 124 VMADNGVTHIVNQPL 138
V N ++++ L
Sbjct: 145 VSTANATVYMIDSVL 159
Score = 27.8 bits (61), Expect = 0.67
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 163 VMADNGVTHIVNQPL 177
V N ++++ L
Sbjct: 145 VSTANATVYMIDSVL 159
>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 157
Score = 27.5 bits (60), Expect = 0.94
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 124 VMADNGVTHIVNQPLTQE 141
V NG+ H+++ PL +E
Sbjct: 135 VECTNGIIHVIDYPLLEE 152
Score = 27.5 bits (60), Expect = 0.94
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 163 VMADNGVTHIVNQPLTQE 180
V NG+ H+++ PL +E
Sbjct: 135 VECTNGIIHVIDYPLLEE 152
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus
halodurans [TaxId: 86665]}
Length = 265
Score = 26.6 bits (58), Expect = 2.0
Identities = 11/109 (10%), Positives = 29/109 (26%), Gaps = 16/109 (14%)
Query: 88 LYCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLK 147
+R + R + + P MA ++ ++ QP ++
Sbjct: 169 CVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMA--SLSELLGQPHNVSDVL--- 223
Query: 148 KSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIRD 196
++ + L+ +E ++ I R+
Sbjct: 224 ---LKALMTLQQHG--------ASLLTESLSADEWLLYEQHFARISERN 261
>d3e11a1 d.92.1.17 (A:1-113) Uncharacterized protein Acel_2062
{Acidothermus cellulolyticus [TaxId: 28049]}
Length = 113
Score = 25.8 bits (57), Expect = 2.1
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 85 PKELYCPEIEDREQDRRKPAIHLLGHH-GIEEE 116
C + + RK +H + HH GI++E
Sbjct: 74 TICALCETESEVIDEVRKTVVHEIAHHFGIDDE 106
>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 77
Score = 25.0 bits (55), Expect = 2.5
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 123 CVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEI 182
C M + V + E EK+K+ Q ++ +LP + D G I+ + ++EEI
Sbjct: 14 CQMLEKNAREAVKELGIDAEFEKIKEMDQILEAGLTALPGLAVD-GELKIMGRVASKEEI 72
Query: 183 EKL 185
+K+
Sbjct: 73 KKI 75
>d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator
RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Length = 82
Score = 24.3 bits (52), Expect = 5.4
Identities = 8/65 (12%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 137 PLTQEEIEKLKKSAQAIKEV-------FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSA 189
PLT EE+E+ ++ + ++ ++ ++ + I + + A
Sbjct: 3 PLTAEELERGQRLGELLRSARGDMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVA 62
Query: 190 QAIKI 194
+ + +
Sbjct: 63 RVLDL 67
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 24.8 bits (52), Expect = 8.5
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 139 TQEEIEKLKKSAQAIKEVF 157
T+EE++ LK+ +V
Sbjct: 5 TEEELQALKEIGYICAKVR 23
>d1rjja_ d.58.4.4 (A:) Hypothetical protein AT5G22580 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 111
Score = 24.1 bits (52), Expect = 8.6
Identities = 20/98 (20%), Positives = 27/98 (27%), Gaps = 25/98 (25%)
Query: 125 MADNGVTHIV----NQPLTQEEI----EKLKKSAQAIKEVFLSLPCV---MADNGVTHIV 173
MA +G H+V + +EI E L +K M G TH
Sbjct: 1 MATSGFKHLVVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAF 60
Query: 174 --------------NQPLTQEEIEKLKKSAQAIKIRDF 197
+ PL E I + DF
Sbjct: 61 SMTFENKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDF 98
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 24.8 bits (53), Expect = 9.1
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 139 TQEEIEKLKKSAQAIKEVF 157
T E+IEK++ + + EV
Sbjct: 5 TPEDIEKMRVAGRLAAEVL 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.384
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 790,767
Number of extensions: 37125
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 75
Length of query: 211
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,295,466
Effective search space: 168410580
Effective search space used: 168410580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)