Query psy17693
Match_columns 152
No_of_seqs 189 out of 2024
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 20:34:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17693.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17693hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g39_A Variable lymphocyte rec 99.9 3.2E-23 1.1E-27 140.3 11.9 111 32-149 2-112 (170)
2 2r9u_A Variable lymphocyte rec 99.9 2.2E-22 7.6E-27 136.7 11.9 111 32-149 5-115 (174)
3 2v9t_B SLIT homolog 2 protein 99.9 4.8E-22 1.6E-26 139.6 12.4 111 32-149 4-114 (220)
4 2wfh_A SLIT homolog 2 protein 99.9 5.8E-22 2E-26 136.7 11.2 110 32-149 3-112 (193)
5 1w8a_A SLIT protein; signaling 99.9 3.2E-21 1.1E-25 132.7 11.3 111 32-149 1-112 (192)
6 3zyj_A Leucine-rich repeat-con 99.9 3.2E-21 1.1E-25 147.5 12.3 113 32-149 34-146 (440)
7 4g8a_A TOLL-like receptor 4; l 99.9 3.6E-21 1.2E-25 151.8 11.8 113 32-149 22-134 (635)
8 2v70_A SLIT-2, SLIT homolog 2 99.9 7E-21 2.4E-25 133.7 11.9 111 32-149 4-115 (220)
9 3zyi_A Leucine-rich repeat-con 99.9 5.5E-21 1.9E-25 146.6 12.2 113 32-149 45-157 (452)
10 2o6r_A Variable lymphocyte rec 99.8 1.2E-20 4.2E-25 127.9 11.8 110 33-149 1-110 (177)
11 2o6s_A Variable lymphocyte rec 99.8 3.5E-20 1.2E-24 128.6 11.8 110 33-149 1-110 (208)
12 2xot_A Amphoterin-induced prot 99.8 1.3E-19 4.3E-24 135.6 12.0 112 32-149 11-122 (361)
13 4ay9_X Follicle-stimulating ho 99.8 5.4E-20 1.9E-24 137.0 9.8 110 33-149 2-114 (350)
14 2id5_A Lingo-1, leucine rich r 99.8 2.3E-19 7.9E-24 138.2 11.9 113 32-149 2-114 (477)
15 1ozn_A Reticulon 4 receptor; N 99.8 6.1E-19 2.1E-23 127.7 12.3 114 32-149 1-115 (285)
16 2ifg_A High affinity nerve gro 99.8 2.6E-19 8.8E-24 132.9 10.4 109 33-150 1-114 (347)
17 2xwt_C Thyrotropin receptor; s 99.8 2.5E-19 8.6E-24 126.7 9.3 111 32-149 3-115 (239)
18 3e6j_A Variable lymphocyte rec 99.8 1.1E-18 3.6E-23 123.1 12.1 110 33-149 13-122 (229)
19 3m19_A Variable lymphocyte rec 99.8 7.2E-19 2.5E-23 125.4 10.0 113 32-149 3-117 (251)
20 2z80_A TOLL-like receptor 2, v 99.8 1.5E-18 5.2E-23 129.1 11.1 112 32-149 23-134 (353)
21 3t6q_A CD180 antigen; protein- 99.7 9E-18 3.1E-22 132.5 11.5 113 32-149 3-115 (606)
22 2o6q_A Variable lymphocyte rec 99.7 2.3E-17 8E-22 118.7 11.9 110 35-149 10-119 (270)
23 2z66_A Variable lymphocyte rec 99.7 1.4E-17 4.9E-22 121.5 8.4 108 33-148 1-110 (306)
24 3v47_A TOLL-like receptor 5B a 99.7 4.6E-17 1.6E-21 124.4 10.9 110 32-149 3-113 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 4.6E-17 1.6E-21 127.8 10.0 108 33-149 24-131 (562)
26 2z62_A TOLL-like receptor 4, v 99.7 1.3E-16 4.4E-21 114.9 11.6 109 36-149 2-110 (276)
27 2ft3_A Biglycan; proteoglycan, 99.7 1.5E-16 5.2E-21 117.4 11.8 96 32-134 26-121 (332)
28 3vq2_A TLR4, TOLL-like recepto 99.7 1E-16 3.6E-21 126.4 11.6 108 37-149 7-114 (606)
29 1xku_A Decorin; proteoglycan, 99.7 2.2E-16 7.7E-21 116.3 12.0 106 32-147 24-129 (330)
30 2z63_A TOLL-like receptor 4, v 99.7 3.9E-16 1.3E-20 122.1 11.7 109 36-149 2-110 (570)
31 2wfh_A SLIT homolog 2 protein 99.7 7.3E-16 2.5E-20 106.0 9.7 102 45-149 33-136 (193)
32 2z81_A CD282 antigen, TOLL-lik 99.6 1.5E-15 5E-20 118.5 11.2 99 48-149 10-108 (549)
33 1ziw_A TOLL-like receptor 3; i 99.6 5.2E-16 1.8E-20 124.0 8.5 106 37-149 2-107 (680)
34 2z80_A TOLL-like receptor 2, v 99.6 1.5E-15 5.1E-20 112.9 10.1 115 32-149 29-159 (353)
35 1p9a_G Platelet glycoprotein I 99.6 4E-15 1.4E-19 108.3 10.6 65 36-103 3-67 (290)
36 2v9t_B SLIT homolog 2 protein 99.6 1E-14 3.6E-19 102.1 10.4 101 46-149 35-138 (220)
37 3j0a_A TOLL-like receptor 5; m 99.6 4.4E-15 1.5E-19 121.7 9.5 105 37-149 2-107 (844)
38 1w8a_A SLIT protein; signaling 99.6 1.1E-14 3.9E-19 99.8 9.7 102 45-149 31-136 (192)
39 4g8a_A TOLL-like receptor 4; l 99.6 1E-14 3.4E-19 115.0 10.4 102 45-149 54-158 (635)
40 2v70_A SLIT-2, SLIT homolog 2 99.6 2.4E-14 8.1E-19 100.2 9.7 100 46-148 35-138 (220)
41 2o6r_A Variable lymphocyte rec 99.6 4.4E-14 1.5E-18 95.5 10.7 103 45-150 30-135 (177)
42 1p9a_G Platelet glycoprotein I 99.6 3.6E-14 1.2E-18 103.2 10.9 101 46-149 80-182 (290)
43 2o6s_A Variable lymphocyte rec 99.5 9.6E-14 3.3E-18 96.0 10.7 100 46-148 31-133 (208)
44 3m19_A Variable lymphocyte rec 99.5 1.2E-13 4E-18 98.3 10.9 82 64-148 107-188 (251)
45 2z7x_B TOLL-like receptor 1, v 99.5 3.2E-14 1.1E-18 110.4 7.7 98 46-149 3-100 (520)
46 2xot_A Amphoterin-induced prot 99.5 1.8E-13 6.1E-18 102.2 9.9 101 46-149 42-146 (361)
47 3e6j_A Variable lymphocyte rec 99.5 3.8E-13 1.3E-17 94.6 10.9 100 46-149 43-145 (229)
48 2o6q_A Variable lymphocyte rec 99.5 5E-13 1.7E-17 95.9 10.9 63 65-130 62-124 (270)
49 3rfs_A Internalin B, repeat mo 99.4 9.9E-13 3.4E-17 94.5 10.8 80 65-147 134-213 (272)
50 3zyj_A Leucine-rich repeat-con 99.4 8.6E-13 3E-17 100.8 11.0 101 46-149 188-289 (440)
51 1a9n_A U2A', U2A'; complex (nu 99.4 8E-13 2.7E-17 89.2 8.9 99 46-149 22-123 (176)
52 3rfs_A Internalin B, repeat mo 99.4 1.5E-12 5.3E-17 93.5 10.8 101 46-149 88-191 (272)
53 1ozn_A Reticulon 4 receptor; N 99.4 2.1E-12 7.1E-17 93.2 10.6 100 47-149 133-235 (285)
54 2z81_A CD282 antigen, TOLL-lik 99.4 1.1E-12 3.7E-17 102.4 9.7 116 32-150 3-134 (549)
55 3zyi_A Leucine-rich repeat-con 99.4 1.8E-12 6.2E-17 99.3 10.2 101 46-149 199-300 (452)
56 2z62_A TOLL-like receptor 4, v 99.4 2.2E-12 7.4E-17 92.7 9.9 101 46-149 31-134 (276)
57 3rfe_A Platelet glycoprotein I 99.4 9.9E-13 3.4E-17 85.0 7.0 66 32-104 1-68 (130)
58 1xku_A Decorin; proteoglycan, 99.4 3.1E-12 1.1E-16 94.1 10.1 100 46-149 174-273 (330)
59 3o6n_A APL1; leucine-rich repe 99.4 9.1E-13 3.1E-17 99.0 7.2 100 47-149 49-151 (390)
60 3o6n_A APL1; leucine-rich repe 99.3 5.2E-12 1.8E-16 94.9 10.2 101 46-149 72-175 (390)
61 3v47_A TOLL-like receptor 5B a 99.3 4.3E-12 1.5E-16 96.8 9.7 100 47-149 303-405 (455)
62 2ell_A Acidic leucine-rich nuc 99.3 2.7E-12 9.4E-17 85.8 7.6 82 64-148 71-156 (168)
63 2xwt_C Thyrotropin receptor; s 99.3 2.5E-12 8.4E-17 90.6 7.6 100 45-149 33-140 (239)
64 2id5_A Lingo-1, leucine rich r 99.3 4.8E-12 1.7E-16 97.3 9.8 101 46-149 35-138 (477)
65 2je0_A Acidic leucine-rich nuc 99.3 2.7E-12 9.2E-17 84.2 7.2 98 47-149 21-123 (149)
66 2ft3_A Biglycan; proteoglycan, 99.3 1.5E-12 5.3E-17 95.9 6.4 99 47-149 176-274 (332)
67 3vq2_A TLR4, TOLL-like recepto 99.3 5.4E-12 1.8E-16 99.5 9.8 101 46-149 35-138 (606)
68 3g39_A Variable lymphocyte rec 99.3 4.1E-12 1.4E-16 85.4 7.7 77 67-149 12-88 (170)
69 3t6q_A CD180 antigen; protein- 99.3 7.2E-12 2.5E-16 98.8 9.5 102 45-149 35-139 (606)
70 2z63_A TOLL-like receptor 4, v 99.3 9.3E-12 3.2E-16 97.3 10.0 101 46-149 31-134 (570)
71 3oja_B Anopheles plasmodium-re 99.3 3.3E-12 1.1E-16 101.0 7.3 99 48-149 56-157 (597)
72 1dce_A Protein (RAB geranylger 99.3 8.2E-12 2.8E-16 98.5 9.2 97 46-149 444-543 (567)
73 1a9n_A U2A', U2A'; complex (nu 99.3 3.2E-12 1.1E-16 86.2 5.9 101 45-149 44-150 (176)
74 3oja_B Anopheles plasmodium-re 99.3 1.2E-11 4E-16 97.9 10.0 101 46-149 78-181 (597)
75 1ziw_A TOLL-like receptor 3; i 99.3 2E-11 6.9E-16 97.5 10.7 101 46-149 483-594 (680)
76 2r9u_A Variable lymphocyte rec 99.3 1.1E-11 3.8E-16 83.7 7.9 77 67-149 15-91 (174)
77 2ell_A Acidic leucine-rich nuc 99.3 7.4E-12 2.5E-16 83.7 6.4 100 45-149 26-130 (168)
78 2z66_A Variable lymphocyte rec 99.3 1.8E-11 6.2E-16 89.0 8.8 82 64-148 175-257 (306)
79 2je0_A Acidic leucine-rich nuc 99.3 2.7E-12 9.3E-17 84.2 4.0 100 45-148 44-149 (149)
80 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 4E-11 1.4E-15 94.1 10.9 99 45-149 54-156 (562)
81 4ezg_A Putative uncharacterize 99.2 2.6E-11 8.9E-16 83.1 8.3 96 47-148 48-145 (197)
82 2ifg_A High affinity nerve gro 99.2 2.7E-11 9.3E-16 89.6 8.2 77 68-149 12-90 (347)
83 3sb4_A Hypothetical leucine ri 99.2 3.5E-11 1.2E-15 88.7 8.3 96 46-146 229-328 (329)
84 3g06_A SSPH2 (leucine-rich rep 99.2 1.1E-11 3.8E-16 98.7 5.9 89 32-132 30-118 (622)
85 1ogq_A PGIP-2, polygalacturona 99.2 3E-11 1E-15 88.5 7.4 101 46-149 53-159 (313)
86 4b8c_D Glucose-repressible alc 99.2 1.4E-11 4.9E-16 99.7 5.4 98 46-149 227-326 (727)
87 4fcg_A Uncharacterized protein 99.2 6.2E-11 2.1E-15 87.4 8.3 99 47-149 187-287 (328)
88 3j0a_A TOLL-like receptor 5; m 99.2 1.1E-10 3.8E-15 95.7 10.5 102 46-150 269-373 (844)
89 2z7x_B TOLL-like receptor 1, v 99.1 1E-10 3.5E-15 90.7 8.0 99 45-149 23-125 (520)
90 1dce_A Protein (RAB geranylger 99.1 9.7E-11 3.3E-15 92.4 7.7 97 45-146 465-567 (567)
91 4ezg_A Putative uncharacterize 99.1 2.2E-10 7.5E-15 78.5 8.4 96 47-148 70-168 (197)
92 1xeu_A Internalin C; cellular 99.1 3.1E-10 1.1E-14 81.3 9.5 93 47-148 89-181 (263)
93 3sb4_A Hypothetical leucine ri 99.1 1.8E-10 6E-15 84.9 7.5 81 63-148 225-306 (329)
94 1xeu_A Internalin C; cellular 99.1 3.3E-10 1.1E-14 81.1 8.7 96 46-149 44-160 (263)
95 4ay9_X Follicle-stimulating ho 99.1 2.8E-10 9.7E-15 84.5 8.5 102 45-149 32-138 (350)
96 3o53_A Protein LRIM1, AGAP0063 99.1 1.9E-10 6.5E-15 84.3 7.0 81 64-149 144-224 (317)
97 3cvr_A Invasion plasmid antige 99.1 3.5E-10 1.2E-14 89.3 8.6 90 45-149 61-150 (571)
98 4fcg_A Uncharacterized protein 99.1 6.5E-10 2.2E-14 81.9 9.5 101 46-149 209-311 (328)
99 1h6u_A Internalin H; cell adhe 99.1 5.1E-10 1.8E-14 81.8 8.8 91 47-147 45-137 (308)
100 1ogq_A PGIP-2, polygalacturona 99.1 1.5E-10 5.1E-15 84.8 5.8 100 47-149 80-184 (313)
101 3rgz_A Protein brassinosteroid 99.1 4.5E-10 1.5E-14 91.3 8.3 83 64-149 632-714 (768)
102 1h6u_A Internalin H; cell adhe 99.0 7.4E-10 2.5E-14 81.0 8.6 93 46-148 66-160 (308)
103 3o53_A Protein LRIM1, AGAP0063 99.0 5.3E-10 1.8E-14 81.9 7.8 96 47-149 148-247 (317)
104 1wwl_A Monocyte differentiatio 99.0 2E-10 6.7E-15 84.0 5.2 101 46-149 124-238 (312)
105 3oja_A Leucine-rich immune mol 99.0 4.6E-10 1.6E-14 87.0 7.2 81 64-149 144-224 (487)
106 1h6t_A Internalin B; cell adhe 99.0 1.5E-09 5.2E-14 78.7 9.5 75 65-148 91-165 (291)
107 1h6t_A Internalin B; cell adhe 99.0 1.5E-09 5.1E-14 78.7 8.9 92 47-148 50-143 (291)
108 1wwl_A Monocyte differentiatio 99.0 2.8E-10 9.6E-15 83.2 4.8 81 65-149 96-183 (312)
109 3rgz_A Protein brassinosteroid 99.0 1.1E-09 3.8E-14 88.9 8.4 82 64-148 466-547 (768)
110 1o6v_A Internalin A; bacterial 99.0 1.7E-09 5.7E-14 83.1 8.8 95 46-149 49-144 (466)
111 4fmz_A Internalin; leucine ric 99.0 8E-10 2.7E-14 81.5 6.6 96 47-149 225-321 (347)
112 4eco_A Uncharacterized protein 99.0 2.7E-09 9.2E-14 85.1 9.8 98 46-147 436-544 (636)
113 4eco_A Uncharacterized protein 99.0 2E-09 6.8E-14 85.9 8.9 82 65-149 434-523 (636)
114 4fmz_A Internalin; leucine ric 99.0 2.5E-09 8.5E-14 78.9 8.8 95 46-149 47-142 (347)
115 3cvr_A Invasion plasmid antige 99.0 3.5E-09 1.2E-13 83.6 9.9 89 45-149 82-170 (571)
116 3bz5_A Internalin-J, INLJ; leu 98.9 3.2E-09 1.1E-13 81.7 8.9 90 46-148 45-136 (457)
117 4ecn_A Leucine-rich repeat pro 98.9 4.9E-09 1.7E-13 86.4 10.2 98 47-148 677-785 (876)
118 4b8c_D Glucose-repressible alc 98.9 8.5E-10 2.9E-14 89.3 5.4 80 64-149 224-303 (727)
119 3g06_A SSPH2 (leucine-rich rep 98.9 7.8E-09 2.7E-13 82.4 10.4 90 48-150 206-295 (622)
120 3oja_A Leucine-rich immune mol 98.9 9.8E-10 3.4E-14 85.1 4.6 97 48-149 104-201 (487)
121 1m9s_A Internalin B; cell inva 98.9 7.1E-09 2.4E-13 82.4 9.5 76 64-148 109-184 (605)
122 4ecn_A Leucine-rich repeat pro 98.9 6.3E-09 2.2E-13 85.8 8.6 82 65-149 674-763 (876)
123 1m9s_A Internalin B; cell inva 98.9 8.3E-09 2.8E-13 82.0 8.7 93 47-149 69-163 (605)
124 4glp_A Monocyte differentiatio 98.9 3E-09 1E-13 77.6 5.6 82 65-149 92-179 (310)
125 1jl5_A Outer protein YOPM; leu 98.9 1.6E-08 5.3E-13 77.8 9.8 75 64-149 131-205 (454)
126 1ds9_A Outer arm dynein; leuci 98.9 3.4E-11 1.2E-15 82.6 -4.6 97 46-149 51-150 (198)
127 1jl5_A Outer protein YOPM; leu 98.8 1.9E-08 6.6E-13 77.2 9.5 94 46-148 74-182 (454)
128 3bz5_A Internalin-J, INLJ; leu 98.8 2.5E-08 8.6E-13 76.7 9.8 92 46-149 67-158 (457)
129 4glp_A Monocyte differentiatio 98.8 3.9E-09 1.3E-13 77.0 4.3 82 64-148 145-233 (310)
130 1o6v_A Internalin A; bacterial 98.8 2.3E-08 7.9E-13 76.7 8.2 12 136-147 350-361 (466)
131 1ds9_A Outer arm dynein; leuci 98.7 9.1E-11 3.1E-15 80.5 -6.9 89 53-149 35-125 (198)
132 4fdw_A Leucine rich hypothetic 98.7 8E-08 2.7E-12 72.8 8.4 81 64-149 248-333 (401)
133 3goz_A Leucine-rich repeat-con 98.6 8.5E-09 2.9E-13 76.8 1.8 101 46-149 25-148 (362)
134 4fdw_A Leucine rich hypothetic 98.6 1.7E-07 5.9E-12 71.0 8.1 90 54-149 258-355 (401)
135 2ast_B S-phase kinase-associat 98.6 2.3E-08 7.9E-13 73.3 2.6 100 47-149 74-178 (336)
136 4fs7_A Uncharacterized protein 98.5 2.1E-07 7E-12 70.1 7.2 81 64-150 297-377 (394)
137 4h09_A Hypothetical leucine ri 98.5 2.4E-07 8.1E-12 69.2 7.4 81 65-150 264-344 (379)
138 3goz_A Leucine-rich repeat-con 98.5 2.4E-08 8.2E-13 74.3 1.9 103 46-149 54-177 (362)
139 4gt6_A Cell surface protein; l 98.5 6.9E-07 2.4E-11 67.2 9.0 80 64-149 288-367 (394)
140 2ast_B S-phase kinase-associat 98.4 1.3E-07 4.4E-12 69.3 3.2 97 47-149 51-152 (336)
141 2ca6_A RAN GTPase-activating p 98.3 7.3E-08 2.5E-12 72.1 0.7 82 64-149 216-313 (386)
142 3rw6_A Nuclear RNA export fact 98.3 2.1E-07 7.2E-12 66.9 2.9 79 64-146 170-258 (267)
143 4h09_A Hypothetical leucine ri 98.3 2.6E-06 8.9E-11 63.5 8.6 83 64-151 240-322 (379)
144 3rfe_A Platelet glycoprotein I 98.2 4.3E-06 1.5E-10 53.6 5.9 55 68-128 12-68 (130)
145 3rw6_A Nuclear RNA export fact 98.1 3E-06 1E-10 60.8 4.5 61 89-150 168-231 (267)
146 4gt6_A Cell surface protein; l 98.1 1.9E-05 6.4E-10 59.3 8.4 82 64-151 265-346 (394)
147 1z7x_W Ribonuclease inhibitor; 98.0 2.1E-06 7.3E-11 65.3 2.6 82 65-149 86-180 (461)
148 2ca6_A RAN GTPase-activating p 98.0 2.7E-06 9.4E-11 63.5 3.1 40 90-129 93-136 (386)
149 4fs7_A Uncharacterized protein 97.9 9E-06 3.1E-10 61.0 5.0 70 76-149 58-127 (394)
150 3un9_A NLR family member X1; l 97.9 2.5E-06 8.5E-11 64.0 1.7 17 113-129 209-225 (372)
151 3un9_A NLR family member X1; l 97.9 1.5E-06 5.1E-11 65.2 -0.0 103 46-149 104-221 (372)
152 1z7x_W Ribonuclease inhibitor; 97.9 1.7E-06 5.9E-11 65.8 0.0 60 90-149 340-408 (461)
153 3e4g_A ATP synthase subunit S, 97.8 2.4E-05 8.2E-10 52.7 4.1 91 57-150 52-150 (176)
154 1io0_A Tropomodulin; LRR prote 97.3 2.8E-05 9.5E-10 52.6 -0.2 83 64-149 65-161 (185)
155 1io0_A Tropomodulin; LRR prote 97.1 4.7E-05 1.6E-09 51.4 -0.8 81 64-147 36-129 (185)
156 3ogk_B Coronatine-insensitive 97.1 6.6E-05 2.3E-09 58.8 -0.2 34 113-147 218-251 (592)
157 2lz0_A Uncharacterized protein 97.0 0.0016 5.4E-08 39.6 5.4 49 75-126 6-54 (100)
158 2lz0_A Uncharacterized protein 96.8 0.0013 4.4E-08 40.0 4.0 50 99-149 4-53 (100)
159 2p1m_B Transport inhibitor res 96.8 0.00031 1.1E-08 54.9 0.9 58 90-148 155-220 (594)
160 2p1m_B Transport inhibitor res 96.7 0.00089 3E-08 52.3 3.1 84 64-149 105-194 (594)
161 3ogk_B Coronatine-insensitive 96.7 0.00032 1.1E-08 54.9 0.4 60 90-149 462-523 (592)
162 3e4g_A ATP synthase subunit S, 95.7 0.0085 2.9E-07 40.2 3.5 59 91-149 61-124 (176)
163 2ra8_A Uncharacterized protein 95.4 0.0093 3.2E-07 44.4 3.1 60 90-149 251-317 (362)
164 2ra8_A Uncharacterized protein 95.2 0.0028 9.6E-08 47.3 -0.5 85 64-150 252-341 (362)
165 1pgv_A TMD-1, tropomodulin TMD 95.2 0.0075 2.6E-07 41.2 1.7 37 92-128 71-111 (197)
166 1pgv_A TMD-1, tropomodulin TMD 94.3 0.033 1.1E-06 38.0 3.1 85 64-149 70-167 (197)
167 2hm3_A Nematocyst outer WALL a 33.7 14 0.00049 16.2 0.7 7 32-38 7-13 (31)
168 2lur_A Kalata; beta hairpin, p 33.1 25 0.00084 15.3 1.4 11 32-42 9-20 (29)
169 1eyo_A Conotoxin TVIIA; cystin 24.5 41 0.0014 14.8 1.3 6 32-37 8-13 (30)
170 2ljs_A Trypsin inhibitor 3; be 22.4 26 0.00088 15.5 0.5 10 32-41 16-25 (30)
171 1ag7_A Conotoxin GS; neurotoxi 21.3 45 0.0015 14.9 1.2 6 32-37 8-13 (34)
No 1
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.90 E-value=3.2e-23 Score=140.28 Aligned_cols=111 Identities=24% Similarity=0.434 Sum_probs=105.3
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f 111 (152)
+||..|.|++. .++|++++++.+|..++..++.|++++ |.|+.+++..|. ++++|+.|++++|+++.+++..|
T Consensus 2 ~CP~~C~C~~~----~l~~s~n~l~~ip~~~~~~l~~L~L~~-N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~f 74 (170)
T 3g39_A 2 ACPSQCSCSGT----TVDCSGKSLASVPTGIPTTTQVLYLYD-NQITKLEPGVFD--RLTQLTRLDLDNNQLTVLPAGVF 74 (170)
T ss_dssp CCC-CCEEETT----EEECTTSCCSSCCSCCCTTCSEEECCS-SCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTT
T ss_pred cCcCcCCcCCC----EEEeCCCCcCccCccCCCCCcEEEcCC-CcCCccChhhhc--CcccCCEEECCCCCcCccChhhc
Confidence 69999999854 899999999999999999999999999 999999999998 89999999999999999999999
Q ss_pred cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
.++++|+.|+|++|+|+.++++.|.++++|++|+|+++
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 99999999999999999999999999999999999876
No 2
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.89 E-value=2.2e-22 Score=136.70 Aligned_cols=111 Identities=29% Similarity=0.498 Sum_probs=105.7
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f 111 (152)
+||..|.|.. ..++|++++++++|..++..++.|++++ |.++.+++..|. ++++|+.|++++|+++.+++..|
T Consensus 5 ~CP~~C~C~~----~~l~~~~n~l~~iP~~~~~~L~~L~Ls~-N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~ 77 (174)
T 2r9u_A 5 GCPSQCSCDQ----TLVNCQNIRLASVPAGIPTDKQRLWLNN-NQITKLEPGVFD--HLVNLQQLYFNSNKLTAIPTGVF 77 (174)
T ss_dssp SSCTTSEECS----SEEECCSSCCSSCCSCCCTTCSEEECCS-SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCCEECC----cEEEeCCCCCCccCCCcCCCCcEEEeCC-CCccccCHHHhc--CCcCCCEEECCCCCCCccChhHh
Confidence 7999999974 4899999999999999999999999999 999999999998 89999999999999999999999
Q ss_pred cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
..+++|+.|+|++|+|+.++++.|.++++|++|+|+++
T Consensus 78 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 78 DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence 99999999999999999999999999999999999876
No 3
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.88 E-value=4.8e-22 Score=139.61 Aligned_cols=111 Identities=28% Similarity=0.479 Sum_probs=101.7
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f 111 (152)
.||..|.|.+ ..++|++.+++.+|..++..++.|++++ |.|+.+++..|. ++++|+.|++++|.++.+.+.+|
T Consensus 4 ~CP~~C~C~~----~~v~c~~~~l~~iP~~l~~~l~~L~l~~-n~i~~i~~~~~~--~l~~L~~L~Ls~N~i~~~~~~~~ 76 (220)
T 2v9t_B 4 HCPAACTCSN----NIVDCRGKGLTEIPTNLPETITEIRLEQ-NTIKVIPPGAFS--PYKKLRRIDLSNNQISELAPDAF 76 (220)
T ss_dssp CSCTTSEEET----TEEECTTSCCSSCCSSCCTTCCEEECCS-SCCCEECTTSST--TCTTCCEEECCSSCCCEECTTTT
T ss_pred CCCCCCEECC----CEEEcCCCCcCcCCCccCcCCCEEECCC-CcCCCcCHhHhh--CCCCCCEEECCCCcCCCcCHHHh
Confidence 7999999985 3899999999999999999999999999 999999998898 88999999999999999989899
Q ss_pred cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
.++++|++|+|++|+|+.++++.|.++++|++|+|+++
T Consensus 77 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 114 (220)
T 2v9t_B 77 QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN 114 (220)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCC
Confidence 99999999999999999998888888888888888764
No 4
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.87 E-value=5.8e-22 Score=136.68 Aligned_cols=110 Identities=25% Similarity=0.456 Sum_probs=93.1
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f 111 (152)
.||..|.|.+ ..++|++++++++|..++.+++.|++++ |.++.++ ..|. ++++|+.|++++|.++.+.+.+|
T Consensus 3 ~CP~~C~C~~----~~l~~~~~~l~~ip~~~~~~l~~L~L~~-n~i~~ip-~~~~--~l~~L~~L~Ls~N~i~~i~~~~f 74 (193)
T 2wfh_A 3 RCPTECTCLD----TVVRCSNKGLKVLPKGIPRDVTELYLDG-NQFTLVP-KELS--NYKHLTLIDLSNNRISTLSNQSF 74 (193)
T ss_dssp -CCTTCEEET----TEEECTTSCCSSCCSCCCTTCCEEECCS-SCCCSCC-GGGG--GCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCCEeCC----CEEEcCCCCCCcCCCCCCCCCCEEECCC-CcCchhH-HHhh--cccCCCEEECCCCcCCEeCHhHc
Confidence 7999999984 3899999999999999998999999999 8888877 5676 67888888888888888888888
Q ss_pred cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
.++++|+.|+|++|+|+.++++.|.++++|+.|+|+++
T Consensus 75 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC
Confidence 88888888888888888888888888888888888764
No 5
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.86 E-value=3.2e-21 Score=132.70 Aligned_cols=111 Identities=29% Similarity=0.475 Sum_probs=99.2
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCC-cccccCCCcccEEEccCCcCeecCccc
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPAD-AFRSTGLVNLHNLLLKDCNITDIDPDA 110 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~-~f~~~~l~~L~~L~l~~n~l~~i~~~~ 110 (152)
+||..|.|.+. .++|++++++.+|..++..++.|++++ |.++.+++. .|. .+++|+.|++++|.++.+.+.+
T Consensus 1 ~CP~~C~C~~~----~l~~s~~~l~~ip~~~~~~l~~L~l~~-n~i~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~ 73 (192)
T 1w8a_A 1 DCPAMCHCEGT----TVDCTGRGLKEIPRDIPLHTTELLLND-NELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPNA 73 (192)
T ss_dssp CCCTTSEEETT----EEECTTSCCSSCCSCCCTTCSEEECCS-CCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTTT
T ss_pred CcCCCCEECCC----EEEcCCCCcCcCccCCCCCCCEEECCC-CcCCccCCccccc--cCCCCCEEECCCCCCCCcCHhH
Confidence 49999999863 899999999999999999999999999 999988875 477 7889999999999999998888
Q ss_pred ccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 111 FSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 111 f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
|.++++|+.|+|++|+|+.+++..|.++++|++|+|+++
T Consensus 74 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS
T ss_pred cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 999999999999999999998888888999999988765
No 6
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=3.2e-21 Score=147.49 Aligned_cols=113 Identities=27% Similarity=0.477 Sum_probs=104.2
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f 111 (152)
.||..|.|... ...++|.+.+++++|..++.+++.|++++ |.++.+++..|. ++++|+.|++++|.++.+.+.+|
T Consensus 34 ~Cp~~C~C~~~--~~~v~c~~~~l~~iP~~~~~~l~~L~L~~-n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~~ 108 (440)
T 3zyj_A 34 TCPSVCSCSNQ--FSKVICVRKNLREVPDGISTNTRLLNLHE-NQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEIGAF 108 (440)
T ss_dssp CCCSSSEECTT--SCEEECCSCCCSSCCSCCCTTCSEEECCS-CCCCEECTTTTS--SCSSCCEEECCSSCCCEECGGGG
T ss_pred cCCCCCEeCCC--CCEEEeCCCCcCcCCCCCCCCCcEEEccC-CcCCeeCHHHhh--CCCCCCEEECCCCcCCccChhhc
Confidence 89999999743 35899999999999999999999999999 999999999998 89999999999999999999999
Q ss_pred cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
.++++|+.|+|++|+++.++++.|.++++|++|+++++
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp TTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred cCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence 99999999999999999999888999999999998865
No 7
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=3.6e-21 Score=151.76 Aligned_cols=113 Identities=25% Similarity=0.259 Sum_probs=103.0
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f 111 (152)
.|...|.|... ...++|++.++++||.++|.++++|++++ |.|+.+++.+|. ++++|+.|++++|.|+.+++++|
T Consensus 22 ~~~~~c~~~~~--~~~~~c~~~~l~~vP~~lp~~~~~LdLs~-N~i~~l~~~~f~--~l~~L~~L~Ls~N~i~~i~~~~f 96 (635)
T 4g8a_A 22 ESWEPCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSF-NPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAY 96 (635)
T ss_dssp ---CCSEEEET--TTEEECTTSCCSSCCSSSCTTCCEEECTT-SCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTT
T ss_pred CCCCCccccCC--CCEEECCCCCcCccCCCCCcCCCEEEeeC-CCCCCCCHHHHh--CCCCCCEEECCCCcCCCcChhHh
Confidence 34456888754 35799999999999999999999999999 999999999999 89999999999999999999999
Q ss_pred cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
.++++|++|+|++|+|+.+++++|.++++|++|+++++
T Consensus 97 ~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 97 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134 (635)
T ss_dssp TTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred cCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence 99999999999999999999999999999999999875
No 8
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=7e-21 Score=133.65 Aligned_cols=111 Identities=26% Similarity=0.441 Sum_probs=95.5
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccC-CCcccccCCCcccEEEccCCcCeecCccc
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFP-ADAFRSTGLVNLHNLLLKDCNITDIDPDA 110 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~-~~~f~~~~l~~L~~L~l~~n~l~~i~~~~ 110 (152)
.||..|.|.+. .++|++++++.+|..++..++.|++++ |.++.++ ...|. .+++|+.|++++|.++.+.+.+
T Consensus 4 ~CP~~C~C~~~----~l~~s~n~l~~iP~~~~~~~~~L~L~~-N~l~~~~~~~~~~--~l~~L~~L~L~~N~i~~i~~~~ 76 (220)
T 2v70_A 4 ACPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNN-NEFTVLEATGIFK--KLPQLRKINFSNNKITDIEEGA 76 (220)
T ss_dssp CCCTTCEEETT----EEECCSSCCSSCCSCCCTTCSEEECCS-SCCCEECCCCCGG--GCTTCCEEECCSSCCCEECTTT
T ss_pred CCCCCCEECCC----EeEeCCCCcccCccCCCCCCCEEEcCC-CcCCccCchhhhc--cCCCCCEEECCCCcCCEECHHH
Confidence 79999999864 899999999999999998889999999 9998884 45677 7888888888888888888888
Q ss_pred ccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 111 FSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 111 f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
|.++++|+.|+|++|+++.++++.|.++++|++|+|+++
T Consensus 77 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC
Confidence 888888888888888888888888888888888888764
No 9
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=5.5e-21 Score=146.65 Aligned_cols=113 Identities=30% Similarity=0.543 Sum_probs=104.0
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f 111 (152)
.||..|.|... ...++|++.+++.+|..++.+++.|++++ |.++.+++..|. ++++|+.|++++|.++.+.+.+|
T Consensus 45 ~Cp~~C~C~~~--~~~v~c~~~~l~~iP~~~~~~l~~L~L~~-n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~ 119 (452)
T 3zyi_A 45 NCPSVCSCSNQ--FSKVVCTRRGLSEVPQGIPSNTRYLNLME-NNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGAF 119 (452)
T ss_dssp CCCTTSEECSS--SCEEECCSSCCSSCCSCCCTTCSEEECCS-SCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTT
T ss_pred CCCCCCEECCC--CcEEEECCCCcCccCCCCCCCccEEECcC-CcCceECHHHcC--CCCCCCEEECCCCccCCcChhhc
Confidence 79999999743 35899999999999999999999999999 999999999998 89999999999999999999999
Q ss_pred cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
.++++|++|+|++|+++.++++.|.++++|++|+|+++
T Consensus 120 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp TTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred cCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence 99999999999999999999988999999999998865
No 10
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.85 E-value=1.2e-20 Score=127.93 Aligned_cols=110 Identities=25% Similarity=0.449 Sum_probs=98.8
Q ss_pred CCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCccccc
Q psy17693 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS 112 (152)
Q Consensus 33 cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~ 112 (152)
||..|.|.+. .++|++.+++.+|..+++.++.|++++ |.++.+++..|. .+++|+.|++++|.++.+++..|.
T Consensus 1 Cp~~C~C~~~----~l~~~~~~l~~~p~~~~~~l~~L~l~~-n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~ 73 (177)
T 2o6r_A 1 CPSRCSCSGT----EIRCNSKGLTSVPTGIPSSATRLELES-NKLQSLPHGVFD--KLTQLTKLSLSQNQIQSLPDGVFD 73 (177)
T ss_dssp CCTTCEEETT----EEECCSSCCSSCCTTCCTTCSEEECCS-SCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CcCCCEeCCC----EEEecCCCCccCCCCCCCCCcEEEeCC-CcccEeCHHHhc--CcccccEEECCCCcceEeChhHcc
Confidence 8999999864 899999999999998999999999999 999999888887 788999999999999998888888
Q ss_pred CCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 113 GLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 113 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
.+++|+.|++++|+++.++++.|.++++|++|+++++
T Consensus 74 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence 8999999999999999888888888888888888765
No 11
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=3.5e-20 Score=128.65 Aligned_cols=110 Identities=24% Similarity=0.469 Sum_probs=98.0
Q ss_pred CCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCccccc
Q psy17693 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS 112 (152)
Q Consensus 33 cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~ 112 (152)
||..|.|.+. .++|++.+++.+|..+++++++|++++ |.++.+++..|. ++++|+.|++++|.++.+++..|.
T Consensus 1 Cp~~C~C~~~----~v~c~~~~l~~~p~~~~~~l~~L~l~~-n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~ 73 (208)
T 2o6s_A 1 CPSRCSCSGT----TVECYSQGRTSVPTGIPAQTTYLDLET-NSLKSLPNGVFD--ELTSLTQLYLGGNKLQSLPNGVFN 73 (208)
T ss_dssp CCTTCEEETT----EEECCSSCCSSCCSCCCTTCSEEECCS-SCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CcCCCEECCC----EEEecCCCccCCCCCCCCCCcEEEcCC-CccCcCChhhhc--ccccCcEEECCCCccCccChhhcC
Confidence 8999999865 899999999999999999999999999 999999888887 788899999999999888888888
Q ss_pred CCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 113 GLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 113 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
.+++|++|++++|+++.+++..|.++++|++|+++++
T Consensus 74 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence 8888999999888888888888888888888888765
No 12
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=1.3e-19 Score=135.63 Aligned_cols=112 Identities=27% Similarity=0.399 Sum_probs=94.0
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f 111 (152)
.||..|.|.. ..++|++.+++.+|..++..++.|++++ |.++.+++..|.. ++++|+.|++++|.++.+.+.+|
T Consensus 11 ~Cp~~C~C~~----~~l~c~~~~l~~iP~~~~~~l~~L~Ls~-N~l~~l~~~~~~~-~l~~L~~L~L~~N~i~~i~~~~~ 84 (361)
T 2xot_A 11 SCPANCLCAS----NILSCSKQQLPNVPQSLPSYTALLDLSH-NNLSRLRAEWTPT-RLTNLHSLLLSHNHLNFISSEAF 84 (361)
T ss_dssp TCCTTCEEET----TEEECCSSCCSSCCSSCCTTCSEEECCS-SCCCEECTTSSSS-CCTTCCEEECCSSCCCEECTTTT
T ss_pred CCCCCCEECC----CEEEeCCCCcCccCccCCCCCCEEECCC-CCCCccChhhhhh-cccccCEEECCCCcCCccChhhc
Confidence 7999999984 4899999999999999999999999999 9999888877731 36788888888888888888888
Q ss_pred cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
.++++|+.|+|++|+|+.++++.|.++++|++|+|+++
T Consensus 85 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC
Confidence 88888888888888888888777888888888887754
No 13
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=5.4e-20 Score=137.05 Aligned_cols=110 Identities=21% Similarity=0.405 Sum_probs=100.6
Q ss_pred CCCC-ceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcC-eecCccc
Q psy17693 33 CEHL-CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNI-TDIDPDA 110 (152)
Q Consensus 33 cp~~-C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l-~~i~~~~ 110 (152)
||+. |.|.+ ++|+|++.++++||..+|.++++|++++ |.|+.|++++|. ++++|+.|++++|.+ +.+++++
T Consensus 2 Cp~~~C~C~~----~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~-N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~ 74 (350)
T 4ay9_X 2 CHHRICHCSN----RVFLCQESKVTEIPSDLPRNAIELRFVL-TKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADV 74 (350)
T ss_dssp CCCSSSEEET----TEEEEESTTCCSCCTTCCTTCSEEEEES-CCCSEECTTSST--TCTTCCEEEEECCTTCCEECTTS
T ss_pred CCCCccEeeC----CEEEecCCCCCccCcCcCCCCCEEEccC-CcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChhH
Confidence 9876 99985 3899999999999999999999999999 999999999999 899999999999987 6688899
Q ss_pred ccCCCcCcE-EeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 111 FSGLGILIE-LDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 111 f~~l~~L~~-L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
|.+++++.. +.++.|+++.+++++|.++++|++|+++++
T Consensus 75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n 114 (350)
T 4ay9_X 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114 (350)
T ss_dssp BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE
T ss_pred hhcchhhhhhhcccCCcccccCchhhhhcccccccccccc
Confidence 999998776 567789999999999999999999999864
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=138.16 Aligned_cols=113 Identities=26% Similarity=0.468 Sum_probs=104.2
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f 111 (152)
.||..|.|... ...++|++.+++.+|..++..++.|++++ |.++.+++..|. ++++|+.|++++|.++.+.+.+|
T Consensus 2 ~Cp~~C~C~~~--~~~v~c~~~~l~~ip~~~~~~l~~L~L~~-n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~ 76 (477)
T 2id5_A 2 GCPPRCECSAQ--DRAVLCHRKRFVAVPEGIPTETRLLDLGK-NRIKTLNQDEFA--SFPHLEELELNENIVSAVEPGAF 76 (477)
T ss_dssp CCSTTCEEETT--TTEEECCSCCCSSCCSCCCTTCSEEECCS-SCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTT
T ss_pred cccCCCeECCC--CCEEEeCCCCcCcCCCCCCCCCcEEECCC-CccceECHhHcc--CCCCCCEEECCCCccCEeChhhh
Confidence 69999999743 35899999999999999999999999999 999999999998 89999999999999999999999
Q ss_pred cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
.++++|++|+|++|+++.++++.|.++++|++|+++++
T Consensus 77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 114 (477)
T 2id5_A 77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114 (477)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS
T ss_pred hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC
Confidence 99999999999999999999888999999999998765
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=6.1e-19 Score=127.66 Aligned_cols=114 Identities=29% Similarity=0.469 Sum_probs=100.1
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f 111 (152)
+||..|.|.... ...++|++.+++.+|..+++.++.|++++ |.++.+++..|. .+++|+.|++++|.++.+.+.+|
T Consensus 1 ~CP~~C~C~~~~-~~~~~c~~~~l~~ip~~~~~~l~~L~l~~-n~i~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~ 76 (285)
T 1ozn_A 1 PCPGACVCYNEP-KVTTSCPQQGLQAVPVGIPAASQRIFLHG-NRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAF 76 (285)
T ss_dssp CCCTTCEEECSS-SCEEECCSSCCSSCCTTCCTTCSEEECTT-SCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTT
T ss_pred CcCCCceECCCC-CeEEEcCcCCcccCCcCCCCCceEEEeeC-CcCCccCHHHcc--cCCCCCEEECCCCccceeCHhhc
Confidence 599999997542 35899999999999999999999999999 999999988888 78899999999999999888888
Q ss_pred cCCCcCcEEeCCCCC-CCccCcchhccCccCcEEEeecC
Q psy17693 112 SGLGILIELDLTKNR-IHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 112 ~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
.++++|+.|++++|+ ++.+++..|.++++|++|+++++
T Consensus 77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n 115 (285)
T 1ozn_A 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115 (285)
T ss_dssp TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC
Confidence 888999999999887 88888888888888888888764
No 16
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.80 E-value=2.6e-19 Score=132.91 Aligned_cols=109 Identities=20% Similarity=0.317 Sum_probs=100.8
Q ss_pred CCCCc-eeeecCCcceEEecCC-CCCCCCCCCC--CCcEEEEec-CCCcccccCCCcccccCCCcccEEEccCCcCeecC
Q psy17693 33 CEHLC-KCKWTNGRKGAACNNT-GLSAIPRGLS--KDVQYLDLG-KCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107 (152)
Q Consensus 33 cp~~C-~C~~~~~~~~~~c~~~-~l~~iP~~~~--~~l~~L~l~-~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~ 107 (152)
||..| .|.+. .++|++. +++.+|. ++ .+++.|+++ . |.++.+++..|. ++++|+.|++++|.++.+.
T Consensus 1 cp~~c~~C~~~----~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~-n~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~ 72 (347)
T 2ifg_A 1 CPDACCPHGSS----GLRCTRDGALDSLHH-LPGAENLTELYIENQ-QHLQHLELRDLR--GLGELRNLTIVKSGLRFVA 72 (347)
T ss_dssp CCSSSCCSSSS----CEECCSSCCCTTTTT-SCSCSCCSEEECCSC-SSCCEECGGGSC--SCCCCSEEECCSSCCCEEC
T ss_pred CCCcCccccCC----EEEcCCCCCCCccCC-CCCCCCeeEEEccCC-CCCCCcChhHhc--cccCCCEEECCCCccceeC
Confidence 89999 99753 7999998 9999998 87 569999998 7 999999999999 8999999999999999999
Q ss_pred cccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecCC
Q psy17693 108 PDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFREST 150 (152)
Q Consensus 108 ~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~~ 150 (152)
+.+|.++++|+.|+|++|+|+.++++.|..+. |+.|+|.++.
T Consensus 73 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 73 PDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp TTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred HHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCC
Confidence 99999999999999999999999999998887 9999998753
No 17
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=2.5e-19 Score=126.73 Aligned_cols=111 Identities=18% Similarity=0.349 Sum_probs=101.8
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCc-CeecCccc
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCN-ITDIDPDA 110 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~-l~~i~~~~ 110 (152)
.||..|.|... ....|+|.+ ++++|. ++..++.|++++ |.++.+++..|. ++++|+.|++++|. ++.+++.+
T Consensus 3 ~cp~~C~C~~~-~~~~v~c~~--l~~ip~-~~~~l~~L~l~~-n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~ 75 (239)
T 2xwt_C 3 CSSPPCECHQE-EDFRVTCKD--IQRIPS-LPPSTQTLKLIE-THLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHS 75 (239)
T ss_dssp CCSSSCSEEEC-STTEEEECS--CSSCCC-CCTTCCEEEEES-CCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTT
T ss_pred CCCCCCeeCCC-CcceeEccC--ccccCC-CCCcccEEEEeC-CcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhH
Confidence 79999999861 135788987 899998 999999999999 999999999998 89999999999997 99999999
Q ss_pred ccCCCcCcEEeCCC-CCCCccCcchhccCccCcEEEeecC
Q psy17693 111 FSGLGILIELDLTK-NRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 111 f~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
|.++++|+.|++++ |+++.++++.|.++++|++|+++++
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n 115 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE
T ss_pred cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC
Confidence 99999999999998 9999999999999999999999874
No 18
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.1e-18 Score=123.14 Aligned_cols=110 Identities=24% Similarity=0.404 Sum_probs=101.2
Q ss_pred CCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCccccc
Q psy17693 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS 112 (152)
Q Consensus 33 cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~ 112 (152)
....|.|++. .++|++.+++.+|..++.+++.|++++ |.++.+.+..|. ++++|+.|++++|.++.+++..|.
T Consensus 13 ~~~~~~Cs~~----~v~c~~~~l~~ip~~~~~~L~~L~Ls~-n~i~~~~~~~~~--~l~~L~~L~L~~N~l~~i~~~~~~ 85 (229)
T 3e6j_A 13 CPSQCSCSGT----TVDCRSKRHASVPAGIPTNAQILYLHD-NQITKLEPGVFD--SLINLKELYLGSNQLGALPVGVFD 85 (229)
T ss_dssp CCTTCEEETT----EEECTTSCCSSCCSCCCTTCSEEECCS-SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCEEeCC----EeEccCCCcCccCCCCCCCCCEEEcCC-CccCccCHHHhh--CccCCcEEECCCCCCCCcChhhcc
Confidence 4467889865 799999999999999999999999999 999999999898 899999999999999999999999
Q ss_pred CCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 113 GLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 113 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
.+++|+.|+|++|+|+.++++.|.++++|++|+++++
T Consensus 86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 122 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence 9999999999999999999998999999999998865
No 19
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.78 E-value=7.2e-19 Score=125.35 Aligned_cols=113 Identities=25% Similarity=0.456 Sum_probs=96.8
Q ss_pred CCCCC--ceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcc
Q psy17693 32 DCEHL--CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109 (152)
Q Consensus 32 ~cp~~--C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~ 109 (152)
+||.. |.|... .+.++|++.+++.+|..++..++.|++++ |.+..+++..|. ++++|+.|++++|.++.+.+.
T Consensus 3 ~Cp~~~gC~C~~~--~~~l~~~~~~l~~~p~~~~~~l~~L~L~~-n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~ 77 (251)
T 3m19_A 3 TCETVTGCTCNEG--KKEVDCQGKSLDSVPSGIPADTEKLDLQS-TGLATLSDATFR--GLTKLTWLNLDYNQLQTLSAG 77 (251)
T ss_dssp -CHHHHSSEEEGG--GTEEECTTCCCSSCCSCCCTTCCEEECTT-SCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTT
T ss_pred cCCCCCceEcCCC--CeEEecCCCCccccCCCCCCCCCEEEccC-CCcCccCHhHhc--CcccCCEEECCCCcCCccCHh
Confidence 68877 999632 45899999999999999999999999999 999999888888 788899999999988888888
Q ss_pred cccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 110 AFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 110 ~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+|..+++|+.|++++|+++.++++.|.++++|++|+++++
T Consensus 78 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence 8888888888888888888888888888888888888764
No 20
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=129.11 Aligned_cols=112 Identities=29% Similarity=0.402 Sum_probs=98.3
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f 111 (152)
.|+..|.|.+. ..++|++.+++.+|..+++.+++|++++ |.++.+++..|. ++++|+.|++++|.++.+.+.+|
T Consensus 23 ~~~~~~~C~~~---~~c~~~~~~l~~iP~~~~~~L~~L~l~~-n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~ 96 (353)
T 2z80_A 23 SNQASLSCDRN---GICKGSSGSLNSIPSGLTEAVKSLDLSN-NRITYISNSDLQ--RCVNLQALVLTSNGINTIEEDSF 96 (353)
T ss_dssp ----CCEECTT---SEEECCSTTCSSCCTTCCTTCCEEECTT-SCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTT
T ss_pred CCccCCCCCCC---eEeeCCCCCcccccccccccCcEEECCC-CcCcccCHHHhc--cCCCCCEEECCCCccCccCHhhc
Confidence 47777888764 3689999999999999999999999999 999999998888 89999999999999999999899
Q ss_pred cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
.++++|++|++++|+++.++++.|.++++|++|+++++
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134 (353)
T ss_dssp TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC
T ss_pred CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC
Confidence 99999999999999999998888899999999999765
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.75 E-value=9e-18 Score=132.52 Aligned_cols=113 Identities=27% Similarity=0.378 Sum_probs=102.7
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f 111 (152)
.|+..|.|... ...++|++.+++++|..+|..++.|++++ |.++.+++.+|. ++++|+.|++++|.++.+.+.+|
T Consensus 3 ~~~~~C~~~~~--~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~-n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~ 77 (606)
T 3t6q_A 3 SSDQKCIEKEV--NKTYNCENLGLNEIPGTLPNSTECLEFSF-NVLPTIQNTTFS--RLINLTFLDLTRCQIYWIHEDTF 77 (606)
T ss_dssp ---CCCEEEET--TTEEECTTSCCSSCCTTSCTTCCEEECTT-CCCSEECTTTST--TCTTCSEEECTTCCCCEECTTTT
T ss_pred cccCceecccC--CceEECCCCCcccCcCCCCCcCcEEEccC-CccCcCChhHhc--cCccceEEECCCCccceeChhhc
Confidence 58889999754 45899999999999999999999999999 999999999999 89999999999999999999999
Q ss_pred cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
.++++|++|++++|+++.+++..|.++++|++|+++++
T Consensus 78 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 115 (606)
T 3t6q_A 78 QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115 (606)
T ss_dssp TTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS
T ss_pred cCccccCeeeCCCCcccccChhhhcccccccEeecccc
Confidence 99999999999999999999989999999999998865
No 22
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=2.3e-17 Score=118.66 Aligned_cols=110 Identities=25% Similarity=0.426 Sum_probs=96.4
Q ss_pred CCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCC
Q psy17693 35 HLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGL 114 (152)
Q Consensus 35 ~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l 114 (152)
..|.|... ...++|++.+++.+|..++.+++.|++++ |.++.+++.+|. ++++|+.|++++|.++.+++..|..+
T Consensus 10 ~~C~c~~~--~~~l~~~~~~l~~ip~~~~~~l~~L~l~~-n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~i~~~~~~~l 84 (270)
T 2o6q_A 10 GVCSCNNN--KNSVDCSSKKLTAIPSNIPADTKKLDLQS-NKLSSLPSKAFH--RLTKLRLLYLNDNKLQTLPAGIFKEL 84 (270)
T ss_dssp CSBEEETT--TTEEECTTSCCSSCCSCCCTTCSEEECCS-SCCSCCCTTSSS--SCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred CCCEeCCC--CCEEEccCCCCCccCCCCCCCCCEEECcC-CCCCeeCHHHhc--CCCCCCEEECCCCccCeeChhhhcCC
Confidence 45889742 45899999999999999999999999999 999999988888 88999999999999999888888888
Q ss_pred CcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 115 GILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 115 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
++|+.|++++|+++.++++.|.++++|++|+++++
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC
Confidence 99999999999988888888888888888888754
No 23
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.72 E-value=1.4e-17 Score=121.48 Aligned_cols=108 Identities=25% Similarity=0.410 Sum_probs=83.3
Q ss_pred CCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecC--ccc
Q psy17693 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID--PDA 110 (152)
Q Consensus 33 cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~--~~~ 110 (152)
||..|.|.+. .++|++.+++++|..++++++.|++++ |.++.++...|. ++++|+.|++++|.++.+. +.+
T Consensus 1 CP~~C~C~~~----~l~c~~~~l~~ip~~~~~~l~~L~L~~-n~l~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~ 73 (306)
T 2z66_A 1 CPSRCSCSGT----EIRCNSKGLTSVPTGIPSSATRLELES-NKLQSLPHGVFD--KLTQLTKLSLSSNGLSFKGCCSQS 73 (306)
T ss_dssp CCTTCEEETT----EEECCSSCCSSCCSCCCTTCCEEECCS-SCCCCCCTTTTT--TCTTCSEEECCSSCCCEEEEEEHH
T ss_pred CcCCCeeCCC----EEEcCCCCcccCCCCCCCCCCEEECCC-CccCccCHhHhh--ccccCCEEECCCCccCcccCcccc
Confidence 8999999864 899999999999999999999999999 999999998888 7899999999999887653 334
Q ss_pred ccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeec
Q psy17693 111 FSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRE 148 (152)
Q Consensus 111 f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 148 (152)
+.++++|+.|++++|+++.++.. |.++++|++|++++
T Consensus 74 ~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~ 110 (306)
T 2z66_A 74 DFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQH 110 (306)
T ss_dssp HHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTT
T ss_pred cccccccCEEECCCCccccChhh-cCCCCCCCEEECCC
Confidence 44556666666666665555433 44455555555543
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=4.6e-17 Score=124.40 Aligned_cols=110 Identities=26% Similarity=0.348 Sum_probs=97.3
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCe-ecCccc
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNIT-DIDPDA 110 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~-~i~~~~ 110 (152)
+||..|.|.. ..++|++.+++.+|. +++.+++|++++ |.++.+.+..|. ++++|+.|++++|.+. .+++.+
T Consensus 3 p~~~~c~~~~----~~~~c~~~~l~~lp~-l~~~l~~L~Ls~-n~i~~~~~~~~~--~l~~L~~L~L~~n~~~~~i~~~~ 74 (455)
T 3v47_A 3 PGTSECSVIG----YNAICINRGLHQVPE-LPAHVNYVDLSL-NSIAELNETSFS--RLQDLQFLKVEQQTPGLVIRNNT 74 (455)
T ss_dssp ----CCEEET----TEEECCSSCCSSCCC-CCTTCCEEECCS-SCCCEECTTTTS--SCTTCCEEECCCCSTTCEECTTT
T ss_pred CccceeEEEc----cccCcCCCCcccCCC-CCCccCEEEecC-CccCcCChhHhc--cCccccEEECcCCcccceECccc
Confidence 6999999974 379999999999997 899999999999 999999888898 8999999999999886 788889
Q ss_pred ccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 111 FSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 111 f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
|.++++|++|++++|+++.+.++.|.++++|++|+++++
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 113 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC 113 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC
Confidence 999999999999999999998888999999999999865
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.71 E-value=4.6e-17 Score=127.84 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=84.8
Q ss_pred CCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCccccc
Q psy17693 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS 112 (152)
Q Consensus 33 cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~ 112 (152)
++..|.|... +.++|++.+++.+|..++++++.|++++ |.+..+++.+|. ++++|+.|++++|.++.+.+.+|.
T Consensus 24 ~~~~~~~~~~---~~l~ls~~~L~~ip~~~~~~L~~L~Ls~-N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~ 97 (562)
T 3a79_B 24 SMTPFSNELE---SMVDYSNRNLTHVPKDLPPRTKALSLSQ-NSISELRMPDIS--FLSELRVLRLSHNRIRSLDFHVFL 97 (562)
T ss_dssp ---------C---CEEECTTSCCCSCCTTSCTTCCEEECCS-SCCCCCCGGGTT--TCTTCCEEECCSCCCCEECTTTTT
T ss_pred cccccccCCC---cEEEcCCCCCccCCCCCCCCcCEEECCC-CCccccChhhhc--cCCCccEEECCCCCCCcCCHHHhC
Confidence 4445666532 5899999999999999999999999999 999999988898 899999999999999999999999
Q ss_pred CCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 113 GLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 113 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
++++|++|++++|+++.++.. .+++|++|+++++
T Consensus 98 ~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N 131 (562)
T 3a79_B 98 FNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFN 131 (562)
T ss_dssp TCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSS
T ss_pred CCCCCCEEECCCCcCCccCcc---ccccCCEEECCCC
Confidence 998888888888888877654 4555556555543
No 26
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=1.3e-16 Score=114.93 Aligned_cols=109 Identities=26% Similarity=0.271 Sum_probs=98.8
Q ss_pred CceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCC
Q psy17693 36 LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG 115 (152)
Q Consensus 36 ~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~ 115 (152)
+|.|... ...++|.+.+++++|+.+|.++++|++++ |.++.+++..|. ++++|+.|++++|.++.+.+.+|..++
T Consensus 2 ~C~~~~~--~~~~~c~~~~l~~ip~~l~~~l~~L~ls~-n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~ 76 (276)
T 2z62_A 2 PCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSF-NPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLS 76 (276)
T ss_dssp CSEEEET--TTEEECTTSCCSSCCSSSCTTCCEEECTT-CCCCEECTTTTT--TCTTCSEEECTTCCCCEECTTTTTTCT
T ss_pred CceeccC--CceEEecCCCccccCCCCCCCccEEECCC-CcccccCHhHhc--cccCCcEEECCCCcCCccCHHHccCCc
Confidence 4777654 35799999999999999999999999999 999999998888 899999999999999999998999999
Q ss_pred cCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 116 ILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 116 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+|++|++++|+++.++++.|.++++|++|+++++
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCCEEECCCCccCccChhhhcCCccccEEECCCC
Confidence 9999999999999999888999999999988764
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.70 E-value=1.5e-16 Score=117.38 Aligned_cols=96 Identities=34% Similarity=0.583 Sum_probs=87.2
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f 111 (152)
.||..|.|... .++|++.+++.+|..+++.++.|++++ |.++.+++..|. ++++|+.|++++|.++.+.+.+|
T Consensus 26 ~cp~~c~c~l~----~l~~~~~~l~~ip~~~~~~l~~L~l~~-n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~ 98 (332)
T 2ft3_A 26 MCPFGCHCHLR----VVQCSDLGLKAVPKEISPDTTLLDLQN-NDISELRKDDFK--GLQHLYALVLVNNKISKIHEKAF 98 (332)
T ss_dssp CCCSSCEEETT----EEECCSSCCSSCCSCCCTTCCEEECCS-SCCCEECTTTTT--TCTTCCEEECCSSCCCEECGGGS
T ss_pred CCCCCCcccCC----EEECCCCCccccCCCCCCCCeEEECCC-CcCCccCHhHhh--CCCCCcEEECCCCccCccCHhHh
Confidence 79999999854 899999999999999999999999999 999999998898 89999999999999999999999
Q ss_pred cCCCcCcEEeCCCCCCCccCcch
Q psy17693 112 SGLGILIELDLTKNRIHTLHPDA 134 (152)
Q Consensus 112 ~~l~~L~~L~L~~N~l~~l~~~~ 134 (152)
..+++|++|++++|+++.++...
T Consensus 99 ~~l~~L~~L~L~~n~l~~l~~~~ 121 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVEIPPNL 121 (332)
T ss_dssp TTCTTCCEEECCSSCCCSCCSSC
T ss_pred hCcCCCCEEECCCCcCCccCccc
Confidence 99999999999888887766544
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.70 E-value=1e-16 Score=126.44 Aligned_cols=108 Identities=25% Similarity=0.343 Sum_probs=99.4
Q ss_pred ceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCc
Q psy17693 37 CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI 116 (152)
Q Consensus 37 C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~ 116 (152)
|.|... ...++|++.+++++|..++..++.|++++ |.++.+++..|. ++++|+.|++++|.++.+.+.+|.++++
T Consensus 7 c~~~~~--~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~-n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~i~~~~~~~l~~ 81 (606)
T 3vq2_A 7 CIEVVP--NITYQCMDQKLSKVPDDIPSSTKNIDLSF-NPLKILKSYSFS--NFSELQWLDLSRCEIETIEDKAWHGLHH 81 (606)
T ss_dssp CEEEET--TTEEECTTSCCSSCCTTSCTTCCEEECTT-SCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred ceecCC--CCceEccCCCcccCCCCCCCCcCEEECCC-CCcCEeChhhcc--CCccCcEEeCCCCcccccCHHHhhchhh
Confidence 777543 35899999999999999999999999999 999999999998 8999999999999999999999999999
Q ss_pred CcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 117 LIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 117 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
|++|++++|+++.++++.|.++++|++|+++++
T Consensus 82 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp CCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS
T ss_pred cCEeECCCCcccccChhhcCCcccCCEEEccCC
Confidence 999999999999998989999999999999865
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.69 E-value=2.2e-16 Score=116.32 Aligned_cols=106 Identities=31% Similarity=0.533 Sum_probs=92.2
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f 111 (152)
.||..|.|... .++|++.+++.+|..+++.++.|++++ |.++.+++..|. ++++|+.|++++|.++.+.+.+|
T Consensus 24 ~cp~~c~c~l~----~l~~~~~~l~~lp~~~~~~l~~L~L~~-n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~ 96 (330)
T 1xku_A 24 VCPFRCQCHLR----VVQCSDLGLEKVPKDLPPDTALLDLQN-NKITEIKDGDFK--NLKNLHTLILINNKISKISPGAF 96 (330)
T ss_dssp CCCTTCEEETT----EEECTTSCCCSCCCSCCTTCCEEECCS-SCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTTT
T ss_pred CCCCCCcCCCe----EEEecCCCccccCccCCCCCeEEECCC-CcCCEeChhhhc--cCCCCCEEECCCCcCCeeCHHHh
Confidence 79999999854 899999999999999999999999999 999999998898 89999999999999999999999
Q ss_pred cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEee
Q psy17693 112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFR 147 (152)
Q Consensus 112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 147 (152)
..+++|++|++++|+++.++...+ ++|++|+++
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~ 129 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKELPEKMP---KTLQELRVH 129 (330)
T ss_dssp TTCTTCCEEECCSSCCSBCCSSCC---TTCCEEECC
T ss_pred cCCCCCCEEECCCCcCCccChhhc---ccccEEECC
Confidence 999999999999998887765543 344444443
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.67 E-value=3.9e-16 Score=122.11 Aligned_cols=109 Identities=26% Similarity=0.271 Sum_probs=99.3
Q ss_pred CceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCC
Q psy17693 36 LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG 115 (152)
Q Consensus 36 ~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~ 115 (152)
.|.|... ...++|++.+++++|..+|..++.|++++ |.++.+++.+|. ++++|+.|++++|.++.+++.+|.+++
T Consensus 2 ~c~~~~~--~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~-n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~~~~l~ 76 (570)
T 2z63_A 2 PCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSF-NPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLS 76 (570)
T ss_dssp CSEEEET--TTEEECCSSCCSSCCSSSCSSCCEEECCS-CCCCEECTTTTT--TCSSCCEEECTTCCCCEECTTTTTTCT
T ss_pred CccccCC--CcEEEeCCCCccccCCCccccccEEEccC-CccCccChhHhh--CCCCceEEECCCCcCCccCcccccCch
Confidence 5777654 35799999999999999999999999999 999999999998 899999999999999999999999999
Q ss_pred cCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 116 ILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 116 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+|++|++++|+++.++++.|.++++|++|+++++
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 110 (570)
T 2z63_A 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (570)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred hCCEEeCcCCcCCccCHhhhcCcccccccccccc
Confidence 9999999999999999888999999999988765
No 31
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=7.3e-16 Score=106.02 Aligned_cols=102 Identities=23% Similarity=0.322 Sum_probs=95.1
Q ss_pred cceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693 45 RKGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL 122 (152)
Q Consensus 45 ~~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L 122 (152)
.+.++.+++.++.+|..+. ..++.|++++ |.|+.+++..|. ++++|+.|++++|.++.+++.+|.++++|+.|+|
T Consensus 33 l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~--~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFS--NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp CCEEECCSSCCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTT--TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCcCchhHHHhhcccCCCEEECCC-CcCCEeCHhHcc--CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 4578899999999986554 7899999999 999999999999 8999999999999999999999999999999999
Q ss_pred CCCCCCccCcchhccCccCcEEEeecC
Q psy17693 123 TKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
++|+|+.++++.|.++++|+.|+++++
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCC
Confidence 999999999999999999999999875
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.64 E-value=1.5e-15 Score=118.53 Aligned_cols=99 Identities=30% Similarity=0.456 Sum_probs=91.1
Q ss_pred EEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCC
Q psy17693 48 AACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127 (152)
Q Consensus 48 ~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l 127 (152)
++|++++++++|+.+++.+++|++++ |.++.+++..|. ++++|+.|++++|.++.+.+.+|.++++|++|++++|++
T Consensus 10 c~~~~~~l~~ip~~~~~~L~~L~Ls~-n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLTAAMKSLDLSF-NKITYIGHGDLR--ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCSSCCSCCCTTCCEEECCS-SCCCEECSSTTS--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccccccccCCCCccEEECcC-CccCccChhhhh--cCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 35678899999999999999999999 999999988898 899999999999999999999999999999999999999
Q ss_pred CccCcchhccCccCcEEEeecC
Q psy17693 128 HTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 128 ~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+.++++.|.++++|++|+++++
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTC
T ss_pred CccCHHHhccCCCCcEEECCCC
Confidence 9999988999999999999865
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.63 E-value=5.2e-16 Score=123.99 Aligned_cols=106 Identities=22% Similarity=0.412 Sum_probs=87.2
Q ss_pred ceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCc
Q psy17693 37 CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI 116 (152)
Q Consensus 37 C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~ 116 (152)
|.|.+ ..++|++.+++++|..+|.+++.|++++ |.++.+++..|. ++++|+.|++++|.++.+.+.+|.++++
T Consensus 2 C~~~~----~~~~cs~~~L~~ip~~~~~~l~~L~Ls~-n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 74 (680)
T 1ziw_A 2 CTVSH----EVADCSHLKLTQVPDDLPTNITVLNLTH-NQLRRLPAANFT--RYSQLTSLDVGFNTISKLEPELCQKLPM 74 (680)
T ss_dssp --CBS----SEEECCSSCCSSCCSCSCTTCSEEECCS-SCCCCCCGGGGG--GGTTCSEEECCSSCCCCCCTTHHHHCTT
T ss_pred ceeEC----CeeECCCCCccccccccCCCCcEEECCC-CCCCCcCHHHHh--CCCcCcEEECCCCccCccCHHHHhcccC
Confidence 67764 3899999999999999999999999999 999999888887 7788888888888888887777877888
Q ss_pred CcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 117 LIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 117 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
|+.|++++|+++.++++.|.++++|++|+++++
T Consensus 75 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 107 (680)
T 1ziw_A 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred cCEEECCCCccCccChhhhccCCCCCEEECCCC
Confidence 888888888888777777777777777777654
No 34
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=112.91 Aligned_cols=115 Identities=23% Similarity=0.258 Sum_probs=100.4
Q ss_pred CCCCCceeeecC------------CcceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEE
Q psy17693 32 DCEHLCKCKWTN------------GRKGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNL 96 (152)
Q Consensus 32 ~cp~~C~C~~~~------------~~~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L 96 (152)
.||..|.|.... ..+.++.++++++.+|. .+. ++++.|++++ |.++.+++.+|. ++++|+.|
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~--~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS-NGINTIEEDSFS--SLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTT--TCTTCCEE
T ss_pred CCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCC-CccCccCHhhcC--CCCCCCEE
Confidence 799888775321 22468888999998886 333 7899999999 999999999998 89999999
Q ss_pred EccCCcCeecCcccccCCCcCcEEeCCCCCCCccCc-chhccCccCcEEEeecC
Q psy17693 97 LLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP-DACGLCRSMLFFYFRES 149 (152)
Q Consensus 97 ~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~~ 149 (152)
++++|.++.+++.+|.++++|++|++++|+++.++. +.|.++++|++|+++++
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCC
Confidence 999999999999889999999999999999999988 78999999999999876
No 35
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=4e-15 Score=108.26 Aligned_cols=65 Identities=23% Similarity=0.492 Sum_probs=47.2
Q ss_pred CceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcC
Q psy17693 36 LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNI 103 (152)
Q Consensus 36 ~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l 103 (152)
.|.|..-...+.++|++.+++.+|..++..++.|++++ |.++.+++..|. ++++|+.|++++|.+
T Consensus 3 ~C~~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~-N~l~~~~~~~~~--~l~~L~~L~L~~n~l 67 (290)
T 1p9a_G 3 ICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSE-NLLYTFSLATLM--PYTRLTQLNLDRAEL 67 (290)
T ss_dssp SSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTT-SCCSEEEGGGGT--TCTTCCEEECTTSCC
T ss_pred cccccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCC-CcCCccCHHHhh--cCCCCCEEECCCCcc
Confidence 57776544456899999999999999999999999999 888887766555 444444444443333
No 36
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=1e-14 Score=102.07 Aligned_cols=101 Identities=30% Similarity=0.417 Sum_probs=72.5
Q ss_pred ceEEecCCCCCCCCCC-CC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693 46 KGAACNNTGLSAIPRG-LS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL 122 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~-~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L 122 (152)
+.++.+++.++.+|.. +. ..++.|++++ |.++.+.+..|. ++++|+.|++++|.++.+++..|.++++|+.|+|
T Consensus 35 ~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQ--GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp CEEECCSSCCCEECTTSSTTCTTCCEEECCS-SCCCEECTTTTT--TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcCCCcCHhHhhCCCCCCEEECCC-CcCCCcCHHHhh--CCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 4677777777777652 22 5677777777 777777777777 6777777777777777777777777777777777
Q ss_pred CCCCCCccCcchhccCccCcEEEeecC
Q psy17693 123 TKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
++|+|+.++++.|.++++|+.|+|+++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence 777777777777777777777777654
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.59 E-value=4.4e-15 Score=121.68 Aligned_cols=105 Identities=28% Similarity=0.249 Sum_probs=88.6
Q ss_pred ceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCC-cCeecCcccccCCC
Q psy17693 37 CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDC-NITDIDPDAFSGLG 115 (152)
Q Consensus 37 C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n-~l~~i~~~~f~~l~ 115 (152)
|.|.+ ..++|++.+++.||. +|+.++.|++++ |.|+.+.+..|. ++++|+.|++++| .+..+++.+|.+++
T Consensus 2 C~~~~----~~~dcs~~~L~~vP~-lp~~l~~LdLs~-N~i~~i~~~~~~--~l~~L~~LdLs~n~~~~~i~~~~f~~L~ 73 (844)
T 3j0a_A 2 CSFDG----RIAFYRFCNLTQVPQ-VLNTTERLLLSF-NYIRTVTASSFP--FLEQLQLLELGSQYTPLTIDKEAFRNLP 73 (844)
T ss_dssp CBTTT----EEEEESCCCSSCCCS-SCTTCCEEEEES-CCCCEECSSSCS--SCCSCSEEEECTTCCCCEECTTTTSSCT
T ss_pred ceEec----eEEEccCCCCCCCCC-CCCCcCEEECCC-CcCCccChhHCc--ccccCeEEeCCCCCCccccCHHHhcCCC
Confidence 66653 489999999999998 999999999999 999999888888 7888888888888 56677778888888
Q ss_pred cCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 116 ILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 116 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+|+.|+|++|+++.+.++.|.++++|++|+|+++
T Consensus 74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107 (844)
T ss_dssp TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred CCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence 8888888888888887778888888888887754
No 38
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=1.1e-14 Score=99.84 Aligned_cols=102 Identities=23% Similarity=0.338 Sum_probs=93.9
Q ss_pred cceEEecCCCCCCCCCC--CC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEE
Q psy17693 45 RKGAACNNTGLSAIPRG--LS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIEL 120 (152)
Q Consensus 45 ~~~~~c~~~~l~~iP~~--~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L 120 (152)
.+.++.+++.++.+|.. +. ..+++|++++ |.++.+.+.+|. ++++|+.|++++|.++.+.+.+|.++++|+.|
T Consensus 31 l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFE--GASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTT--TCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCEEECCCCcCCccCCccccccCCCCCEEECCC-CCCCCcCHhHcC--CcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 45788999999988863 32 7899999999 999999999999 89999999999999999999999999999999
Q ss_pred eCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 121 DLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 121 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+|++|+++.+.++.|..+++|++|+++++
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 99999999999999999999999999876
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.58 E-value=1e-14 Score=114.97 Aligned_cols=102 Identities=22% Similarity=0.261 Sum_probs=94.8
Q ss_pred cceEEecCCCCCCCCCC-CC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEe
Q psy17693 45 RKGAACNNTGLSAIPRG-LS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELD 121 (152)
Q Consensus 45 ~~~~~c~~~~l~~iP~~-~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~ 121 (152)
.+.++.+++.++.+|.. +. +++++|++++ |.|+.+++++|. ++++|+.|++++|+++.+++++|.++++|++|+
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~-N~i~~i~~~~f~--~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTTTT--TCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCC-CcCCCcChhHhc--CCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 46899999999999863 33 7899999999 999999999999 899999999999999999999999999999999
Q ss_pred CCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 122 LTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 122 L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+++|+++.+++..|+++++|++|+++++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHN 158 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccC
Confidence 9999999999999999999999999865
No 40
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=2.4e-14 Score=100.23 Aligned_cols=100 Identities=21% Similarity=0.327 Sum_probs=61.2
Q ss_pred ceEEecCCCCCCCCC-C-CC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEe
Q psy17693 46 KGAACNNTGLSAIPR-G-LS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELD 121 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~-~-~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~ 121 (152)
+.++.+++.++.++. . +. ..++.|++++ |.++.+++.+|. ++++|+.|++++|.++.+.+.+|.++++|+.|+
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSN-NKITDIEEGAFE--GASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCS-SCCCEECTTTTT--TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCC-CcCCEECHHHhC--CCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 356666666666632 2 11 5566666666 666666666666 566666666666666666666666666666666
Q ss_pred CCCCCCCccCcchhccCccCcEEEeec
Q psy17693 122 LTKNRIHTLHPDACGLCRSMLFFYFRE 148 (152)
Q Consensus 122 L~~N~l~~l~~~~~~~l~~L~~L~L~~ 148 (152)
|++|+|+.++++.|.++++|++|+|++
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYD 138 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTT
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCC
Confidence 666666666555566666666666654
No 41
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=4.4e-14 Score=95.45 Aligned_cols=103 Identities=20% Similarity=0.348 Sum_probs=93.5
Q ss_pred cceEEecCCCCCCCCCCC-C--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEe
Q psy17693 45 RKGAACNNTGLSAIPRGL-S--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELD 121 (152)
Q Consensus 45 ~~~~~c~~~~l~~iP~~~-~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~ 121 (152)
.+.++.+++.++.+|... . ..+++|++++ |.++.+++..|. ++++|+.|++++|.++.+++..|..+++|+.|+
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFD--KLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEEeCCCcccEeCHHHhcCcccccEEECCC-CcceEeChhHcc--CCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 357888888999888643 2 7899999999 999999999888 899999999999999999999999999999999
Q ss_pred CCCCCCCccCcchhccCccCcEEEeecCC
Q psy17693 122 LTKNRIHTLHPDACGLCRSMLFFYFREST 150 (152)
Q Consensus 122 L~~N~l~~l~~~~~~~l~~L~~L~L~~~~ 150 (152)
+++|+++.++++.|.++++|++|+++++.
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 99999999999999999999999998753
No 42
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=3.6e-14 Score=103.18 Aligned_cols=101 Identities=21% Similarity=0.278 Sum_probs=86.4
Q ss_pred ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693 46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~ 123 (152)
+.++.+++.++.+|..+. ..+++|++++ |.++.+++..|. ++++|+.|++++|.++.+++..|..+++|+.|+++
T Consensus 80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALR--GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp CEEECCSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CEEECCCCcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHc--CCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 467788888888886543 6788999999 999998888888 78899999999999999888888889999999999
Q ss_pred CCCCCccCcchhccCccCcEEEeecC
Q psy17693 124 KNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 124 ~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+|+|+.++++.|.++++|+.|+++++
T Consensus 157 ~N~l~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 157 NNNLTELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp TSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCCccCHHHhcCcCCCCEEECCCC
Confidence 99999998888888888998888764
No 43
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.53 E-value=9.6e-14 Score=95.98 Aligned_cols=100 Identities=21% Similarity=0.315 Sum_probs=57.7
Q ss_pred ceEEecCCCCCCCCCCC-C--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693 46 KGAACNNTGLSAIPRGL-S--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL 122 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~-~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L 122 (152)
+.++.++++++.+|... . ..+++|++++ |.++.+++..|. ++++|+.|++++|.++.+++..|..+++|+.|++
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFN--KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEcCCCccCcCChhhhcccccCcEEECCC-CccCccChhhcC--CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 35566666666555432 1 4556666666 666666555555 5556666666666666555555555566666666
Q ss_pred CCCCCCccCcchhccCccCcEEEeec
Q psy17693 123 TKNRIHTLHPDACGLCRSMLFFYFRE 148 (152)
Q Consensus 123 ~~N~l~~l~~~~~~~l~~L~~L~L~~ 148 (152)
++|+++.++++.|.++++|++|++++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCcCcccCHhHhccCCcCCEEECCC
Confidence 66666555555555555555555554
No 44
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=1.2e-13 Score=98.27 Aligned_cols=82 Identities=23% Similarity=0.320 Sum_probs=41.9
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF 143 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 143 (152)
.++++|++++ |.++.+++..|. ++++|+.|++++|.++.+++.+|..+++|+.|++++|+++.++++.|.++++|+.
T Consensus 107 ~~L~~L~L~~-N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 183 (251)
T 3m19_A 107 TQLDKLYLGG-NQLKSLPSGVFD--RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183 (251)
T ss_dssp TTCCEEECCS-SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCCEEEcCC-CcCCCcChhHhc--cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 3444455555 555544444444 4455555555555555555444555555555555555555555555555555555
Q ss_pred EEeec
Q psy17693 144 FYFRE 148 (152)
Q Consensus 144 L~L~~ 148 (152)
|++++
T Consensus 184 L~l~~ 188 (251)
T 3m19_A 184 ITLFG 188 (251)
T ss_dssp EECCS
T ss_pred EEeeC
Confidence 55544
No 45
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.51 E-value=3.2e-14 Score=110.44 Aligned_cols=98 Identities=19% Similarity=0.211 Sum_probs=79.4
Q ss_pred ceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCC
Q psy17693 46 KGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N 125 (152)
+.++|++++++.+|..+++.+++|++++ |.++.+++..|. ++++|+.|++++|.++.+.+.+|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~-n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQ-NYISELWTSDIL--SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCS-SCCCCCCHHHHT--TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcccccccccccccEEECCC-CcccccChhhcc--ccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 4789999999999988888999999999 888888877787 7888888888888888888888888888888888888
Q ss_pred CCCccCcchhccCccCcEEEeecC
Q psy17693 126 RIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 126 ~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+++.++.. .+++|++|+++++
T Consensus 80 ~l~~lp~~---~l~~L~~L~L~~N 100 (520)
T 2z7x_B 80 KLVKISCH---PTVNLKHLDLSFN 100 (520)
T ss_dssp CCCEEECC---CCCCCSEEECCSS
T ss_pred ceeecCcc---ccCCccEEeccCC
Confidence 87776544 4556666666543
No 46
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=1.8e-13 Score=102.23 Aligned_cols=101 Identities=22% Similarity=0.215 Sum_probs=75.1
Q ss_pred ceEEecCCCCCCCCCCC----CCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEe
Q psy17693 46 KGAACNNTGLSAIPRGL----SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELD 121 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~----~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~ 121 (152)
+.++.+++.++.+|... -.+++.|++++ |.|+.+++..|. ++++|+.|++++|.++.+.+..|.++++|+.|+
T Consensus 42 ~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFV--PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp SEEECCSSCCCEECTTSSSSCCTTCCEEECCS-SCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEECCCCCCCccChhhhhhcccccCEEECCC-CcCCccChhhcc--CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 46777888887776542 15677788888 778777777777 677777777777777777777777777777777
Q ss_pred CCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 122 LTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 122 L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
|++|+|+.++++.|.++++|+.|+|+++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCC
Confidence 7777777777777777777777777654
No 47
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=3.8e-13 Score=94.56 Aligned_cols=100 Identities=18% Similarity=0.209 Sum_probs=68.9
Q ss_pred ceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693 46 KGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL 122 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L 122 (152)
+.++.+++.++.++. .+. .+++.|++++ |.+..+++..|. ++++|+.|++++|.++.+++..|..+++|+.|++
T Consensus 43 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 43 QILYLHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFD--SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCccCccCHHHhhCccCCcEEECCC-CCCCCcChhhcc--cCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 467777777777643 222 5677777777 777777777776 6777777777777777777777777777777777
Q ss_pred CCCCCCccCcchhccCccCcEEEeecC
Q psy17693 123 TKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
++|+|+.++.. +.++++|++|+++++
T Consensus 120 s~N~l~~lp~~-~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 120 CCNKLTELPRG-IERLTHLTHLALDQN 145 (229)
T ss_dssp CSSCCCSCCTT-GGGCTTCSEEECCSS
T ss_pred cCCcccccCcc-cccCCCCCEEECCCC
Confidence 77777766543 456666666666653
No 48
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.47 E-value=5e-13 Score=95.94 Aligned_cols=63 Identities=30% Similarity=0.476 Sum_probs=23.7
Q ss_pred CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCcc
Q psy17693 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130 (152)
Q Consensus 65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l 130 (152)
++++|++++ |.++.+++..|. ++++|+.|++++|.++.+++..|..+++|+.|++++|+++.+
T Consensus 62 ~L~~L~l~~-n~l~~i~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 124 (270)
T 2o6q_A 62 KLRLLYLND-NKLQTLPAGIFK--ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL 124 (270)
T ss_dssp TCCEEECCS-SCCSCCCTTTTS--SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCC
T ss_pred CCCEEECCC-CccCeeChhhhc--CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCee
Confidence 334444444 444433333333 333333333333333333333333333333333333333333
No 49
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.44 E-value=9.9e-13 Score=94.54 Aligned_cols=80 Identities=23% Similarity=0.417 Sum_probs=34.2
Q ss_pred CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEE
Q psy17693 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFF 144 (152)
Q Consensus 65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 144 (152)
.++.|++++ |.++.+++..|. .+++|+.|++++|.++.+.+..|..+++|+.|++++|+++.++++.|..+++|+.|
T Consensus 134 ~L~~L~L~~-n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 134 NLTYLNLAH-NQLQSLPKGVFD--KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210 (272)
T ss_dssp TCCEEECCS-SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCEEECCC-CccCccCHHHhc--cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence 344444444 444444443333 33444444444444444444444444444444444444444444444444444444
Q ss_pred Eee
Q psy17693 145 YFR 147 (152)
Q Consensus 145 ~L~ 147 (152)
+++
T Consensus 211 ~l~ 213 (272)
T 3rfs_A 211 WLH 213 (272)
T ss_dssp ECC
T ss_pred Ecc
Confidence 443
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.44 E-value=8.6e-13 Score=100.76 Aligned_cols=101 Identities=23% Similarity=0.324 Sum_probs=91.2
Q ss_pred ceEEecCCCCCCCCCCCC-CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693 46 KGAACNNTGLSAIPRGLS-KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~-~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~ 124 (152)
+.++.+++.++.+|.... .+++.|++++ |.++.+++..|. ++++|+.|++++|.++.+.+.+|.++++|+.|+|++
T Consensus 188 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 188 RYLNLAMCNLREIPNLTPLIKLDELDLSG-NHLSAIRPGSFQ--GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp CEEECTTSCCSSCCCCTTCSSCCEEECTT-SCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred CeecCCCCcCccccccCCCcccCEEECCC-CccCccChhhhc--cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence 467788888888885222 7899999999 999999999999 899999999999999999999999999999999999
Q ss_pred CCCCccCcchhccCccCcEEEeecC
Q psy17693 125 NRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 125 N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
|+++.++++.|..+++|+.|+|+++
T Consensus 265 N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 265 NNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp SCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCccChhHhccccCCCEEEcCCC
Confidence 9999999999999999999999876
No 51
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=8e-13 Score=89.23 Aligned_cols=99 Identities=22% Similarity=0.233 Sum_probs=79.6
Q ss_pred ceEEecCCCCCCCCCC--CCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693 46 KGAACNNTGLSAIPRG--LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~--~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~ 123 (152)
+.++.++++++.+|.- ..++++.|++++ |.++.+ ..|. .+++|+.|++++|.++.+++..|..+++|+.|+++
T Consensus 22 ~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~-N~l~~~--~~l~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 22 RELDLRGYKIPVIENLGATLDQFDAIDFSD-NEIRKL--DGFP--LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp EEEECTTSCCCSCCCGGGGTTCCSEEECCS-SCCCEE--CCCC--CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred eEEEeeCCCCchhHHhhhcCCCCCEEECCC-CCCCcc--cccc--cCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 4688888888887642 124888999999 888887 4566 68889999999999988888877888899999999
Q ss_pred CCCCCccCc-chhccCccCcEEEeecC
Q psy17693 124 KNRIHTLHP-DACGLCRSMLFFYFRES 149 (152)
Q Consensus 124 ~N~l~~l~~-~~~~~l~~L~~L~L~~~ 149 (152)
+|+++.++. +.+.++++|+.|+++++
T Consensus 97 ~N~i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 97 NNSLVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp SCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred CCcCCcchhhHhhhcCCCCCEEEecCC
Confidence 999888765 46788888898888765
No 52
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.42 E-value=1.5e-12 Score=93.53 Aligned_cols=101 Identities=22% Similarity=0.304 Sum_probs=92.8
Q ss_pred ceEEecCCCCCCCCCCC---CCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693 46 KGAACNNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL 122 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~---~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L 122 (152)
+.++.+++.++.+|... ...+++|++++ |.++.+++..|. ++++|+.|++++|.++.+++..|..+++|+.|++
T Consensus 88 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 88 TYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFD--KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCccChhHhcCCcCCCEEECCC-CcCCccCHHHhc--cCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 47888899999888643 27899999999 999999999888 8999999999999999999999999999999999
Q ss_pred CCCCCCccCcchhccCccCcEEEeecC
Q psy17693 123 TKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
++|+++.++++.|.++++|++|+++++
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCC
Confidence 999999999999999999999999875
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.41 E-value=2.1e-12 Score=93.21 Aligned_cols=100 Identities=29% Similarity=0.458 Sum_probs=58.9
Q ss_pred eEEecCCCCCCCCCC-CC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693 47 GAACNNTGLSAIPRG-LS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~-~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~ 123 (152)
.++.+++.++.+|.. +. .+++.|++++ |.++.+++..|. ++++|+.|++++|.++.+.+.+|..+++|+.|+++
T Consensus 133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhc--CccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 444455555554432 11 4556666666 666666655555 55666666666666666656666666666666666
Q ss_pred CCCCCccCcchhccCccCcEEEeecC
Q psy17693 124 KNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 124 ~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+|+++.++++.|..+++|+.|+++++
T Consensus 210 ~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 210 ANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp SSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred CCcCCcCCHHHcccCcccCEEeccCC
Confidence 66666666666666666666666543
No 54
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.40 E-value=1.1e-12 Score=102.35 Aligned_cols=116 Identities=22% Similarity=0.236 Sum_probs=97.8
Q ss_pred CCCCCceeeecC------------CcceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEE
Q psy17693 32 DCEHLCKCKWTN------------GRKGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNL 96 (152)
Q Consensus 32 ~cp~~C~C~~~~------------~~~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L 96 (152)
+||..|.|.... ..+.++.+++.++.++. .+. +.+++|++++ |.++.+++.+|. ++++|+.|
T Consensus 3 ~C~~~~~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~--~l~~L~~L 79 (549)
T 2z81_A 3 SCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS-SRINTIEGDAFY--SLGSLEHL 79 (549)
T ss_dssp EECTTSEEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTT-SCCCEECTTTTT--TCTTCCEE
T ss_pred cCCCCceEECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCC-CCcCccChhhcc--ccccCCEE
Confidence 588888775321 23578888888887753 444 7899999999 999999999998 89999999
Q ss_pred EccCCcCeecCcccccCCCcCcEEeCCCCCCCccC-cchhccCccCcEEEeecCC
Q psy17693 97 LLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH-PDACGLCRSMLFFYFREST 150 (152)
Q Consensus 97 ~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~~~ 150 (152)
++++|.++.+.+.+|.++++|++|++++|+++.++ +..|.++++|++|+++++.
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence 99999999999988999999999999999999764 4578899999999998753
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.39 E-value=1.8e-12 Score=99.28 Aligned_cols=101 Identities=22% Similarity=0.340 Sum_probs=89.7
Q ss_pred ceEEecCCCCCCCCCCCC-CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693 46 KGAACNNTGLSAIPRGLS-KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~-~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~ 124 (152)
+.++.+++.++.+|.-.. .+++.|++++ |.++.+++..|. ++++|+.|++++|.++.+.+.+|.++++|+.|+|++
T Consensus 199 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 199 KYLNLGMCNIKDMPNLTPLVGLEELEMSG-NHFPEIRPGSFH--GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275 (452)
T ss_dssp CEEECTTSCCSSCCCCTTCTTCCEEECTT-SCCSEECGGGGT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcccccccccccccccEEECcC-CcCcccCccccc--CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC
Confidence 467777888888875222 6899999999 999999999998 899999999999999999999999999999999999
Q ss_pred CCCCccCcchhccCccCcEEEeecC
Q psy17693 125 NRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 125 N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
|+++.++++.|..+++|+.|+++++
T Consensus 276 N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 276 NNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp SCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred CcCCccChHHhccccCCCEEEccCC
Confidence 9999999999999999999999876
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.39 E-value=2.2e-12 Score=92.70 Aligned_cols=101 Identities=22% Similarity=0.279 Sum_probs=67.4
Q ss_pred ceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693 46 KGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL 122 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L 122 (152)
+.++.++++++.+|. .+. .++++|++++ |.+..+++..|. ++++|+.|++++|.++.+.+.+|.++++|+.|++
T Consensus 31 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCSEEECTT-CCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred cEEECCCCcccccCHhHhccccCCcEEECCC-CcCCccCHHHcc--CCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 467777777776664 232 5677777777 777777776666 6677777777777777776666666666666666
Q ss_pred CCCCCCccCcchhccCccCcEEEeecC
Q psy17693 123 TKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
++|+++.+++..|.++++|++|+++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n 134 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHN 134 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCC
Confidence 666666666555666666666666543
No 57
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.38 E-value=9.9e-13 Score=85.00 Aligned_cols=66 Identities=23% Similarity=0.397 Sum_probs=61.2
Q ss_pred CCCCCceeeecCCcceEEecCCCCC--CCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCe
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLS--AIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNIT 104 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~--~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~ 104 (152)
+||..|.|.. ..|+|++++++ .+|..+|.+++.|+|++ |.|+.++.+.|. ++++|+.|++++|.+.
T Consensus 1 ~CP~~C~C~~----~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~-N~l~~l~~~~f~--~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 1 PCPAPCSCAG----TLVDCGRRGLTWASLPTAFPVDTTELVLTG-NNLTALPPGLLD--ALPALRTAHLGANPWR 68 (130)
T ss_dssp CCCTTCEEET----TEEECCSSCCCTTTSCSCCCTTCSEEECTT-SCCSSCCTTTGG--GCTTCCEEECCSSCCB
T ss_pred CcCCCCEEcC----CEEEeCCCCCccccCCCCCCcCCCEEECCC-CcCCccChhhhh--hccccCEEEecCCCee
Confidence 4999999973 48999999999 99999999999999999 999999999999 8999999999999763
No 58
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.38 E-value=3.1e-12 Score=94.09 Aligned_cols=100 Identities=24% Similarity=0.327 Sum_probs=88.9
Q ss_pred ceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCC
Q psy17693 46 KGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N 125 (152)
+.++.+++.++.+|..++..++.|++++ |.++.+++..|. ++++|+.|++++|.++.+.+.+|..+++|+.|++++|
T Consensus 174 ~~L~l~~n~l~~l~~~~~~~L~~L~l~~-n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 174 SYIRIADTNITTIPQGLPPSLTELHLDG-NKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp CEEECCSSCCCSCCSSCCTTCSEEECTT-SCCCEECTGGGT--TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred CEEECCCCccccCCccccccCCEEECCC-CcCCccCHHHhc--CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 4788888889999988889999999999 999999888888 8899999999999999998888999999999999999
Q ss_pred CCCccCcchhccCccCcEEEeecC
Q psy17693 126 RIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 126 ~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+++.++.. +..+++|++|+++++
T Consensus 251 ~l~~lp~~-l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 251 KLVKVPGG-LADHKYIQVVYLHNN 273 (330)
T ss_dssp CCSSCCTT-TTTCSSCCEEECCSS
T ss_pred cCccCChh-hccCCCcCEEECCCC
Confidence 99988665 678899999999864
No 59
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.37 E-value=9.1e-13 Score=99.00 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=65.8
Q ss_pred eEEecCCCCCCCCCCCC---CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693 47 GAACNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~~---~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~ 123 (152)
.++.++..++.+|..+. +++++|++++ |.++.+++..|. ++++|+.|++++|.++.+.+.+|.++++|+.|+++
T Consensus 49 ~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 49 IVTFKNSTMRKLPAALLDSFRQVELLNLND-LQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp EEEEESCEESEECTHHHHHCCCCSEEECTT-SCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEEecCCchhhCChhHhcccccCcEEECCC-CcccccChhhcc--CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 34555555556665321 5667777777 777777766666 66677777777777777666666667777777777
Q ss_pred CCCCCccCcchhccCccCcEEEeecC
Q psy17693 124 KNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 124 ~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+|+++.++++.|.++++|++|+++++
T Consensus 126 ~n~l~~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 126 RNDLSSLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCcCCHHHhcCCCCCcEEECCCC
Confidence 77777666666666666777766653
No 60
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.35 E-value=5.2e-12 Score=94.85 Aligned_cols=101 Identities=18% Similarity=0.289 Sum_probs=88.5
Q ss_pred ceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693 46 KGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL 122 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L 122 (152)
+.++.++..++.+|. .+. .++++|++++ |.++.+++..|. ++++|+.|++++|.++.+++..|..+++|+.|++
T Consensus 72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEECCCCcccccChhhccCCCCcCEEECCC-CCCCcCCHHHhc--CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 467888888888775 333 7899999999 999999998888 8899999999999999998888899999999999
Q ss_pred CCCCCCccCcchhccCccCcEEEeecC
Q psy17693 123 TKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
++|+++.++++.|.++++|++|+++++
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred CCCccCccChhhccCCCCCCEEECCCC
Confidence 999999999988999999999999865
No 61
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.35 E-value=4.3e-12 Score=96.80 Aligned_cols=100 Identities=19% Similarity=0.246 Sum_probs=63.8
Q ss_pred eEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693 47 GAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123 (152)
Q Consensus 47 ~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~ 123 (152)
.++.+++.+..++. .+. ..++.|++++ |.+..+++..|. ++++|+.|++++|.++.+.+.+|.++++|+.|+++
T Consensus 303 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQ-NFLGSIDSRMFE--NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379 (455)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCEECGGGGT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEECCCCcccccChhHhcCcccCCEEECCC-CccCCcChhHhc--CcccCCEEECCCCcccccChhhccccccccEEECC
Confidence 45555555554432 222 4566666666 666666666666 56667777777777766666666667777777777
Q ss_pred CCCCCccCcchhccCccCcEEEeecC
Q psy17693 124 KNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 124 ~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+|+++.++++.|.++++|++|+++++
T Consensus 380 ~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 380 TNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccccCCHhHhccCCcccEEEccCC
Confidence 77777776666666777777776654
No 62
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=2.7e-12 Score=85.78 Aligned_cols=82 Identities=23% Similarity=0.263 Sum_probs=37.9
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCc-ccccCCCcCcEEeCCCCCCCccCc---chhccCc
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHTLHP---DACGLCR 139 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~L~~N~l~~l~~---~~~~~l~ 139 (152)
..+++|++++ |.+....+..+. .+++|+.|++++|.++.++. ..|..+++|+.|++++|+++.+++ ..|..++
T Consensus 71 ~~L~~L~Ls~-N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~ 147 (168)
T 2ell_A 71 PKLKKLELSE-NRIFGGLDMLAE--KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP 147 (168)
T ss_dssp SSCCEEEEES-CCCCSCCCHHHH--HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS
T ss_pred CCCCEEECcC-CcCchHHHHHHh--hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc
Confidence 3444444444 444443333332 34445555555555444432 344445555555555555554444 3444555
Q ss_pred cCcEEEeec
Q psy17693 140 SMLFFYFRE 148 (152)
Q Consensus 140 ~L~~L~L~~ 148 (152)
+|++|++++
T Consensus 148 ~L~~L~l~~ 156 (168)
T 2ell_A 148 QLTYLDGYD 156 (168)
T ss_dssp SCCEETTEE
T ss_pred cCcEecCCC
Confidence 555554443
No 63
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.34 E-value=2.5e-12 Score=90.64 Aligned_cols=100 Identities=19% Similarity=0.272 Sum_probs=84.0
Q ss_pred cceEEecCCCCCCCCCC-CC--CCcEEEEecCCCc-ccccCCCcccccCCCcccEEEccC-CcCeecCcccccCCCcCcE
Q psy17693 45 RKGAACNNTGLSAIPRG-LS--KDVQYLDLGKCNV-IFCFPADAFRSTGLVNLHNLLLKD-CNITDIDPDAFSGLGILIE 119 (152)
Q Consensus 45 ~~~~~c~~~~l~~iP~~-~~--~~l~~L~l~~~n~-i~~i~~~~f~~~~l~~L~~L~l~~-n~l~~i~~~~f~~l~~L~~ 119 (152)
.+.++.++++++.+|.. +. +.++.|++++ |. ++.+++.+|. ++++|+.|++++ |.++.+++.+|.++++|+.
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~-n~~l~~i~~~~f~--~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSI-DVTLQQLESHSFY--NLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEEC-CSSCCEECTTTEE--SCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCC-CCCcceeCHhHcC--CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 45788899999998873 32 7899999999 97 9999999998 899999999998 9999999999999999999
Q ss_pred EeCCCCCCCccCcchhccCccCc---EEEeecC
Q psy17693 120 LDLTKNRIHTLHPDACGLCRSML---FFYFRES 149 (152)
Q Consensus 120 L~L~~N~l~~l~~~~~~~l~~L~---~L~L~~~ 149 (152)
|++++|+++.++. |.++++|+ +|+++++
T Consensus 110 L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 110 LGIFNTGLKMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EEEEEECCCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred EeCCCCCCccccc--cccccccccccEEECCCC
Confidence 9998888777654 56666666 7776654
No 64
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.34 E-value=4.8e-12 Score=97.29 Aligned_cols=101 Identities=20% Similarity=0.290 Sum_probs=78.6
Q ss_pred ceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693 46 KGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL 122 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L 122 (152)
+.++.+++.++.++. .+. ..+++|++++ |.+..+.+.+|. ++++|+.|++++|.++.+++..|.++++|+.|++
T Consensus 35 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNE-NIVSAVEPGAFN--NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTT--TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred cEEECCCCccceECHhHccCCCCCCEEECCC-CccCEeChhhhh--CCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 467888888887754 333 6788888888 888888777787 7788888888888888887777888888888888
Q ss_pred CCCCCCccCcchhccCccCcEEEeecC
Q psy17693 123 TKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
++|+++.+.+..|.++++|++|+++++
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred CCCccccCChhHccccccCCEEECCCC
Confidence 888888777777777777777777654
No 65
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=2.7e-12 Score=84.19 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=57.0
Q ss_pred eEEecCCCCC--CCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693 47 GAACNNTGLS--AIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL 122 (152)
Q Consensus 47 ~~~c~~~~l~--~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L 122 (152)
.++.++.+++ .+|..+. ++++.|++++ |.++.+ ..+. .+++|+.|++++|.++...+..+..+++|+.|++
T Consensus 21 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~--~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 21 ELVLDNSRSNEGKLEGLTDEFEELEFLSTIN-VGLTSI--ANLP--KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp EEECTTCBCBTTBCCSCCTTCTTCCEEECTT-SCCCCC--TTCC--CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred EEEccCCcCChhHHHHHHhhcCCCcEEECcC-CCCCCc--hhhh--cCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 5566666655 5554332 4566666666 666655 3444 4566666666666666544445555666666666
Q ss_pred CCCCCCccC-cchhccCccCcEEEeecC
Q psy17693 123 TKNRIHTLH-PDACGLCRSMLFFYFRES 149 (152)
Q Consensus 123 ~~N~l~~l~-~~~~~~l~~L~~L~L~~~ 149 (152)
++|+++.++ +..+.++++|++|+++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 666666653 244566666666666543
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.33 E-value=1.5e-12 Score=95.87 Aligned_cols=99 Identities=21% Similarity=0.255 Sum_probs=82.7
Q ss_pred eEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCC
Q psy17693 47 GAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~ 126 (152)
.++.+++.++.+|..+++.++.|++++ |.++.+++..|. ++++|+.|++++|.++.+.+.+|..+++|+.|++++|+
T Consensus 176 ~L~l~~n~l~~l~~~~~~~L~~L~l~~-n~i~~~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 176 YLRISEAKLTGIPKDLPETLNELHLDH-NKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp CCBCCSSBCSSCCSSSCSSCSCCBCCS-SCCCCCCTTSST--TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred EEECcCCCCCccCccccCCCCEEECCC-CcCCccCHHHhc--CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc
Confidence 566667777788887778888899999 988888888887 78889999999999888888888888899999999998
Q ss_pred CCccCcchhccCccCcEEEeecC
Q psy17693 127 IHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 127 l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
++.++.. +..+++|+.|+++++
T Consensus 253 l~~lp~~-l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 253 LSRVPAG-LPDLKLLQVVYLHTN 274 (332)
T ss_dssp CCBCCTT-GGGCTTCCEEECCSS
T ss_pred CeecChh-hhcCccCCEEECCCC
Confidence 8888665 678888888888764
No 67
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.33 E-value=5.4e-12 Score=99.54 Aligned_cols=101 Identities=25% Similarity=0.352 Sum_probs=78.6
Q ss_pred ceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693 46 KGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL 122 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L 122 (152)
+.++.+++.++.+|. .+. +.+++|++++ |.++.+++.+|. ++++|+.|++++|.++.+.+.+|.++++|++|++
T Consensus 35 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~i~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSR-CEIETIEDKAWH--GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTTTT--TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CEEECCCCCcCEeChhhccCCccCcEEeCCC-CcccccCHHHhh--chhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 467888888887765 333 6788888888 888888888787 7788888888888888887778888888888888
Q ss_pred CCCCCCccCcchhccCccCcEEEeecC
Q psy17693 123 TKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
++|+++.+++..|.++++|++|+++++
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n 138 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHN 138 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSS
T ss_pred cCCccccccccccCCCCCCCEEeCCCC
Confidence 888887777666777777777777654
No 68
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=4.1e-12 Score=85.45 Aligned_cols=77 Identities=21% Similarity=0.310 Sum_probs=71.1
Q ss_pred EEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEe
Q psy17693 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYF 146 (152)
Q Consensus 67 ~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 146 (152)
+.+++++ |.++.+|...+ .+++.|++++|.++.+.+..|.++++|+.|+|++|+|+.++++.|.++++|++|+|
T Consensus 12 ~~l~~s~-n~l~~ip~~~~-----~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 12 TTVDCSG-KSLASVPTGIP-----TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TEEECTT-SCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEeCC-CCcCccCccCC-----CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 5789999 99999987543 57999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q psy17693 147 RES 149 (152)
Q Consensus 147 ~~~ 149 (152)
+++
T Consensus 86 ~~N 88 (170)
T 3g39_A 86 NDN 88 (170)
T ss_dssp CSS
T ss_pred CCC
Confidence 875
No 69
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.32 E-value=7.2e-12 Score=98.80 Aligned_cols=102 Identities=19% Similarity=0.236 Sum_probs=88.8
Q ss_pred cceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEe
Q psy17693 45 RKGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELD 121 (152)
Q Consensus 45 ~~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~ 121 (152)
.+.++.+++.++.++. .+. .++++|++++ |.+..+.+.+|. ++++|+.|++++|.++.+.+.+|.++++|++|+
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTR-CQIYWIHEDTFQ--SQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTCTTCSEEECTT-CCCCEECTTTTT--TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcEEEccCCccCcCChhHhccCccceEEECCC-CccceeChhhcc--CccccCeeeCCCCcccccChhhhcccccccEee
Confidence 3578999999988854 443 7899999999 999999999998 889999999999999999888899999999999
Q ss_pred CCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 122 LTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 122 L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+++|+++.+++..|.++++|++|+++++
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n 139 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSN 139 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSS
T ss_pred ccccCcccCCcchhccCCcccEEECCCC
Confidence 9999999988888888999999988764
No 70
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.31 E-value=9.3e-12 Score=97.29 Aligned_cols=101 Identities=22% Similarity=0.264 Sum_probs=73.7
Q ss_pred ceEEecCCCCCCCCCC-CC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693 46 KGAACNNTGLSAIPRG-LS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL 122 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~-~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L 122 (152)
+.++.+++.++.++.. +. +.+++|++++ |.+..+++.+|. ++++|+.|++++|.++.+++.+|.++++|++|++
T Consensus 31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp CEEECCSCCCCEECTTTTTTCSSCCEEECTT-CCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred cEEEccCCccCccChhHhhCCCCceEEECCC-CcCCccCccccc--CchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 4677777777776642 22 6777888888 778777777777 6777888888888777777777777777777777
Q ss_pred CCCCCCccCcchhccCccCcEEEeecC
Q psy17693 123 TKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
++|+++.+++..|.++++|++|+++++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n 134 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHN 134 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSS
T ss_pred cccccccCCCccccccccccEEecCCC
Confidence 777777776666677777777777654
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.31 E-value=3.3e-12 Score=101.04 Aligned_cols=99 Identities=18% Similarity=0.243 Sum_probs=63.9
Q ss_pred EEecCCCCCCCCCCCC---CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693 48 AACNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124 (152)
Q Consensus 48 ~~c~~~~l~~iP~~~~---~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~ 124 (152)
++.++..+..+|..+. +.++.|++++ |.+..+++..|. ++++|+.|++++|.++.+++..|.++++|+.|+|++
T Consensus 56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 132 (597)
T 3oja_B 56 VTFKNSTMRKLPAALLDSFRQVELLNLND-LQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132 (597)
T ss_dssp EEESSCEESEECTHHHHHCCCCSEEECTT-SCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEeeCCCCCCcCHHHHccCCCCcEEECCC-CCCCCCChHHhc--CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC
Confidence 4444444555554321 4566777777 777777666666 666777777777777766666666667777777777
Q ss_pred CCCCccCcchhccCccCcEEEeecC
Q psy17693 125 NRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 125 N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
|+++.+++..|.++++|++|+++++
T Consensus 133 n~l~~l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 133 NDLSSLPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCCHHHhccCCCCCEEEeeCC
Confidence 7776666666666666666666653
No 72
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=8.2e-12 Score=98.51 Aligned_cols=97 Identities=23% Similarity=0.296 Sum_probs=82.0
Q ss_pred ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693 46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~ 123 (152)
+.++.+++.++.+|. +. ..++.|++++ |.++.+|. .|. ++++|+.|++++|.++.++ .|..+++|+.|+|+
T Consensus 444 ~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~-N~l~~lp~-~~~--~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 444 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSH-NRLRALPP-ALA--ALRCLEVLQASDNALENVD--GVANLPRLQELLLC 516 (567)
T ss_dssp SEEECTTSCCSSCCC-GGGGTTCCEEECCS-SCCCCCCG-GGG--GCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECC
T ss_pred eEEEecCCCCCCCcC-ccccccCcEeecCc-ccccccch-hhh--cCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECC
Confidence 368888888888886 54 6889999999 99998865 566 6889999999999998875 68889999999999
Q ss_pred CCCCCccC-cchhccCccCcEEEeecC
Q psy17693 124 KNRIHTLH-PDACGLCRSMLFFYFRES 149 (152)
Q Consensus 124 ~N~l~~l~-~~~~~~l~~L~~L~L~~~ 149 (152)
+|+|+.+. +..|.++++|+.|+|+++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 99999986 777889999999998765
No 73
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=3.2e-12 Score=86.21 Aligned_cols=101 Identities=14% Similarity=0.206 Sum_probs=87.8
Q ss_pred cceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCc-ccccCCCcCcEEe
Q psy17693 45 RKGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELD 121 (152)
Q Consensus 45 ~~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~ 121 (152)
-+.++.+++.++.++ .+. ..++.|++++ |.++.+++..|. ++++|+.|++++|.++.++. ..|..+++|+.|+
T Consensus 44 L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~-N~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 44 FDAIDFSDNEIRKLD-GFPLLRRLKTLLVNN-NRICRIGEGLDQ--ALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CSEEECCSSCCCEEC-CCCCCSSCCEEECCS-SCCCEECSCHHH--HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred CCEEECCCCCCCccc-ccccCCCCCEEECCC-CcccccCcchhh--cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence 357888889888874 444 6899999999 999999988777 78999999999999998875 4688999999999
Q ss_pred CCCCCCCccCcc---hhccCccCcEEEeecC
Q psy17693 122 LTKNRIHTLHPD---ACGLCRSMLFFYFRES 149 (152)
Q Consensus 122 L~~N~l~~l~~~---~~~~l~~L~~L~L~~~ 149 (152)
+++|+++.++.. .+..+++|+.|++++.
T Consensus 120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred ecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 999999998765 6889999999998865
No 74
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=1.2e-11 Score=97.93 Aligned_cols=101 Identities=18% Similarity=0.289 Sum_probs=90.6
Q ss_pred ceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693 46 KGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL 122 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L 122 (152)
+.++.+++.++.+|. .+. ..++.|++++ |.+..+++..|. ++++|+.|++++|.++.+++..|..+++|+.|++
T Consensus 78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEECCCCCCCCCChHHhcCCCCCCEEECCC-CcCCCCCHHHHc--CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 467888888888775 333 7899999999 999999999988 8999999999999999999998999999999999
Q ss_pred CCCCCCccCcchhccCccCcEEEeecC
Q psy17693 123 TKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
++|+++.++++.|.++++|+.|+++++
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCC
Confidence 999999999999999999999999865
No 75
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.28 E-value=2e-11 Score=97.49 Aligned_cols=101 Identities=23% Similarity=0.277 Sum_probs=72.8
Q ss_pred ceEEecCCCCCCCCCCC-C--CCcEEEEecCCCcccccCCCc--------ccccCCCcccEEEccCCcCeecCcccccCC
Q psy17693 46 KGAACNNTGLSAIPRGL-S--KDVQYLDLGKCNVIFCFPADA--------FRSTGLVNLHNLLLKDCNITDIDPDAFSGL 114 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~-~--~~l~~L~l~~~n~i~~i~~~~--------f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l 114 (152)
+.++.+++.++.+|... . ..++.|++++ |.++.++..+ |. ++++|+.|++++|.++.+++.+|.++
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~~~--~l~~L~~L~L~~N~l~~i~~~~~~~l 559 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKLEILDLQH-NNLARLWKHANPGGPIYFLK--GLSHLHILNLESNGFDEIPVEVFKDL 559 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCGGGGSTTSTTSCCCTTT--TCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CEEECCCCCCCcCChhhhccccccCEEeCCC-CCccccchhhccCCcchhhc--CCCCCCEEECCCCCCCCCCHHHcccc
Confidence 46777777777776542 2 5677777777 7777664332 45 56777777777777777777777778
Q ss_pred CcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 115 GILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 115 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
++|+.|++++|+++.++++.|.++++|+.|+++++
T Consensus 560 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC
Confidence 88888888888888777777777777777777654
No 76
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=1.1e-11 Score=83.68 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=70.9
Q ss_pred EEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEe
Q psy17693 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYF 146 (152)
Q Consensus 67 ~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 146 (152)
+.+++++ |.+..+|...+ .+|+.|++++|.++.+.+..|.++++|+.|+|++|+|+.++++.|.++++|++|+|
T Consensus 15 ~~l~~~~-n~l~~iP~~~~-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGIP-----TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCS-SCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCC-CCCCccCCCcC-----CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 5789999 99999987532 57999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q psy17693 147 RES 149 (152)
Q Consensus 147 ~~~ 149 (152)
+++
T Consensus 89 ~~N 91 (174)
T 2r9u_A 89 NDN 91 (174)
T ss_dssp CSS
T ss_pred CCC
Confidence 875
No 77
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.27 E-value=7.4e-12 Score=83.66 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=87.0
Q ss_pred cceEEecCCCCC--CCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEE
Q psy17693 45 RKGAACNNTGLS--AIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIEL 120 (152)
Q Consensus 45 ~~~~~c~~~~l~--~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L 120 (152)
.+.++.++..++ .+|..+. ..++.|++++ |.++.+ ..+. .+++|+.|++++|.++...+..+..+++|+.|
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~-n~l~~~--~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLIN-VGLISV--SNLP--KLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEES-SCCCCC--SSCC--CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcC-CCCCCh--hhhc--cCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 357888888888 8887654 7899999999 999988 5677 78999999999999999767778789999999
Q ss_pred eCCCCCCCccCc-chhccCccCcEEEeecC
Q psy17693 121 DLTKNRIHTLHP-DACGLCRSMLFFYFRES 149 (152)
Q Consensus 121 ~L~~N~l~~l~~-~~~~~l~~L~~L~L~~~ 149 (152)
++++|+++.++. ..+.++++|++|+++++
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence 999999999864 67899999999999875
No 78
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.27 E-value=1.8e-11 Score=89.01 Aligned_cols=82 Identities=23% Similarity=0.325 Sum_probs=42.4
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCc-cCc
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCR-SML 142 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~-~L~ 142 (152)
++++.|++++ |.++.+++..|. .+++|+.|++++|.++.+++..|..+++|+.|++++|+++...+..+..++ +|+
T Consensus 175 ~~L~~L~Ls~-n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 251 (306)
T 2z66_A 175 RNLTFLDLSQ-CQLEQLSPTAFN--SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251 (306)
T ss_dssp TTCCEEECTT-SCCCEECTTTTT--TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCC
T ss_pred cCCCEEECCC-CCcCCcCHHHhc--CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCC
Confidence 3455555555 555555444444 445555555555555555544455555555555555555555544444442 455
Q ss_pred EEEeec
Q psy17693 143 FFYFRE 148 (152)
Q Consensus 143 ~L~L~~ 148 (152)
+|++++
T Consensus 252 ~L~L~~ 257 (306)
T 2z66_A 252 FLNLTQ 257 (306)
T ss_dssp EEECTT
T ss_pred EEEccC
Confidence 555544
No 79
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=2.7e-12 Score=84.17 Aligned_cols=100 Identities=21% Similarity=0.209 Sum_probs=84.7
Q ss_pred cceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecC-cccccCCCcCcEEe
Q psy17693 45 RKGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID-PDAFSGLGILIELD 121 (152)
Q Consensus 45 ~~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~-~~~f~~l~~L~~L~ 121 (152)
-+.++.+++.++.+ ..+. +.++.|++++ |.+....+..+. .+++|+.|++++|.++.++ +..|..+++|+.|+
T Consensus 44 L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~--~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 44 LEFLSTINVGLTSI-ANLPKLNKLKKLELSD-NRVSGGLEVLAE--KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp CCEEECTTSCCCCC-TTCCCCTTCCEEECCS-SCCCSCTHHHHH--HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred CcEEECcCCCCCCc-hhhhcCCCCCEEECCC-CcccchHHHHhh--hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence 35788888888887 3443 7899999999 999985555565 5899999999999999874 36789999999999
Q ss_pred CCCCCCCccCc---chhccCccCcEEEeec
Q psy17693 122 LTKNRIHTLHP---DACGLCRSMLFFYFRE 148 (152)
Q Consensus 122 L~~N~l~~l~~---~~~~~l~~L~~L~L~~ 148 (152)
+++|+++.+++ ..+..+++|+.|++++
T Consensus 120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 120 LFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999987 6899999999999875
No 80
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.26 E-value=4e-11 Score=94.06 Aligned_cols=99 Identities=19% Similarity=0.216 Sum_probs=88.3
Q ss_pred cceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEe
Q psy17693 45 RKGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELD 121 (152)
Q Consensus 45 ~~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~ 121 (152)
.+.++.+++.++.+|. .+. +++++|++++ |.++.+++.+|. ++++|+.|++++|.++.++.. .+++|++|+
T Consensus 54 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~ 127 (562)
T 3a79_B 54 TKALSLSQNSISELRMPDISFLSELRVLRLSH-NRIRSLDFHVFL--FNQDLEYLDVSHNRLQNISCC---PMASLRHLD 127 (562)
T ss_dssp CCEEECCSSCCCCCCGGGTTTCTTCCEEECCS-CCCCEECTTTTT--TCTTCCEEECTTSCCCEECSC---CCTTCSEEE
T ss_pred cCEEECCCCCccccChhhhccCCCccEEECCC-CCCCcCCHHHhC--CCCCCCEEECCCCcCCccCcc---ccccCCEEE
Confidence 3578888999998874 343 7899999999 999999999999 899999999999999999876 799999999
Q ss_pred CCCCCCCccC-cchhccCccCcEEEeecC
Q psy17693 122 LTKNRIHTLH-PDACGLCRSMLFFYFRES 149 (152)
Q Consensus 122 L~~N~l~~l~-~~~~~~l~~L~~L~L~~~ 149 (152)
+++|+++.++ ++.|.++++|++|+++++
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred CCCCCccccCchHhhcccCcccEEecCCC
Confidence 9999999987 478999999999999875
No 81
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.25 E-value=2.6e-11 Score=83.13 Aligned_cols=96 Identities=16% Similarity=0.168 Sum_probs=47.7
Q ss_pred eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693 47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~ 124 (152)
.++.++.+++.+| ++. ++++.|++++ |.++.++ .+. .+++|+.|++++|.++...+..|..+++|+.|++++
T Consensus 48 ~L~l~~n~i~~l~-~l~~l~~L~~L~l~~-n~~~~~~--~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 48 YITLANINVTDLT-GIEYAHNIKDLTINN-IHATNYN--PIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp EEEEESSCCSCCT-TGGGCTTCSEEEEES-CCCSCCG--GGT--TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred EEeccCCCccChH-HHhcCCCCCEEEccC-CCCCcch--hhh--cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 5566666666555 222 4555555555 5444332 233 345555555555555543344445555555555555
Q ss_pred CCCCccCcchhccCccCcEEEeec
Q psy17693 125 NRIHTLHPDACGLCRSMLFFYFRE 148 (152)
Q Consensus 125 N~l~~l~~~~~~~l~~L~~L~L~~ 148 (152)
|+++...+..|.++++|++|++++
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~ 145 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSY 145 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCS
T ss_pred CccCcHhHHHHhhCCCCCEEEccC
Confidence 555544344444555555555544
No 82
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=2.7e-11 Score=89.61 Aligned_cols=77 Identities=18% Similarity=0.301 Sum_probs=71.4
Q ss_pred EEEecCCC-cccccCCCcccccCCCcccEEEccC-CcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEE
Q psy17693 68 YLDLGKCN-VIFCFPADAFRSTGLVNLHNLLLKD-CNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFY 145 (152)
Q Consensus 68 ~L~l~~~n-~i~~i~~~~f~~~~l~~L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 145 (152)
.++.++ + .++.+|. +. .+.+|+.|++++ |.++.+++.+|.++++|+.|+|++|+|+.++++.|.++++|+.|+
T Consensus 12 ~v~~~~-~n~l~~ip~--l~--~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTR-DGALDSLHH--LP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CEECCS-SCCCTTTTT--SC--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred EEEcCC-CCCCCccCC--CC--CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 468888 7 8999998 77 788999999996 999999999999999999999999999999999999999999999
Q ss_pred eecC
Q psy17693 146 FRES 149 (152)
Q Consensus 146 L~~~ 149 (152)
|+++
T Consensus 87 l~~N 90 (347)
T 2ifg_A 87 LSFN 90 (347)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 9875
No 83
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=3.5e-11 Score=88.66 Aligned_cols=96 Identities=23% Similarity=0.193 Sum_probs=82.0
Q ss_pred ceEEecCCCCCCCCCCCC---CCcEEEEecCCCcccccCCCcccccCCCccc-EEEccCCcCeecCcccccCCCcCcEEe
Q psy17693 46 KGAACNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLH-NLLLKDCNITDIDPDAFSGLGILIELD 121 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~---~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~-~L~l~~n~l~~i~~~~f~~l~~L~~L~ 121 (152)
+.++..+++++.||+... .+++.+++.. | ++.|+..+|. ++.+|+ .+++.+ .++.|++++|.++++|+.++
T Consensus 229 ~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~-n-i~~I~~~aF~--~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPH-N-LKTIGQRVFS--NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp CEEECTTBCCCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTT--TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred eEEECCCCCcceecHhhhhCCCCCCEEECCc-c-cceehHHHhh--CChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 467777777888887544 5788899988 7 8889999998 888898 999988 88899999999999999999
Q ss_pred CCCCCCCccCcchhccCccCcEEEe
Q psy17693 122 LTKNRIHTLHPDACGLCRSMLFFYF 146 (152)
Q Consensus 122 L~~N~l~~l~~~~~~~l~~L~~L~L 146 (152)
+++|+++.+++++|.++++|+.++.
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred eCCCccCccchhhhcCCcchhhhcc
Confidence 9899999999999999999988874
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.22 E-value=1.1e-11 Score=98.69 Aligned_cols=89 Identities=20% Similarity=0.275 Sum_probs=69.8
Q ss_pred CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111 (152)
Q Consensus 32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f 111 (152)
.||..|.|... ..+.++|++++++.+|..++++++.|++++ |.++.++. . +++|+.|++++|.++.++.
T Consensus 30 ~~~~~~~c~~~-~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~-N~l~~lp~---~---l~~L~~L~Ls~N~l~~lp~--- 98 (622)
T 3g06_A 30 VVQKMRACLNN-GNAVLNVGESGLTTLPDCLPAHITTLVIPD-NNLTSLPA---L---PPELRTLEVSGNQLTSLPV--- 98 (622)
T ss_dssp HHHHHHHHHHH-CCCEEECCSSCCSCCCSCCCTTCSEEEECS-CCCSCCCC---C---CTTCCEEEECSCCCSCCCC---
T ss_pred cCcccccccCC-CCcEEEecCCCcCccChhhCCCCcEEEecC-CCCCCCCC---c---CCCCCEEEcCCCcCCcCCC---
Confidence 46777888643 246899999999999998999999999999 99998876 2 5678888888888887765
Q ss_pred cCCCcCcEEeCCCCCCCccCc
Q psy17693 112 SGLGILIELDLTKNRIHTLHP 132 (152)
Q Consensus 112 ~~l~~L~~L~L~~N~l~~l~~ 132 (152)
.+++|++|++++|+++.++.
T Consensus 99 -~l~~L~~L~Ls~N~l~~l~~ 118 (622)
T 3g06_A 99 -LPPGLLELSIFSNPLTHLPA 118 (622)
T ss_dssp -CCTTCCEEEECSCCCCCCCC
T ss_pred -CCCCCCEEECcCCcCCCCCC
Confidence 45667777777777766654
No 85
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.21 E-value=3e-11 Score=88.48 Aligned_cols=101 Identities=22% Similarity=0.319 Sum_probs=74.1
Q ss_pred ceEEecCCCCC---CCCCCCC--CCcEEEEec-CCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcE
Q psy17693 46 KGAACNNTGLS---AIPRGLS--KDVQYLDLG-KCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIE 119 (152)
Q Consensus 46 ~~~~c~~~~l~---~iP~~~~--~~l~~L~l~-~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~ 119 (152)
+.++.++.++. .+|+.+. +.+++|+++ . |.+....+..|. .+++|+.|++++|.++...+..|..+++|++
T Consensus 53 ~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~-n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI-NNLVGPIPPAIA--KLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEE-TTEESCCCGGGG--GCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred EEEECCCCCccCCcccChhHhCCCCCCeeeCCCC-CcccccCChhHh--cCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 34555666666 3665444 678888888 6 677755566676 6788888888888888666777888888888
Q ss_pred EeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 120 LDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 120 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
|++++|+++...+..|.++++|++|+++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 888888888666667788888888887754
No 86
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.19 E-value=1.4e-11 Score=99.66 Aligned_cols=98 Identities=20% Similarity=0.196 Sum_probs=81.7
Q ss_pred ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693 46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~ 123 (152)
+.++.+++.+..+|..+. ..++.|++++ |.++.++. .|. ++++|+.|++++|.++.+ |..|..+++|++|+|+
T Consensus 227 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~-N~l~~lp~-~~~--~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 227 HALDLSNLQIFNISANIFKYDFLTRLYLNG-NSLTELPA-EIK--NLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFF 301 (727)
T ss_dssp CEEECTTSCCSCCCGGGGGCCSCSCCBCTT-SCCSCCCG-GGG--GGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECC
T ss_pred cEEECCCCCCCCCChhhcCCCCCCEEEeeC-CcCcccCh-hhh--CCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECC
Confidence 468888888888887554 6788899999 99987764 466 688999999999999977 5568889999999999
Q ss_pred CCCCCccCcchhccCccCcEEEeecC
Q psy17693 124 KNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 124 ~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+|.|+.++.. |.++++|++|+|+++
T Consensus 302 ~N~l~~lp~~-~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 302 DNMVTTLPWE-FGNLCNLQFLGVEGN 326 (727)
T ss_dssp SSCCCCCCSS-TTSCTTCCCEECTTS
T ss_pred CCCCCccChh-hhcCCCccEEeCCCC
Confidence 9999988766 888999999999875
No 87
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.19 E-value=6.2e-11 Score=87.43 Aligned_cols=99 Identities=17% Similarity=0.216 Sum_probs=64.8
Q ss_pred eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693 47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~ 124 (152)
.++.+++.++.+|..+. .+++.|++++ |.+..+++. +. .+++|+.|++++|.+....+..|..+++|+.|++++
T Consensus 187 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 187 SLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IH--HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp EEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GG--GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred EEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hc--cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 45555566666665443 5677777777 777766553 55 566777777777766666666677777777777777
Q ss_pred CCCCccCcchhccCccCcEEEeecC
Q psy17693 125 NRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 125 N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
|++.+..+..|.++++|++|++++.
T Consensus 263 n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 263 CSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred CCchhhcchhhhcCCCCCEEeCCCC
Confidence 6655555555677777777777653
No 88
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.19 E-value=1.1e-10 Score=95.70 Aligned_cols=102 Identities=23% Similarity=0.293 Sum_probs=89.2
Q ss_pred ceEEecCCCCCCCCCC-CC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693 46 KGAACNNTGLSAIPRG-LS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL 122 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~-~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L 122 (152)
+.++.+++.+..++.. +. ++++.|++++ |.+..+.+.+|. ++++|+.|++++|.++.+.+.+|.++++|+.|++
T Consensus 269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAY-NKINKIADEAFY--GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp CEEECTTCCCCEECSCCSSSCCCCCEEEEES-CCCCEECTTTTT--TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred cEEECCCCcccccChhhhhcCCCCCEEECCC-CcCCCCChHHhc--CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 4677777777766543 22 6889999999 999999999998 8999999999999999999999999999999999
Q ss_pred CCCCCCccCcchhccCccCcEEEeecCC
Q psy17693 123 TKNRIHTLHPDACGLCRSMLFFYFREST 150 (152)
Q Consensus 123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~~ 150 (152)
++|+++.++++.|.++++|+.|+++++.
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 9999999999999999999999998753
No 89
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.14 E-value=1e-10 Score=90.75 Aligned_cols=99 Identities=17% Similarity=0.131 Sum_probs=86.7
Q ss_pred cceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEe
Q psy17693 45 RKGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELD 121 (152)
Q Consensus 45 ~~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~ 121 (152)
.+.++.+++.++.+|. .+. ..+++|++++ |.++.+.+..|. ++++|+.|++++|.++.++.. .+++|++|+
T Consensus 23 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~ 96 (520)
T 2z7x_B 23 TTILNISQNYISELWTSDILSLSKLRILIISH-NRIQYLDISVFK--FNQELEYLDLSHNKLVKISCH---PTVNLKHLD 96 (520)
T ss_dssp CSEEECCSSCCCCCCHHHHTTCTTCCEEECCS-SCCCEEEGGGGT--TCTTCCEEECCSSCCCEEECC---CCCCCSEEE
T ss_pred ccEEECCCCcccccChhhccccccccEEecCC-CccCCcChHHhh--cccCCCEEecCCCceeecCcc---ccCCccEEe
Confidence 4588999999988873 222 7899999999 999999888898 899999999999999998775 799999999
Q ss_pred CCCCCCCccC-cchhccCccCcEEEeecC
Q psy17693 122 LTKNRIHTLH-PDACGLCRSMLFFYFRES 149 (152)
Q Consensus 122 L~~N~l~~l~-~~~~~~l~~L~~L~L~~~ 149 (152)
+++|+++.++ ++.|+++++|++|+++++
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred ccCCccccccchhhhccCCcceEEEecCc
Confidence 9999999864 578999999999999875
No 90
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=9.7e-11 Score=92.43 Aligned_cols=97 Identities=16% Similarity=0.159 Sum_probs=85.2
Q ss_pred cceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecC-cccccCCCcCcEEe
Q psy17693 45 RKGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID-PDAFSGLGILIELD 121 (152)
Q Consensus 45 ~~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~-~~~f~~l~~L~~L~ 121 (152)
-+.++.+++.++.+|..+. ..++.|++++ |.++.++ .+. ++++|+.|++++|.++.+. |..|..+++|+.|+
T Consensus 465 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp--~l~--~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 465 VTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD--GVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp CCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG--GGT--TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred CcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc--ccC--CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 3579999999999998665 7899999999 9999987 677 7999999999999999997 88899999999999
Q ss_pred CCCCCCCccCcc---hhccCccCcEEEe
Q psy17693 122 LTKNRIHTLHPD---ACGLCRSMLFFYF 146 (152)
Q Consensus 122 L~~N~l~~l~~~---~~~~l~~L~~L~L 146 (152)
|++|+++.+++. .+..+++|+.|++
T Consensus 540 L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 540 LQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999998764 3456889999864
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.13 E-value=2.2e-10 Score=78.49 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=58.1
Q ss_pred eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693 47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~ 124 (152)
.++.++..++.++ .+. +.+++|++++ |.++...+..+. .+++|+.|++++|.++...+..|..+++|+.|++++
T Consensus 70 ~L~l~~n~~~~~~-~l~~l~~L~~L~l~~-n~l~~~~~~~l~--~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 145 (197)
T 4ezg_A 70 DLTINNIHATNYN-PISGLSNLERLRIMG-KDVTSDKIPNLS--GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145 (197)
T ss_dssp EEEEESCCCSCCG-GGTTCTTCCEEEEEC-TTCBGGGSCCCT--TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCS
T ss_pred EEEccCCCCCcch-hhhcCCCCCEEEeEC-CccCcccChhhc--CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccC
Confidence 4555555555444 222 5666777777 666665555565 566677777777666665555566666666666666
Q ss_pred CC-CCccCcchhccCccCcEEEeec
Q psy17693 125 NR-IHTLHPDACGLCRSMLFFYFRE 148 (152)
Q Consensus 125 N~-l~~l~~~~~~~l~~L~~L~L~~ 148 (152)
|+ ++.++ .+.++++|++|++++
T Consensus 146 n~~i~~~~--~l~~l~~L~~L~l~~ 168 (197)
T 4ezg_A 146 NGAITDIM--PLKTLPELKSLNIQF 168 (197)
T ss_dssp CTBCCCCG--GGGGCSSCCEEECTT
T ss_pred CCCccccH--hhcCCCCCCEEECCC
Confidence 65 66553 356666666666654
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.13 E-value=3.1e-10 Score=81.29 Aligned_cols=93 Identities=19% Similarity=0.125 Sum_probs=53.2
Q ss_pred eEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCC
Q psy17693 47 GAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~ 126 (152)
.++.+++.++.+|......++.|++++ |.++.++ .+. .+++|+.|++++|.++.++ .+..+++|+.|++++|+
T Consensus 89 ~L~L~~N~l~~l~~~~~~~L~~L~L~~-N~l~~~~--~l~--~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 89 ELSVNRNRLKNLNGIPSACLSRLFLDN-NELRDTD--SLI--HLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp EEECCSSCCSCCTTCCCSSCCEEECCS-SCCSBSG--GGT--TCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSC
T ss_pred EEECCCCccCCcCccccCcccEEEccC-CccCCCh--hhc--CcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCc
Confidence 344444444444432224555555555 5555543 244 4566666666666666653 35666666666666666
Q ss_pred CCccCcchhccCccCcEEEeec
Q psy17693 127 IHTLHPDACGLCRSMLFFYFRE 148 (152)
Q Consensus 127 l~~l~~~~~~~l~~L~~L~L~~ 148 (152)
++.+ ..+..+++|+.|++++
T Consensus 162 i~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 162 ITNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCBC--TTSTTCCCCCEEEEEE
T ss_pred Ccch--HHhccCCCCCEEeCCC
Confidence 6666 4456666666666654
No 93
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.11 E-value=1.8e-10 Score=84.87 Aligned_cols=81 Identities=20% Similarity=0.257 Sum_probs=76.5
Q ss_pred CCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCc-EEeCCCCCCCccCcchhccCccC
Q psy17693 63 SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILI-ELDLTKNRIHTLHPDACGLCRSM 141 (152)
Q Consensus 63 ~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~-~L~L~~N~l~~l~~~~~~~l~~L 141 (152)
..+++.+++++ |.++.|+..+|. ++.+|+.+++.+| +..|++++|.++.+|+ .+++.+ .++.+++++|.++.+|
T Consensus 225 ~~~L~~l~L~~-n~i~~I~~~aF~--~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISK-TNATTIPDFTFA--QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTT-BCCCEECTTTTT--TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCC-CCcceecHhhhh--CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence 36899999999 999999999999 8999999999998 9999999999999999 999988 8999999999999999
Q ss_pred cEEEeec
Q psy17693 142 LFFYFRE 148 (152)
Q Consensus 142 ~~L~L~~ 148 (152)
+.+++++
T Consensus 300 ~~l~l~~ 306 (329)
T 3sb4_A 300 RYVLATG 306 (329)
T ss_dssp EEEEECS
T ss_pred CEEEeCC
Confidence 9999954
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.11 E-value=3.3e-10 Score=81.11 Aligned_cols=96 Identities=15% Similarity=0.297 Sum_probs=55.6
Q ss_pred ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcc--------------
Q psy17693 46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD-------------- 109 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~-------------- 109 (152)
+.+++++.+++.+| .+. .+++.|++++ |.++.+++ +. .+++|+.|++++|.++.+++.
T Consensus 44 ~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~-N~i~~~~~--l~--~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N~ 117 (263)
T 1xeu_A 44 QNFNGDNSNIQSLA-GMQFFTNLKELHLSH-NQISDLSP--LK--DLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNE 117 (263)
T ss_dssp SEEECTTSCCCCCT-TGGGCTTCCEEECCS-SCCCCCGG--GT--TCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSSC
T ss_pred cEEECcCCCcccch-HHhhCCCCCEEECCC-CccCCChh--hc--cCCCCCEEECCCCccCCcCccccCcccEEEccCCc
Confidence 35666666666665 222 5566666666 66666554 44 455555555555555554331
Q ss_pred -----cccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 110 -----AFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 110 -----~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
.|..+++|+.|++++|+++.++ .+..+++|++|+++++
T Consensus 118 l~~~~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 118 LRDTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CSBSGGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTS
T ss_pred cCCChhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCC
Confidence 2555666666666666666653 3566666666666553
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.10 E-value=2.8e-10 Score=84.46 Aligned_cols=102 Identities=24% Similarity=0.273 Sum_probs=86.5
Q ss_pred cceEEecCCCCCCCCCCC-C--CCcEEEEecCCCcc-cccCCCcccccCCCcccE-EEccCCcCeecCcccccCCCcCcE
Q psy17693 45 RKGAACNNTGLSAIPRGL-S--KDVQYLDLGKCNVI-FCFPADAFRSTGLVNLHN-LLLKDCNITDIDPDAFSGLGILIE 119 (152)
Q Consensus 45 ~~~~~c~~~~l~~iP~~~-~--~~l~~L~l~~~n~i-~~i~~~~f~~~~l~~L~~-L~l~~n~l~~i~~~~f~~l~~L~~ 119 (152)
.+.++.+++.++.+|.+. . .++++|++++ |.+ +.++.++|. +++++.. +.+..|+++.+++++|..+++|++
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~i~~~i~~~~f~--~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ-NDVLEVIEADVFS--NLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTCTTCCEEEEEC-CTTCCEECTTSBC--SCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCEEEccCCcCCCcCHHHHcCCCCCCEEECcC-CCCCCccChhHhh--cchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 457889999999999753 3 7899999999 987 568888998 8888765 666789999999999999999999
Q ss_pred EeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 120 LDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 120 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
|++++|+++.+++..+.+..++..+++.+.
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESC
T ss_pred ccccccccccCCchhhcccchhhhhhhccc
Confidence 999999999998887777777888887653
No 96
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.09 E-value=1.9e-10 Score=84.27 Aligned_cols=81 Identities=25% Similarity=0.299 Sum_probs=47.3
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF 143 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 143 (152)
..++.|++++ |.+..+++..+.. .+++|+.|++++|.++.++... .+++|+.|++++|+++.+++. |..+++|++
T Consensus 144 ~~L~~L~Ls~-N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~ 218 (317)
T 3o53_A 144 SRVQYLDLKL-NEIDTVNFAELAA-SSDTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTW 218 (317)
T ss_dssp SSEEEEECTT-SCCCEEEGGGGGG-GTTTCCEEECTTSCCCEEECCC--CCTTCCEEECCSSCCCEECGG-GGGGTTCSE
T ss_pred CCCCEEECCC-CCCCcccHHHHhh-ccCcCCEEECCCCcCccccccc--ccccCCEEECCCCcCCcchhh-hcccCcccE
Confidence 4455555555 5555544443310 2455666666666665553322 366677777777777777665 666777777
Q ss_pred EEeecC
Q psy17693 144 FYFRES 149 (152)
Q Consensus 144 L~L~~~ 149 (152)
|+++++
T Consensus 219 L~L~~N 224 (317)
T 3o53_A 219 ISLRNN 224 (317)
T ss_dssp EECTTS
T ss_pred EECcCC
Confidence 777654
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.08 E-value=3.5e-10 Score=89.29 Aligned_cols=90 Identities=19% Similarity=0.297 Sum_probs=66.9
Q ss_pred cceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693 45 RKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124 (152)
Q Consensus 45 ~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~ 124 (152)
...+++++++++.+|..++++++.|++++ |.++.++ . .+++|+.|++++|.++.++. |.. +|+.|++++
T Consensus 61 L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~-N~l~~ip-~-----~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 61 FSELQLNRLNLSSLPDNLPPQITVLEITQ-NALISLP-E-----LPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN 129 (571)
T ss_dssp CSEEECCSSCCSCCCSCCCTTCSEEECCS-SCCSCCC-C-----CCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred ccEEEeCCCCCCccCHhHcCCCCEEECcC-CCCcccc-c-----ccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence 45799999999999988888899999999 9988887 2 35678888888888877655 443 677777777
Q ss_pred CCCCccCcchhccCccCcEEEeecC
Q psy17693 125 NRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 125 N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
|+|+.++. .+++|+.|+++++
T Consensus 130 N~l~~lp~----~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 130 NQLTMLPE----LPALLEYINADNN 150 (571)
T ss_dssp SCCSCCCC----CCTTCCEEECCSS
T ss_pred CcCCCCCC----cCccccEEeCCCC
Confidence 77776655 3555666666543
No 98
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.08 E-value=6.5e-10 Score=81.94 Aligned_cols=101 Identities=23% Similarity=0.193 Sum_probs=87.2
Q ss_pred ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693 46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~ 123 (152)
+.++.+++.++.+|..+. +.++.|++++ |.+....+..|. ++++|+.|++++|.+....+..|..+++|+.|+++
T Consensus 209 ~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~-n~~~~~~p~~~~--~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 209 KSLKIRNSPLSALGPAIHHLPKLEELDLRG-CTALRNYPPIFG--GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp CEEEEESSCCCCCCGGGGGCTTCCEEECTT-CTTCCBCCCCTT--CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred CEEEccCCCCCcCchhhccCCCCCEEECcC-CcchhhhHHHhc--CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 478888889998887654 7899999999 888877777888 89999999999998777777789999999999999
Q ss_pred CCCCCccCcchhccCccCcEEEeecC
Q psy17693 124 KNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 124 ~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+|++.+..|..+.++++|+.+++...
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCchhhccHHHhhccCceEEeCCHH
Confidence 99877766778999999999988754
No 99
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.08 E-value=5.1e-10 Score=81.78 Aligned_cols=91 Identities=22% Similarity=0.371 Sum_probs=42.7
Q ss_pred eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693 47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~ 124 (152)
.+++++.+++.+|. +. ++++.|++++ |.+..+++ +. .+++|+.|++++|.++.++ .|..+++|+.|++++
T Consensus 45 ~L~l~~~~i~~l~~-~~~l~~L~~L~L~~-n~i~~~~~--~~--~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 45 TLSAFGTGVTTIEG-VQYLNNLIGLELKD-NQITDLAP--LK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTS 116 (308)
T ss_dssp EEECTTSCCCCCTT-GGGCTTCCEEECCS-SCCCCCGG--GT--TCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTT
T ss_pred EEEeeCCCccCchh-hhccCCCCEEEccC-CcCCCChh--Hc--cCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCC
Confidence 45555555555542 22 4455555555 55555444 33 4445555555555544442 244444444444444
Q ss_pred CCCCccCcchhccCccCcEEEee
Q psy17693 125 NRIHTLHPDACGLCRSMLFFYFR 147 (152)
Q Consensus 125 N~l~~l~~~~~~~l~~L~~L~L~ 147 (152)
|+++.+++ +.++++|++|+++
T Consensus 117 n~l~~~~~--l~~l~~L~~L~l~ 137 (308)
T 1h6u_A 117 TQITDVTP--LAGLSNLQVLYLD 137 (308)
T ss_dssp SCCCCCGG--GTTCTTCCEEECC
T ss_pred CCCCCchh--hcCCCCCCEEECC
Confidence 44444422 3444444444443
No 100
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.08 E-value=1.5e-10 Score=84.80 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=77.5
Q ss_pred eEEecC-CCCC-CCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693 47 GAACNN-TGLS-AIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL 122 (152)
Q Consensus 47 ~~~c~~-~~l~-~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L 122 (152)
.++.++ +.+. .+|..+. +.+++|++++ |.+....+..|. .+++|+.|++++|.++...+..|..+++|+.|++
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITH-TNVSGAIPDFLS--QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEE-ECCEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcC-CeeCCcCCHHHh--CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 455552 4444 4565444 6889999999 999866666777 7889999999999998777778888999999999
Q ss_pred CCCCCCccCcchhccCc-cCcEEEeecC
Q psy17693 123 TKNRIHTLHPDACGLCR-SMLFFYFRES 149 (152)
Q Consensus 123 ~~N~l~~l~~~~~~~l~-~L~~L~L~~~ 149 (152)
++|+++...+..+..++ +|++|+++++
T Consensus 157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 157 DGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp CSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred cCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 99999855566677777 8888888764
No 101
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.05 E-value=4.5e-10 Score=91.27 Aligned_cols=83 Identities=20% Similarity=0.248 Sum_probs=75.6
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF 143 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 143 (152)
..++.|++++ |.+....+..+. .+++|+.|++++|.++...|..|..+++|+.|+|++|++++..|..|.++++|++
T Consensus 632 ~~L~~LdLs~-N~l~g~ip~~l~--~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 632 GSMMFLDMSY-NMLSGYIPKEIG--SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp BCCCEEECCS-SCCBSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred ccccEEECcC-CcccccCCHHHh--ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 5788999999 999977777788 7999999999999999877888999999999999999999888888999999999
Q ss_pred EEeecC
Q psy17693 144 FYFRES 149 (152)
Q Consensus 144 L~L~~~ 149 (152)
|+++++
T Consensus 709 L~ls~N 714 (768)
T 3rgz_A 709 IDLSNN 714 (768)
T ss_dssp EECCSS
T ss_pred EECcCC
Confidence 999875
No 102
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.05 E-value=7.4e-10 Score=80.95 Aligned_cols=93 Identities=24% Similarity=0.376 Sum_probs=56.5
Q ss_pred ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693 46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~ 123 (152)
+.++.+++.++.+|. +. +.++.|++++ |.++.++ .+. .+++|+.|++++|.++.+++ |..+++|+.|+++
T Consensus 66 ~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~-n~l~~~~--~~~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~ 137 (308)
T 1h6u_A 66 IGLELKDNQITDLAP-LKNLTKITELELSG-NPLKNVS--AIA--GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLD 137 (308)
T ss_dssp CEEECCSSCCCCCGG-GTTCCSCCEEECCS-CCCSCCG--GGT--TCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECC
T ss_pred CEEEccCCcCCCChh-HccCCCCCEEEccC-CcCCCch--hhc--CCCCCCEEECCCCCCCCchh--hcCCCCCCEEECC
Confidence 467777777776664 33 5667777777 6666654 344 56666666666666666543 5566666666666
Q ss_pred CCCCCccCcchhccCccCcEEEeec
Q psy17693 124 KNRIHTLHPDACGLCRSMLFFYFRE 148 (152)
Q Consensus 124 ~N~l~~l~~~~~~~l~~L~~L~L~~ 148 (152)
+|+++.+++ +.++++|+.|++++
T Consensus 138 ~n~l~~~~~--l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 138 LNQITNISP--LAGLTNLQYLSIGN 160 (308)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECCS
T ss_pred CCccCcCcc--ccCCCCccEEEccC
Confidence 666665544 55555566555554
No 103
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.05 E-value=5.3e-10 Score=81.90 Aligned_cols=96 Identities=15% Similarity=0.231 Sum_probs=58.5
Q ss_pred eEEecCCCCCCCCC-CCC---CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693 47 GAACNNTGLSAIPR-GLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL 122 (152)
Q Consensus 47 ~~~c~~~~l~~iP~-~~~---~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L 122 (152)
.++.+++.++.++. .+. ..+++|++++ |.++.++... .+++|+.|++++|.++.+++. |..+++|+.|++
T Consensus 148 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~----~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L 221 (317)
T 3o53_A 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQY-NFIYDVKGQV----VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISL 221 (317)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCCEEECTT-SCCCEEECCC----CCTTCCEEECCSSCCCEECGG-GGGGTTCSEEEC
T ss_pred EEECCCCCCCcccHHHHhhccCcCCEEECCC-CcCccccccc----ccccCCEEECCCCcCCcchhh-hcccCcccEEEC
Confidence 45555555555432 221 5666777777 7666664432 256677777777777766554 666677777777
Q ss_pred CCCCCCccCcchhccCccCcEEEeecC
Q psy17693 123 TKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
++|+++.++.. +..+++|+.|+++++
T Consensus 222 ~~N~l~~l~~~-~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 222 RNNKLVLIEKA-LRFSQNLEHFDLRGN 247 (317)
T ss_dssp TTSCCCEECTT-CCCCTTCCEEECTTC
T ss_pred cCCcccchhhH-hhcCCCCCEEEccCC
Confidence 77777766543 566666777776654
No 104
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.04 E-value=2e-10 Score=84.03 Aligned_cols=101 Identities=13% Similarity=0.049 Sum_probs=58.9
Q ss_pred ceEEecCCCCCCCCCCC-------CCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeec----CcccccCC
Q psy17693 46 KGAACNNTGLSAIPRGL-------SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI----DPDAFSGL 114 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~-------~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i----~~~~f~~l 114 (152)
+.++.+++.++.+|..+ ++++++|++++ |.+..+++..|. ++++|+.|++++|.+... ....|..+
T Consensus 124 ~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVR--VFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp SEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCC--CCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred cEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhc--cCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 35666666666655321 25677777777 777777766666 666777777777764431 11223556
Q ss_pred CcCcEEeCCCCCCCc---cCcchhccCccCcEEEeecC
Q psy17693 115 GILIELDLTKNRIHT---LHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 115 ~~L~~L~L~~N~l~~---l~~~~~~~l~~L~~L~L~~~ 149 (152)
++|+.|++++|+++. ++...|.++++|++|+++++
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence 666666666666663 22344455556666666543
No 105
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.03 E-value=4.6e-10 Score=86.97 Aligned_cols=81 Identities=25% Similarity=0.295 Sum_probs=47.5
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF 143 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 143 (152)
+.++.|++++ |.+..+++..+.. .+++|+.|++++|.++.+++. ..+++|+.|+|++|+++.+++. |.++++|+.
T Consensus 144 ~~L~~L~Ls~-N~l~~~~~~~l~~-~l~~L~~L~Ls~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~ 218 (487)
T 3oja_A 144 SRVQYLDLKL-NEIDTVNFAELAA-SSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTW 218 (487)
T ss_dssp SSEEEEECTT-SCCCEEEGGGGGG-GTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGG-GGGGTTCSE
T ss_pred CCCCEEECCC-CCCCCcChHHHhh-hCCcccEEecCCCcccccccc--ccCCCCCEEECCCCCCCCCCHh-HcCCCCccE
Confidence 4555555555 5555544443320 245566666666665555332 2366777777777777777665 666777777
Q ss_pred EEeecC
Q psy17693 144 FYFRES 149 (152)
Q Consensus 144 L~L~~~ 149 (152)
|+++++
T Consensus 219 L~Ls~N 224 (487)
T 3oja_A 219 ISLRNN 224 (487)
T ss_dssp EECTTS
T ss_pred EEecCC
Confidence 777654
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.03 E-value=1.5e-09 Score=78.73 Aligned_cols=75 Identities=21% Similarity=0.299 Sum_probs=34.9
Q ss_pred CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEE
Q psy17693 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFF 144 (152)
Q Consensus 65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 144 (152)
.++.|++++ |.++.++. +. .+++|+.|++++|.++.+ ..+..+++|+.|++++|+++.+ ..+.++++|++|
T Consensus 91 ~L~~L~l~~-n~l~~~~~--l~--~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 161 (291)
T 1h6t_A 91 NLGWLFLDE-NKVKDLSS--LK--DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL 161 (291)
T ss_dssp TCCEEECCS-SCCCCGGG--GT--TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred CCCEEECCC-CcCCCChh--hc--cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEE
Confidence 344444444 44444332 33 344444444444444444 1244455555555555555554 234555555555
Q ss_pred Eeec
Q psy17693 145 YFRE 148 (152)
Q Consensus 145 ~L~~ 148 (152)
++++
T Consensus 162 ~L~~ 165 (291)
T 1h6t_A 162 SLED 165 (291)
T ss_dssp ECCS
T ss_pred EccC
Confidence 5544
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.01 E-value=1.5e-09 Score=78.74 Aligned_cols=92 Identities=21% Similarity=0.287 Sum_probs=45.7
Q ss_pred eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693 47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~ 124 (152)
.+++++..+..+|. +. ++++.|++++ |.++.+++ +. .+++|+.|++++|.++.++. +..+++|+.|++++
T Consensus 50 ~L~l~~~~i~~~~~-~~~l~~L~~L~L~~-n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 50 QIIANNSDIKSVQG-IQYLPNVTKLFLNG-NKLTDIKP--LA--NLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEH 121 (291)
T ss_dssp EEECTTSCCCCCTT-GGGCTTCCEEECCS-SCCCCCGG--GT--TCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTT
T ss_pred EEEccCCCcccChh-HhcCCCCCEEEccC-CccCCCcc--cc--cCCCCCEEECCCCcCCCChh--hccCCCCCEEECCC
Confidence 44555555544442 21 4455555555 55555444 33 45555555555555554432 44555555555555
Q ss_pred CCCCccCcchhccCccCcEEEeec
Q psy17693 125 NRIHTLHPDACGLCRSMLFFYFRE 148 (152)
Q Consensus 125 N~l~~l~~~~~~~l~~L~~L~L~~ 148 (152)
|+++.+ ..+..+++|+.|++++
T Consensus 122 n~i~~~--~~l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 122 NGISDI--NGLVHLPQLESLYLGN 143 (291)
T ss_dssp SCCCCC--GGGGGCTTCCEEECCS
T ss_pred CcCCCC--hhhcCCCCCCEEEccC
Confidence 555554 2244555555555544
No 108
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.00 E-value=2.8e-10 Score=83.19 Aligned_cols=81 Identities=12% Similarity=0.085 Sum_probs=54.2
Q ss_pred CcEEEEecCCCcccc-cCCCcc-cccCCCcccEEEccCCcCeecCcccccCC-----CcCcEEeCCCCCCCccCcchhcc
Q psy17693 65 DVQYLDLGKCNVIFC-FPADAF-RSTGLVNLHNLLLKDCNITDIDPDAFSGL-----GILIELDLTKNRIHTLHPDACGL 137 (152)
Q Consensus 65 ~l~~L~l~~~n~i~~-i~~~~f-~~~~l~~L~~L~l~~n~l~~i~~~~f~~l-----~~L~~L~L~~N~l~~l~~~~~~~ 137 (152)
.+++|++++ |.++. ++...| . .+++|+.|++++|.++.+ +..|..+ ++|++|++++|+++.++++.|.+
T Consensus 96 ~L~~L~L~~-n~l~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 96 GLQELTLEN-LEVTGTAPPPLLEA--TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp CCCEEEEEE-EBCBSCCCCCSSSC--CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CccEEEccC-CcccchhHHHHHHh--cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 466777777 77764 333322 4 567777777777777766 5555555 67777777777777777677777
Q ss_pred CccCcEEEeecC
Q psy17693 138 CRSMLFFYFRES 149 (152)
Q Consensus 138 l~~L~~L~L~~~ 149 (152)
+++|++|+++++
T Consensus 172 l~~L~~L~Ls~N 183 (312)
T 1wwl_A 172 FPALSTLDLSDN 183 (312)
T ss_dssp CSSCCEEECCSC
T ss_pred CCCCCEEECCCC
Confidence 777777777654
No 109
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.99 E-value=1.1e-09 Score=88.94 Aligned_cols=82 Identities=23% Similarity=0.257 Sum_probs=50.4
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF 143 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 143 (152)
+.++.|++++ |.+....+..+. ++++|+.|++++|.++...|..|..+++|+.|++++|+++...+..+.++++|+.
T Consensus 466 ~~L~~L~L~~-N~l~~~~p~~l~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 466 KTLETLILDF-NDLTGEIPSGLS--NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542 (768)
T ss_dssp TTCCEEECCS-SCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred CCceEEEecC-CcccCcCCHHHh--cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence 4556666666 666555555555 5666666666666666555555666666666666666666555555666666666
Q ss_pred EEeec
Q psy17693 144 FYFRE 148 (152)
Q Consensus 144 L~L~~ 148 (152)
|++++
T Consensus 543 L~Ls~ 547 (768)
T 3rgz_A 543 LDLNT 547 (768)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 66654
No 110
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.99 E-value=1.7e-09 Score=83.12 Aligned_cols=95 Identities=18% Similarity=0.328 Sum_probs=78.5
Q ss_pred ceEEecCCCCCCCCC-CCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693 46 KGAACNNTGLSAIPR-GLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~-~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~ 124 (152)
+.+++.+.++..+|. ....++++|++++ |.++.+++ +. .+++|+.|++++|.+..+.+ |..+++|++|++++
T Consensus 49 ~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~-n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 49 TTLQADRLGIKSIDGVEYLNNLTQINFSN-NQLTDITP--LK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 121 (466)
T ss_dssp CEEECCSSCCCCCTTGGGCTTCCEEECCS-SCCCCCGG--GT--TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred cEEecCCCCCccCcchhhhcCCCEEECCC-CccCCchh--hh--ccccCCEEECCCCccccChh--hcCCCCCCEEECCC
Confidence 478888888888885 1237899999999 99988876 66 78899999999999888866 88899999999999
Q ss_pred CCCCccCcchhccCccCcEEEeecC
Q psy17693 125 NRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 125 N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
|+++.+++ +.++++|++|+++++
T Consensus 122 n~l~~~~~--~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 122 NQITDIDP--LKNLTNLNRLELSSN 144 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEEEEEE
T ss_pred CCCCCChH--HcCCCCCCEEECCCC
Confidence 99988865 788888888888753
No 111
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.98 E-value=8e-10 Score=81.49 Aligned_cols=96 Identities=19% Similarity=0.290 Sum_probs=54.7
Q ss_pred eEEecCCCCCCCCC-CCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCC
Q psy17693 47 GAACNNTGLSAIPR-GLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125 (152)
Q Consensus 47 ~~~c~~~~l~~iP~-~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N 125 (152)
.++.++..++.+|. .-.+.++.|++++ |.+..++ .+. .+++|+.|++++|.++.+ ..|..+++|+.|++++|
T Consensus 225 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~-n~l~~~~--~~~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 225 SLKIGNNKITDLSPLANLSQLTWLEIGT-NQISDIN--AVK--DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp EEECCSSCCCCCGGGTTCTTCCEEECCS-SCCCCCG--GGT--TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred EEEccCCccCCCcchhcCCCCCEEECCC-CccCCCh--hHh--cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCC
Confidence 55666666665553 1115566666666 6665542 244 455666666666666555 23555666666666666
Q ss_pred CCCccCcchhccCccCcEEEeecC
Q psy17693 126 RIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 126 ~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+++..++..|.++++|++|+++++
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCSS
T ss_pred cCCCcChhHhhccccCCEEEccCC
Confidence 666555555666666666666543
No 112
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.98 E-value=2.7e-09 Score=85.11 Aligned_cols=98 Identities=18% Similarity=0.239 Sum_probs=60.2
Q ss_pred ceEEecCCCCCCCCCCC---CCCcEEEEecCCCcccccCCCcccccCCC-------cccEEEccCCcCeecCcccc-cCC
Q psy17693 46 KGAACNNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLV-------NLHNLLLKDCNITDIDPDAF-SGL 114 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~---~~~l~~L~l~~~n~i~~i~~~~f~~~~l~-------~L~~L~l~~n~l~~i~~~~f-~~l 114 (152)
+.++.+++.++.+|..+ -+.++.|++++ |.++.++...|. +.. +|+.|++++|.++.++...+ ..+
T Consensus 436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l 512 (636)
T 4eco_A 436 SSINLSNNQISKFPKELFSTGSPLSSINLMG-NMLTEIPKNSLK--DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512 (636)
T ss_dssp EEEECCSSCCCSCCTHHHHTTCCCSEEECCS-SCCSBCCSSSSE--ETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTC
T ss_pred CEEECcCCccCcCCHHHHccCCCCCEEECCC-CCCCCcCHHHhc--cccccccccCCccEEECcCCcCCccChhhhhccC
Confidence 35666666666666532 25566777777 777666666555 332 66677777776666654433 366
Q ss_pred CcCcEEeCCCCCCCccCcchhccCccCcEEEee
Q psy17693 115 GILIELDLTKNRIHTLHPDACGLCRSMLFFYFR 147 (152)
Q Consensus 115 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 147 (152)
++|+.|++++|+++.++.. +.++++|+.|+++
T Consensus 513 ~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls 544 (636)
T 4eco_A 513 PYLVGIDLSYNSFSKFPTQ-PLNSSTLKGFGIR 544 (636)
T ss_dssp TTCCEEECCSSCCSSCCCG-GGGCSSCCEEECC
T ss_pred CCcCEEECCCCCCCCcChh-hhcCCCCCEEECC
Confidence 6677777777776665433 4456666666664
No 113
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.97 E-value=2e-09 Score=85.87 Aligned_cols=82 Identities=21% Similarity=0.264 Sum_probs=53.0
Q ss_pred CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCC-------cCcEEeCCCCCCCccCcchh-c
Q psy17693 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG-------ILIELDLTKNRIHTLHPDAC-G 136 (152)
Q Consensus 65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~-------~L~~L~L~~N~l~~l~~~~~-~ 136 (152)
.++.|++++ |.++.++...|. .+++|+.|++++|.++.++...|.... +|+.|++++|+++.++...+ .
T Consensus 434 ~L~~L~Ls~-N~l~~lp~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~ 510 (636)
T 4eco_A 434 NVSSINLSN-NQISKFPKELFS--TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510 (636)
T ss_dssp CEEEEECCS-SCCCSCCTHHHH--TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTT
T ss_pred CCCEEECcC-CccCcCCHHHHc--cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhc
Confidence 556666666 666666655555 566677777777777766666555443 67777777777776665543 3
Q ss_pred cCccCcEEEeecC
Q psy17693 137 LCRSMLFFYFRES 149 (152)
Q Consensus 137 ~l~~L~~L~L~~~ 149 (152)
++++|+.|+++++
T Consensus 511 ~l~~L~~L~Ls~N 523 (636)
T 4eco_A 511 TLPYLVGIDLSYN 523 (636)
T ss_dssp TCTTCCEEECCSS
T ss_pred cCCCcCEEECCCC
Confidence 6777777777654
No 114
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.97 E-value=2.5e-09 Score=78.85 Aligned_cols=95 Identities=25% Similarity=0.341 Sum_probs=74.7
Q ss_pred ceEEecCCCCCCCCC-CCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693 46 KGAACNNTGLSAIPR-GLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~-~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~ 124 (152)
+.+++++..+..+|. .-.+++++|++++ |.++.+++ |. .+++|+.|++++|.++.++ +|..+++|++|++++
T Consensus 47 ~~L~l~~~~i~~~~~~~~~~~L~~L~l~~-n~i~~~~~--~~--~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 47 TKLVVAGEKVASIQGIEYLTNLEYLNLNG-NQITDISP--LS--NLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNE 119 (347)
T ss_dssp SEEECCSSCCCCCTTGGGCTTCCEEECCS-SCCCCCGG--GT--TCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECTT
T ss_pred cEEEEeCCccccchhhhhcCCccEEEccC-Cccccchh--hh--cCCcCCEEEccCCcccCch--HHcCCCcCCEEECcC
Confidence 578888888888774 1127888899999 88888776 66 6888999999988888773 488888888888888
Q ss_pred CCCCccCcchhccCccCcEEEeecC
Q psy17693 125 NRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 125 N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
|+++.+++ +.++++|+.|++++.
T Consensus 120 n~i~~~~~--~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 120 DNISDISP--LANLTKMYSLNLGAN 142 (347)
T ss_dssp SCCCCCGG--GTTCTTCCEEECTTC
T ss_pred CcccCchh--hccCCceeEEECCCC
Confidence 88888765 677778888877765
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.96 E-value=3.5e-09 Score=83.63 Aligned_cols=89 Identities=19% Similarity=0.281 Sum_probs=60.5
Q ss_pred cceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693 45 RKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124 (152)
Q Consensus 45 ~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~ 124 (152)
.+.++.+++.++.+| ....+++.|++++ |.++.++. +. + +|+.|++++|.++.+++ .+++|+.|++++
T Consensus 82 L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~-N~l~~ip~--l~--~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 82 ITVLEITQNALISLP-ELPASLEYLDACD-NRLSTLPE--LP--A--SLKHLDVDNNQLTMLPE----LPALLEYINADN 149 (571)
T ss_dssp CSEEECCSSCCSCCC-CCCTTCCEEECCS-SCCSCCCC--CC--T--TCCEEECCSSCCSCCCC----CCTTCCEEECCS
T ss_pred CCEEECcCCCCcccc-cccCCCCEEEccC-CCCCCcch--hh--c--CCCEEECCCCcCCCCCC----cCccccEEeCCC
Confidence 357888888888888 6678888888888 88888776 54 3 67777777777776654 355666666666
Q ss_pred CCCCccCcchhccCccCcEEEeecC
Q psy17693 125 NRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 125 N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
|+|+.++. .+++|+.|+++++
T Consensus 150 N~l~~lp~----~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 150 NQLTMLPE----LPTSLEVLSVRNN 170 (571)
T ss_dssp SCCSCCCC----CCTTCCEEECCSS
T ss_pred CccCcCCC----cCCCcCEEECCCC
Confidence 66666544 3445555555543
No 116
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.95 E-value=3.2e-09 Score=81.68 Aligned_cols=90 Identities=18% Similarity=0.282 Sum_probs=54.5
Q ss_pred ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693 46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~ 123 (152)
+.+++++..++.+| .+. +.+++|++++ |.++.++ +. .+++|+.|++++|.++.++ |..+++|++|+++
T Consensus 45 ~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~-n~l~~~~---~~--~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 45 TSLDCHNSSITDMT-GIEKLTGLTKLICTS-NNITTLD---LS--QNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCD 114 (457)
T ss_dssp CEEECCSSCCCCCT-TGGGCTTCSEEECCS-SCCSCCC---CT--TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECC
T ss_pred CEEEccCCCcccCh-hhcccCCCCEEEccC-CcCCeEc---cc--cCCCCCEEECcCCCCceee---cCCCCcCCEEECC
Confidence 46677777776666 332 5666777777 6666653 44 4566666666666666552 5556666666666
Q ss_pred CCCCCccCcchhccCccCcEEEeec
Q psy17693 124 KNRIHTLHPDACGLCRSMLFFYFRE 148 (152)
Q Consensus 124 ~N~l~~l~~~~~~~l~~L~~L~L~~ 148 (152)
+|+++.++ +..+++|++|++++
T Consensus 115 ~N~l~~l~---~~~l~~L~~L~l~~ 136 (457)
T 3bz5_A 115 TNKLTKLD---VSQNPLLTYLNCAR 136 (457)
T ss_dssp SSCCSCCC---CTTCTTCCEEECTT
T ss_pred CCcCCeec---CCCCCcCCEEECCC
Confidence 66666553 45555566655554
No 117
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=4.9e-09 Score=86.42 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=50.2
Q ss_pred eEEecCCCCCCCCCCCC---CCcEEEEecCCCcccccCCCcccccCCC-------cccEEEccCCcCeecCcccc-cCCC
Q psy17693 47 GAACNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLV-------NLHNLLLKDCNITDIDPDAF-SGLG 115 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~~---~~l~~L~l~~~n~i~~i~~~~f~~~~l~-------~L~~L~l~~n~l~~i~~~~f-~~l~ 115 (152)
.++.+++.++.+|..+. +.++.|++++ |.+..++...|. ... +|+.|++++|.++.++...+ ..++
T Consensus 677 ~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~-N~L~~ip~~~~~--~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~ 753 (876)
T 4ecn_A 677 TVTLSYNEIQKFPTELFATGSPISTIILSN-NLMTSIPENSLK--PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753 (876)
T ss_dssp EEECCSSCCCSCCHHHHHTTCCCSEEECCS-CCCSCCCTTSSS--CTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCT
T ss_pred EEEccCCcCCccCHHHHccCCCCCEEECCC-CcCCccChHHhc--cccccccccCCccEEECCCCCCccchHHhhhccCC
Confidence 45555555555554321 4555556665 555555555444 221 55555555555555543322 2555
Q ss_pred cCcEEeCCCCCCCccCcchhccCccCcEEEeec
Q psy17693 116 ILIELDLTKNRIHTLHPDACGLCRSMLFFYFRE 148 (152)
Q Consensus 116 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 148 (152)
+|+.|+|++|+++.++.. +.++++|+.|+|++
T Consensus 754 ~L~~L~Ls~N~L~~lp~~-l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 754 YLSNMDVSYNCFSSFPTQ-PLNSSQLKAFGIRH 785 (876)
T ss_dssp TCCEEECCSSCCSSCCCG-GGGCTTCCEEECCC
T ss_pred CcCEEEeCCCCCCccchh-hhcCCCCCEEECCC
Confidence 555555555555554332 34555555555543
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.93 E-value=8.5e-10 Score=89.34 Aligned_cols=80 Identities=30% Similarity=0.484 Sum_probs=71.4
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF 143 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 143 (152)
..++.|++++ |.+..++...|. +++|+.|++++|.++.++ ..|..+++|+.|+|++|+|+.+|. .|.++++|++
T Consensus 224 ~~L~~L~Ls~-n~l~~l~~~~~~---l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~ 297 (727)
T 4b8c_D 224 QLWHALDLSN-LQIFNISANIFK---YDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSLPA-ELGSCFQLKY 297 (727)
T ss_dssp CCCCEEECTT-SCCSCCCGGGGG---CCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSCCS-SGGGGTTCSE
T ss_pred CCCcEEECCC-CCCCCCChhhcC---CCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCccCh-hhcCCCCCCE
Confidence 6788999999 999999888775 899999999999999775 568999999999999999998854 5889999999
Q ss_pred EEeecC
Q psy17693 144 FYFRES 149 (152)
Q Consensus 144 L~L~~~ 149 (152)
|+|+++
T Consensus 298 L~L~~N 303 (727)
T 4b8c_D 298 FYFFDN 303 (727)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 999876
No 119
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.92 E-value=7.8e-09 Score=82.42 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=65.9
Q ss_pred EEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCC
Q psy17693 48 AACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127 (152)
Q Consensus 48 ~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l 127 (152)
++.+++.++.+|. .+.+++.|++++ |.++.++ . .+++|+.|++++|.++.++. .+++|+.|++++|+|
T Consensus 206 L~L~~N~l~~l~~-~~~~L~~L~Ls~-N~L~~lp----~--~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L 273 (622)
T 3g06_A 206 LWAYNNRLTSLPA-LPSGLKELIVSG-NRLTSLP----V--LPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQL 273 (622)
T ss_dssp EECCSSCCSSCCC-CCTTCCEEECCS-SCCSCCC----C--CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCC
T ss_pred EECcCCcccccCC-CCCCCCEEEccC-CccCcCC----C--CCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCC
Confidence 4444444444443 235677777777 7777766 2 35678888888888888766 467899999999999
Q ss_pred CccCcchhccCccCcEEEeecCC
Q psy17693 128 HTLHPDACGLCRSMLFFYFREST 150 (152)
Q Consensus 128 ~~l~~~~~~~l~~L~~L~L~~~~ 150 (152)
+.+|. .|.++++|+.|+|+++.
T Consensus 274 ~~lp~-~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 274 TRLPE-SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CSCCG-GGGGSCTTCEEECCSCC
T ss_pred CcCCH-HHhhccccCEEEecCCC
Confidence 98865 48899999999998763
No 120
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.90 E-value=9.8e-10 Score=85.13 Aligned_cols=97 Identities=14% Similarity=0.084 Sum_probs=56.7
Q ss_pred EEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCccccc-CCCcCcEEeCCCCC
Q psy17693 48 AACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS-GLGILIELDLTKNR 126 (152)
Q Consensus 48 ~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~-~l~~L~~L~L~~N~ 126 (152)
++.+++.++.+|....+.++.|++++ |.+..+++..|. ++++|+.|++++|.++.+.+..|. .+++|+.|+|++|.
T Consensus 104 L~L~~N~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCSRGQGKKNIYLAN-NKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEECCCSSCEEEECCS-SCCCSGGGBCGG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCccccCCCCEEECCC-CCCCCCCchhhc--CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 33444444444433334566666666 666666555555 566666666666666665555554 56666666666666
Q ss_pred CCccCcchhccCccCcEEEeecC
Q psy17693 127 IHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 127 l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
++.+++. ..+++|+.|+|+++
T Consensus 181 l~~~~~~--~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 181 IYDVKGQ--VVFAKLKTLDLSSN 201 (487)
T ss_dssp CCEEECC--CCCTTCCEEECCSS
T ss_pred ccccccc--ccCCCCCEEECCCC
Confidence 6666432 23666777766654
No 121
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.90 E-value=7.1e-09 Score=82.40 Aligned_cols=76 Identities=29% Similarity=0.339 Sum_probs=35.2
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF 143 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 143 (152)
..++.|++++ |.+..++ .+. .+++|+.|++++|.++.+ ..|..+++|+.|+|++|+|+.+++ +..+++|+.
T Consensus 109 ~~L~~L~Ls~-N~l~~l~--~l~--~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 179 (605)
T 1m9s_A 109 KKLKSLSLEH-NGISDIN--GLV--HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 179 (605)
T ss_dssp TTCCEEECTT-SCCCCCG--GGG--GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CCCCEEEecC-CCCCCCc--ccc--CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence 3444455555 4444432 133 344455555555544444 234444555555555555544433 444444555
Q ss_pred EEeec
Q psy17693 144 FYFRE 148 (152)
Q Consensus 144 L~L~~ 148 (152)
|+|++
T Consensus 180 L~Ls~ 184 (605)
T 1m9s_A 180 LYLSK 184 (605)
T ss_dssp EECCS
T ss_pred EECcC
Confidence 44443
No 122
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=6.3e-09 Score=85.77 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=53.7
Q ss_pred CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCC-------cCcEEeCCCCCCCccCcchh-c
Q psy17693 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG-------ILIELDLTKNRIHTLHPDAC-G 136 (152)
Q Consensus 65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~-------~L~~L~L~~N~l~~l~~~~~-~ 136 (152)
+++.|++++ |.+..++...|. .+++|+.|++++|.++.++...|.... +|+.|+|++|+++.++...+ .
T Consensus 674 ~L~~L~Ls~-N~L~~lp~~~~~--~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~ 750 (876)
T 4ecn_A 674 NASTVTLSY-NEIQKFPTELFA--TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT 750 (876)
T ss_dssp CEEEEECCS-SCCCSCCHHHHH--TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTT
T ss_pred CcCEEEccC-CcCCccCHHHHc--cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhc
Confidence 456666666 666666655554 466777777777777777666655432 77777777777777665543 3
Q ss_pred cCccCcEEEeecC
Q psy17693 137 LCRSMLFFYFRES 149 (152)
Q Consensus 137 ~l~~L~~L~L~~~ 149 (152)
.+++|+.|+|+++
T Consensus 751 ~l~~L~~L~Ls~N 763 (876)
T 4ecn_A 751 TLPYLSNMDVSYN 763 (876)
T ss_dssp TCTTCCEEECCSS
T ss_pred cCCCcCEEEeCCC
Confidence 6777777777654
No 123
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.86 E-value=8.3e-09 Score=82.02 Aligned_cols=93 Identities=24% Similarity=0.298 Sum_probs=56.1
Q ss_pred eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693 47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~ 124 (152)
.++.+++.+..+|. +. ..++.|++++ |.+..++ .+. .+++|+.|++++|.++.++ .|..+++|+.|+|++
T Consensus 69 ~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~-N~l~~l~--~l~--~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~ 140 (605)
T 1m9s_A 69 KLFLNGNKLTDIKP-LTNLKNLGWLFLDE-NKIKDLS--SLK--DLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGN 140 (605)
T ss_dssp EEECTTSCCCCCGG-GGGCTTCCEEECCS-SCCCCCT--TST--TCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCS
T ss_pred EEEeeCCCCCCChh-hccCCCCCEEECcC-CCCCCCh--hhc--cCCCCCEEEecCCCCCCCc--cccCCCccCEEECCC
Confidence 45555555555443 21 4566666666 6666544 344 5666666666666666652 356666777777777
Q ss_pred CCCCccCcchhccCccCcEEEeecC
Q psy17693 125 NRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 125 N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
|+++.+ ..+..+++|+.|+|+++
T Consensus 141 N~l~~l--~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 141 NKITDI--TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp SCCCCC--GGGGSCTTCSEEECCSS
T ss_pred CccCCc--hhhcccCCCCEEECcCC
Confidence 777666 34666777777777654
No 124
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.86 E-value=3e-09 Score=77.58 Aligned_cols=82 Identities=10% Similarity=-0.056 Sum_probs=57.7
Q ss_pred CcEEEEecCCCcccccCCCcc--cccCCCcccEEEccCCcCeecCc----ccccCCCcCcEEeCCCCCCCccCcchhccC
Q psy17693 65 DVQYLDLGKCNVIFCFPADAF--RSTGLVNLHNLLLKDCNITDIDP----DAFSGLGILIELDLTKNRIHTLHPDACGLC 138 (152)
Q Consensus 65 ~l~~L~l~~~n~i~~i~~~~f--~~~~l~~L~~L~l~~n~l~~i~~----~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l 138 (152)
.+++|++++ |.+....+..+ . .+++|+.|++++|.++...+ ..+..+++|+.|++++|+++.++++.|.++
T Consensus 92 ~L~~L~l~~-n~l~~~~~~~~~~~--~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 92 RLKELTLED-LKITGTMPPLPLEA--TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp CCCEEEEES-CCCBSCCCCCSSSC--CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ceeEEEeeC-CEeccchhhhhhhc--cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 377788888 88776666655 5 56777777777777765322 334467777777777777777777777777
Q ss_pred ccCcEEEeecC
Q psy17693 139 RSMLFFYFRES 149 (152)
Q Consensus 139 ~~L~~L~L~~~ 149 (152)
++|++|+++++
T Consensus 169 ~~L~~L~Ls~N 179 (310)
T 4glp_A 169 PALTSLDLSDN 179 (310)
T ss_dssp TTCCEEECCSC
T ss_pred CCCCEEECCCC
Confidence 77777777765
No 125
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.86 E-value=1.6e-08 Score=77.76 Aligned_cols=75 Identities=12% Similarity=0.113 Sum_probs=44.1
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF 143 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 143 (152)
..+++|++++ |.++.++ .|. ++++|+.|++++|.++.++.. ..+|++|++++|+++.++ .|.++++|++
T Consensus 131 ~~L~~L~L~~-n~l~~lp--~~~--~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~--~~~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSN-NQLEKLP--ELQ--NSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTA 199 (454)
T ss_dssp TTCCEEECCS-SCCSSCC--CCT--TCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCE
T ss_pred CCCCEEECcC-CCCCCCc--ccC--CCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc--cccCCCCCCE
Confidence 4555566666 6665554 255 566666666666666654332 235666666666666654 2666777777
Q ss_pred EEeecC
Q psy17693 144 FYFRES 149 (152)
Q Consensus 144 L~L~~~ 149 (152)
|+++++
T Consensus 200 L~l~~N 205 (454)
T 1jl5_A 200 IYADNN 205 (454)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 776653
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.85 E-value=3.4e-11 Score=82.62 Aligned_cols=97 Identities=20% Similarity=0.207 Sum_probs=71.8
Q ss_pred ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693 46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~ 123 (152)
+.++.+++.++.+| .+. ..++.|++++ |.++.++. .+. .+++|+.|++++|.++.++ .|..+++|+.|+++
T Consensus 51 ~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~-n~l~~l~~-~~~--~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 51 KHLALSTNNIEKIS-SLSGMENLRILSLGR-NLIKKIEN-LDA--VADTLEELWISYNQIASLS--GIEKLVNLRVLYMS 123 (198)
T ss_dssp SEEECSEEEESCCC-CHHHHTTCCEEEEEE-EEECSCSS-HHH--HHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEES
T ss_pred CEEECCCCCCcccc-ccccCCCCCEEECCC-CCcccccc-hhh--cCCcCCEEECcCCcCCcCC--ccccCCCCCEEECC
Confidence 45666666777776 443 6788888888 88887764 333 3577888888888888774 47778888888888
Q ss_pred CCCCCccCc-chhccCccCcEEEeecC
Q psy17693 124 KNRIHTLHP-DACGLCRSMLFFYFRES 149 (152)
Q Consensus 124 ~N~l~~l~~-~~~~~l~~L~~L~L~~~ 149 (152)
+|+++.++. ..+.++++|++|+++++
T Consensus 124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 124 NNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 888887765 56778888888888764
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.83 E-value=1.9e-08 Score=77.25 Aligned_cols=94 Identities=20% Similarity=0.192 Sum_probs=49.9
Q ss_pred ceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCccccc---------------CCCcccEEEccCCcCeecCccc
Q psy17693 46 KGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRST---------------GLVNLHNLLLKDCNITDIDPDA 110 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~---------------~l~~L~~L~l~~n~l~~i~~~~ 110 (152)
+.+++++.+++.+|. +++.++.|++++ |.++.++.. +..+ ..++|+.|++++|.++.++ .
T Consensus 74 ~~L~l~~~~l~~lp~-~~~~L~~L~l~~-n~l~~lp~~-~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp--~ 148 (454)
T 1jl5_A 74 HELELNNLGLSSLPE-LPPHLESLVASC-NSLTELPEL-PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP--E 148 (454)
T ss_dssp SEEECTTSCCSCCCS-CCTTCSEEECCS-SCCSSCCCC-CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC--C
T ss_pred CEEEecCCccccCCC-CcCCCCEEEccC-CcCCccccc-cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc--c
Confidence 467777777777774 567777777777 777765531 1100 0124445555555554443 2
Q ss_pred ccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeec
Q psy17693 111 FSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRE 148 (152)
Q Consensus 111 f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 148 (152)
|..+++|++|++++|+++.++.. ..+|++|++++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~ 182 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGN 182 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCS
T ss_pred cCCCCCCCEEECCCCcCcccCCC----cccccEEECcC
Confidence 45555555555555555544322 12455555543
No 128
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.82 E-value=2.5e-08 Score=76.66 Aligned_cols=92 Identities=14% Similarity=0.213 Sum_probs=74.2
Q ss_pred ceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCC
Q psy17693 46 KGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N 125 (152)
+.++.+++.++.+|-.-...+++|++++ |.++.++ +. .+++|+.|++++|.++.++ |..+++|+.|++++|
T Consensus 67 ~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~-N~l~~~~---~~--~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 67 TKLICTSNNITTLDLSQNTNLTYLACDS-NKLTNLD---VT--PLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARN 137 (457)
T ss_dssp SEEECCSSCCSCCCCTTCTTCSEEECCS-SCCSCCC---CT--TCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTS
T ss_pred CEEEccCCcCCeEccccCCCCCEEECcC-CCCceee---cC--CCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCC
Confidence 5788888888888733337899999999 9998874 66 6889999999999998873 788899999999999
Q ss_pred CCCccCcchhccCccCcEEEeecC
Q psy17693 126 RIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 126 ~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+++.++ +.++++|++|+++++
T Consensus 138 ~l~~l~---l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 138 TLTEID---VSHNTQLTELDCHLN 158 (457)
T ss_dssp CCSCCC---CTTCTTCCEEECTTC
T ss_pred ccceec---cccCCcCCEEECCCC
Confidence 998874 566777777777654
No 129
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.79 E-value=3.9e-09 Score=77.00 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=41.4
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCee---cC-cccccCCCcCcEEeCCCCCCCccCcc---hhc
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITD---ID-PDAFSGLGILIELDLTKNRIHTLHPD---ACG 136 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~---i~-~~~f~~l~~L~~L~L~~N~l~~l~~~---~~~ 136 (152)
+++++|++++ |.+..+++..|. ++++|+.|++++|.+.. +. ...+..+++|++|++++|+++.++.. .++
T Consensus 145 ~~L~~L~Ls~-n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 145 PGLKVLSIAQ-AHSPAFSCEQVR--AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp SCCCEEEEEC-CSSCCCCTTSCC--CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred cCCCEEEeeC-CCcchhhHHHhc--cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 4566666666 666666666665 56666666666665432 11 11223444455555555554433221 233
Q ss_pred cCccCcEEEeec
Q psy17693 137 LCRSMLFFYFRE 148 (152)
Q Consensus 137 ~l~~L~~L~L~~ 148 (152)
++++|++|++++
T Consensus 222 ~l~~L~~L~Ls~ 233 (310)
T 4glp_A 222 AGVQPHSLDLSH 233 (310)
T ss_dssp HTCCCSSEECTT
T ss_pred cCCCCCEEECCC
Confidence 444444444443
No 130
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.77 E-value=2.3e-08 Score=76.74 Aligned_cols=12 Identities=0% Similarity=-0.092 Sum_probs=4.9
Q ss_pred ccCccCcEEEee
Q psy17693 136 GLCRSMLFFYFR 147 (152)
Q Consensus 136 ~~l~~L~~L~L~ 147 (152)
.++++|+.|+++
T Consensus 350 ~~l~~L~~L~l~ 361 (466)
T 1o6v_A 350 ANLTNINWLSAG 361 (466)
T ss_dssp TTCTTCCEEECC
T ss_pred ccCCCCCEEeCC
Confidence 334444444443
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.68 E-value=9.1e-11 Score=80.47 Aligned_cols=89 Identities=24% Similarity=0.234 Sum_probs=73.6
Q ss_pred CCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCcc
Q psy17693 53 TGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130 (152)
Q Consensus 53 ~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l 130 (152)
..++.+|..+. +.++.|++++ |.++.++ .+. ++++|+.|++++|.++.++. .+..+++|+.|++++|+++.+
T Consensus 35 ~~l~~l~~~~~~l~~L~~L~ls~-n~l~~l~--~~~--~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l 108 (198)
T 1ds9_A 35 PPIEKMDATLSTLKACKHLALST-NNIEKIS--SLS--GMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASL 108 (198)
T ss_dssp TTCCCCHHHHHHTTTCSEEECSE-EEESCCC--CHH--HHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCH
T ss_pred CcHhhhhHHHhcCCCCCEEECCC-CCCcccc--ccc--cCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcC
Confidence 34555554332 6899999999 9999987 677 78999999999999998754 566779999999999999998
Q ss_pred CcchhccCccCcEEEeecC
Q psy17693 131 HPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 131 ~~~~~~~l~~L~~L~L~~~ 149 (152)
+ .+.++++|++|+++++
T Consensus 109 ~--~~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 109 S--GIEKLVNLRVLYMSNN 125 (198)
T ss_dssp H--HHHHHHHSSEEEESEE
T ss_pred C--ccccCCCCCEEECCCC
Confidence 5 4888999999999864
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.67 E-value=8e-08 Score=72.81 Aligned_cols=81 Identities=16% Similarity=0.180 Sum_probs=53.1
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCe-----ecCcccccCCCcCcEEeCCCCCCCccCcchhccC
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNIT-----DIDPDAFSGLGILIELDLTKNRIHTLHPDACGLC 138 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~-----~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l 138 (152)
..++.+.+ . +.++.|+..+|. ++.+|+.+.+.+|.+. .|++.+|.++++|+.+++. +.++.++.++|.++
T Consensus 248 ~~L~~i~l-p-~~i~~I~~~aF~--~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c 322 (401)
T 4fdw_A 248 SGITTVKL-P-NGVTNIASRAFY--YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGN 322 (401)
T ss_dssp CCCSEEEE-E-TTCCEECTTTTT--TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTC
T ss_pred CCccEEEe-C-CCccEEChhHhh--CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCC
Confidence 34555555 4 456667777776 6677777777666554 5666777777777777776 34666777777777
Q ss_pred ccCcEEEeecC
Q psy17693 139 RSMLFFYFRES 149 (152)
Q Consensus 139 ~~L~~L~L~~~ 149 (152)
.+|+.+.+.++
T Consensus 323 ~~L~~l~lp~~ 333 (401)
T 4fdw_A 323 RKVTQLTIPAN 333 (401)
T ss_dssp CSCCEEEECTT
T ss_pred CCccEEEECcc
Confidence 77777766554
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.62 E-value=8.5e-09 Score=76.76 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=70.9
Q ss_pred ceEEecCCCCCCCCC--------CCCCCcEEEEecCCCcccccCCCcccccCC-----CcccEEEccCCcCeecCccc--
Q psy17693 46 KGAACNNTGLSAIPR--------GLSKDVQYLDLGKCNVIFCFPADAFRSTGL-----VNLHNLLLKDCNITDIDPDA-- 110 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~--------~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l-----~~L~~L~l~~n~l~~i~~~~-- 110 (152)
+.++.+++.++.++. ..+..+++|++++ |.+.......+. .+ ++|+.|++++|.++...+..
T Consensus 25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~--~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG-NSLGFKNSDELV--QILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCS-SCGGGSCHHHHH--HHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcC-CCCCHHHHHHHH--HHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 467777777776653 2334788888888 888776665555 33 77888888888888766653
Q ss_pred --ccCC-CcCcEEeCCCCCCCccCcchhcc-----CccCcEEEeecC
Q psy17693 111 --FSGL-GILIELDLTKNRIHTLHPDACGL-----CRSMLFFYFRES 149 (152)
Q Consensus 111 --f~~l-~~L~~L~L~~N~l~~l~~~~~~~-----l~~L~~L~L~~~ 149 (152)
|..+ ++|+.|++++|+++..+...+.. .++|++|+++++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 3344 78888888888888877655433 257888888764
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.59 E-value=1.7e-07 Score=70.96 Aligned_cols=90 Identities=10% Similarity=0.098 Sum_probs=68.0
Q ss_pred CCCCCCCCCC---CCcEEEEecCCCccc-----ccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCC
Q psy17693 54 GLSAIPRGLS---KDVQYLDLGKCNVIF-----CFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125 (152)
Q Consensus 54 ~l~~iP~~~~---~~l~~L~l~~~n~i~-----~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N 125 (152)
+++.++.... .+++.+.+.+ +.+. .|+..+|. ++.+|+.+.+. +.++.|+.++|.++.+|+.+++..|
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~-~~~~~~~~~~I~~~aF~--~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYG-STFNDDPEAMIHPYCLE--GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEES-SCCCCCTTCEECTTTTT--TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred CccEEChhHhhCCCCCCEEEeCC-ccccCCcccEECHHHhh--CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 3455554332 5788888887 7665 68888888 78888888888 4588888888888888888888554
Q ss_pred CCCccCcchhccCccCcEEEeecC
Q psy17693 126 RIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 126 ~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
++.++.++|.++ +|+.+++..+
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCS
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCC
Confidence 888888888888 8888888653
No 135
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.56 E-value=2.3e-08 Score=73.26 Aligned_cols=100 Identities=16% Similarity=0.128 Sum_probs=60.8
Q ss_pred eEEecCCCCCCCCCCCC--CCcEEEEecCCCccccc-CCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693 47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCF-PADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i-~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~ 123 (152)
.++++++.+...+..+. .+++.|++++ |.+... .+..+. .+++|+.|++++|.++...+..|..+++|+.|+++
T Consensus 74 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~-~~l~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 74 AFRCPRSFMDQPLAEHFSPFRVQHMDLSN-SVIEVSTLHGILS--QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp EEECTTCEECSCCCSCCCCBCCCEEECTT-CEECHHHHHHHHT--TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred EEEcCCccccccchhhccCCCCCEEEccC-CCcCHHHHHHHHh--hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 45555555544443332 5677777777 766542 223344 56777777777777665555566667777777777
Q ss_pred CC-CCCcc-CcchhccCccCcEEEeecC
Q psy17693 124 KN-RIHTL-HPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 124 ~N-~l~~l-~~~~~~~l~~L~~L~L~~~ 149 (152)
+| .++.. -+..+.++++|++|++++.
T Consensus 151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 151 GCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 77 56542 2334566777777777654
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.53 E-value=2.1e-07 Score=70.06 Aligned_cols=81 Identities=14% Similarity=0.214 Sum_probs=71.4
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF 143 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 143 (152)
..++.+.+.. + ++.|...+|. ++.+|+.+++.++ ++.|+..+|.++.+|+.+++..| ++.++.++|.++.+|+.
T Consensus 297 ~~L~~i~l~~-~-i~~I~~~aF~--~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 297 SSLTEVKLLD-S-VKFIGEEAFE--SCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK 370 (394)
T ss_dssp TTCCEEEECT-T-CCEECTTTTT--TCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred cccccccccc-c-cceechhhhc--CCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence 5677777755 4 8899999999 8999999999754 89999999999999999999877 99999999999999999
Q ss_pred EEeecCC
Q psy17693 144 FYFREST 150 (152)
Q Consensus 144 L~L~~~~ 150 (152)
+++.++.
T Consensus 371 i~lp~~~ 377 (394)
T 4fs7_A 371 VELPKRL 377 (394)
T ss_dssp EEEEGGG
T ss_pred EEECCCC
Confidence 9998654
No 137
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.52 E-value=2.4e-07 Score=69.19 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=63.3
Q ss_pred CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEE
Q psy17693 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFF 144 (152)
Q Consensus 65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 144 (152)
.++.+.+.. .++.++..+|. ++.+|+.+.+.++.++.|+.++|.++.+|+.+.|..+ ++.|...+|.++.+|+.+
T Consensus 264 ~l~~i~l~~--~i~~i~~~aF~--~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 264 ALKTLNFYA--KVKTVPYLLCS--GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp TCCEEEECC--CCSEECTTTTT--TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred hhccccccc--cceeccccccc--cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence 455666643 46778888888 7888888888888888888888888888888888654 888888888888888888
Q ss_pred EeecCC
Q psy17693 145 YFREST 150 (152)
Q Consensus 145 ~L~~~~ 150 (152)
.+.++.
T Consensus 339 ~ip~~v 344 (379)
T 4h09_A 339 SYPKSI 344 (379)
T ss_dssp CCCTTC
T ss_pred EECCcc
Confidence 776553
No 138
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.52 E-value=2.4e-08 Score=74.33 Aligned_cols=103 Identities=15% Similarity=0.166 Sum_probs=61.0
Q ss_pred ceEEecCCCCCCCCC--------CCCCCcEEEEecCCCcccccCCCccccc--CC-CcccEEEccCCcCeecCccccc--
Q psy17693 46 KGAACNNTGLSAIPR--------GLSKDVQYLDLGKCNVIFCFPADAFRST--GL-VNLHNLLLKDCNITDIDPDAFS-- 112 (152)
Q Consensus 46 ~~~~c~~~~l~~iP~--------~~~~~l~~L~l~~~n~i~~i~~~~f~~~--~l-~~L~~L~l~~n~l~~i~~~~f~-- 112 (152)
+.++.+++.+..... ..+..+++|++++ |.++......+... .. ++|+.|++++|.++......+.
T Consensus 54 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 132 (362)
T 3goz_A 54 TSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSG-NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS-SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred eEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcC-CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH
Confidence 356666666655421 1125677778887 77776555433200 23 5777788888777776654432
Q ss_pred --C-CCcCcEEeCCCCCCCccCcch----hccCc-cCcEEEeecC
Q psy17693 113 --G-LGILIELDLTKNRIHTLHPDA----CGLCR-SMLFFYFRES 149 (152)
Q Consensus 113 --~-l~~L~~L~L~~N~l~~l~~~~----~~~l~-~L~~L~L~~~ 149 (152)
. ..+|+.|++++|+++...... +...+ +|++|+++++
T Consensus 133 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 3 247777888887777544332 33444 7777777654
No 139
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.48 E-value=6.9e-07 Score=67.17 Aligned_cols=80 Identities=21% Similarity=0.371 Sum_probs=65.2
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF 143 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 143 (152)
..++.+.+ . +.++.|+..+|. ++.+|+.+.+..+ ++.|+..+|.++.+|+.+.+..+ ++.+..++|.++.+|+.
T Consensus 288 ~~L~~i~l-~-~~i~~I~~~aF~--~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 288 PALQDIEF-S-SRITELPESVFA--GCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNN 361 (394)
T ss_dssp TTCCEEEC-C-TTCCEECTTTTT--TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCE
T ss_pred cccccccC-C-CcccccCceeec--CCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCE
Confidence 34566666 3 457888888998 8888999998764 88888999999999999998654 88899999999999999
Q ss_pred EEeecC
Q psy17693 144 FYFRES 149 (152)
Q Consensus 144 L~L~~~ 149 (152)
+++.++
T Consensus 362 i~~~~~ 367 (394)
T 4gt6_A 362 IEYSGS 367 (394)
T ss_dssp EEESSC
T ss_pred EEECCc
Confidence 988764
No 140
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.41 E-value=1.3e-07 Score=69.25 Aligned_cols=97 Identities=14% Similarity=0.084 Sum_probs=77.3
Q ss_pred eEEecCCCCCCCCCC----CCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeec-CcccccCCCcCcEEe
Q psy17693 47 GAACNNTGLSAIPRG----LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI-DPDAFSGLGILIELD 121 (152)
Q Consensus 47 ~~~c~~~~l~~iP~~----~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i-~~~~f~~l~~L~~L~ 121 (152)
.++.++..+. |.. ....++.+++++ |.+....+..+. +++|+.|++++|.++.. .+..+..+++|+.|+
T Consensus 51 ~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~-n~l~~~~~~~~~---~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 51 TLDLTGKNLH--PDVTGRLLSQGVIAFRCPR-SFMDQPLAEHFS---PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp EEECTTCBCC--HHHHHHHHHTTCSEEECTT-CEECSCCCSCCC---CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred eeccccccCC--HHHHHhhhhccceEEEcCC-ccccccchhhcc---CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 5666655443 211 126789999999 999988777554 89999999999988753 455688899999999
Q ss_pred CCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 122 LTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 122 L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
+++|+++...+..+..+++|++|++++.
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 9999998777778889999999999876
No 141
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.35 E-value=7.3e-08 Score=72.13 Aligned_cols=82 Identities=27% Similarity=0.319 Sum_probs=46.2
Q ss_pred CCcEEEEecCCCccc-----ccCCCcccccCCCcccEEEccCCcCeecC----cccc--cCCCcCcEEeCCCCCCCc---
Q psy17693 64 KDVQYLDLGKCNVIF-----CFPADAFRSTGLVNLHNLLLKDCNITDID----PDAF--SGLGILIELDLTKNRIHT--- 129 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~-----~i~~~~f~~~~l~~L~~L~l~~n~l~~i~----~~~f--~~l~~L~~L~L~~N~l~~--- 129 (152)
+.++.|++++ |.+. .++. .+. .+++|+.|++++|.++... +.++ ..+++|+.|+|++|+++.
T Consensus 216 ~~L~~L~Ls~-n~l~~~g~~~l~~-~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~ 291 (386)
T 2ca6_A 216 QELKVLDLQD-NTFTHLGSSALAI-ALK--SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291 (386)
T ss_dssp TTCCEEECCS-SCCHHHHHHHHHH-HGG--GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred CCccEEECcC-CCCCcHHHHHHHH-HHc--cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH
Confidence 4566666666 6663 2322 344 4566666666666665442 1223 226667777777776666
Q ss_pred --cCcchhccCccCcEEEeecC
Q psy17693 130 --LHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 130 --l~~~~~~~l~~L~~L~L~~~ 149 (152)
++...+.++++|+.|+++++
T Consensus 292 ~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 292 RTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHHHHhcCCCceEEEccCC
Confidence 44444455666777766543
No 142
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=2.1e-07 Score=66.86 Aligned_cols=79 Identities=20% Similarity=0.194 Sum_probs=56.2
Q ss_pred CCcEEEEecCCCcccccCC--CcccccCCCcccEEEccCCcCeecCc-ccccCCCcCcEEeCCCCCCCc-cC------cc
Q psy17693 64 KDVQYLDLGKCNVIFCFPA--DAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHT-LH------PD 133 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~--~~f~~~~l~~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~L~~N~l~~-l~------~~ 133 (152)
+.++.|++++ |.|..++. ..+. .+++|+.|++++|.++.+.. ..+..+ +|+.|+|++|.+.. ++ ..
T Consensus 170 ~~L~~L~Ls~-N~l~~l~~l~~~~~--~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 170 PELLSLNLSN-NRLYRLDDMSSIVQ--KAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp TTCCEEECTT-SCCCCCGGGTTHHH--HSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred CCCCEEECCC-CCCCCCccchhHHh--hCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 4688899999 88887664 3344 57889999999998887732 233334 88899999998875 22 23
Q ss_pred hhccCccCcEEEe
Q psy17693 134 ACGLCRSMLFFYF 146 (152)
Q Consensus 134 ~~~~l~~L~~L~L 146 (152)
.+..+++|+.||=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4667788887763
No 143
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.32 E-value=2.6e-06 Score=63.50 Aligned_cols=83 Identities=17% Similarity=0.190 Sum_probs=72.3
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF 143 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 143 (152)
..++.+.+.. + ++.|...+|. +..+++.+.+.. .+..++..+|.++.+|+.+.+.++.++.++.++|.++.+|+.
T Consensus 240 ~~L~~i~lp~-~-v~~I~~~aF~--~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 240 KALDEIAIPK-N-VTSIGSFLLQ--NCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp SSCCEEEECT-T-CCEECTTTTT--TCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred ccceEEEcCC-C-ccEeCccccc--eeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 4577777766 5 7889999998 888999999865 488899999999999999999999999999999999999999
Q ss_pred EEeecCCC
Q psy17693 144 FYFRESTK 151 (152)
Q Consensus 144 L~L~~~~~ 151 (152)
+.|.++.+
T Consensus 315 i~lp~~l~ 322 (379)
T 4h09_A 315 VTLPTALK 322 (379)
T ss_dssp EECCTTCC
T ss_pred EEcCcccc
Confidence 99987654
No 144
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.16 E-value=4.3e-06 Score=53.59 Aligned_cols=55 Identities=24% Similarity=0.340 Sum_probs=48.3
Q ss_pred EEEecCCCccc--ccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCC
Q psy17693 68 YLDLGKCNVIF--CFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 128 (152)
Q Consensus 68 ~L~l~~~n~i~--~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~ 128 (152)
.++-++ +.++ .+|.+.. .+++.|+|++|.|+.+++++|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~-~~L~~~~vP~~lp-----~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAFP-----VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCS-SCCCTTTSCSCCC-----TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCC-CCCccccCCCCCC-----cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 678889 9988 8886522 46999999999999999999999999999999999875
No 145
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.09 E-value=3e-06 Score=60.84 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=49.4
Q ss_pred CCCcccEEEccCCcCeecCc--ccccCCCcCcEEeCCCCCCCccC-cchhccCccCcEEEeecCC
Q psy17693 89 GLVNLHNLLLKDCNITDIDP--DAFSGLGILIELDLTKNRIHTLH-PDACGLCRSMLFFYFREST 150 (152)
Q Consensus 89 ~l~~L~~L~l~~n~l~~i~~--~~f~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~~~ 150 (152)
.+++|+.|++++|.++.+.+ ..+..+++|+.|+|++|+|+.+. -+.+.++ +|++|+|+++.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCc
Confidence 47899999999999998764 55678999999999999999883 2334444 89999998753
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.05 E-value=1.9e-05 Score=59.33 Aligned_cols=82 Identities=17% Similarity=0.279 Sum_probs=68.2
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF 143 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 143 (152)
..++.+.+.. + +..|...+|. +..+|+.+.+. +.+..|+..+|.++.+|+.+++..+ ++.|..++|.++.+|+.
T Consensus 265 ~~L~~i~lp~-~-~~~I~~~aF~--~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 265 AYLASVKMPD-S-VVSIGTGAFM--NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp SSCCEEECCT-T-CCEECTTTTT--TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred ccccEEeccc-c-cceecCcccc--cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 4466677654 3 5678888888 88899999886 5688999999999999999999765 89999999999999999
Q ss_pred EEeecCCC
Q psy17693 144 FYFRESTK 151 (152)
Q Consensus 144 L~L~~~~~ 151 (152)
+.+.++.+
T Consensus 339 i~ip~sv~ 346 (394)
T 4gt6_A 339 IAIPSSVT 346 (394)
T ss_dssp EEECTTCC
T ss_pred EEECcccC
Confidence 99977643
No 147
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.01 E-value=2.1e-06 Score=65.29 Aligned_cols=82 Identities=16% Similarity=0.110 Sum_probs=50.2
Q ss_pred CcEEEEecCCCcccccC----CCcccccCCCcccEEEccCCcCeecCccc-----ccCCCcCcEEeCCCCCCCccC----
Q psy17693 65 DVQYLDLGKCNVIFCFP----ADAFRSTGLVNLHNLLLKDCNITDIDPDA-----FSGLGILIELDLTKNRIHTLH---- 131 (152)
Q Consensus 65 ~l~~L~l~~~n~i~~i~----~~~f~~~~l~~L~~L~l~~n~l~~i~~~~-----f~~l~~L~~L~L~~N~l~~l~---- 131 (152)
.+++|++++ |.+.... +..+. .+++|+.|++++|.++...... +...++|+.|++++|+++...
T Consensus 86 ~L~~L~L~~-n~i~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 86 KIQKLSLQN-CCLTGAGCGVLSSTLR--TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp CCCEEECTT-SCCBGGGHHHHHHHTT--SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred ceeEEEccC-CCCCHHHHHHHHHHHc--cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 577777777 7766322 34455 5677777777777766433322 223456777777777766543
Q ss_pred cchhccCccCcEEEeecC
Q psy17693 132 PDACGLCRSMLFFYFRES 149 (152)
Q Consensus 132 ~~~~~~l~~L~~L~L~~~ 149 (152)
+..+..+++|++|+++++
T Consensus 163 ~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp HHHHHHCTTCCEEECCSS
T ss_pred HHHHhhCCCCCEEECcCC
Confidence 334555677777777654
No 148
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.01 E-value=2.7e-06 Score=63.55 Aligned_cols=40 Identities=25% Similarity=0.151 Sum_probs=18.8
Q ss_pred CCcccEEEccCCcCeec----CcccccCCCcCcEEeCCCCCCCc
Q psy17693 90 LVNLHNLLLKDCNITDI----DPDAFSGLGILIELDLTKNRIHT 129 (152)
Q Consensus 90 l~~L~~L~l~~n~l~~i----~~~~f~~l~~L~~L~L~~N~l~~ 129 (152)
+++|+.|++++|.+... -+..+..+++|+.|+|++|.++.
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 136 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP 136 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH
Confidence 34555555555554431 12234444555555555555543
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.95 E-value=9e-06 Score=61.05 Aligned_cols=70 Identities=11% Similarity=0.195 Sum_probs=57.3
Q ss_pred cccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 76 VIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 76 ~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
.++.|...+|. ++.+|+.+.+.. .++.|+..+|.++.+|+.+++.++ ++.++..+|.++.+|+.+.+.++
T Consensus 58 ~VtsIg~~AF~--~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~ 127 (394)
T 4fs7_A 58 DVVSIGYAAFQ--GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM 127 (394)
T ss_dssp EEEEECTTTTT--TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred eEeEhHHHHhh--CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc
Confidence 57788888998 888899998875 488888899999999999988755 88888888888888887766544
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.93 E-value=2.5e-06 Score=63.96 Aligned_cols=17 Identities=24% Similarity=0.118 Sum_probs=7.7
Q ss_pred CCCcCcEEeCCCCCCCc
Q psy17693 113 GLGILIELDLTKNRIHT 129 (152)
Q Consensus 113 ~l~~L~~L~L~~N~l~~ 129 (152)
..++|+.|+|++|.|+.
T Consensus 209 ~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGD 225 (372)
T ss_dssp GCSCCCEEECCSSCCCH
T ss_pred cCCCcCeEECCCCCCCH
Confidence 33444444444444443
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.90 E-value=1.5e-06 Score=65.16 Aligned_cols=103 Identities=14% Similarity=0.075 Sum_probs=68.2
Q ss_pred ceEEecCCCCCCCC-CCCC---CCcEEEEecCCCcccccCCCccccc---CCCcccEEEccCCcCeecCcc----cccCC
Q psy17693 46 KGAACNNTGLSAIP-RGLS---KDVQYLDLGKCNVIFCFPADAFRST---GLVNLHNLLLKDCNITDIDPD----AFSGL 114 (152)
Q Consensus 46 ~~~~c~~~~l~~iP-~~~~---~~l~~L~l~~~n~i~~i~~~~f~~~---~l~~L~~L~l~~n~l~~i~~~----~f~~l 114 (152)
+.++.+++.+.... ..+. .+++.|++++ |.+.......+... ..++|+.|++++|.++..... ++...
T Consensus 104 ~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~-n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~ 182 (372)
T 3un9_A 104 DEVNLASCQLDPAGLRTLLPVFLRARKLGLQL-NSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN 182 (372)
T ss_dssp EEEECTTCCCCHHHHHHTHHHHHTEEEEECCS-SCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTC
T ss_pred eEEEecCCCCCHHHHHHHHHHHHhccHhhcCC-CCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcC
Confidence 35666666654211 0111 4688999999 88876544433100 246799999999988764433 33668
Q ss_pred CcCcEEeCCCCCCCccC----cchhccCccCcEEEeecC
Q psy17693 115 GILIELDLTKNRIHTLH----PDACGLCRSMLFFYFRES 149 (152)
Q Consensus 115 ~~L~~L~L~~N~l~~l~----~~~~~~l~~L~~L~L~~~ 149 (152)
++|+.|+|++|+|+... ...+...++|+.|+|+++
T Consensus 183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 88999999999988643 344667778888888765
No 152
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.88 E-value=1.7e-06 Score=65.77 Aligned_cols=60 Identities=12% Similarity=0.003 Sum_probs=36.9
Q ss_pred CCcccEEEccCCcCeecCcccccC-----CCcCcEEeCCCCCCCc----cCcchhccCccCcEEEeecC
Q psy17693 90 LVNLHNLLLKDCNITDIDPDAFSG-----LGILIELDLTKNRIHT----LHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 90 l~~L~~L~l~~n~l~~i~~~~f~~-----l~~L~~L~L~~N~l~~----l~~~~~~~l~~L~~L~L~~~ 149 (152)
+++|+.|++++|.++......+.. .++|+.|++++|+++. .-+..+..+++|++|+++++
T Consensus 340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 466777777777666544333321 5577777777777763 22344566777777777654
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.77 E-value=2.4e-05 Score=52.67 Aligned_cols=91 Identities=19% Similarity=0.316 Sum_probs=67.5
Q ss_pred CCCCCC-C-CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCC-cCeecCcccccCC----CcCcEEeCCCC-CCC
Q psy17693 57 AIPRGL-S-KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDC-NITDIDPDAFSGL----GILIELDLTKN-RIH 128 (152)
Q Consensus 57 ~iP~~~-~-~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n-~l~~i~~~~f~~l----~~L~~L~L~~N-~l~ 128 (152)
.+|... + -.++.|++++ +.|+...-..+. ++++|+.|+++++ .++.-.-..+..+ ++|+.|+|+++ +++
T Consensus 52 ~LP~~~~~~~~L~~LDLs~-~~Itd~GL~~L~--~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATD-SCIMSIGFDHME--GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp GSCCCSTTCCCEEEEEEES-CCCCGGGGGGGT--TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred cCCcccCCCceEeEEeCcC-CCccHHHHHHhc--CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 456432 2 5799999999 888765555566 7899999999998 4765433444543 47999999996 488
Q ss_pred ccCcchhccCccCcEEEeecCC
Q psy17693 129 TLHPDACGLCRSMLFFYFREST 150 (152)
Q Consensus 129 ~l~~~~~~~l~~L~~L~L~~~~ 150 (152)
.-.-..+..+++|+.|++++-.
T Consensus 129 D~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 129 DKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHHHhcCCCCCEEECCCCC
Confidence 7555567889999999998753
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.33 E-value=2.8e-05 Score=52.56 Aligned_cols=83 Identities=16% Similarity=0.056 Sum_probs=50.6
Q ss_pred CCcEEEEecCCCcccccCCCc----ccccCCCcccEEEccCCcCeecC----cccccCCCcCcEEeC--CCCCCCccC--
Q psy17693 64 KDVQYLDLGKCNVIFCFPADA----FRSTGLVNLHNLLLKDCNITDID----PDAFSGLGILIELDL--TKNRIHTLH-- 131 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~----f~~~~l~~L~~L~l~~n~l~~i~----~~~f~~l~~L~~L~L--~~N~l~~l~-- 131 (152)
..+++|++++ |.|....... +. ..++|+.|++++|.|..-. ..++...++|+.|+| ++|.|....
T Consensus 65 ~~L~~L~Ls~-n~i~~~g~~~l~~~L~--~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 65 TYVKKFSIVG-TRSNDPVAFALAEMLK--VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp CSCCEEECTT-SCCCHHHHHHHHHHHH--HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred CCcCEEECcC-CCCChHHHHHHHHHHH--hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 5677778887 7765422211 22 2356778888888776532 234555667888888 677776532
Q ss_pred --cchhccCccCcEEEeecC
Q psy17693 132 --PDACGLCRSMLFFYFRES 149 (152)
Q Consensus 132 --~~~~~~l~~L~~L~L~~~ 149 (152)
...+...++|++|+|+.+
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHhCCCcCEEeccCC
Confidence 233455567888877654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.13 E-value=4.7e-05 Score=51.42 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=59.5
Q ss_pred CCcEEEEecCCC-cccccCC----CcccccCCCcccEEEccCCcCeecCc----ccccCCCcCcEEeCCCCCCCccC---
Q psy17693 64 KDVQYLDLGKCN-VIFCFPA----DAFRSTGLVNLHNLLLKDCNITDIDP----DAFSGLGILIELDLTKNRIHTLH--- 131 (152)
Q Consensus 64 ~~l~~L~l~~~n-~i~~i~~----~~f~~~~l~~L~~L~l~~n~l~~i~~----~~f~~l~~L~~L~L~~N~l~~l~--- 131 (152)
..++.|++++ | .+..... ..+. ..++|+.|++++|.+..-.. .++...++|+.|+|++|.|....
T Consensus 36 ~~L~~L~L~~-n~~i~~~g~~~l~~~L~--~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 36 PDLEEVNLNN-IMNIPVPTLKACAEALK--TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCCEEECTT-CTTCCHHHHHHHHHHHT--TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred CCCCEEEecC-CCCCCHHHHHHHHHHHH--hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 6789999999 8 7764222 1233 45789999999999875332 33455688999999999998643
Q ss_pred -cchhccCccCcEEEee
Q psy17693 132 -PDACGLCRSMLFFYFR 147 (152)
Q Consensus 132 -~~~~~~l~~L~~L~L~ 147 (152)
...+...++|++|+|+
T Consensus 113 l~~~L~~n~~L~~L~L~ 129 (185)
T 1io0_A 113 LVEALQSNTSLIELRID 129 (185)
T ss_dssp HHHGGGGCSSCCEEECC
T ss_pred HHHHHHhCCCceEEEec
Confidence 3456677889999994
No 156
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.11 E-value=6.6e-05 Score=58.77 Aligned_cols=34 Identities=12% Similarity=0.003 Sum_probs=16.5
Q ss_pred CCCcCcEEeCCCCCCCccCcchhccCccCcEEEee
Q psy17693 113 GLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFR 147 (152)
Q Consensus 113 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 147 (152)
.+++|+.|++++|.+..++ ..+.++++|++|+++
T Consensus 218 ~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGG 251 (592)
T ss_dssp HCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEEC
T ss_pred hCCCCcEEeccCccHHHHH-HHHhhhhHHHhhccc
Confidence 3455555555555544433 334445555555543
No 157
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=97.02 E-value=0.0016 Score=39.61 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=42.9
Q ss_pred CcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCC
Q psy17693 75 NVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126 (152)
Q Consensus 75 n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~ 126 (152)
..++.|...+|. ++.+|+.+.+..+ ++.|...+|.++.+|+.+.+.+..
T Consensus 6 ~~vt~I~~~aF~--~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 6 EPVVGMDKSLFA--GNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCSSCSCTTT--TCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CccCEecHHHhc--CCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 678889999999 8999999999874 788999999999999999987754
No 158
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=96.85 E-value=0.0013 Score=39.99 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=44.3
Q ss_pred cCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693 99 KDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149 (152)
Q Consensus 99 ~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~ 149 (152)
.+..++.|+..+|.++.+|+.+.+..+ ++.|...+|.++.+|+.+.+...
T Consensus 4 ~g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 4 EGEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 345788999999999999999999875 89999999999999999998653
No 159
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.77 E-value=0.00031 Score=54.93 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=25.4
Q ss_pred CCcccEEEccCCcCeecCccccc----CCCcCcEEeCCCCCCCccCcchh----ccCccCcEEEeec
Q psy17693 90 LVNLHNLLLKDCNITDIDPDAFS----GLGILIELDLTKNRIHTLHPDAC----GLCRSMLFFYFRE 148 (152)
Q Consensus 90 l~~L~~L~l~~n~l~~i~~~~f~----~l~~L~~L~L~~N~l~~l~~~~~----~~l~~L~~L~L~~ 148 (152)
+++|+.|++++|.++......+. .+++|+.|++++|. ..+....+ .++++|+.|++++
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCC
Confidence 44455555555544433322222 33455555555554 22222222 2345566666554
No 160
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.71 E-value=0.00089 Score=52.32 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=55.6
Q ss_pred CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCC-cCeecC-cccccCCCcCcEEeCCCCCCCccCcchhc----c
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDC-NITDID-PDAFSGLGILIELDLTKNRIHTLHPDACG----L 137 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n-~l~~i~-~~~f~~l~~L~~L~L~~N~l~~l~~~~~~----~ 137 (152)
+.++.|++++ +.+.......+.. .+++|+.|+++++ .++... +..+..+++|+.|++++|.++......+. .
T Consensus 105 ~~L~~L~L~~-~~~~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 105 TWLEEIRLKR-MVVTDDCLELIAK-SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TTCCEEEEES-CBCCHHHHHHHHH-HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCeEEeeC-cEEcHHHHHHHHH-hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 5788888888 8766543333310 3678888888888 554421 22234688889999988887765544443 5
Q ss_pred CccCcEEEeecC
Q psy17693 138 CRSMLFFYFRES 149 (152)
Q Consensus 138 l~~L~~L~L~~~ 149 (152)
+++|+.|+++..
T Consensus 183 ~~~L~~L~l~~~ 194 (594)
T 2p1m_B 183 YTSLVSLNISCL 194 (594)
T ss_dssp CCCCCEEECTTC
T ss_pred CCcCcEEEeccc
Confidence 568888888765
No 161
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.68 E-value=0.00032 Score=54.87 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=30.6
Q ss_pred CCcccEEEccCCcCeecC-cccccCCCcCcEEeCCCCCCCccC-cchhccCccCcEEEeecC
Q psy17693 90 LVNLHNLLLKDCNITDID-PDAFSGLGILIELDLTKNRIHTLH-PDACGLCRSMLFFYFRES 149 (152)
Q Consensus 90 l~~L~~L~l~~n~l~~i~-~~~f~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~~ 149 (152)
+++|+.|++++|.++... +..+.++++|+.|++++|+++... +.....+++|++|++++.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESC
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCC
Confidence 455666666666554322 122345566666666666654321 222345566666666543
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.74 E-value=0.0085 Score=40.17 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=46.1
Q ss_pred CcccEEEccCCcCeecCcccccCCCcCcEEeCCCCC-CCccCcchhccC----ccCcEEEeecC
Q psy17693 91 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR-IHTLHPDACGLC----RSMLFFYFRES 149 (152)
Q Consensus 91 ~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~-l~~l~~~~~~~l----~~L~~L~L~~~ 149 (152)
-.|+.|+++++.|+...-..+.++++|+.|+|+++. ++.-.-..+..+ ++|++|+|+.-
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence 369999999999887666677899999999999984 765444445554 37999999863
No 163
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.43 E-value=0.0093 Score=44.43 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=34.2
Q ss_pred CCcccEEEccCCcCeecCcccc---cCCCcCcEEeCCCCCCCccCcch----hccCccCcEEEeecC
Q psy17693 90 LVNLHNLLLKDCNITDIDPDAF---SGLGILIELDLTKNRIHTLHPDA----CGLCRSMLFFYFRES 149 (152)
Q Consensus 90 l~~L~~L~l~~n~l~~i~~~~f---~~l~~L~~L~L~~N~l~~l~~~~----~~~l~~L~~L~L~~~ 149 (152)
+++|+.|++.+|.+..-...++ ..+++|+.|+|+.|.++...... +..+++|+.|+++++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 5667777777766653211111 13567777777777776532211 234567777777643
No 164
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.18 E-value=0.0028 Score=47.26 Aligned_cols=85 Identities=12% Similarity=0.067 Sum_probs=54.5
Q ss_pred CCcEEEEecCCCcccccCCCccc-ccCCCcccEEEccCCcCeecCcccc----cCCCcCcEEeCCCCCCCccCcchhccC
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFR-STGLVNLHNLLLKDCNITDIDPDAF----SGLGILIELDLTKNRIHTLHPDACGLC 138 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~-~~~l~~L~~L~l~~n~l~~i~~~~f----~~l~~L~~L~L~~N~l~~l~~~~~~~l 138 (152)
+.++.|++.+ |.+.......+. .-.+++|+.|+++.|.+......++ ..+++|+.|++++|.|+...-..+...
T Consensus 252 p~Lr~L~L~~-~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 252 PNLKWLGIVD-AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp TTCCEEEEES-CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCcCEEeCCC-CCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 6888999988 877531111111 0036789999999999887543332 346899999999998876433444431
Q ss_pred ccCcEEEeecCC
Q psy17693 139 RSMLFFYFREST 150 (152)
Q Consensus 139 ~~L~~L~L~~~~ 150 (152)
- ...+++++..
T Consensus 331 l-g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L-PMKIDVSDSQ 341 (362)
T ss_dssp C-CSEEECCSBC
T ss_pred c-CCEEEecCCc
Confidence 1 3557777643
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.17 E-value=0.0075 Score=41.18 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=16.6
Q ss_pred cccEEEccCCcCeecCcccc----cCCCcCcEEeCCCCCCC
Q psy17693 92 NLHNLLLKDCNITDIDPDAF----SGLGILIELDLTKNRIH 128 (152)
Q Consensus 92 ~L~~L~l~~n~l~~i~~~~f----~~l~~L~~L~L~~N~l~ 128 (152)
.|+.|++++|.|..-.-.++ ..-..|+.|+|++|.|.
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 45555555555543222222 23344555555555554
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.26 E-value=0.033 Score=38.00 Aligned_cols=85 Identities=15% Similarity=0.008 Sum_probs=58.6
Q ss_pred CCcEEEEecCCCcccccCCCccccc--CCCcccEEEccCCcCeecCc----ccccCCCcCcEEeCCCCCCCccC------
Q psy17693 64 KDVQYLDLGKCNVIFCFPADAFRST--GLVNLHNLLLKDCNITDIDP----DAFSGLGILIELDLTKNRIHTLH------ 131 (152)
Q Consensus 64 ~~l~~L~l~~~n~i~~i~~~~f~~~--~l~~L~~L~l~~n~l~~i~~----~~f~~l~~L~~L~L~~N~l~~l~------ 131 (152)
..++.|++++ |.|......++.+. .-..|+.|++++|.|..-.- .++..-..|+.|+|++|....+.
T Consensus 70 ~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 70 KHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp SCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 6789999999 99876554444310 23579999999999986433 34555678999999876432232
Q ss_pred -cchhccCccCcEEEeecC
Q psy17693 132 -PDACGLCRSMLFFYFRES 149 (152)
Q Consensus 132 -~~~~~~l~~L~~L~L~~~ 149 (152)
..++..-+.|+.|+++.+
T Consensus 149 ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhCCCcCeEeccCC
Confidence 234666778999988643
No 167
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=33.71 E-value=14 Score=16.22 Aligned_cols=7 Identities=29% Similarity=0.857 Sum_probs=5.3
Q ss_pred CCCCCce
Q psy17693 32 DCEHLCK 38 (152)
Q Consensus 32 ~cp~~C~ 38 (152)
.||..|+
T Consensus 7 tcpsgcs 13 (31)
T 2hm3_A 7 TCPSGCS 13 (31)
T ss_dssp CCCTTCC
T ss_pred cCCCCcC
Confidence 6888874
No 168
>2lur_A Kalata; beta hairpin, plant protein; NMR {Synthetic}
Probab=33.05 E-value=25 Score=15.28 Aligned_cols=11 Identities=36% Similarity=1.343 Sum_probs=7.7
Q ss_pred CCC-CCceeeec
Q psy17693 32 DCE-HLCKCKWT 42 (152)
Q Consensus 32 ~cp-~~C~C~~~ 42 (152)
.|. +.|.|+|+
T Consensus 9 ~cntpgc~cswp 20 (29)
T 2lur_A 9 TCNTPGCTCSWP 20 (29)
T ss_dssp CCCBTTBEEETT
T ss_pred ccCCCCcEecCc
Confidence 454 46999976
No 169
>1eyo_A Conotoxin TVIIA; cystine knot motif; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1
Probab=24.51 E-value=41 Score=14.77 Aligned_cols=6 Identities=33% Similarity=1.270 Sum_probs=5.1
Q ss_pred CCCCCc
Q psy17693 32 DCEHLC 37 (152)
Q Consensus 32 ~cp~~C 37 (152)
.||+.|
T Consensus 8 rcpp~c 13 (30)
T 1eyo_A 8 RCPPVC 13 (30)
T ss_dssp SCSSSB
T ss_pred CCCchh
Confidence 799887
No 170
>2ljs_A Trypsin inhibitor 3; beta strand, helix, cyclic backbone, hydrolase inhibitor; HET: PCA; NMR {Momordica cochinchinensis}
Probab=22.41 E-value=26 Score=15.53 Aligned_cols=10 Identities=50% Similarity=1.052 Sum_probs=8.2
Q ss_pred CCCCCceeee
Q psy17693 32 DCEHLCKCKW 41 (152)
Q Consensus 32 ~cp~~C~C~~ 41 (152)
.||..|.|..
T Consensus 16 dcpgecic~~ 25 (30)
T 2ljs_A 16 DCPGECICKG 25 (30)
T ss_dssp GSSTTCCBCT
T ss_pred CCchhheecc
Confidence 6999999974
No 171
>1ag7_A Conotoxin GS; neurotoxin, MU-conotoxin, sodium channel blocker, cystine knot motif; HET: HYP CGU; NMR {Conus geographus} SCOP: g.3.6.1
Probab=21.33 E-value=45 Score=14.89 Aligned_cols=6 Identities=33% Similarity=1.082 Sum_probs=5.2
Q ss_pred CCCCCc
Q psy17693 32 DCEHLC 37 (152)
Q Consensus 32 ~cp~~C 37 (152)
.||+.|
T Consensus 8 rcppqc 13 (34)
T 1ag7_A 8 RCPPQC 13 (34)
T ss_dssp CSSSCB
T ss_pred CCChhh
Confidence 799888
Done!