RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17693
(152 letters)
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 49.1 bits (118), Expect = 7e-09
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFR 147
NL +L L + +T I AF GL L LDL+ N + ++ P+A S+
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLS 56
Score = 39.8 bits (94), Expect = 2e-05
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 66 VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125
++ LDL + P AF+ GL NL L L N+T I P+AFSGL L LDL+ N
Sbjct: 2 LKSLDLSNNRLTV-IPDGAFK--GLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
Query: 126 RI 127
+
Sbjct: 59 NL 60
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 32.8 bits (76), Expect = 0.006
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
NL L L + ITD+ P S L L LDL+ N+I L P
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 32.1 bits (73), Expect = 0.11
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 66 VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125
+Q L L + P D+F S L NL L + P L L++L L++N
Sbjct: 454 LQMLSLARNKFFGGLP-DSFGSK---RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509
Query: 126 RIHTLHPDACGLCRSML 142
++ PD C+ ++
Sbjct: 510 KLSGEIPDELSSCKKLV 526
Score = 29.0 bits (65), Expect = 1.00
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 57 AIPRGLSK--DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGL 114
A+PR L ++ L L + + P + LV+L L ++ P +FS +
Sbjct: 490 AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD---LSHNQLSGQIPASFSEM 546
Query: 115 GILIELDLTKNRI 127
+L +LDL++N++
Sbjct: 547 PVLSQLDLSQNQL 559
>gnl|CDD|234080 TIGR02987, met_A_Alw26, type II restriction m6 adenine DNA
methyltransferase, Alw26I/Eco31I/Esp3I family. Members
of this family are the m6-adenine DNA methyltransferase
protein, or domain of a fusion protein that also carries
m5 cytosine methyltransferase activity, of type II
restriction systems of the Alw26I/Eco31I/Esp3I family. A
methyltransferase of this family is alway accompanied by
a type II restriction endonuclease from the
Alw26I/Eco31I/Esp3I family (TIGR02986) and by an
adenine-specific modification methyltransferase. Members
of this family are unusual in that regions of similarity
to homologs outside this family are circularly permuted
[DNA metabolism, Restriction/modification].
Length = 524
Score = 28.6 bits (64), Expect = 1.3
Identities = 14/44 (31%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPD 133
LVN K IDP G G LI L KN +
Sbjct: 20 LVNEIGKNDKSTKTKIIDP--CCGDGRLIAALLKKNEEINYFKE 61
>gnl|CDD|165857 PLN02213, PLN02213, sinapoylglucose-malate O-sinapoyltransferase/
carboxypeptidase.
Length = 319
Score = 27.8 bits (61), Expect = 2.2
Identities = 9/27 (33%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 86 RSTGLVNLHNLLLKDCNITDI-DPDAF 111
+ T +N+H++L DC++T++ PD +
Sbjct: 150 KCTAKINIHHILTPDCDVTNVTSPDCY 176
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 27.2 bits (60), Expect = 3.4
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
NL NL L +++D+ P S L L LDL+ N+I L P
Sbjct: 164 NLKNLDLSFNDLSDL-PKLLSNLSNLNNLDLSGNKISDLPP 203
Score = 27.2 bits (60), Expect = 3.9
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 88 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPD 133
L NL L L + I+ I L L ELDL+ N + P
Sbjct: 252 GNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295
>gnl|CDD|178590 PLN03016, PLN03016, sinapoylglucose-malate O-sinapoyltransferase.
Length = 433
Score = 27.3 bits (60), Expect = 3.6
Identities = 9/27 (33%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 86 RSTGLVNLHNLLLKDCNITDI-DPDAF 111
+ T +N+H++L DC++T++ PD +
Sbjct: 264 KCTAKINIHHILTPDCDVTNVTSPDCY 290
>gnl|CDD|218628 pfam05541, Spheroidin, Entomopoxvirus spheroidin protein.
Entomopoxviruses (EPVs) are large (300-400 nm)
oval-shaped viruses replicating in the cytoplasm of
their insect host cells. At the end of their replicative
cycle EPVs virions are occluded in a highly expressed
protein called spheroidin. This protein forms large
(5-20 mm long) oval-shaped occlusion bodies (OBs) called
spherules. The infectious cycle of EPVs begins with the
ingestion by the insect host of the spherules, their
dissolution by the alkaline reducing conditions of the
midgut fluid and the release of virions in the midgut
lumen. The infective particles first replicate in midgut
epithelial cells, then pass the gut barrier to colonise
the internal tissues, mainly the fat body cells. Whilst
spheroidin has been demonstrated to be non-essential for
viral replication, it plays an essential role in the
natural biological cycle of the virus in protecting
virions from adverse environmental conditions (e.g. UV
degradation) and thus improving transmission efficacy.
In this respect, spheroidins are functionally similar to
polyhedrins of baculoviruses or cypoviruses.
Length = 943
Score = 26.4 bits (58), Expect = 7.1
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCN------ITDIDPDAFSGLGIL 117
K+++ ++ K V F + V++ L N + DP+ +
Sbjct: 8 KEIRKINDSKYEVKFYLKDENTCFDRKVDMVVPLYDVDNETSGVTLESCDPNI-----EI 62
Query: 118 IELDLTKNRIHTLHPDACGLCRSMLF 143
IELD T RI T D +C F
Sbjct: 63 IELDNTHYRIKTHEDDLKEMCFVFSF 88
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 26.1 bits (58), Expect = 8.0
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 95 NLLLKDCNITDIDPDAFSGLGI 116
++L K +I D++P+ + LGI
Sbjct: 65 DILFKGESILDLEPEERAHLGI 86
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.142 0.460
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,671,474
Number of extensions: 671515
Number of successful extensions: 688
Number of sequences better than 10.0: 1
Number of HSP's gapped: 683
Number of HSP's successfully gapped: 22
Length of query: 152
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 64
Effective length of database: 7,034,450
Effective search space: 450204800
Effective search space used: 450204800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (24.6 bits)