Query psy17693
Match_columns 152
No_of_seqs 189 out of 2024
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 20:33:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17693.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17693hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4237|consensus 99.8 1.2E-22 2.5E-27 150.4 1.1 111 32-146 36-147 (498)
2 KOG4194|consensus 99.6 1.4E-14 3.1E-19 112.6 7.9 109 32-146 45-228 (873)
3 PF13855 LRR_8: Leucine rich r 99.4 5.3E-13 1.2E-17 75.9 4.4 60 65-127 2-61 (61)
4 PF13855 LRR_8: Leucine rich r 99.4 4E-13 8.6E-18 76.4 3.3 59 91-149 1-59 (61)
5 KOG4194|consensus 99.2 5.4E-12 1.2E-16 98.5 2.4 100 47-149 153-255 (873)
6 KOG4237|consensus 99.1 2.9E-12 6.3E-17 95.8 -2.5 102 45-149 69-174 (498)
7 PF14580 LRR_9: Leucine-rich r 99.0 3.1E-10 6.8E-15 77.5 3.5 98 46-149 22-123 (175)
8 PF14580 LRR_9: Leucine-rich r 99.0 6.4E-10 1.4E-14 76.0 4.3 96 47-146 46-147 (175)
9 PLN00113 leucine-rich repeat r 98.8 6.9E-09 1.5E-13 87.4 6.9 83 64-149 499-581 (968)
10 PLN00113 leucine-rich repeat r 98.8 1.8E-08 4E-13 84.9 7.1 59 89-147 162-220 (968)
11 KOG0444|consensus 98.8 1.3E-09 2.7E-14 86.5 0.1 87 58-149 95-183 (1255)
12 KOG0444|consensus 98.8 8E-10 1.7E-14 87.6 -1.3 101 46-150 106-208 (1255)
13 PLN03150 hypothetical protein; 98.7 4.8E-08 1E-12 79.0 6.5 82 64-148 442-524 (623)
14 PRK15370 E3 ubiquitin-protein 98.7 1.1E-07 2.4E-12 78.1 8.0 58 45-108 180-237 (754)
15 PRK15387 E3 ubiquitin-protein 98.6 9E-08 1.9E-12 78.6 7.2 64 36-107 195-258 (788)
16 KOG0472|consensus 98.6 1.7E-09 3.7E-14 81.6 -3.2 99 46-150 186-286 (565)
17 KOG0617|consensus 98.6 2.5E-09 5.4E-14 72.5 -3.1 35 114-149 126-160 (264)
18 KOG0617|consensus 98.5 8.2E-09 1.8E-13 70.0 -1.2 77 64-146 33-109 (264)
19 PLN03150 hypothetical protein; 98.5 2.5E-07 5.4E-12 74.9 6.6 82 65-149 419-500 (623)
20 PF12799 LRR_4: Leucine Rich r 98.5 1.2E-07 2.7E-12 50.0 2.9 41 91-132 1-41 (44)
21 PRK15370 E3 ubiquitin-protein 98.5 3.6E-07 7.8E-12 75.1 6.9 91 46-148 202-292 (754)
22 KOG0472|consensus 98.5 2.8E-08 6.1E-13 75.1 -0.2 99 47-150 439-539 (565)
23 PF01462 LRRNT: Leucine rich r 98.3 5.8E-07 1.3E-11 42.6 2.5 28 32-63 1-28 (28)
24 KOG1644|consensus 98.3 1.2E-06 2.6E-11 60.7 5.0 98 47-148 46-149 (233)
25 smart00013 LRRNT Leucine rich 98.3 1E-06 2.2E-11 43.5 3.1 32 32-67 1-32 (33)
26 PRK15387 E3 ubiquitin-protein 98.3 1.2E-06 2.7E-11 72.1 5.3 53 92-149 403-455 (788)
27 KOG1259|consensus 98.3 3.6E-07 7.8E-12 67.1 1.5 78 65-149 285-362 (490)
28 KOG1259|consensus 98.2 5E-07 1.1E-11 66.4 0.5 78 47-130 288-367 (490)
29 PF13306 LRR_5: Leucine rich r 98.0 1.5E-05 3.3E-10 51.3 5.5 95 47-149 16-113 (129)
30 KOG0618|consensus 98.0 6.5E-07 1.4E-11 73.7 -1.2 100 48-150 364-487 (1081)
31 KOG0532|consensus 98.0 6.7E-07 1.5E-11 70.3 -1.1 104 35-149 139-244 (722)
32 PF12799 LRR_4: Leucine Rich r 98.0 5.8E-06 1.3E-10 43.5 2.7 41 64-108 1-41 (44)
33 KOG1644|consensus 98.0 9E-06 2E-10 56.4 4.3 81 64-149 42-123 (233)
34 KOG4579|consensus 97.9 8.3E-07 1.8E-11 58.2 -2.3 85 47-136 57-144 (177)
35 KOG0618|consensus 97.9 1.5E-06 3.4E-11 71.5 -1.7 76 65-144 360-435 (1081)
36 KOG4579|consensus 97.9 7.4E-07 1.6E-11 58.4 -3.0 81 64-149 53-133 (177)
37 PF13306 LRR_5: Leucine rich r 97.8 5.7E-05 1.2E-09 48.6 5.0 70 65-141 59-128 (129)
38 PLN03210 Resistant to P. syrin 97.8 0.00019 4E-09 62.3 9.0 94 48-148 594-690 (1153)
39 COG4886 Leucine-rich repeat (L 97.7 1.7E-05 3.6E-10 60.8 1.6 97 47-149 120-219 (394)
40 PLN03210 Resistant to P. syrin 97.6 0.00026 5.6E-09 61.4 8.3 97 46-149 614-714 (1153)
41 KOG0531|consensus 97.6 3.6E-05 7.8E-10 59.6 2.0 76 64-147 95-170 (414)
42 KOG0531|consensus 97.5 3E-05 6.5E-10 60.0 0.8 96 47-149 99-196 (414)
43 KOG4658|consensus 97.5 9.7E-05 2.1E-09 62.1 3.4 98 48-150 528-629 (889)
44 KOG1859|consensus 97.5 3.6E-06 7.8E-11 68.2 -4.9 94 47-148 168-263 (1096)
45 COG4886 Leucine-rich repeat (L 97.2 0.00031 6.8E-09 53.8 3.3 56 90-148 231-286 (394)
46 PF00560 LRR_1: Leucine Rich R 97.2 9.1E-05 2E-09 32.9 0.2 20 117-137 2-21 (22)
47 smart00370 LRR Leucine-rich re 97.2 0.00033 7.2E-09 32.3 2.1 23 114-136 1-23 (26)
48 smart00369 LRR_TYP Leucine-ric 97.2 0.00033 7.2E-09 32.3 2.1 23 114-136 1-23 (26)
49 KOG2123|consensus 97.1 1E-05 2.2E-10 58.9 -5.1 96 45-145 21-123 (388)
50 cd00116 LRR_RI Leucine-rich re 97.1 0.00019 4.1E-09 53.1 1.2 15 114-128 192-206 (319)
51 cd00116 LRR_RI Leucine-rich re 97.1 0.00018 3.8E-09 53.2 0.8 81 66-149 110-203 (319)
52 KOG0532|consensus 97.1 0.00011 2.5E-09 58.2 -0.5 108 35-150 114-222 (722)
53 KOG3207|consensus 97.0 0.00027 5.8E-09 54.4 1.0 88 56-145 238-332 (505)
54 KOG1859|consensus 96.9 7E-05 1.5E-09 61.0 -2.9 79 64-149 164-242 (1096)
55 KOG4658|consensus 96.7 0.0012 2.6E-08 55.8 2.7 82 64-149 571-652 (889)
56 KOG2123|consensus 96.7 3.5E-05 7.6E-10 56.2 -5.6 79 64-149 19-98 (388)
57 PF00560 LRR_1: Leucine Rich R 96.5 0.0016 3.4E-08 28.8 1.4 19 93-112 2-20 (22)
58 PF13504 LRR_7: Leucine rich r 96.5 0.0017 3.6E-08 26.9 1.2 16 116-131 2-17 (17)
59 PRK15386 type III secretion pr 96.4 0.014 3E-07 45.3 6.7 55 46-106 55-110 (426)
60 smart00369 LRR_TYP Leucine-ric 96.4 0.0024 5.2E-08 29.3 1.5 23 90-112 1-23 (26)
61 smart00370 LRR Leucine-rich re 96.4 0.0024 5.2E-08 29.3 1.5 23 90-112 1-23 (26)
62 KOG2739|consensus 96.1 0.0038 8.3E-08 45.0 2.1 79 64-146 65-150 (260)
63 KOG2739|consensus 96.0 0.0039 8.6E-08 44.9 1.9 81 64-150 43-127 (260)
64 KOG3207|consensus 95.4 0.0027 5.9E-08 49.1 -0.9 60 90-149 221-281 (505)
65 PRK15386 type III secretion pr 94.6 0.11 2.4E-06 40.4 5.7 89 47-148 76-186 (426)
66 KOG1909|consensus 94.5 0.024 5.2E-07 42.8 1.9 57 91-147 185-249 (382)
67 KOG2982|consensus 94.3 0.01 2.2E-07 44.2 -0.4 84 64-150 71-157 (418)
68 smart00365 LRR_SD22 Leucine-ri 94.2 0.044 9.6E-07 25.2 1.8 18 114-131 1-18 (26)
69 KOG1909|consensus 94.1 0.05 1.1E-06 41.1 2.9 99 46-147 160-278 (382)
70 KOG3665|consensus 93.9 0.035 7.5E-07 46.0 1.8 32 89-122 171-202 (699)
71 KOG3665|consensus 93.5 0.016 3.5E-07 47.9 -0.6 64 64-130 122-188 (699)
72 smart00364 LRR_BAC Leucine-ric 92.8 0.08 1.7E-06 24.3 1.4 18 115-132 2-19 (26)
73 KOG3864|consensus 90.8 0.037 8E-07 38.8 -1.4 78 64-148 101-185 (221)
74 KOG2982|consensus 87.5 0.52 1.1E-05 35.4 2.5 63 64-129 97-160 (418)
75 TIGR00864 PCC polycystin catio 87.4 0.33 7.2E-06 45.7 1.7 32 70-104 1-32 (2740)
76 KOG0473|consensus 87.3 0.0078 1.7E-07 43.3 -6.7 80 64-149 42-121 (326)
77 PF13516 LRR_6: Leucine Rich r 87.3 0.1 2.2E-06 23.2 -0.8 14 115-128 2-15 (24)
78 smart00368 LRR_RI Leucine rich 85.3 0.85 1.8E-05 21.1 1.8 15 115-129 2-16 (28)
79 KOG0473|consensus 81.5 0.018 4E-07 41.4 -6.9 68 77-148 30-97 (326)
80 KOG3763|consensus 78.1 1.1 2.3E-05 36.2 1.0 65 64-129 218-284 (585)
81 PF05725 FNIP: FNIP Repeat; I 75.9 6.9 0.00015 20.1 3.5 35 60-99 8-42 (44)
82 COG5238 RNA1 Ran GTPase-activa 71.1 2.6 5.7E-05 31.4 1.5 12 65-77 31-42 (388)
83 KOG2120|consensus 70.7 0.12 2.6E-06 38.6 -5.4 58 90-147 209-268 (419)
84 TIGR00864 PCC polycystin catio 64.0 3.8 8.3E-05 39.2 1.4 32 97-128 1-32 (2740)
85 KOG3763|consensus 61.5 4.4 9.5E-05 32.9 1.2 58 89-149 216-280 (585)
86 COG5238 RNA1 Ran GTPase-activa 55.7 3.4 7.4E-05 30.9 -0.3 59 47-106 161-229 (388)
87 KOG2120|consensus 50.1 1.6 3.4E-05 33.0 -2.7 60 92-151 186-246 (419)
88 PF05624 LSR: Lipolysis stimul 35.1 30 0.00065 18.1 1.4 9 32-40 26-34 (49)
89 PF06364 DUF1068: Protein of u 28.4 42 0.00092 22.9 1.6 21 31-61 42-62 (176)
90 TIGR02167 Liste_lipo_26 bacter 27.7 26 0.00057 15.8 0.4 12 136-147 3-14 (26)
91 PF07473 Toxin_11: Spasmodic p 27.4 35 0.00076 15.7 0.8 11 32-42 11-21 (28)
92 PF01456 Mucin: Mucin-like gly 26.2 74 0.0016 20.7 2.5 8 32-39 17-24 (143)
93 smart00367 LRR_CC Leucine-rich 26.0 58 0.0012 14.2 1.4 12 115-126 2-13 (26)
94 KOG1947|consensus 23.3 45 0.00097 25.9 1.2 59 90-148 242-304 (482)
No 1
>KOG4237|consensus
Probab=99.85 E-value=1.2e-22 Score=150.38 Aligned_cols=111 Identities=32% Similarity=0.500 Sum_probs=101.7
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f 111 (152)
.||.+|.|+..+ -..|+|++.++++||..+|.+++.|++.. |.|+.||+++|. .+.+|++|++++|.|+.|.|.+|
T Consensus 36 ~CP~pC~Cs~~~-g~~VdCr~~GL~eVP~~LP~~tveirLdq-N~I~~iP~~aF~--~l~~LRrLdLS~N~Is~I~p~AF 111 (498)
T KOG4237|consen 36 ACPAPCTCSDVE-GGIVDCRGKGLTEVPANLPPETVEIRLDQ-NQISSIPPGAFK--TLHRLRRLDLSKNNISFIAPDAF 111 (498)
T ss_pred cCCCCcccCCCC-CceEEccCCCcccCcccCCCcceEEEecc-CCcccCChhhcc--chhhhceecccccchhhcChHhh
Confidence 799999999654 35899999999999999999999999999 999999999999 89999999999999999999999
Q ss_pred cCCCcCcEEeCCC-CCCCccCcchhccCccCcEEEe
Q psy17693 112 SGLGILIELDLTK-NRIHTLHPDACGLCRSMLFFYF 146 (152)
Q Consensus 112 ~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L 146 (152)
.+++++..|-+-+ |+|+.++.++|.++.+|+.|.+
T Consensus 112 ~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 112 KGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred hhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 9999988776555 9999999999999988876644
No 2
>KOG4194|consensus
Probab=99.55 E-value=1.4e-14 Score=112.59 Aligned_cols=109 Identities=29% Similarity=0.451 Sum_probs=73.1
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCC-----CCCCCCCcEEEEecCC--------------------------------
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAI-----PRGLSKDVQYLDLGKC-------------------------------- 74 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~i-----P~~~~~~l~~L~l~~~-------------------------------- 74 (152)
.||..|.|.. ..++|+++.+.++ +..+|..++.|++++|
T Consensus 45 ~cpa~c~c~~----~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f 120 (873)
T KOG4194|consen 45 ECPATCPCNT----RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF 120 (873)
T ss_pred cCCCcCCCCc----eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc
Confidence 7999999984 3789998887765 5555655555555553
Q ss_pred --------------------------------------CcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCc
Q psy17693 75 --------------------------------------NVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI 116 (152)
Q Consensus 75 --------------------------------------n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~ 116 (152)
|.|..|+...|. .-.++++|++++|.|+.++.+.|.++.+
T Consensus 121 ~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp--~~~ni~~L~La~N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 121 GHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFP--AKVNIKKLNLASNRITTLETGHFDSLNS 198 (873)
T ss_pred cccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCC--CCCCceEEeeccccccccccccccccch
Confidence 455555555554 3345666666666666666666766666
Q ss_pred CcEEeCCCCCCCccCcchhccCccCcEEEe
Q psy17693 117 LIELDLTKNRIHTLHPDACGLCRSMLFFYF 146 (152)
Q Consensus 117 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 146 (152)
|..|.|++|+|+.+|...|..++.|+.|+|
T Consensus 199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred heeeecccCcccccCHHHhhhcchhhhhhc
Confidence 766777777777777777776666666665
No 3
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.39 E-value=5.3e-13 Score=75.90 Aligned_cols=60 Identities=43% Similarity=0.624 Sum_probs=36.2
Q ss_pred CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCC
Q psy17693 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127 (152)
Q Consensus 65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l 127 (152)
++++|++++ |.++.+++..|. ++++|+.|++++|.++.+++++|.++++|+++++++|+|
T Consensus 2 ~L~~L~l~~-n~l~~i~~~~f~--~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSN-NKLTEIPPDSFS--NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETS-STESEECTTTTT--TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCC-CCCCccCHHHHc--CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 345566666 666666666665 556666666666666666666666666666666666543
No 4
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.38 E-value=4e-13 Score=76.43 Aligned_cols=59 Identities=32% Similarity=0.514 Sum_probs=56.6
Q ss_pred CcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 91 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 91 ~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
++|+.|++++|+++.+++.+|.++++|+.|++++|+++.+++++|.++++|++|+++++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 47899999999999999999999999999999999999999999999999999999875
No 5
>KOG4194|consensus
Probab=99.21 E-value=5.4e-12 Score=98.51 Aligned_cols=100 Identities=24% Similarity=0.304 Sum_probs=78.3
Q ss_pred eEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693 47 GAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123 (152)
Q Consensus 47 ~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~ 123 (152)
.+|.+.+.+.++|. .+| .++++|++++ |.|+.+..+.|. ++.+|..|.++.|+++.+++.+|..+++|+.|+|.
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~--~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFD--SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeecc-cccccccccccc--ccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence 45666666777765 334 5788889999 888888888888 78888888888888888888888888888888888
Q ss_pred CCCCCccCcchhccCccCcEEEeecC
Q psy17693 124 KNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 124 ~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+|+|+.+.--+|+++++|+.|.|.-+
T Consensus 230 rN~irive~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 230 RNRIRIVEGLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred ccceeeehhhhhcCchhhhhhhhhhc
Confidence 88888776667777777777766533
No 6
>KOG4237|consensus
Probab=99.12 E-value=2.9e-12 Score=95.76 Aligned_cols=102 Identities=32% Similarity=0.438 Sum_probs=91.1
Q ss_pred cceEEecCCCCCCCCCCCC---CCcEEEEecCCCcccccCCCcccccCCCcccEEEccC-CcCeecCcccccCCCcCcEE
Q psy17693 45 RKGAACNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKD-CNITDIDPDAFSGLGILIEL 120 (152)
Q Consensus 45 ~~~~~c~~~~l~~iP~~~~---~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~-n~l~~i~~~~f~~l~~L~~L 120 (152)
+..+..+.++|+.||++.. ..++.||++. |.|+.|.+++|. |+.++..|.+-+ |+|+.++.++|.++.+++.|
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~--GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFK--GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccc-cchhhcChHhhh--hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 3467888999999998765 6889999999 999999999999 898887776655 89999999999999999999
Q ss_pred eCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 121 DLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 121 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
.+.-|++..+..++|+.+++|..|.+-++
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn 174 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDN 174 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccch
Confidence 99999999999999999999988887665
No 7
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=3.1e-10 Score=77.50 Aligned_cols=98 Identities=23% Similarity=0.298 Sum_probs=41.2
Q ss_pred ceEEecCCCCCCCCCCCC---CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693 46 KGAACNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL 122 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~---~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L 122 (152)
+.++.+++.++.|. .+. ..++.|++++ |.|+.++. +. .++.|+.|++++|.|+.+.+.....+++|+.|++
T Consensus 22 ~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~-N~I~~l~~--l~--~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 22 RELNLRGNQISTIE-NLGATLDKLEVLDLSN-NQITKLEG--LP--GLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ---------------S--TT-TT--EEE-TT-S--S--TT--------TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccc-chhhhhcCCCEEECCC-CCCccccC--cc--ChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 35777778877765 343 5789999999 99999874 55 6899999999999999997643346899999999
Q ss_pred CCCCCCccCc-chhccCccCcEEEeecC
Q psy17693 123 TKNRIHTLHP-DACGLCRSMLFFYFRES 149 (152)
Q Consensus 123 ~~N~l~~l~~-~~~~~l~~L~~L~L~~~ 149 (152)
++|+|..+.. ..+..+++|+.|++.++
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 9999988764 56788999999998764
No 8
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=6.4e-10 Score=75.97 Aligned_cols=96 Identities=23% Similarity=0.237 Sum_probs=36.7
Q ss_pred eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCc-ccccCCCcCcEEeCC
Q psy17693 47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLT 123 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~L~ 123 (152)
.++.++++++.++ +++ ..++.|++++ |.|+.+.+.... .+++|+.|++++|+|..+.. ..+..+++|+.|++.
T Consensus 46 ~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~--~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~ 121 (175)
T PF14580_consen 46 VLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDK--NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLE 121 (175)
T ss_dssp EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHH--H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-T
T ss_pred EEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHH--hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeecc
Confidence 5566666666665 333 5666666666 666666442222 35666666666666655443 334456666666666
Q ss_pred CCCCCccCc---chhccCccCcEEEe
Q psy17693 124 KNRIHTLHP---DACGLCRSMLFFYF 146 (152)
Q Consensus 124 ~N~l~~l~~---~~~~~l~~L~~L~L 146 (152)
+|+++..+. ..+..+++|+.||-
T Consensus 122 ~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 122 GNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp T-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCcccchhhHHHHHHHHcChhheeCC
Confidence 666665432 23455666666654
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.84 E-value=6.9e-09 Score=87.44 Aligned_cols=83 Identities=22% Similarity=0.296 Sum_probs=48.9
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF 143 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 143 (152)
..++.|++++ |.+....+..+. .+++|+.|++++|.++...+..|.++++|+.|+|++|+++...|..+.++.+|+.
T Consensus 499 ~~L~~L~Ls~-N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 499 SELMQLKLSE-NKLSGEIPDELS--SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575 (968)
T ss_pred hccCEEECcC-CcceeeCChHHc--CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence 3455556666 655554444555 5556666666666666555556666666666666666666544555566666666
Q ss_pred EEeecC
Q psy17693 144 FYFRES 149 (152)
Q Consensus 144 L~L~~~ 149 (152)
++++++
T Consensus 576 l~ls~N 581 (968)
T PLN00113 576 VNISHN 581 (968)
T ss_pred EeccCC
Confidence 666543
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.77 E-value=1.8e-08 Score=84.90 Aligned_cols=59 Identities=22% Similarity=0.300 Sum_probs=27.1
Q ss_pred CCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEee
Q psy17693 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFR 147 (152)
Q Consensus 89 ~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 147 (152)
.+++|+.|++++|.+....|..|..+++|++|++++|++....+..+.++++|++|+++
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 34445555555544444334444444444444444444444333344444444444443
No 11
>KOG0444|consensus
Probab=98.77 E-value=1.3e-09 Score=86.52 Aligned_cols=87 Identities=29% Similarity=0.322 Sum_probs=48.4
Q ss_pred CCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchh
Q psy17693 58 IPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDAC 135 (152)
Q Consensus 58 iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~ 135 (152)
||+.+. ..++.||+++ |.++.+|.+- . ...++..|++++|.|.+|+...|-++.-|-+|||++|++..+||.+
T Consensus 95 iP~diF~l~dLt~lDLSh-NqL~EvP~~L-E--~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~- 169 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSH-NQLREVPTNL-E--YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQI- 169 (1255)
T ss_pred CCchhcccccceeeecch-hhhhhcchhh-h--hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHH-
Confidence 444443 4556666666 6666555542 2 2345556666666666666555666666666666666666666553
Q ss_pred ccCccCcEEEeecC
Q psy17693 136 GLCRSMLFFYFRES 149 (152)
Q Consensus 136 ~~l~~L~~L~L~~~ 149 (152)
+.+..|+.|.|+++
T Consensus 170 RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNN 183 (1255)
T ss_pred HHHhhhhhhhcCCC
Confidence 44555555555543
No 12
>KOG0444|consensus
Probab=98.76 E-value=8e-10 Score=87.60 Aligned_cols=101 Identities=21% Similarity=0.278 Sum_probs=86.2
Q ss_pred ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693 46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~ 123 (152)
..++.+.+.++++|.++- .+.-+|++++ |+|.+||...|- +++-|-.|++++|++..++|+ .+.+..|+.|+|+
T Consensus 106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfi--nLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 106 TILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFI--NLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLS 181 (1255)
T ss_pred eeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHH--hhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcC
Confidence 478999999999998764 7888999999 999999999998 889999999999999999987 5789999999999
Q ss_pred CCCCCccCcchhccCccCcEEEeecCC
Q psy17693 124 KNRIHTLHPDACGLCRSMLFFYFREST 150 (152)
Q Consensus 124 ~N~l~~l~~~~~~~l~~L~~L~L~~~~ 150 (152)
+|++....-..+..+.+|..|.+++|.
T Consensus 182 ~NPL~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 182 NNPLNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred CChhhHHHHhcCccchhhhhhhccccc
Confidence 999876655555566677777777653
No 13
>PLN03150 hypothetical protein; Provisional
Probab=98.68 E-value=4.8e-08 Score=78.99 Aligned_cols=82 Identities=22% Similarity=0.216 Sum_probs=45.3
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccC-ccCc
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLC-RSML 142 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l-~~L~ 142 (152)
..++.|++++ |.+....+..+. .+++|+.|++++|.++...|..+..+++|+.|+|++|+++..-|..+.+. .++.
T Consensus 442 ~~L~~L~Ls~-N~l~g~iP~~~~--~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~ 518 (623)
T PLN03150 442 RHLQSINLSG-NSIRGNIPPSLG--SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518 (623)
T ss_pred CCCCEEECCC-CcccCcCChHHh--CCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence 4566666666 666544444454 55666666666666665555556666666666666666664434333332 2344
Q ss_pred EEEeec
Q psy17693 143 FFYFRE 148 (152)
Q Consensus 143 ~L~L~~ 148 (152)
.+++.+
T Consensus 519 ~l~~~~ 524 (623)
T PLN03150 519 SFNFTD 524 (623)
T ss_pred eEEecC
Confidence 454443
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.65 E-value=1.1e-07 Score=78.12 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=44.0
Q ss_pred cceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCc
Q psy17693 45 RKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108 (152)
Q Consensus 45 ~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~ 108 (152)
...+++++.+++.+|..+|+.++.|++++ |.++.++...+ .+|+.|++++|.++.++.
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~-N~LtsLP~~l~-----~nL~~L~Ls~N~LtsLP~ 237 (754)
T PRK15370 180 KTELRLKILGLTTIPACIPEQITTLILDN-NELKSLPENLQ-----GNIKTLYANSNQLTSIPA 237 (754)
T ss_pred ceEEEeCCCCcCcCCcccccCCcEEEecC-CCCCcCChhhc-----cCCCEEECCCCccccCCh
Confidence 35788888889999988888899999999 88888876533 356777777776666543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.64 E-value=9e-08 Score=78.63 Aligned_cols=64 Identities=20% Similarity=0.326 Sum_probs=49.7
Q ss_pred CceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecC
Q psy17693 36 LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107 (152)
Q Consensus 36 ~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~ 107 (152)
.+.|... +...++|++.+++.+|+.++..++.|.+.+ |.++.+|.. .++|+.|++++|+++.++
T Consensus 195 ~~~Cl~~-~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~-N~Lt~LP~l------p~~Lk~LdLs~N~LtsLP 258 (788)
T PRK15387 195 MRACLNN-GNAVLNVGESGLTTLPDCLPAHITTLVIPD-NNLTSLPAL------PPELRTLEVSGNQLTSLP 258 (788)
T ss_pred HHHHhcC-CCcEEEcCCCCCCcCCcchhcCCCEEEccC-CcCCCCCCC------CCCCcEEEecCCccCccc
Confidence 3455432 245899999999999998888889999999 888887742 467888888888887775
No 16
>KOG0472|consensus
Probab=98.61 E-value=1.7e-09 Score=81.55 Aligned_cols=99 Identities=25% Similarity=0.393 Sum_probs=71.9
Q ss_pred ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693 46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~ 123 (152)
+.++|..+-+..+|+.+. ..+.-|++.. |+|..+| .|. ++..|..+++..|.|+.++.....+++++..|||.
T Consensus 186 ~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lP--ef~--gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 186 KHLDCNSNLLETLPPELGGLESLELLYLRR-NKIRFLP--EFP--GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred HhcccchhhhhcCChhhcchhhhHHHHhhh-cccccCC--CCC--ccHHHHHHHhcccHHHhhHHHHhcccccceeeecc
Confidence 367888788888887765 5667777888 8887777 466 66777777777777777776666677777777777
Q ss_pred CCCCCccCcchhccCccCcEEEeecCC
Q psy17693 124 KNRIHTLHPDACGLCRSMLFFYFREST 150 (152)
Q Consensus 124 ~N~l~~l~~~~~~~l~~L~~L~L~~~~ 150 (152)
+|+++++|.++ .-+++|..||++|+.
T Consensus 261 dNklke~Pde~-clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 261 DNKLKEVPDEI-CLLRSLERLDLSNND 286 (565)
T ss_pred ccccccCchHH-HHhhhhhhhcccCCc
Confidence 77777776554 446777777777653
No 17
>KOG0617|consensus
Probab=98.57 E-value=2.5e-09 Score=72.50 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=15.6
Q ss_pred CCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 114 LGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 114 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+..|+.|+|++|.+.-+|++. +.+.+|+.|.++++
T Consensus 126 m~tlralyl~dndfe~lp~dv-g~lt~lqil~lrdn 160 (264)
T KOG0617|consen 126 MTTLRALYLGDNDFEILPPDV-GKLTNLQILSLRDN 160 (264)
T ss_pred HHHHHHHHhcCCCcccCChhh-hhhcceeEEeeccC
Confidence 333334444444444444442 44555555555443
No 18
>KOG0617|consensus
Probab=98.54 E-value=8.2e-09 Score=70.01 Aligned_cols=77 Identities=23% Similarity=0.319 Sum_probs=36.6
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF 143 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 143 (152)
..++.|.+++ |+++.++++--. +.+|+.|++.+|+|+.++.. .+.+++|+.|+++-|++..+|.+ |+.++.|..
T Consensus 33 s~ITrLtLSH-NKl~~vppnia~---l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprg-fgs~p~lev 106 (264)
T KOG0617|consen 33 SNITRLTLSH-NKLTVVPPNIAE---LKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRG-FGSFPALEV 106 (264)
T ss_pred hhhhhhhccc-CceeecCCcHHH---hhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccc-cCCCchhhh
Confidence 3444555555 555555544322 44555555555555554332 34455555555555554444333 444444444
Q ss_pred EEe
Q psy17693 144 FYF 146 (152)
Q Consensus 144 L~L 146 (152)
|+|
T Consensus 107 ldl 109 (264)
T KOG0617|consen 107 LDL 109 (264)
T ss_pred hhc
Confidence 444
No 19
>PLN03150 hypothetical protein; Provisional
Probab=98.52 E-value=2.5e-07 Score=74.89 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=73.5
Q ss_pred CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEE
Q psy17693 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFF 144 (152)
Q Consensus 65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 144 (152)
.++.|++++ |.+....+..+. .+++|+.|++++|.+....|..|..+++|+.|+|++|+++...|..+.++++|+.|
T Consensus 419 ~v~~L~L~~-n~L~g~ip~~i~--~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDN-QGLRGFIPNDIS--KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCC-CCccccCCHHHh--CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 478899999 999877777787 78999999999999987667779999999999999999998778889999999999
Q ss_pred EeecC
Q psy17693 145 YFRES 149 (152)
Q Consensus 145 ~L~~~ 149 (152)
+|+++
T Consensus 496 ~Ls~N 500 (623)
T PLN03150 496 NLNGN 500 (623)
T ss_pred ECcCC
Confidence 99875
No 20
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.50 E-value=1.2e-07 Score=50.02 Aligned_cols=41 Identities=39% Similarity=0.556 Sum_probs=31.4
Q ss_pred CcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCc
Q psy17693 91 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132 (152)
Q Consensus 91 ~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~ 132 (152)
++|+.|++++|+|+.+++ .+..+++|+.|++++|+++.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCCcC
Confidence 368888899998888866 47888999999999998887643
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.49 E-value=3.6e-07 Score=75.13 Aligned_cols=91 Identities=20% Similarity=0.267 Sum_probs=56.3
Q ss_pred ceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCC
Q psy17693 46 KGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N 125 (152)
..++.+++.++.+|..++.+++.|++++ |.++.++...+ .+|+.|++++|.+..++...+ .+|+.|++++|
T Consensus 202 ~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~-N~LtsLP~~l~-----~~L~~L~Ls~N~L~~LP~~l~---s~L~~L~Ls~N 272 (754)
T PRK15370 202 TTLILDNNELKSLPENLQGNIKTLYANS-NQLTSIPATLP-----DTIQEMELSINRITELPERLP---SALQSLDLFHN 272 (754)
T ss_pred cEEEecCCCCCcCChhhccCCCEEECCC-CccccCChhhh-----ccccEEECcCCccCcCChhHh---CCCCEEECcCC
Confidence 4677777778888877777777888887 77777665321 246666666666666644321 35666666666
Q ss_pred CCCccCcchhccCccCcEEEeec
Q psy17693 126 RIHTLHPDACGLCRSMLFFYFRE 148 (152)
Q Consensus 126 ~l~~l~~~~~~~l~~L~~L~L~~ 148 (152)
+|+.+|...+ .+|+.|++++
T Consensus 273 ~L~~LP~~l~---~sL~~L~Ls~ 292 (754)
T PRK15370 273 KISCLPENLP---EELRYLSVYD 292 (754)
T ss_pred ccCccccccC---CCCcEEECCC
Confidence 6666554332 2455555554
No 22
>KOG0472|consensus
Probab=98.46 E-value=2.8e-08 Score=75.12 Aligned_cols=99 Identities=22% Similarity=0.332 Sum_probs=78.2
Q ss_pred eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693 47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~ 124 (152)
.++.+++-+.++|..+. ..++.++++. |+++.+|..... +..++.+..++|++..+++....++.+|..|||.+
T Consensus 439 ~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~-NrFr~lP~~~y~---lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 439 FLDLSNNLLNDLPEEMGSLVRLQTLNLSF-NRFRMLPECLYE---LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred eeecccchhhhcchhhhhhhhhheecccc-cccccchHHHhh---HHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence 45556666777777554 4578888888 888887776544 45566666677889999888788999999999999
Q ss_pred CCCCccCcchhccCccCcEEEeecCC
Q psy17693 125 NRIHTLHPDACGLCRSMLFFYFREST 150 (152)
Q Consensus 125 N~l~~l~~~~~~~l~~L~~L~L~~~~ 150 (152)
|.+..+||. ++++.+|++|.++++.
T Consensus 515 Ndlq~IPp~-LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 515 NDLQQIPPI-LGNMTNLRHLELDGNP 539 (565)
T ss_pred CchhhCChh-hccccceeEEEecCCc
Confidence 999999887 6999999999998763
No 23
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....
Probab=98.32 E-value=5.8e-07 Score=42.64 Aligned_cols=28 Identities=32% Similarity=0.796 Sum_probs=22.1
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCC
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLS 63 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~ 63 (152)
.||..|.|.. ..|+|++.+|+++|..+|
T Consensus 1 ~CP~~C~C~~----~~V~C~~~~L~~vP~~lP 28 (28)
T PF01462_consen 1 ACPRPCTCSG----LTVDCSGRGLTAVPSDLP 28 (28)
T ss_dssp SSETTSEEET----TEEEETTSS-SSS-STS-
T ss_pred CcCCCCEecC----CEeECCCCCCCccCCCCc
Confidence 4999999993 489999999999998775
No 24
>KOG1644|consensus
Probab=98.32 E-value=1.2e-06 Score=60.69 Aligned_cols=98 Identities=20% Similarity=0.176 Sum_probs=61.8
Q ss_pred eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCc-ccccCCCcCcEEeCC
Q psy17693 47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLT 123 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~L~ 123 (152)
.++.+++.+..++ .+| +.+.+|.+.+ |.|+.|.+.--. -+++|..|.+.+|.|..+.. .-...+++|++|.+-
T Consensus 46 ~iDLtdNdl~~l~-~lp~l~rL~tLll~n-NrIt~I~p~L~~--~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 46 AIDLTDNDLRKLD-NLPHLPRLHTLLLNN-NRITRIDPDLDT--FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred eecccccchhhcc-cCCCccccceEEecC-Ccceeeccchhh--hccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 4555566555544 233 6677777777 777777776444 45667777777777665443 224456777777777
Q ss_pred CCCCCccC---cchhccCccCcEEEeec
Q psy17693 124 KNRIHTLH---PDACGLCRSMLFFYFRE 148 (152)
Q Consensus 124 ~N~l~~l~---~~~~~~l~~L~~L~L~~ 148 (152)
+|+++... .+....+++|+.||++.
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 77766543 34566777777777654
No 25
>smart00013 LRRNT Leucine rich repeat N-terminal domain.
Probab=98.29 E-value=1e-06 Score=43.52 Aligned_cols=32 Identities=28% Similarity=0.726 Sum_probs=27.4
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcE
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQ 67 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~ 67 (152)
.||..|.|.. ..|+|++.+|+++|.++|.+++
T Consensus 1 ~CP~~C~C~~----~~V~C~~~~L~~vP~~iP~~t~ 32 (33)
T smart00013 1 ACPAPCNCSG----TAVDCSGRGLTEVPLDLPPDTT 32 (33)
T ss_pred CcCCCCEECC----CEeEeCCCCcCccCCCCCcccc
Confidence 4999999982 4899999999999999986653
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.28 E-value=1.2e-06 Score=72.08 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=33.4
Q ss_pred cccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 92 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+|+.|++++|.++.++.. ..+|+.|++++|+|+.+|.. +.++++|+.|+|+++
T Consensus 403 ~L~~LdLS~N~LssIP~l----~~~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N 455 (788)
T PRK15387 403 ELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGN 455 (788)
T ss_pred CCCEEEccCCcCCCCCcc----hhhhhhhhhccCcccccChH-HhhccCCCeEECCCC
Confidence 455555555555554321 23566677777777777544 677888888888765
No 27
>KOG1259|consensus
Probab=98.25 E-value=3.6e-07 Score=67.13 Aligned_cols=78 Identities=19% Similarity=0.150 Sum_probs=57.4
Q ss_pred CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEE
Q psy17693 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFF 144 (152)
Q Consensus 65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 144 (152)
.++.+|+++ |.|+.++...- -.+.++.|++++|.|..+.. ...+++|+.|||++|.++.+.- +-..+.+.+.|
T Consensus 285 ~LtelDLS~-N~I~~iDESvK---L~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL 357 (490)
T KOG1259|consen 285 ELTELDLSG-NLITQIDESVK---LAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTL 357 (490)
T ss_pred hhhhccccc-cchhhhhhhhh---hccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhh-hHhhhcCEeee
Confidence 367788999 88888877543 36788899999999888876 5568888899999988887643 33445566666
Q ss_pred EeecC
Q psy17693 145 YFRES 149 (152)
Q Consensus 145 ~L~~~ 149 (152)
.|+.+
T Consensus 358 ~La~N 362 (490)
T KOG1259|consen 358 KLAQN 362 (490)
T ss_pred ehhhh
Confidence 66543
No 28
>KOG1259|consensus
Probab=98.16 E-value=5e-07 Score=66.38 Aligned_cols=78 Identities=23% Similarity=0.198 Sum_probs=53.2
Q ss_pred eEEecCCCCCCCCCCC--CCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693 47 GAACNNTGLSAIPRGL--SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~--~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~ 124 (152)
.++.+.+.++.+-+.+ .+.++.|++++ |.|..+..-+ .+.+|+.||+++|.++.+.. +-..+.+++.|.|++
T Consensus 288 elDLS~N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~nLa----~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 288 ELDLSGNLITQIDESVKLAPKLRRLILSQ-NRIRTVQNLA----ELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQ 361 (490)
T ss_pred hccccccchhhhhhhhhhccceeEEeccc-cceeeehhhh----hcccceEeecccchhHhhhh-hHhhhcCEeeeehhh
Confidence 5777788887777644 37889999999 9999888744 46889999999988776643 222344444444444
Q ss_pred CCCCcc
Q psy17693 125 NRIHTL 130 (152)
Q Consensus 125 N~l~~l 130 (152)
|.|..+
T Consensus 362 N~iE~L 367 (490)
T KOG1259|consen 362 NKIETL 367 (490)
T ss_pred hhHhhh
Confidence 444443
No 29
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.03 E-value=1.5e-05 Score=51.30 Aligned_cols=95 Identities=16% Similarity=0.287 Sum_probs=60.6
Q ss_pred eEEecCCCCCCCCCCCC---CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693 47 GAACNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~~---~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~ 123 (152)
.+... ..++.+++..- ..++.+.+.. + +..++..+|. +...++.+.+.+ .+..++..+|...++++.+++.
T Consensus 16 ~i~~~-~~~~~I~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~--~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 16 SITFP-NTIKKIGENAFSNCTSLKSINFPN-N-LTSIGDNAFS--NCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp EEEET-ST--EE-TTTTTT-TT-SEEEESS-T-TSCE-TTTTT--T-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred EEEEC-CCeeEeChhhcccccccccccccc-c-ccccceeeee--cccccccccccc-cccccccccccccccccccccC
Confidence 44444 25666665432 4678888876 6 8888888888 777889998876 7778888889888999999987
Q ss_pred CCCCCccCcchhccCccCcEEEeecC
Q psy17693 124 KNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 124 ~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
.+ ++.++...|.+. .|+.+.+.+.
T Consensus 90 ~~-~~~i~~~~f~~~-~l~~i~~~~~ 113 (129)
T PF13306_consen 90 SN-ITEIGSSSFSNC-NLKEINIPSN 113 (129)
T ss_dssp TT--BEEHTTTTTT--T--EEE-TTB
T ss_pred cc-ccEEchhhhcCC-CceEEEECCC
Confidence 76 888888888887 7888887643
No 30
>KOG0618|consensus
Probab=98.03 E-value=6.5e-07 Score=73.65 Aligned_cols=100 Identities=23% Similarity=0.277 Sum_probs=59.7
Q ss_pred EEecCCCCCC--CCCCC-CCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcc---------------
Q psy17693 48 AACNNTGLSA--IPRGL-SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD--------------- 109 (152)
Q Consensus 48 ~~c~~~~l~~--iP~~~-~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~--------------- 109 (152)
+.|.++.++. +|.-. ...+++|++++ |.+..+|...+. .+..|+.|++++|+++.++..
T Consensus 364 LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~--kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 364 LYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLR--KLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN 440 (1081)
T ss_pred HHHhcCcccccchhhhccccceeeeeecc-cccccCCHHHHh--chHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC
Confidence 4555555543 33211 15666667777 666666666666 566666666666666554310
Q ss_pred ------cccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecCC
Q psy17693 110 ------AFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFREST 150 (152)
Q Consensus 110 ------~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~~ 150 (152)
-+..++.|+.+|++.|.|+.+--..-...++|++|||+.+.
T Consensus 441 ~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 441 QLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred ceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 24556777888888888776543322334678888887654
No 31
>KOG0532|consensus
Probab=98.02 E-value=6.7e-07 Score=70.32 Aligned_cols=104 Identities=24% Similarity=0.350 Sum_probs=66.4
Q ss_pred CCceeeecCCcceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCccccc
Q psy17693 35 HLCKCKWTNGRKGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS 112 (152)
Q Consensus 35 ~~C~C~~~~~~~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~ 112 (152)
..|.|.. +.+..++++++.+|+++. ..+..+|.+. |.+..++.... ++..|+.|.+..|.+..++++- .
T Consensus 139 ~lC~lpL----kvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~---~l~slr~l~vrRn~l~~lp~El-~ 209 (722)
T KOG0532|consen 139 GLCDLPL----KVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLG---YLTSLRDLNVRRNHLEDLPEEL-C 209 (722)
T ss_pred hhhcCcc----eeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHHhh---hHHHHHHHHHhhhhhhhCCHHH-h
Confidence 3577763 366777888888888765 4566677888 77777666533 3556666666666666655542 2
Q ss_pred CCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 113 GLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 113 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
. -.|..||++.|++..||-+ |++++.|++|-|.++
T Consensus 210 ~-LpLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 210 S-LPLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENN 244 (722)
T ss_pred C-CceeeeecccCceeecchh-hhhhhhheeeeeccC
Confidence 2 2456666777777666554 566666666666554
No 32
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=5.8e-06 Score=43.55 Aligned_cols=41 Identities=39% Similarity=0.577 Sum_probs=33.5
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCc
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~ 108 (152)
+++++|++++ |.|+.+++ .+. .+++|+.|++++|.++.+++
T Consensus 1 ~~L~~L~l~~-N~i~~l~~-~l~--~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPP-ELS--NLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETS-SS-SSHGG-HGT--TCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccC-CCCcccCc-hHh--CCCCCCEEEecCCCCCCCcC
Confidence 3678999999 99999987 366 79999999999999987754
No 33
>KOG1644|consensus
Probab=98.00 E-value=9e-06 Score=56.44 Aligned_cols=81 Identities=31% Similarity=0.376 Sum_probs=67.5
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCc-chhccCccCc
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP-DACGLCRSML 142 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~ 142 (152)
.....+|+++ |.+..++. |. +++.|..|.+.+|.|+.|.+.--.-+++|..|.|.+|.|..+.. +-+..++.|+
T Consensus 42 d~~d~iDLtd-Ndl~~l~~--lp--~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTD-NDLRKLDN--LP--HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred cccceecccc-cchhhccc--CC--CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 5677899999 99987764 66 78899999999999999999866678899999999999888653 4467788899
Q ss_pred EEEeecC
Q psy17693 143 FFYFRES 149 (152)
Q Consensus 143 ~L~L~~~ 149 (152)
.|.+-++
T Consensus 117 ~Ltll~N 123 (233)
T KOG1644|consen 117 YLTLLGN 123 (233)
T ss_pred eeeecCC
Confidence 8887654
No 34
>KOG4579|consensus
Probab=97.89 E-value=8.3e-07 Score=58.17 Aligned_cols=85 Identities=20% Similarity=0.249 Sum_probs=60.7
Q ss_pred eEEecCCCCCCCCCCCC---CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693 47 GAACNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~~---~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~ 123 (152)
.++.+++++..+|+.+. +.++.+++++ |.|..+|.. +. .++.|+.|+++.|.+... +..|..+.++..|+..
T Consensus 57 ~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE-~A--am~aLr~lNl~~N~l~~~-p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 57 KISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEE-LA--AMPALRSLNLRFNPLNAE-PRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHH-Hh--hhHHhhhcccccCccccc-hHHHHHHHhHHHhcCC
Confidence 46667777777776443 4677778888 888888777 55 577888888888877654 3345557778888888
Q ss_pred CCCCCccCcchhc
Q psy17693 124 KNRIHTLHPDACG 136 (152)
Q Consensus 124 ~N~l~~l~~~~~~ 136 (152)
+|.+..++-+.|.
T Consensus 132 ~na~~eid~dl~~ 144 (177)
T KOG4579|consen 132 ENARAEIDVDLFY 144 (177)
T ss_pred CCccccCcHHHhc
Confidence 8888777766543
No 35
>KOG0618|consensus
Probab=97.86 E-value=1.5e-06 Score=71.52 Aligned_cols=76 Identities=21% Similarity=0.182 Sum_probs=59.8
Q ss_pred CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEE
Q psy17693 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFF 144 (152)
Q Consensus 65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 144 (152)
.++.|.+.+ |.++.---..+. ++.+|+.|++++|++..++...+.++..|+.|+|++|+++.++ +....++.|++|
T Consensus 360 ~Lq~Lylan-N~Ltd~c~p~l~--~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL 435 (1081)
T KOG0618|consen 360 ALQELYLAN-NHLTDSCFPVLV--NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTL 435 (1081)
T ss_pred HHHHHHHhc-Ccccccchhhhc--cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHH
Confidence 356678888 888754434455 7889999999999999999999999999999999999999886 444444444443
No 36
>KOG4579|consensus
Probab=97.85 E-value=7.4e-07 Score=58.40 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=66.6
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF 143 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 143 (152)
..++.+++++ |.++..++..-. .++..+.+++++|.|+.++.+ |..++.|+.|+++.|++...+.-.+. +.++..
T Consensus 53 ~el~~i~ls~-N~fk~fp~kft~--kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~-L~~l~~ 127 (177)
T KOG4579|consen 53 YELTKISLSD-NGFKKFPKKFTI--KFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAP-LIKLDM 127 (177)
T ss_pred ceEEEEeccc-chhhhCCHHHhh--ccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHH-HHhHHH
Confidence 4677799999 999988876444 466899999999999999887 99999999999999999887655444 777777
Q ss_pred EEeecC
Q psy17693 144 FYFRES 149 (152)
Q Consensus 144 L~L~~~ 149 (152)
|+..++
T Consensus 128 Lds~~n 133 (177)
T KOG4579|consen 128 LDSPEN 133 (177)
T ss_pred hcCCCC
Confidence 776554
No 37
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.78 E-value=5.7e-05 Score=48.56 Aligned_cols=70 Identities=23% Similarity=0.394 Sum_probs=27.8
Q ss_pred CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccC
Q psy17693 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSM 141 (152)
Q Consensus 65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 141 (152)
.++.+.+. +.+..++...|. ...+++.+.+..+ +..++..+|.+. +++.+.+.. .++.++.+.|.++++|
T Consensus 59 ~l~~i~~~--~~~~~i~~~~F~--~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 59 SLESITFP--NNLKSIGDNAFS--NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp T-EEEEET--STT-EE-TTTTT--T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccc--cccccccccccc--ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 45555552 234455555555 4556666666544 555555566555 566655544 4555555566655544
No 38
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.75 E-value=0.00019 Score=62.28 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=52.1
Q ss_pred EEecCCCCCCCCCCC-CCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCC-cCeecCcccccCCCcCcEEeCCCC
Q psy17693 48 AACNNTGLSAIPRGL-SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDC-NITDIDPDAFSGLGILIELDLTKN 125 (152)
Q Consensus 48 ~~c~~~~l~~iP~~~-~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~L~~N 125 (152)
+...+..++.+|..+ +.+++.|++.+ +.++.++.+. . .+++|+.++++++ .+..++. +..+++|+.|+++++
T Consensus 594 L~~~~~~l~~lP~~f~~~~L~~L~L~~-s~l~~L~~~~-~--~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 594 LRWDKYPLRCMPSNFRPENLVKLQMQG-SKLEKLWDGV-H--SLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDC 667 (1153)
T ss_pred EEecCCCCCCCCCcCCccCCcEEECcC-cccccccccc-c--cCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCC
Confidence 344445556666543 36677777777 7776665543 3 4666777777654 3444432 445566666666654
Q ss_pred C-CCccCcchhccCccCcEEEeec
Q psy17693 126 R-IHTLHPDACGLCRSMLFFYFRE 148 (152)
Q Consensus 126 ~-l~~l~~~~~~~l~~L~~L~L~~ 148 (152)
. +..+|. .+..+++|+.|++++
T Consensus 668 ~~L~~lp~-si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 668 SSLVELPS-SIQYLNKLEDLDMSR 690 (1153)
T ss_pred CCccccch-hhhccCCCCEEeCCC
Confidence 3 444432 345555555555543
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.69 E-value=1.7e-05 Score=60.81 Aligned_cols=97 Identities=30% Similarity=0.414 Sum_probs=62.4
Q ss_pred eEEecCCCCCCCCCCCC--C-CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693 47 GAACNNTGLSAIPRGLS--K-DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~~--~-~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~ 123 (152)
..+..+..++++|.... . +++.+++++ |.+..++.. .. .+++|+.|++++|.++.+++.. ..++.|+.++++
T Consensus 120 ~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~-~~--~l~~L~~L~l~~N~l~~l~~~~-~~~~~L~~L~ls 194 (394)
T COG4886 120 SLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSP-LR--NLPNLKNLDLSFNDLSDLPKLL-SNLSNLNNLDLS 194 (394)
T ss_pred EEecCCcccccCccccccchhhcccccccc-cchhhhhhh-hh--ccccccccccCCchhhhhhhhh-hhhhhhhheecc
Confidence 45566666777775433 2 677888888 877777522 22 4677888888888887776642 256777778888
Q ss_pred CCCCCccCcchhccCccCcEEEeecC
Q psy17693 124 KNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 124 ~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+|+++.++... .....|.++.++++
T Consensus 195 ~N~i~~l~~~~-~~~~~L~~l~~~~N 219 (394)
T COG4886 195 GNKISDLPPEI-ELLSALEELDLSNN 219 (394)
T ss_pred CCccccCchhh-hhhhhhhhhhhcCC
Confidence 88888776642 22333566655544
No 40
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.65 E-value=0.00026 Score=61.40 Aligned_cols=97 Identities=19% Similarity=0.316 Sum_probs=70.4
Q ss_pred ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCC-cCeecCcccccCCCcCcEEeC
Q psy17693 46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDC-NITDIDPDAFSGLGILIELDL 122 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~L 122 (152)
..++-.+..+..+|+++. .+++.+++++++.+..++. +. .+++|+.|+++++ .+..+ |..+..+++|+.|++
T Consensus 614 ~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls--~l~~Le~L~L~~c~~L~~l-p~si~~L~~L~~L~L 688 (1153)
T PLN03210 614 VKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LS--MATNLETLKLSDCSSLVEL-PSSIQYLNKLEDLDM 688 (1153)
T ss_pred cEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cc--cCCcccEEEecCCCCcccc-chhhhccCCCCEEeC
Confidence 356666677777777654 6889999988235666664 55 5789999999887 45555 445788899999999
Q ss_pred CCC-CCCccCcchhccCccCcEEEeecC
Q psy17693 123 TKN-RIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 123 ~~N-~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+++ .++.+|... ++++|+.|++++.
T Consensus 689 ~~c~~L~~Lp~~i--~l~sL~~L~Lsgc 714 (1153)
T PLN03210 689 SRCENLEILPTGI--NLKSLYRLNLSGC 714 (1153)
T ss_pred CCCCCcCccCCcC--CCCCCCEEeCCCC
Confidence 885 577777653 5777888877653
No 41
>KOG0531|consensus
Probab=97.58 E-value=3.6e-05 Score=59.58 Aligned_cols=76 Identities=30% Similarity=0.307 Sum_probs=36.2
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF 143 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 143 (152)
.+++.+++.+ |.|+.+... .. .+++|+.|++++|.|+.+.+ +..++.|+.|++++|.|+.+.. |..+..|+.
T Consensus 95 ~~l~~l~l~~-n~i~~i~~~-l~--~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~ 166 (414)
T KOG0531|consen 95 KSLEALDLYD-NKIEKIENL-LS--SLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG--LESLKSLKL 166 (414)
T ss_pred cceeeeeccc-cchhhcccc-hh--hhhcchheeccccccccccc--hhhccchhhheeccCcchhccC--Cccchhhhc
Confidence 4455555555 555554441 11 24455555555555555543 3334445555555555555422 233444444
Q ss_pred EEee
Q psy17693 144 FYFR 147 (152)
Q Consensus 144 L~L~ 147 (152)
++++
T Consensus 167 l~l~ 170 (414)
T KOG0531|consen 167 LDLS 170 (414)
T ss_pred ccCC
Confidence 4443
No 42
>KOG0531|consensus
Probab=97.51 E-value=3e-05 Score=60.01 Aligned_cols=96 Identities=27% Similarity=0.217 Sum_probs=75.7
Q ss_pred eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693 47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~ 124 (152)
.++-.++.+..+...++ .++++|++++ |.|+.+..-. .+..|+.|++++|.|+.+.. |..+..|+.+++++
T Consensus 99 ~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~----~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 99 ALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEGLS----TLTLLKELNLSGNLISDISG--LESLKSLKLLDLSY 171 (414)
T ss_pred eeeccccchhhcccchhhhhcchheeccc-cccccccchh----hccchhhheeccCcchhccC--CccchhhhcccCCc
Confidence 56667788887775243 7899999999 9999988754 46679999999999999866 66699999999999
Q ss_pred CCCCccCcchhccCccCcEEEeecC
Q psy17693 125 NRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 125 N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
|++..+..+....+.+++.+++.+.
T Consensus 172 n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 172 NRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred chhhhhhhhhhhhccchHHHhccCC
Confidence 9999997730355666777766654
No 43
>KOG4658|consensus
Probab=97.48 E-value=9.7e-05 Score=62.12 Aligned_cols=98 Identities=20% Similarity=0.295 Sum_probs=73.0
Q ss_pred EEecCCCCCCCCCCCC-CCcEEEEecCCCc--ccccCCCcccccCCCcccEEEccCC-cCeecCcccccCCCcCcEEeCC
Q psy17693 48 AACNNTGLSAIPRGLS-KDVQYLDLGKCNV--IFCFPADAFRSTGLVNLHNLLLKDC-NITDIDPDAFSGLGILIELDLT 123 (152)
Q Consensus 48 ~~c~~~~l~~iP~~~~-~~l~~L~l~~~n~--i~~i~~~~f~~~~l~~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~L~ 123 (152)
+.-.++.+..++...- +.++.|-+.+ |. +..++...|. .++.|+.||+++| .+..+ |...+.+-+|++|+++
T Consensus 528 ~s~~~~~~~~~~~~~~~~~L~tLll~~-n~~~l~~is~~ff~--~m~~LrVLDLs~~~~l~~L-P~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 528 MSLMNNKIEHIAGSSENPKLRTLLLQR-NSDWLLEISGEFFR--SLPLLRVLDLSGNSSLSKL-PSSIGELVHLRYLDLS 603 (889)
T ss_pred EEEeccchhhccCCCCCCccceEEEee-cchhhhhcCHHHHh--hCcceEEEECCCCCccCcC-ChHHhhhhhhhccccc
Confidence 3334455555554322 4688888888 75 7778877787 7889999999987 55665 4456788899999999
Q ss_pred CCCCCccCcchhccCccCcEEEeecCC
Q psy17693 124 KNRIHTLHPDACGLCRSMLFFYFREST 150 (152)
Q Consensus 124 ~N~l~~l~~~~~~~l~~L~~L~L~~~~ 150 (152)
+..+..+|.+ +++++.|.+|++..+.
T Consensus 604 ~t~I~~LP~~-l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 604 DTGISHLPSG-LGNLKKLIYLNLEVTG 629 (889)
T ss_pred CCCccccchH-HHHHHhhheecccccc
Confidence 9999988776 6888888888887654
No 44
>KOG1859|consensus
Probab=97.46 E-value=3.6e-06 Score=68.20 Aligned_cols=94 Identities=20% Similarity=0.182 Sum_probs=49.5
Q ss_pred eEEecCCCCCCCCCCC--CCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693 47 GAACNNTGLSAIPRGL--SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~--~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~ 124 (152)
.++|+-+.++.+-..+ -+.++.|++++ |++..+. ... .++.|+.||++.|.+..++.-.-.++. |+.|.+++
T Consensus 168 ~a~fsyN~L~~mD~SLqll~ale~LnLsh-Nk~~~v~--~Lr--~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 168 TASFSYNRLVLMDESLQLLPALESLNLSH-NKFTKVD--NLR--RLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hhhcchhhHHhHHHHHHHHHHhhhhccch-hhhhhhH--HHH--hcccccccccccchhccccccchhhhh-heeeeecc
Confidence 4444444444333221 14455666666 6666655 233 456666666666666665543333333 66666666
Q ss_pred CCCCccCcchhccCccCcEEEeec
Q psy17693 125 NRIHTLHPDACGLCRSMLFFYFRE 148 (152)
Q Consensus 125 N~l~~l~~~~~~~l~~L~~L~L~~ 148 (152)
|.++++.. ..++++|..||++.
T Consensus 242 N~l~tL~g--ie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 242 NALTTLRG--IENLKSLYGLDLSY 263 (1096)
T ss_pred cHHHhhhh--HHhhhhhhccchhH
Confidence 66665522 34555566665553
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.22 E-value=0.00031 Score=53.79 Aligned_cols=56 Identities=27% Similarity=0.422 Sum_probs=38.9
Q ss_pred CCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeec
Q psy17693 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRE 148 (152)
Q Consensus 90 l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 148 (152)
+.++..+.+.+|++..+ +.....+++++.|++++|.++.++. +..+.+++.|+++.
T Consensus 231 ~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~ 286 (394)
T COG4886 231 LKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSG 286 (394)
T ss_pred cccccccccCCceeeec-cchhccccccceecccccccccccc--ccccCccCEEeccC
Confidence 44455555555555543 2345667778889999999888876 67788888888875
No 46
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.21 E-value=9.1e-05 Score=32.91 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=11.5
Q ss_pred CcEEeCCCCCCCccCcchhcc
Q psy17693 117 LIELDLTKNRIHTLHPDACGL 137 (152)
Q Consensus 117 L~~L~L~~N~l~~l~~~~~~~ 137 (152)
|++|++++|+|+.+|++ |++
T Consensus 2 L~~Ldls~n~l~~ip~~-~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS-FSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTT-TTT
T ss_pred ccEEECCCCcCEeCChh-hcC
Confidence 55666666666665555 443
No 47
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=97.19 E-value=0.00033 Score=32.29 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=18.4
Q ss_pred CCcCcEEeCCCCCCCccCcchhc
Q psy17693 114 LGILIELDLTKNRIHTLHPDACG 136 (152)
Q Consensus 114 l~~L~~L~L~~N~l~~l~~~~~~ 136 (152)
+++|+.|+|++|+|+.+++++|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 45788888888888888888775
No 48
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=97.19 E-value=0.00033 Score=32.29 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=18.4
Q ss_pred CCcCcEEeCCCCCCCccCcchhc
Q psy17693 114 LGILIELDLTKNRIHTLHPDACG 136 (152)
Q Consensus 114 l~~L~~L~L~~N~l~~l~~~~~~ 136 (152)
+++|+.|+|++|+|+.+++++|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 45788888888888888888775
No 49
>KOG2123|consensus
Probab=97.14 E-value=1e-05 Score=58.91 Aligned_cols=96 Identities=20% Similarity=0.153 Sum_probs=69.6
Q ss_pred cceEEecCCCCCCCCCCCC-CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcc-cccCCCcCcEEeC
Q psy17693 45 RKGAACNNTGLSAIPRGLS-KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD-AFSGLGILIELDL 122 (152)
Q Consensus 45 ~~~~~c~~~~l~~iP~~~~-~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~-~f~~l~~L~~L~L 122 (152)
.+.++|-+-++..|.-... +.+++|.|+- |.|+++.+ |. .+++|+.|+|..|.|..+..- .+.++++|+.|.|
T Consensus 21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSv-NkIssL~p--l~--rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDISICEKMPLLEVLSLSV-NKISSLAP--LQ--RCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred hhhhcccCCCccHHHHHHhcccceeEEeec-cccccchh--HH--HHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 3467787777766542111 6788899999 99988765 44 678899999999999887663 3468899999999
Q ss_pred CCCCCCccC-----cchhccCccCcEEE
Q psy17693 123 TKNRIHTLH-----PDACGLCRSMLFFY 145 (152)
Q Consensus 123 ~~N~l~~l~-----~~~~~~l~~L~~L~ 145 (152)
..|.-..-. ...++-+++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 998855432 23466778887775
No 50
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.11 E-value=0.00019 Score=53.09 Aligned_cols=15 Identities=33% Similarity=0.244 Sum_probs=7.4
Q ss_pred CCcCcEEeCCCCCCC
Q psy17693 114 LGILIELDLTKNRIH 128 (152)
Q Consensus 114 l~~L~~L~L~~N~l~ 128 (152)
+++|+.|++++|.++
T Consensus 192 ~~~L~~L~L~~n~i~ 206 (319)
T cd00116 192 NCNLEVLDLNNNGLT 206 (319)
T ss_pred CCCCCEEeccCCccC
Confidence 345555555555444
No 51
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.09 E-value=0.00018 Score=53.23 Aligned_cols=81 Identities=19% Similarity=0.168 Sum_probs=43.2
Q ss_pred cEEEEecCCCcccccCC----CcccccCC-CcccEEEccCCcCeecC----cccccCCCcCcEEeCCCCCCCccC----c
Q psy17693 66 VQYLDLGKCNVIFCFPA----DAFRSTGL-VNLHNLLLKDCNITDID----PDAFSGLGILIELDLTKNRIHTLH----P 132 (152)
Q Consensus 66 l~~L~l~~~n~i~~i~~----~~f~~~~l-~~L~~L~l~~n~l~~i~----~~~f~~l~~L~~L~L~~N~l~~l~----~ 132 (152)
++.|++++ |.+..... ..+. .+ ++|+.+++++|.++.-. ...|..+.+|+.|++++|.++.-. .
T Consensus 110 L~~L~ls~-~~~~~~~~~~l~~~l~--~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 186 (319)
T cd00116 110 LQELKLNN-NGLGDRGLRLLAKGLK--DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA 186 (319)
T ss_pred ccEEEeeC-CccchHHHHHHHHHHH--hCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHH
Confidence 66666666 65542111 1122 23 56677777777665211 223555666777777777766311 1
Q ss_pred chhccCccCcEEEeecC
Q psy17693 133 DACGLCRSMLFFYFRES 149 (152)
Q Consensus 133 ~~~~~l~~L~~L~L~~~ 149 (152)
..+...++|+.|++++.
T Consensus 187 ~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 187 EGLKANCNLEVLDLNNN 203 (319)
T ss_pred HHHHhCCCCCEEeccCC
Confidence 22344457777777654
No 52
>KOG0532|consensus
Probab=97.05 E-value=0.00011 Score=58.20 Aligned_cols=108 Identities=19% Similarity=0.269 Sum_probs=84.2
Q ss_pred CCceeeecCCcceEEecCCCCCCCCCCCC-CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccC
Q psy17693 35 HLCKCKWTNGRKGAACNNTGLSAIPRGLS-KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSG 113 (152)
Q Consensus 35 ~~C~C~~~~~~~~~~c~~~~l~~iP~~~~-~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~ 113 (152)
..|.|... ....++.+.+++..+|.++. --++.|.+++ |+++.+++.-- ....|..|+.+.|.+..++++ ..+
T Consensus 114 p~~i~~L~-~lt~l~ls~NqlS~lp~~lC~lpLkvli~sN-Nkl~~lp~~ig---~~~tl~~ld~s~nei~slpsq-l~~ 187 (722)
T KOG0532|consen 114 PEAICNLE-ALTFLDLSSNQLSHLPDGLCDLPLKVLIVSN-NKLTSLPEEIG---LLPTLAHLDVSKNEIQSLPSQ-LGY 187 (722)
T ss_pred chhhhhhh-HHHHhhhccchhhcCChhhhcCcceeEEEec-CccccCCcccc---cchhHHHhhhhhhhhhhchHH-hhh
Confidence 34555432 12356777788888888765 5788899999 99999888643 477899999999999999776 678
Q ss_pred CCcCcEEeCCCCCCCccCcchhccCccCcEEEeecCC
Q psy17693 114 LGILIELDLTKNRIHTLHPDACGLCRSMLFFYFREST 150 (152)
Q Consensus 114 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~~ 150 (152)
+.+|+.|.+.+|++..+++... .++ |..||++.+.
T Consensus 188 l~slr~l~vrRn~l~~lp~El~-~Lp-Li~lDfScNk 222 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLEDLPEELC-SLP-LIRLDFSCNK 222 (722)
T ss_pred HHHHHHHHHhhhhhhhCCHHHh-CCc-eeeeecccCc
Confidence 9999999999999999988754 565 8889988753
No 53
>KOG3207|consensus
Probab=96.99 E-value=0.00027 Score=54.38 Aligned_cols=88 Identities=19% Similarity=0.210 Sum_probs=61.2
Q ss_pred CCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc------cCCCcCcEEeCCCCCCCc
Q psy17693 56 SAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF------SGLGILIELDLTKNRIHT 129 (152)
Q Consensus 56 ~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f------~~l~~L~~L~L~~N~l~~ 129 (152)
...+..++..++.|++++ |.+-..+....-+ .++.|..|+++.+.+..|....- ..+++|++|+++.|++..
T Consensus 238 ~~~~~~i~~~L~~LdLs~-N~li~~~~~~~~~-~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 238 KATSTKILQTLQELDLSN-NNLIDFDQGYKVG-TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred ecchhhhhhHHhhccccC-Ccccccccccccc-cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 345556678899999999 8777666443321 57888889999998887754322 457899999999999876
Q ss_pred cCc-chhccCccCcEEE
Q psy17693 130 LHP-DACGLCRSMLFFY 145 (152)
Q Consensus 130 l~~-~~~~~l~~L~~L~ 145 (152)
.+. +....+++|+.|.
T Consensus 316 w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 316 WRSLNHLRTLENLKHLR 332 (505)
T ss_pred ccccchhhccchhhhhh
Confidence 543 3344455555544
No 54
>KOG1859|consensus
Probab=96.90 E-value=7e-05 Score=61.03 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=65.0
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF 143 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 143 (152)
..+...++++ |.+..++.. ++ -++.++.|++++|+++.+. ....+++|+.|||+.|.++.++.-.-.++. |..
T Consensus 164 n~L~~a~fsy-N~L~~mD~S-Lq--ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 164 NKLATASFSY-NRLVLMDES-LQ--LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQL 236 (1096)
T ss_pred hhHhhhhcch-hhHHhHHHH-HH--HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-hee
Confidence 4567778899 988877654 34 4688999999999999885 578999999999999999999875555665 999
Q ss_pred EEeecC
Q psy17693 144 FYFRES 149 (152)
Q Consensus 144 L~L~~~ 149 (152)
|+++|+
T Consensus 237 L~lrnN 242 (1096)
T KOG1859|consen 237 LNLRNN 242 (1096)
T ss_pred eeeccc
Confidence 999876
No 55
>KOG4658|consensus
Probab=96.69 E-value=0.0012 Score=55.77 Aligned_cols=82 Identities=23% Similarity=0.235 Sum_probs=65.3
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF 143 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 143 (152)
+.+.+||+++|..+..+|.. .. .+.+|+.|++++..+.+++.+ +..+.+|.+|++..+.-....++....+.+|++
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~-I~--~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSS-IG--ELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred cceEEEECCCCCccCcCChH-Hh--hhhhhhcccccCCCccccchH-HHHHHhhheeccccccccccccchhhhcccccE
Confidence 67899999982355566554 44 588999999999999988665 889999999999988755555787888999999
Q ss_pred EEeecC
Q psy17693 144 FYFRES 149 (152)
Q Consensus 144 L~L~~~ 149 (152)
|.+-.+
T Consensus 647 L~l~~s 652 (889)
T KOG4658|consen 647 LRLPRS 652 (889)
T ss_pred EEeecc
Confidence 988654
No 56
>KOG2123|consensus
Probab=96.66 E-value=3.5e-05 Score=56.24 Aligned_cols=79 Identities=22% Similarity=0.161 Sum_probs=65.6
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCc-chhccCccCc
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP-DACGLCRSML 142 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~ 142 (152)
.++++|++.+ ..+..|.-. . .++.|+.|.|+-|+|+.+.+ |..+.+|+.|+|..|.|..+.. ..+.++++|+
T Consensus 19 ~~vkKLNcwg-~~L~DIsic--~--kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 19 ENVKKLNCWG-CGLDDISIC--E--KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHhhhhcccC-CCccHHHHH--H--hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 4567788888 888876543 2 57889999999999999977 8889999999999999998864 4578999999
Q ss_pred EEEeecC
Q psy17693 143 FFYFRES 149 (152)
Q Consensus 143 ~L~L~~~ 149 (152)
.|.|.++
T Consensus 92 ~LWL~EN 98 (388)
T KOG2123|consen 92 TLWLDEN 98 (388)
T ss_pred hHhhccC
Confidence 9888764
No 57
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.53 E-value=0.0016 Score=28.79 Aligned_cols=19 Identities=42% Similarity=0.499 Sum_probs=10.9
Q ss_pred ccEEEccCCcCeecCccccc
Q psy17693 93 LHNLLLKDCNITDIDPDAFS 112 (152)
Q Consensus 93 L~~L~l~~n~l~~i~~~~f~ 112 (152)
|+.|++++|.++.+++. |.
T Consensus 2 L~~Ldls~n~l~~ip~~-~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS-FS 20 (22)
T ss_dssp ESEEEETSSEESEEGTT-TT
T ss_pred ccEEECCCCcCEeCChh-hc
Confidence 55666666666655554 44
No 58
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.47 E-value=0.0017 Score=26.86 Aligned_cols=16 Identities=44% Similarity=0.607 Sum_probs=8.1
Q ss_pred cCcEEeCCCCCCCccC
Q psy17693 116 ILIELDLTKNRIHTLH 131 (152)
Q Consensus 116 ~L~~L~L~~N~l~~l~ 131 (152)
+|+.|++++|+|+++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5667777777766653
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.43 E-value=0.014 Score=45.31 Aligned_cols=55 Identities=16% Similarity=0.419 Sum_probs=38.3
Q ss_pred ceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCC-cCeec
Q psy17693 46 KGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDC-NITDI 106 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n-~l~~i 106 (152)
..++-++..++.+| .+|.+++.|.+++++.++.++.. + ..+|+.|.++++ .+..+
T Consensus 55 ~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~-L----P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 55 GRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGS-I----PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred CEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCch-h----hhhhhheEccCccccccc
Confidence 35666677888998 68889999999874565555532 2 246888888877 55544
No 60
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.37 E-value=0.0024 Score=29.32 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=18.9
Q ss_pred CCcccEEEccCCcCeecCccccc
Q psy17693 90 LVNLHNLLLKDCNITDIDPDAFS 112 (152)
Q Consensus 90 l~~L~~L~l~~n~l~~i~~~~f~ 112 (152)
+++|+.|++++|.|+.+++++|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35788899999999998888775
No 61
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.37 E-value=0.0024 Score=29.32 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=18.9
Q ss_pred CCcccEEEccCCcCeecCccccc
Q psy17693 90 LVNLHNLLLKDCNITDIDPDAFS 112 (152)
Q Consensus 90 l~~L~~L~l~~n~l~~i~~~~f~ 112 (152)
+++|+.|++++|.|+.+++++|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35788899999999998888775
No 62
>KOG2739|consensus
Probab=96.12 E-value=0.0038 Score=45.02 Aligned_cols=79 Identities=23% Similarity=0.217 Sum_probs=46.7
Q ss_pred CCcEEEEecCCC--cccc-cCCCcccccCCCcccEEEccCCcCeecCc-ccccCCCcCcEEeCCCCCCCccC---cchhc
Q psy17693 64 KDVQYLDLGKCN--VIFC-FPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHTLH---PDACG 136 (152)
Q Consensus 64 ~~l~~L~l~~~n--~i~~-i~~~~f~~~~l~~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~L~~N~l~~l~---~~~~~ 136 (152)
+++++|.++. | ++.. +..-+ . ..++|+.++++.|+|.-+.. .....+.+|..|++.++..+.+. ...|.
T Consensus 65 p~LkkL~lsd-n~~~~~~~l~vl~-e--~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 65 PKLKKLELSD-NYRRVSGGLEVLA-E--KAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred chhhhhcccC-Ccccccccceehh-h--hCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 5777888887 7 3321 22111 1 24778888888887654221 11345666777777777655543 34566
Q ss_pred cCccCcEEEe
Q psy17693 137 LCRSMLFFYF 146 (152)
Q Consensus 137 ~l~~L~~L~L 146 (152)
-+++|++|+-
T Consensus 141 ll~~L~~LD~ 150 (260)
T KOG2739|consen 141 LLPSLKYLDG 150 (260)
T ss_pred Hhhhhccccc
Confidence 6777777664
No 63
>KOG2739|consensus
Probab=96.04 E-value=0.0039 Score=44.94 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=51.8
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCC--cCee-cCcccccCCCcCcEEeCCCCCCCccCc-chhccCc
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDC--NITD-IDPDAFSGLGILIELDLTKNRIHTLHP-DACGLCR 139 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n--~l~~-i~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~~~l~ 139 (152)
..++.+.+.+ -.++++.. |. .+++|++|.++.| .+.. +..-+ ..+++|+++++++|+|+-+.. .....+.
T Consensus 43 ~~le~ls~~n-~gltt~~~--~P--~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 43 VELELLSVIN-VGLTTLTN--FP--KLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cchhhhhhhc-cceeeccc--CC--CcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhc
Confidence 3444555555 55555443 44 5789999999999 4332 22222 345999999999999875321 2245677
Q ss_pred cCcEEEeecCC
Q psy17693 140 SMLFFYFREST 150 (152)
Q Consensus 140 ~L~~L~L~~~~ 150 (152)
+|..|++.+..
T Consensus 117 nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 117 NLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCC
Confidence 78888877654
No 64
>KOG3207|consensus
Probab=95.43 E-value=0.0027 Score=49.07 Aligned_cols=60 Identities=22% Similarity=0.232 Sum_probs=30.7
Q ss_pred CCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCc-chhccCccCcEEEeecC
Q psy17693 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP-DACGLCRSMLFFYFRES 149 (152)
Q Consensus 90 l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~~ 149 (152)
+++++.|+++.|....+....+..+..|+.|||++|++-..+. .....++.|..|+++++
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 4555555555554333333333445556666666666555542 23345555555555544
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.55 E-value=0.11 Score=40.44 Aligned_cols=89 Identities=16% Similarity=0.193 Sum_probs=48.9
Q ss_pred eEEecC-CCCCCCCCCCCCCcEEEEecCCC-cccccCCCcccccCCCcccEEEccCCcC---eecCcc--cc--------
Q psy17693 47 GAACNN-TGLSAIPRGLSKDVQYLDLGKCN-VIFCFPADAFRSTGLVNLHNLLLKDCNI---TDIDPD--AF-------- 111 (152)
Q Consensus 47 ~~~c~~-~~l~~iP~~~~~~l~~L~l~~~n-~i~~i~~~~f~~~~l~~L~~L~l~~n~l---~~i~~~--~f-------- 111 (152)
.+..++ ..++.+|+.+|.+++.|.+++ + .+..+|+ +|+.|++..+.. ..++++ .+
T Consensus 76 sL~Lsnc~nLtsLP~~LP~nLe~L~Ls~-Cs~L~sLP~---------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~ 145 (426)
T PRK15386 76 EITIENCNNLTTLPGSIPEGLEKLTVCH-CPEISGLPE---------SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPE 145 (426)
T ss_pred EEEccCCCCcccCCchhhhhhhheEccC-ccccccccc---------ccceEEeCCCCCcccccCcchHhheeccccccc
Confidence 344332 556778888888899999888 6 6554432 234444444332 222110 00
Q ss_pred ------cCC-CcCcEEeCCCCCCCccCcchhccCccCcEEEeec
Q psy17693 112 ------SGL-GILIELDLTKNRIHTLHPDACGLCRSMLFFYFRE 148 (152)
Q Consensus 112 ------~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 148 (152)
..+ ++|+.|+++++....++++.- .+|+.|++++
T Consensus 146 ~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP---~SLk~L~ls~ 186 (426)
T PRK15386 146 NQARIDNLISPSLKTLSLTGCSNIILPEKLP---ESLQSITLHI 186 (426)
T ss_pred cccccccccCCcccEEEecCCCcccCccccc---ccCcEEEecc
Confidence 012 467888888777655544322 3566666654
No 66
>KOG1909|consensus
Probab=94.51 E-value=0.024 Score=42.75 Aligned_cols=57 Identities=18% Similarity=0.083 Sum_probs=25.5
Q ss_pred CcccEEEccCCcCee----cCcccccCCCcCcEEeCCCCCCCccC----cchhccCccCcEEEee
Q psy17693 91 VNLHNLLLKDCNITD----IDPDAFSGLGILIELDLTKNRIHTLH----PDACGLCRSMLFFYFR 147 (152)
Q Consensus 91 ~~L~~L~l~~n~l~~----i~~~~f~~l~~L~~L~L~~N~l~~l~----~~~~~~l~~L~~L~L~ 147 (152)
+.|+.+.++.|.|.. +...+|..++.|+.|||.+|-++.-. .+++..++.|++++++
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 445555555554432 11233444555555555555544322 2234444445555444
No 67
>KOG2982|consensus
Probab=94.33 E-value=0.01 Score=44.18 Aligned_cols=84 Identities=18% Similarity=0.069 Sum_probs=50.8
Q ss_pred CCcEEEEecCCCcccccCCC--cccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcc-hhccCcc
Q psy17693 64 KDVQYLDLGKCNVIFCFPAD--AFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPD-ACGLCRS 140 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~--~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~ 140 (152)
..++.+|+.+ |.|.....- -.. .++.++.|+++.|.+...-..--..+.+|+.|-|.+..+..-..+ ....++.
T Consensus 71 ~~v~elDL~~-N~iSdWseI~~ile--~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 71 TDVKELDLTG-NLISDWSEIGAILE--QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhccc-chhccHHHHHHHHh--cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 5567788888 877654331 123 577888888888877643222113566777777777665433222 2445666
Q ss_pred CcEEEeecCC
Q psy17693 141 MLFFYFREST 150 (152)
Q Consensus 141 L~~L~L~~~~ 150 (152)
+++|++++++
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 6777666553
No 68
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=94.25 E-value=0.044 Score=25.23 Aligned_cols=18 Identities=44% Similarity=0.650 Sum_probs=13.6
Q ss_pred CCcCcEEeCCCCCCCccC
Q psy17693 114 LGILIELDLTKNRIHTLH 131 (152)
Q Consensus 114 l~~L~~L~L~~N~l~~l~ 131 (152)
+.+|+.|++++|+|+.++
T Consensus 1 L~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNKIKKIE 18 (26)
T ss_pred CCccCEEECCCCccceec
Confidence 356788888888887764
No 69
>KOG1909|consensus
Probab=94.09 E-value=0.05 Score=41.10 Aligned_cols=99 Identities=20% Similarity=0.090 Sum_probs=63.1
Q ss_pred ceEEecCCCCCCCCCC-------CCCCcEEEEecCCCccccc----CCCcccccCCCcccEEEccCCcCeecCc----cc
Q psy17693 46 KGAACNNTGLSAIPRG-------LSKDVQYLDLGKCNVIFCF----PADAFRSTGLVNLHNLLLKDCNITDIDP----DA 110 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~-------~~~~l~~L~l~~~n~i~~i----~~~~f~~~~l~~L~~L~l~~n~l~~i~~----~~ 110 (152)
+++.|.++.+..-+.. ..+.++.+.++. |.|..- -..+|. ..++|+.|++.+|.++.-.. .+
T Consensus 160 rv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~--~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 160 RVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALE--HCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred EEEEeeccccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHH--hCCcceeeecccchhhhHHHHHHHHH
Confidence 4788887777655531 115777888888 777532 223445 57888888888887765332 45
Q ss_pred ccCCCcCcEEeCCCCCCCccCcchhc-----cCccCcEEEee
Q psy17693 111 FSGLGILIELDLTKNRIHTLHPDACG-----LCRSMLFFYFR 147 (152)
Q Consensus 111 f~~l~~L~~L~L~~N~l~~l~~~~~~-----~l~~L~~L~L~ 147 (152)
+..++.|+.+++++..+..-...+|. ..++|..+.+.
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~ 278 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELA 278 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccC
Confidence 66677788888888777764433322 35566666654
No 70
>KOG3665|consensus
Probab=93.86 E-value=0.035 Score=46.05 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=15.4
Q ss_pred CCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL 122 (152)
Q Consensus 89 ~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L 122 (152)
++++|..||+++..++.+ ...+.+++|+.|.+
T Consensus 171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~m 202 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSM 202 (699)
T ss_pred ccCccceeecCCCCccCc--HHHhccccHHHHhc
Confidence 355566666665555544 12334444444433
No 71
>KOG3665|consensus
Probab=93.52 E-value=0.016 Score=47.94 Aligned_cols=64 Identities=22% Similarity=0.358 Sum_probs=42.0
Q ss_pred CCcEEEEecCCCcccc--cCCCcccccCCCcccEEEccCCcCeecC-cccccCCCcCcEEeCCCCCCCcc
Q psy17693 64 KDVQYLDLGKCNVIFC--FPADAFRSTGLVNLHNLLLKDCNITDID-PDAFSGLGILIELDLTKNRIHTL 130 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~--i~~~~f~~~~l~~L~~L~l~~n~l~~i~-~~~f~~l~~L~~L~L~~N~l~~l 130 (152)
.+++.|+++| ...-. .+..-.. -+|+|+.|.+.+-.+..-+ ...+.++++|..||+++.+++.+
T Consensus 122 ~nL~~LdI~G-~~~~s~~W~~kig~--~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl 188 (699)
T KOG3665|consen 122 QNLQHLDISG-SELFSNGWPKKIGT--MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL 188 (699)
T ss_pred HhhhhcCccc-cchhhccHHHHHhh--hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc
Confidence 4577888877 53321 1111112 4789999999886654322 23456789999999999998865
No 72
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=92.85 E-value=0.08 Score=24.35 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=14.8
Q ss_pred CcCcEEeCCCCCCCccCc
Q psy17693 115 GILIELDLTKNRIHTLHP 132 (152)
Q Consensus 115 ~~L~~L~L~~N~l~~l~~ 132 (152)
++|+.|++++|+|+++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467889999999998875
No 73
>KOG3864|consensus
Probab=90.75 E-value=0.037 Score=38.80 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=50.1
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCc------CeecCcccccCCCcCcEEeCCCC-CCCccCcchhc
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCN------ITDIDPDAFSGLGILIELDLTKN-RIHTLHPDACG 136 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~------l~~i~~~~f~~l~~L~~L~L~~N-~l~~l~~~~~~ 136 (152)
-.++.+|-++ ..|..+.-..+. +++.++.|.+.+.. +..+.+ ..++|+.|+++++ +|++-.-..+.
T Consensus 101 ~~IeaVDAsd-s~I~~eGle~L~--~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 101 VKIEAVDASD-SSIMYEGLEHLR--DLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred ceEEEEecCC-chHHHHHHHHHh--ccchhhhheeccccchhhHHHHHhcc----cccchheeeccCCCeechhHHHHHH
Confidence 3567788888 777655544555 56666666665543 222322 3578899999977 47776556667
Q ss_pred cCccCcEEEeec
Q psy17693 137 LCRSMLFFYFRE 148 (152)
Q Consensus 137 ~l~~L~~L~L~~ 148 (152)
.+++|+.|.+.+
T Consensus 174 ~lknLr~L~l~~ 185 (221)
T KOG3864|consen 174 KLKNLRRLHLYD 185 (221)
T ss_pred HhhhhHHHHhcC
Confidence 777777776653
No 74
>KOG2982|consensus
Probab=87.50 E-value=0.52 Score=35.39 Aligned_cols=63 Identities=19% Similarity=0.177 Sum_probs=45.4
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc-cCCCcCcEEeCCCCCCCc
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF-SGLGILIELDLTKNRIHT 129 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f-~~l~~L~~L~L~~N~l~~ 129 (152)
+.++.|+++. |.+.......-. ...+|+.|.+.+..+.+-...+| ..+|.++.++++.|.++.
T Consensus 97 P~l~~LNls~-N~L~s~I~~lp~--p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq 160 (418)
T KOG2982|consen 97 PALTTLNLSC-NSLSSDIKSLPL--PLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ 160 (418)
T ss_pred ccceEeeccC-CcCCCccccCcc--cccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh
Confidence 5688999999 887653332212 46789999999988877655444 468888899999886554
No 75
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=87.36 E-value=0.33 Score=45.66 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=25.9
Q ss_pred EecCCCcccccCCCcccccCCCcccEEEccCCcCe
Q psy17693 70 DLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNIT 104 (152)
Q Consensus 70 ~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~ 104 (152)
||++ |+|+.|+++.|. .+.+|+.|+|++|.+.
T Consensus 1 DLSn-N~LstLp~g~F~--~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISN-NKISTIEEGICA--NLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCC-CcCCccChHHhc--cCCCceEEEeeCCccc
Confidence 4677 888888888888 7888888888888653
No 76
>KOG0473|consensus
Probab=87.34 E-value=0.0078 Score=43.26 Aligned_cols=80 Identities=19% Similarity=0.066 Sum_probs=55.8
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF 143 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 143 (152)
...+.||++. |.+-..... |+ -++.+.+++++.|.+...+.+ |..+..+..+++.+|.++..| ..|...+.+++
T Consensus 42 kr~tvld~~s-~r~vn~~~n-~s--~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p-~s~~k~~~~k~ 115 (326)
T KOG0473|consen 42 KRVTVLDLSS-NRLVNLGKN-FS--ILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQP-KSQKKEPHPKK 115 (326)
T ss_pred ceeeeehhhh-hHHHhhccc-hH--HHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCC-ccccccCCcch
Confidence 6778888888 877655443 44 467788888888888777554 566677777777777777664 34677777777
Q ss_pred EEeecC
Q psy17693 144 FYFRES 149 (152)
Q Consensus 144 L~L~~~ 149 (152)
+++..+
T Consensus 116 ~e~k~~ 121 (326)
T KOG0473|consen 116 NEQKKT 121 (326)
T ss_pred hhhccC
Confidence 666544
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.29 E-value=0.1 Score=23.18 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=6.4
Q ss_pred CcCcEEeCCCCCCC
Q psy17693 115 GILIELDLTKNRIH 128 (152)
Q Consensus 115 ~~L~~L~L~~N~l~ 128 (152)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555544
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.32 E-value=0.85 Score=21.10 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=12.1
Q ss_pred CcCcEEeCCCCCCCc
Q psy17693 115 GILIELDLTKNRIHT 129 (152)
Q Consensus 115 ~~L~~L~L~~N~l~~ 129 (152)
++|+.|+|++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 468889999998864
No 79
>KOG0473|consensus
Probab=81.55 E-value=0.018 Score=41.42 Aligned_cols=68 Identities=24% Similarity=0.278 Sum_probs=49.2
Q ss_pred ccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeec
Q psy17693 77 IFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRE 148 (152)
Q Consensus 77 i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 148 (152)
+..|+-.... .+...+.||++.|++..+... |+-+..+..++++.|.+..+|.| |.....+..+++.+
T Consensus 30 ~s~~~v~ei~--~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~ 97 (326)
T KOG0473|consen 30 LSEIPVREIA--SFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHK 97 (326)
T ss_pred hcccchhhhh--ccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhc
Confidence 3344433333 456788999999999888665 88899999999999999999887 45555555554443
No 80
>KOG3763|consensus
Probab=78.15 E-value=1.1 Score=36.19 Aligned_cols=65 Identities=23% Similarity=0.087 Sum_probs=31.5
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCC--cCeecCcccccCCCcCcEEeCCCCCCCc
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDC--NITDIDPDAFSGLGILIELDLTKNRIHT 129 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n--~l~~i~~~~f~~l~~L~~L~L~~N~l~~ 129 (152)
+.+..+.+++ |++..+..-.--....++|+.|+|++| .+..-..-.--+...|+.|-+.+|++.+
T Consensus 218 p~i~sl~lsn-NrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSN-NRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeeccc-chhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3455566666 666655432110002456777777776 3332111111122345666667776653
No 81
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=75.87 E-value=6.9 Score=20.06 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=18.7
Q ss_pred CCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEcc
Q psy17693 60 RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLK 99 (152)
Q Consensus 60 ~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~ 99 (152)
..+|.+++.|.+.. +--..+..+.+. .+++.|.+.
T Consensus 8 ~~iP~~l~~L~~g~-~fn~~i~~~~lP----~sl~~L~fg 42 (44)
T PF05725_consen 8 GSIPSSLKSLIFGS-SFNQPIEPGSLP----NSLKSLSFG 42 (44)
T ss_pred CeeCCCCeEEEECC-ccCccCCCCccC----CCceEEEee
Confidence 34667777777744 333344444443 345555543
No 82
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=71.10 E-value=2.6 Score=31.42 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=5.7
Q ss_pred CcEEEEecCCCcc
Q psy17693 65 DVQYLDLGKCNVI 77 (152)
Q Consensus 65 ~l~~L~l~~~n~i 77 (152)
.++.+++++ |.|
T Consensus 31 ~~~evdLSG-Nti 42 (388)
T COG5238 31 ELVEVDLSG-NTI 42 (388)
T ss_pred ceeEEeccC-Ccc
Confidence 344455555 444
No 83
>KOG2120|consensus
Probab=70.74 E-value=0.12 Score=38.64 Aligned_cols=58 Identities=16% Similarity=0.116 Sum_probs=26.2
Q ss_pred CCcccEEEccCCcCeecCcccccCCCcCcEEeCCCC-CCCccCc-chhccCccCcEEEee
Q psy17693 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN-RIHTLHP-DACGLCRSMLFFYFR 147 (152)
Q Consensus 90 l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~L~~L~L~ 147 (152)
+.+|+.|.+.++.+..--........+|+.++++.. .++.-.. -.|.+++.|.+|+++
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNls 268 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLS 268 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCch
Confidence 344555555555544322233344445555555542 2433221 134455555555543
No 84
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=63.97 E-value=3.8 Score=39.23 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=20.4
Q ss_pred EccCCcCeecCcccccCCCcCcEEeCCCCCCC
Q psy17693 97 LLKDCNITDIDPDAFSGLGILIELDLTKNRIH 128 (152)
Q Consensus 97 ~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~ 128 (152)
+|++|+|+.|+++.|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 35666666666666666666666666666653
No 85
>KOG3763|consensus
Probab=61.46 E-value=4.4 Score=32.86 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=37.4
Q ss_pred CCCcccEEEccCCcCeecCccccc----CCCcCcEEeCCCC--CCCccC-cchhccCccCcEEEeecC
Q psy17693 89 GLVNLHNLLLKDCNITDIDPDAFS----GLGILIELDLTKN--RIHTLH-PDACGLCRSMLFFYFRES 149 (152)
Q Consensus 89 ~l~~L~~L~l~~n~l~~i~~~~f~----~l~~L~~L~L~~N--~l~~l~-~~~~~~l~~L~~L~L~~~ 149 (152)
+.+.+..+.+++|++..++. ++ ..++|..|+|++| .+.... -+-+++++ |++|-+.++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~--~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~-Leel~l~GN 280 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDA--LSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLP-LEELVLEGN 280 (585)
T ss_pred CCcceeeeecccchhhchhh--hhHHHHhcchhheeecccchhhhcchhhhhhhcCCC-HHHeeecCC
Confidence 46778888899998887643 33 3478899999998 444322 13344443 666666543
No 86
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=55.68 E-value=3.4 Score=30.85 Aligned_cols=59 Identities=22% Similarity=0.126 Sum_probs=25.8
Q ss_pred eEEecCCCCCCCCCCCC-------CCcEEEEecCCCccccc--CCCccccc-CCCcccEEEccCCcCeec
Q psy17693 47 GAACNNTGLSAIPRGLS-------KDVQYLDLGKCNVIFCF--PADAFRST-GLVNLHNLLLKDCNITDI 106 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~~-------~~l~~L~l~~~n~i~~i--~~~~f~~~-~l~~L~~L~l~~n~l~~i 106 (152)
++.|..+++.+-|.... .+++.+.+.. |.|+.- ..-.|.++ ...+|+.|++++|.++..
T Consensus 161 ~vicgrNRlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~ 229 (388)
T COG5238 161 VVICGRNRLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE 229 (388)
T ss_pred EEEeccchhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccchhhh
Confidence 45555555554443111 3455555555 555421 11111100 134555666666555443
No 87
>KOG2120|consensus
Probab=50.15 E-value=1.6 Score=32.95 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=44.0
Q ss_pred cccEEEccCCcCeecC-cccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecCCC
Q psy17693 92 NLHNLLLKDCNITDID-PDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRESTK 151 (152)
Q Consensus 92 ~L~~L~l~~n~l~~i~-~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~~~ 151 (152)
.++.+|+++..|+.-. ..-...+.+|+.|.+.++++..---.....-.+|+.|++++++-
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG 246 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG 246 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc
Confidence 4888888887766321 12345678899999999988865455677788899999988753
No 88
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=35.14 E-value=30 Score=18.12 Aligned_cols=9 Identities=44% Similarity=1.132 Sum_probs=7.2
Q ss_pred CCCCCceee
Q psy17693 32 DCEHLCKCK 40 (152)
Q Consensus 32 ~cp~~C~C~ 40 (152)
-||..|-|.
T Consensus 26 cCp~~ccCY 34 (49)
T PF05624_consen 26 CCPHTCCCY 34 (49)
T ss_pred cCccceeEE
Confidence 689888776
No 89
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=28.42 E-value=42 Score=22.89 Aligned_cols=21 Identities=38% Similarity=1.059 Sum_probs=10.8
Q ss_pred CCCCCCceeeecCCcceEEecCCCCCCCCCC
Q psy17693 31 GDCEHLCKCKWTNGRKGAACNNTGLSAIPRG 61 (152)
Q Consensus 31 ~~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~ 61 (152)
.+||+ |.|. |+...+-.||.+
T Consensus 42 ~sCpp-C~CD---------Cs~~~ll~ip~g 62 (176)
T PF06364_consen 42 SSCPP-CDCD---------CSSQPLLSIPPG 62 (176)
T ss_pred CCCCC-CCCC---------CCCHHHHHhccc
Confidence 37873 5543 444445556644
No 90
>TIGR02167 Liste_lipo_26 bacterial surface protein 26-residue repeat. This model describes a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, L. innocua, Enterococcus faecalis, Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=27.66 E-value=26 Score=15.79 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=5.0
Q ss_pred ccCccCcEEEee
Q psy17693 136 GLCRSMLFFYFR 147 (152)
Q Consensus 136 ~~l~~L~~L~L~ 147 (152)
.++.++..|+++
T Consensus 3 ~~~~~~~~ldls 14 (26)
T TIGR02167 3 SGCSSLTSLDVS 14 (26)
T ss_pred Cccccccccccc
Confidence 334444444443
No 91
>PF07473 Toxin_11: Spasmodic peptide gm9a; InterPro: IPR010012 This family consists of several spasmodic peptide gm9a sequences. Conotoxin gm9a is a putative 27-residue polypeptide encoded by Conus gloriamaris and is known to be a homologue of the 'spasmodic peptide', tx9a, isolated from the venom of the mollusk-hunting cone shell Conus textile []. Upon injection of this venom component, normal mice are converted into behavioural phenocopies of a well-known mutant, the spasmodic mouse [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1IXT_A.
Probab=27.44 E-value=35 Score=15.70 Aligned_cols=11 Identities=27% Similarity=0.760 Sum_probs=8.2
Q ss_pred CCCCCceeeec
Q psy17693 32 DCEHLCKCKWT 42 (152)
Q Consensus 32 ~cp~~C~C~~~ 42 (152)
.||..|.|...
T Consensus 11 ~CashC~C~~~ 21 (28)
T PF07473_consen 11 KCASHCFCHPE 21 (28)
T ss_dssp -SSSSEEEETT
T ss_pred cCccceEEccc
Confidence 69999999743
No 92
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=26.16 E-value=74 Score=20.67 Aligned_cols=8 Identities=25% Similarity=0.833 Sum_probs=5.0
Q ss_pred CCCCCcee
Q psy17693 32 DCEHLCKC 39 (152)
Q Consensus 32 ~cp~~C~C 39 (152)
-||..|.=
T Consensus 17 CCpsvc~t 24 (143)
T PF01456_consen 17 CCPSVCAT 24 (143)
T ss_pred cCcchhcc
Confidence 37776654
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=25.98 E-value=58 Score=14.22 Aligned_cols=12 Identities=42% Similarity=0.332 Sum_probs=8.6
Q ss_pred CcCcEEeCCCCC
Q psy17693 115 GILIELDLTKNR 126 (152)
Q Consensus 115 ~~L~~L~L~~N~ 126 (152)
++|+.|+|++..
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 567888887763
No 94
>KOG1947|consensus
Probab=23.31 E-value=45 Score=25.89 Aligned_cols=59 Identities=22% Similarity=0.247 Sum_probs=28.3
Q ss_pred CCcccEEEccCCc-CeecCccccc-CCCcCcEEeCCCCC-CCccC-cchhccCccCcEEEeec
Q psy17693 90 LVNLHNLLLKDCN-ITDIDPDAFS-GLGILIELDLTKNR-IHTLH-PDACGLCRSMLFFYFRE 148 (152)
Q Consensus 90 l~~L~~L~l~~n~-l~~i~~~~f~-~l~~L~~L~L~~N~-l~~l~-~~~~~~l~~L~~L~L~~ 148 (152)
..+++.++++... ++.+.-.++. .+++|+.|.+.+.. ++... ......++.|++|+++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~ 304 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG 304 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec
Confidence 4555666666554 4333222222 25566666654443 33222 12234456677776653
Done!