BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17693
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 55/120 (45%), Gaps = 19/120 (15%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
C C C + + +C GL A+P G+ Q + L N I PA +FR+ N
Sbjct: 1 CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFL-HGNRISHVPAASFRACR--N 56
Query: 93 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKN---------------RIHTLHPDACGL 137
L L L + ID AF+GL +L +LDL+ N R+HTLH D CGL
Sbjct: 57 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 116
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 60 RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIE 119
RGL+ +QYL L + N + P D FR G NL +L L I+ + AF GL L
Sbjct: 125 RGLAA-LQYLYL-QDNALQALPDDTFRDLG--NLTHLFLHGNRISSVPERAFRGLHSLDR 180
Query: 120 LDLTKNRIHTLHPDAC-GLCRSMLFFYF 146
L L +NR+ +HP A L R M + F
Sbjct: 181 LLLHQNRVAHVHPHAFRDLGRLMTLYLF 208
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPD 133
GL LH L L C + ++ P F GL L L L N + L PD
Sbjct: 102 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL-PD 145
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 55/120 (45%), Gaps = 19/120 (15%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
C C C + + +C GL A+P G+ Q + L N I PA +FR+ N
Sbjct: 2 CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFL-HGNRISHVPAASFRACR--N 57
Query: 93 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKN---------------RIHTLHPDACGL 137
L L L + ID AF+GL +L +LDL+ N R+HTLH D CGL
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 60 RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIE 119
RGL+ +QYL L + N + P D FR G NL +L L I+ + AF GL L
Sbjct: 126 RGLAA-LQYLYL-QDNALQALPDDTFRDLG--NLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 120 LDLTKNRIHTLHPDAC-GLCRSMLFFYF 146
L L +NR+ +HP A L R M + F
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLF 209
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPD 133
GL LH L L C + ++ P F GL L L L N + L PD
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL-PD 146
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
C C C + + +C GL A+P G+ Q + L N I PA +F+S N
Sbjct: 1 CPGACVC-YNEPKVTTSCPQQGLQAVPTGIPASSQRIFL-HGNRISYVPAASFQSCR--N 56
Query: 93 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKN---------------RIHTLHPDACGL 137
L L L + ID AF+GL +L +LDL+ N +HTLH D CGL
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 60 RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIE 119
RGL+ +QYL L + N + P + FR G NL +L L I + AF GL L
Sbjct: 125 RGLAA-LQYLYL-QDNNLQALPDNTFRDLG--NLTHLFLHGNRIPSVPEHAFRGLHSLDR 180
Query: 120 LDLTKNRIHTLHPDAC-GLCRSMLFFYF 146
L L +N + +HP A L R M + F
Sbjct: 181 LLLHQNHVARVHPHAFRDLGRLMTLYLF 208
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 66 VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125
++ LDL + FR GL +LH L L C + ++ P F GL L L L N
Sbjct: 81 LEQLDLSDNAQLRVVDPTTFR--GLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 138
Query: 126 RIHTLHPD 133
+ L PD
Sbjct: 139 NLQAL-PD 145
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 28 WMTGDCEHLCKCKWTNGRKGAACNNTG--------LSAIPRGLSKDVQYLDLGKCNVIFC 79
W+ G L K + +N + +C+ G L++IP GL++ V+ LDL + +
Sbjct: 9 WVLGVIISLSKEESSN-QASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYI 67
Query: 80 FPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCR 139
+D R VNL L+L I I+ D+FS LG L LDL+ N + L
Sbjct: 68 SNSDLQRC---VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS 124
Query: 140 SMLFF 144
S+ F
Sbjct: 125 SLTFL 129
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 27 EWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFR 86
E M C C+C + C++ GL +P+ L D LDL + N I F+
Sbjct: 19 EPMGPVCPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDL-QNNKITEIKDGDFK 73
Query: 87 STGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYF 146
+ L NLH L+L + I+ I P AF+ L L L L+KN++ L P+ L +
Sbjct: 74 N--LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKMPKTLQELRVHE 130
Query: 147 RESTK 151
E TK
Sbjct: 131 NEITK 135
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 27 EWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFR 86
E M C C+C + C++ GL +P+ L D LDL + N I F+
Sbjct: 19 EPMGPVCPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDL-QNNKITEIKDGDFK 73
Query: 87 STGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYF 146
+ L NLH L+L + I+ I P AF+ L L L L+KN++ L P+ L +
Sbjct: 74 N--LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKMPKTLQELRVHE 130
Query: 147 RESTK 151
E TK
Sbjct: 131 NEITK 135
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 45 RKGAACNNTG-LSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNI 103
R G ++G L++IP GL++ V+ LDL + + +D R VNL L+L I
Sbjct: 6 RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRC---VNLQALVLTSNGI 62
Query: 104 TDIDPDAFSGLGILIELDLTKNRIHTL 130
I+ D+FS LG L LDL+ N + L
Sbjct: 63 NTIEEDSFSSLGSLEHLDLSYNYLSNL 89
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLV 91
+C +C C +N C GLS +P+G+ + +YL+L + N+ AD FR L
Sbjct: 45 NCPSVCSC--SNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM-IQADTFRH--LH 99
Query: 92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125
+L L L +I I+ AF+GL L L+L N
Sbjct: 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133
Score = 32.7 bits (73), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124
+++YL+LG CN+ D T LV L L + + +I P +F GL L +L +
Sbjct: 197 NLKYLNLGMCNI-----KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
Query: 125 NRIHTLHPDA 134
+++ + +A
Sbjct: 252 SQVSLIERNA 261
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPD 133
GL +L L + + ++ I+ +AF GL L+EL+L N + +L D
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 48 AACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
C++ GL A+P+ +S D LDL + N I D F+ GL +L+ L+L + I+ I
Sbjct: 38 VQCSDLGLKAVPKEISPDTTLLDL-QNNDISELRKDDFK--GLQHLYALVLVNNKISKIH 94
Query: 108 PDAFSGLGILIELDLTKNRIHTLHPD 133
AFS L L +L ++KN + + P+
Sbjct: 95 EKAFSPLRKLQKLYISKNHLVEIPPN 120
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 42.7 bits (99), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 25 AEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADA 84
A+E ++ D +C +GR + ++IP GL+ ++ LDL + + D
Sbjct: 24 AQESLSCDASGVC-----DGR------SRSFTSIPSGLTAAMKSLDLSFNKITYIGHGD- 71
Query: 85 FRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFF 144
R+ NL L+LK I I+ DAF LG L LDL+ N + +L G S+ +
Sbjct: 72 LRACA--NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 129
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 55 LSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGL 114
++IP GL+ ++ LDL + + D R+ NL L+LK I I+ DAF L
Sbjct: 17 FTSIPSGLTAAMKSLDLSFNKITYIGHGD-LRACA--NLQVLILKSSRINTIEGDAFYSL 73
Query: 115 GILIELDLTKNRIHTLHPDACGLCRSMLFF 144
G L LDL+ N + +L G S+ +
Sbjct: 74 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
C C+C + + C+ A+P G+ + + LDLGK N I D F S +
Sbjct: 3 CPPRCECSAQD--RAVLCHRKRFVAVPEGIPTETRLLDLGK-NRIKTLNQDEFAS--FPH 57
Query: 93 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
L L L + ++ ++P AF+ L L L L NR+
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL 122
+++ L++G ++++ AF +GL +L L L+ CN+T I +A S L LI L L
Sbjct: 129 NLKSLEVGDNDLVY-ISHRAF--SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 49 ACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
+C+ L +P+ L LDL N+ + T L NLH+LLL ++ I
Sbjct: 24 SCSKQQLPNVPQSLPSYTALLDLSHNNLSRL--RAEWTPTRLTNLHSLLLSHNHLNFISS 81
Query: 109 DAFSGLGILIELDLTKNRIHTL 130
+AF + L LDL+ N +HTL
Sbjct: 82 EAFVPVPNLRYLDLSSNHLHTL 103
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124
+++YLDL ++ D F + L L LLL + +I +D +AF + L +L L++
Sbjct: 89 NLRYLDLSSNHL---HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145
Query: 125 NRI 127
N+I
Sbjct: 146 NQI 148
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 39.7 bits (91), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITD--IDPDAFSGLGILIELDL 122
+++ LDLG + F P DAF+ GL +L L L C ++D + F L L LDL
Sbjct: 74 NLRILDLGSSKIYFLHP-DAFQ--GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
Query: 123 TKNRIHT--LHP 132
+KN+I + LHP
Sbjct: 131 SKNQIRSLYLHP 142
Score = 30.0 bits (66), Expect = 0.50, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 106 IDPDAFSGLGILIELDLTKNRIHTLHPDA 134
ID +AF L L LDL ++I+ LHPDA
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDA 92
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 83 DAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL 122
+AFR+ L NL L L I + PDAF GL L EL L
Sbjct: 67 EAFRN--LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 34 EHLCK-----CKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRST 88
E LCK C N + C++ L+AIP + D + LDL + N + P+ AF
Sbjct: 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDL-QSNKLSSLPSKAFHR- 59
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L L L L D + + F L L L +T N++ L
Sbjct: 60 -LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 25 AEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADA 84
AE C +C C +N C L +P G+S + + L+L + N I ++
Sbjct: 27 AETGSAQTCPSVCSC--SNQFSKVICVRKNLREVPDGISTNTRLLNLHE-NQIQIIKVNS 83
Query: 85 FRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
F+ L +L L L +I I+ AF+GL L L+L NR+ T+
Sbjct: 84 FKH--LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI 127
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPD 133
GL++L L + I I+ +AF L L+E++L N + L D
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLV 91
DC +C C+ T C GL IPR + L L N + +D L
Sbjct: 1 DCPAMCHCEGTT----VDCTGRGLKEIPRDIPLHTTELLLND-NELGRISSDGLFGR-LP 54
Query: 92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
+L L LK +T I+P+AF G + EL L +N+I +
Sbjct: 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 45/117 (38%), Gaps = 7/117 (5%)
Query: 30 TGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTG 89
+ C C C T C N L+++P G+ D Q L L N I F
Sbjct: 3 SAGCPSQCSCDQT----LVNCQNIRLASVPAGIPTDKQRLWLNN-NQITKLEPGVFDH-- 55
Query: 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYF 146
LVNL L +T I F L L +LDL N + ++ A +S+ Y
Sbjct: 56 LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
Query: 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLV 91
C C C +N C L+ +P + + +YL+L + N I D F+ L
Sbjct: 5 SCPAACSC--SNQASRVICTRRELAEVPASIPVNTRYLNLQE-NSIQVIRTDTFKH--LR 59
Query: 92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFR 147
+L L L + I+ AF+GL L L+L NR+ T+ A + + R
Sbjct: 60 HLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124
++ LDLG+ + AF GLVNL L L CN+ DI P+ + L L EL+L+
Sbjct: 132 SLRRLDLGELKRLEYISEAAFE--GLVNLRYLNLGMCNLKDI-PN-LTALVRLEELELSG 187
Query: 125 NRIHTLHP 132
NR+ + P
Sbjct: 188 NRLDLIRP 195
Score = 32.7 bits (73), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124
+++YL+LG CN+ D T LV L L L + I P +F GL L +L L
Sbjct: 157 NLRYLNLGMCNL-----KDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 125 NRIHTLHPDA 134
++ T+ +A
Sbjct: 212 AQVATIERNA 221
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
Query: 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLV 91
C C C +N C L+ +P + + +YL+L + N I D F+ L
Sbjct: 5 SCPAACSC--SNQASRVICTRRELAEVPASIPVNTRYLNLQE-NSIQVIRTDTFKH--LR 59
Query: 92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFR 147
+L L L + I+ AF+GL L L+L NR+ T+ A + + R
Sbjct: 60 HLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 30 TGDCEHLCKCK--WTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRS 87
T E+L K + W + + + +P ++ LDLG+ + AF
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVP-----SLRRLDLGELKRLEYISEAAFE- 153
Query: 88 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
GLVNL L L CN+ DI P+ + L L EL+L+ NR+ + P
Sbjct: 154 -GLVNLRYLNLGMCNLKDI-PN-LTALVRLEELELSGNRLDLIRP 195
Score = 32.7 bits (73), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124
+++YL+LG CN+ D T LV L L L + I P +F GL L +L L
Sbjct: 157 NLRYLNLGMCNL-----KDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 125 NRIHTLHPDA 134
++ T+ +A
Sbjct: 212 AQVATIERNA 221
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
C C C T C + G +++P G+ YLDL + N + P F L +
Sbjct: 1 CPSRCSCSGTT----VECYSQGRTSVPTGIPAQTTYLDL-ETNSLKSLPNGVFDE--LTS 53
Query: 93 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L L L + + F+ L L L+L+ N++ +L
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
C C+C+ T C+N L+ IP + + L L F+ L
Sbjct: 5 CPEKCRCEGTT----VDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKK--LPQ 58
Query: 93 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 131
L + + ITDI+ AF G + E+ LT NR+ +
Sbjct: 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ 97
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
GL +L L+L+ IT + D+F GL + L L N+I T+ P A
Sbjct: 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
CE + C G+K C L ++P G+ D + LDL + A FR GL
Sbjct: 4 CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDA-TFR--GLTK 60
Query: 93 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L L L + + F L L L L N++ +L
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
CE + C G+K C L ++P G+ D + LDL + A FR GL
Sbjct: 4 CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDA-TFR--GLTK 60
Query: 93 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L L L + + F L L L L N++ +L
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
C C C T R CN+ GL+++P G+ L+L + N + P F L
Sbjct: 1 CPSRCSCSGTEIR----CNSKGLTSVPTGIPSSATRLEL-ESNKLQSLPHGVFDK--LTQ 53
Query: 93 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L L L I + F L L L L +N++ +L
Sbjct: 54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQ--YLDLGKCNVIFCFPADAFRSTGL 90
C C C T R C+N GL +P+G+ +DV YLD G + ++ L
Sbjct: 4 CPTECTCLDTVVR----CSNKGLKVLPKGIPRDVTELYLD-GNQFTLVPKELSNYKHLTL 58
Query: 91 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
++L N I+ + +FS + L+ L L+ NR+ + P
Sbjct: 59 IDLSN-----NRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 0.17, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 62 LSKDVQY-------LDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGL 114
+ KD +Y LDL IF A+ F+ L L+ L ++T++ P L
Sbjct: 215 MPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLY---LNGNSLTEL-PAEIKNL 269
Query: 115 GILIELDLTKNRIHTLHPDACGLCRSMLFFYF 146
L LDL+ NR+ +L P G C + +FYF
Sbjct: 270 SNLRVLDLSHNRLTSL-PAELGSCFQLKYFYF 300
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 36 LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFP-ADAFRSTGLVNLH 94
+C+ C+ L+A+P L KD L L + N+++ F A T L L+
Sbjct: 3 ICEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSE-NLLYTFSLATLMPYTRLTQLN 61
Query: 95 NLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L C +T + D L +L LDL+ N++ +L
Sbjct: 62 ---LDRCELTKLQVDG--TLPVLGTLDLSHNQLQSL 92
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 36 LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFP-ADAFRSTGLVNLH 94
+C+ C+ L+A+P L KD L L + N+++ F A T L L+
Sbjct: 3 ICEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSE-NLLYTFSLATLMPYTRLTQLN 61
Query: 95 NLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L C +T + D L +L LDL+ N++ +L
Sbjct: 62 ---LDRCELTKLQVDG--TLPVLGTLDLSHNQLQSL 92
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 36 LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFP-ADAFRSTGLVNLH 94
+C+ C+ L+A+P L KD L L + N+++ F A T L L+
Sbjct: 4 ICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSE-NLLYTFSLATLMPYTRLTQLN 62
Query: 95 NLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L C +T + D L +L LDL+ N++ +L
Sbjct: 63 ---LDRCELTKLQVDG--TLPVLGTLDLSHNQLQSL 93
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 36 LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFP-ADAFRSTGLVNLH 94
+C+ C+ L+A+P L KD L L + N+++ F A T L L+
Sbjct: 3 ICEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSE-NLLYTFSLATLMPYTRLTQLN 61
Query: 95 NLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L C +T + D L +L LDL+ N++ +L
Sbjct: 62 ---LDRCELTKLQVDG--TLPVLGTLDLSHNQLQSL 92
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 36 LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFP-ADAFRSTGLVNLH 94
+C+ C+ L+A+P L KD L L + N+++ F A T L L+
Sbjct: 3 ICEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSE-NLLYTFSLATLMPYTRLTQLN 61
Query: 95 NLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L C +T + D L +L LDL+ N++ +L
Sbjct: 62 ---LDRCELTKLQVDG--TLPVLGTLDLSHNQLQSL 92
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 36 LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFP-ADAFRSTGLVNLH 94
+C+ C+ L+A+P L KD L L + N+++ F A T L L+
Sbjct: 3 ICEVSKVASHLEVNCDKRDLTALPPDLPKDTTILHLSE-NLLYTFSLATLMPYTRLTQLN 61
Query: 95 NLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L C +T + D L +L LDL+ N++ +L
Sbjct: 62 ---LDRCELTKLQVDG--TLPVLGTLDLSHNQLQSL 92
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 36 LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFP-ADAFRSTGLVNLH 94
+C+ C+ L+A+P L KD L L + N+++ F A T L L+
Sbjct: 3 ICEVSKVASHLEVNCDKRDLTALPPDLPKDTTILHLSE-NLLYTFSLATLMPYTRLTQLN 61
Query: 95 NLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L C +T + D L +L LDL+ N++ +L
Sbjct: 62 ---LDRCELTKLQVDG--TLPVLGTLDLSHNQLQSL 92
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 98 LKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSM 141
L+ I I P AFS L +DL+ N+I L PDA RS+
Sbjct: 39 LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 27/109 (24%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
C GL+ IP L + + + L + N I P AF + L + L + I+++ PD
Sbjct: 18 CRGKGLTEIPTNLPETITEIRLEQ-NTIKVIPPGAF--SPYKKLRRIDLSNNQISELAPD 74
Query: 110 AFSGLGILIELDL------------------------TKNRIHTLHPDA 134
AF GL L L L N+I+ L DA
Sbjct: 75 AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDA 123
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 98 LKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSM 141
L+ I I P AFS L +DL+ N+I L PDA RS+
Sbjct: 39 LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 27/109 (24%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
C GL+ IP L + + + L + N I P AF + L + L + I+++ PD
Sbjct: 18 CRGKGLTEIPTNLPETITEIRLEQ-NTIKVIPPGAF--SPYKKLRRIDLSNNQISELAPD 74
Query: 110 AFSGLGILIELDL------------------------TKNRIHTLHPDA 134
AF GL L L L N+I+ L DA
Sbjct: 75 AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDA 123
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 39 CKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCF-PADAFRS-TGLVNLHNL 96
C K C N GLS IP L ++L+ F F P R+ + L+NL L
Sbjct: 5 CIEKEANKTYNCENLGLSEIPDTLPNTTEFLEFS-----FNFLPTIHNRTFSRLMNLTFL 59
Query: 97 LLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
L C I I D F L L LT N +
Sbjct: 60 DLTRCQINWIHEDTFQSHHQLSTLVLTGNPL 90
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 96 LLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
L+L C + ID AF LG + +DL+ N +
Sbjct: 478 LILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL 509
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 0.44, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 80 FPADAFRSTG----LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
FP + T L L L+L C+++ ID AF+ L ++ +DL+ NR+
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
Score = 29.6 bits (65), Expect = 0.76, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 38 KCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLL 97
KC K C N GL+ IP L + L+ NV+ F + L+NL L
Sbjct: 7 KCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEF-SFNVLPTIQNTTF--SRLINLTFLD 63
Query: 98 LKDCNITDIDPDAFSGLGILIELDLTKN 125
L C I I D F L L LT N
Sbjct: 64 LTRCQIYWIHEDTFQSQHRLDTLVLTAN 91
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.6 bits (65), Expect = 0.62, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124
++Q+LDL +C I A+ GL +L NL+L I P +FSGL L L +
Sbjct: 57 ELQWLDLSRCE-IETIEDKAWH--GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113
Query: 125 NRIHTL 130
++ +L
Sbjct: 114 TKLASL 119
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.6 bits (65), Expect = 0.63, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124
++Q+LDL +C I A+ GL +L NL+L I P +FSGL L L +
Sbjct: 52 ELQWLDLSRCE-IETIEDKAWH--GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 108
Query: 125 NRIHTL 130
++ +L
Sbjct: 109 TKLASL 114
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 38 KCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLL 97
KC G + C N GL IP L + L+ N + F + L+NL L
Sbjct: 6 KCTEKEGNRTYNCENLGLREIPDTLPNTTEVLEFS-FNFLPTIQNTTF--SRLINLIFLD 62
Query: 98 LKDCNITDIDPDAFSGLGILIELDLTKN 125
L C I + D F L + LT N
Sbjct: 63 LTRCQINWVHEDTFQSHHQLNTIVLTGN 90
Score = 29.3 bits (64), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 96 LLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
L+L CN+ ID AF GL + LDL+ N +
Sbjct: 480 LILSSCNLLSIDQQAFHGLRNVNHLDLSHNSL 511
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 29.3 bits (64), Expect = 0.90, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 23/45 (51%)
Query: 83 DAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
+ F S LH L L I+ I+ DAFS LG L LDL N I
Sbjct: 378 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 422
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.3 bits (64), Expect = 0.95, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 23/45 (51%)
Query: 83 DAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
+ F S LH L L I+ I+ DAFS LG L LDL N I
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 29.3 bits (64), Expect = 0.96, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 23/45 (51%)
Query: 83 DAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
+ F S LH L L I+ I+ DAFS LG L LDL N I
Sbjct: 383 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 427
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 28.9 bits (63), Expect = 1.2, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 20/73 (27%)
Query: 82 ADAFRSTGLVNLHNLLLKDCNITDIDP--------------------DAFSGLGILIELD 121
AD L NL L L + ITDIDP A SGL L +L+
Sbjct: 98 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLN 157
Query: 122 LTKNRIHTLHPDA 134
+ N++ L P A
Sbjct: 158 FSSNQVTDLKPLA 170
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 36 LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFP-ADAFRSTGLVNLH 94
+C+ C+ L+A+P L KD L L + N+++ F A T L L+
Sbjct: 3 ICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSE-NLLYTFSLATLMPYTRLTQLN 61
Query: 95 NLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L +T + D L +L LDL+ N++ +L
Sbjct: 62 ---LDRAELTKLQVDG--TLPVLGTLDLSHNQLQSL 92
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 28.5 bits (62), Expect = 1.5, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 80 FPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
F D F T L NL L L C + + P AF+ L L L++ N++ ++ PD
Sbjct: 461 FLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV-PDG 512
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 36 LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFP-ADAFRSTGLVNLH 94
+C+ C+ L+A+P L KD L L + N+++ F A T L L+
Sbjct: 3 ICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSE-NLLYTFSLATLMPYTRLTQLN 61
Query: 95 NLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L +T + D L +L LDL+ N++ +L
Sbjct: 62 ---LDRAELTKLQVDG--TLPVLGTLDLSHNQLQSL 92
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 36 LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFP-ADAFRSTGLVNLH 94
+C+ C+ L+A+P L KD L L + N+++ F A T L L+
Sbjct: 3 ICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSE-NLLYTFSLATLMPYTRLTQLN 61
Query: 95 NLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L +T + D L +L LDL+ N++ +L
Sbjct: 62 ---LDRAELTKLQVDG--TLPVLGTLDLSHNQLQSL 92
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 28.1 bits (61), Expect = 1.9, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 20/73 (27%)
Query: 82 ADAFRSTGLVNLHNLLLKDCNITDIDP--------------------DAFSGLGILIELD 121
AD L NL L L + ITDIDP A SGL L +L
Sbjct: 98 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 157
Query: 122 LTKNRIHTLHPDA 134
+ N++ L P A
Sbjct: 158 FSSNQVTDLKPLA 170
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 28.1 bits (61), Expect = 1.9, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 20/73 (27%)
Query: 82 ADAFRSTGLVNLHNLLLKDCNITDIDP--------------------DAFSGLGILIELD 121
AD L NL L L + ITDIDP A SGL L +L
Sbjct: 98 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 157
Query: 122 LTKNRIHTLHPDA 134
+ N++ L P A
Sbjct: 158 FSSNQVTDLKPLA 170
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 80 FPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
F D F T L NL L L C + + P AF+ L L L+++ N +L
Sbjct: 166 FLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 21/113 (18%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
C C C T R CN+ GL+++P G+ L+L + N + P F L
Sbjct: 1 CPSRCSCSGTEIR----CNSKGLTSVPTGIPSSATRLEL-ESNKLQSLPHGVFD--KLTQ 53
Query: 93 LHNLLLKD--------CNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGL 137
L L L C+ +D G L LDL+ N + T+ + GL
Sbjct: 54 LTKLSLSSNGLSFKGCCSQSDF------GTTSLKYLDLSFNGVITMSSNFLGL 100
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 27.7 bits (60), Expect = 2.4, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 80 FPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
F D F T L NL L L C + + P AF+ L L L+++ N +L
Sbjct: 485 FLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 533
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 27.7 bits (60), Expect = 2.4, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 80 FPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
F D F T L NL L L C + + P AF+ L L L+++ N +L
Sbjct: 461 FLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 7/101 (6%)
Query: 30 TGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTG 89
+ C C C T C + +++P G+ + Q L L N I F S
Sbjct: 10 SAACPSQCSCSGTT----VDCRSKRHASVPAGIPTNAQILYLHD-NQITKLEPGVFDS-- 62
Query: 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L+NL L L + + F L L LDL N++ L
Sbjct: 63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 9/117 (7%)
Query: 26 EEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDL----GKCNVIFCFP 81
W+ C+ + N + N IP L+ ++ YL+ G N++ P
Sbjct: 36 RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIP 94
Query: 82 ADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH-TLHPDACGL 137
+ L LH L + N++ PD S + L+ LD + N + TL P L
Sbjct: 95 PAIAK---LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 51 NNTGLSAIPR----GLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
+N + I R GLS + L L K N I AF T L L+ L + N+ ++
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLDELN--LSDNNNLEEL 193
Query: 107 DPDAFSGLGILIELDLTKNRIHTL 130
D F G + LD+++ RIH+L
Sbjct: 194 PNDVFHGASGPVILDISRTRIHSL 217
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 38 KCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLG 72
+C W++ + GL +P+GL ++ LDL
Sbjct: 246 RCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLS 280
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 26.6 bits (57), Expect = 5.9, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 82 ADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
AD L NL L L + ITDIDP L L L+L+ N I
Sbjct: 103 ADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 146
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 26.6 bits (57), Expect = 5.9, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 82 ADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
AD L NL L L + ITDIDP L L L+L+ N I
Sbjct: 102 ADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 145
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 26.6 bits (57), Expect = 5.9, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 82 ADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
AD L NL L L + ITDIDP L L L+L+ N I
Sbjct: 98 ADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 141
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 26.6 bits (57), Expect = 5.9, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 82 ADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
AD L NL L L + ITDIDP L L L+L+ N I
Sbjct: 98 ADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 141
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 32/98 (32%), Gaps = 31/98 (31%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
C C C T C+ L+++P G+ Q L
Sbjct: 11 CPSQCSCSGTT----VDCSGKSLASVPTGIPTTTQVL----------------------- 43
Query: 93 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L D IT ++P F L L LDL N++ L
Sbjct: 44 ----YLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 77
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 32/98 (32%), Gaps = 31/98 (31%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
C C C T C+ L+++P G+ Q L
Sbjct: 3 CPSQCSCSGTT----VDCSGKSLASVPTGIPTTTQVL----------------------- 35
Query: 93 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L D IT ++P F L L LDL N++ L
Sbjct: 36 ----YLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS-GLGILIELDLT 123
+++ L L +CN+ + F L +L L+L+D NI I P +F + LDLT
Sbjct: 104 NLEVLTLTQCNLDGAVLSGNFFKP-LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162
Query: 124 KNRIHTL 130
N++ ++
Sbjct: 163 FNKVKSI 169
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 96 LLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L L D IT ++P F L L LDL N++ L
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDL 71
D C W + + TGL +P+GL + LDL
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDL 281
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS-GLGILIELDLT 123
+++ L L +CN+ + F L +L L+L+D NI I P +F + LDLT
Sbjct: 104 NLEVLTLTQCNLDGAVLSGNFFKP-LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162
Query: 124 KNRIHTL 130
N++ ++
Sbjct: 163 FNKVKSI 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,542,190
Number of Sequences: 62578
Number of extensions: 174991
Number of successful extensions: 490
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 147
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)