RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17693
(152 letters)
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 89.0 bits (221), Expect = 9e-22
Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 5/130 (3%)
Query: 5 PGSVRAHVTLLLIALASLIGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSK 64
PG + LL L AE C +C C +N C L +P G+S
Sbjct: 7 PGMPALLLVSLLSVLLMGCVAETGSAQTCPSVCSC--SNQFSKVICVRKNLREVPDGIST 64
Query: 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124
+ + L+L + N I ++F+ L +L L L +I I+ AF+GL L L+L
Sbjct: 65 NTRLLNLHE-NQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121
Query: 125 NRIHTLHPDA 134
NR+ T+ A
Sbjct: 122 NRLTTIPNGA 131
Score = 62.5 bits (152), Expect = 2e-12
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 51 NNTGLSAIP--RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
L IP L K + LDL N + +F+ GL++L L + I I+
Sbjct: 193 AMCNLREIPNLTPLIK-LDELDLSG-NHLSAIRPGSFQ--GLMHLQKLWMIQSQIQVIER 248
Query: 109 DAFSGLGILIELDLTKNRIHTLHPDA 134
+AF L L+E++L N + L D
Sbjct: 249 NAFDNLQSLVEINLAHNNLTLLPHDL 274
Score = 55.1 bits (133), Expect = 7e-10
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 55 LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCN-ITDIDPD 109
L+ IP LSK ++ L L N I P+ AF + +L L L + ++ I
Sbjct: 124 LTTIPNGAFVYLSK-LKELWLRN-NPIESIPSYAFN--RIPSLRRLDLGELKRLSYISEG 179
Query: 110 AFSGLGILIELDLTKNRIHTLH 131
AF GL L L+L + +
Sbjct: 180 AFEGLSNLRYLNLAMCNLREIP 201
Score = 40.9 bits (96), Expect = 6e-05
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 55 LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
LSAI +GL +Q L + + + I +AF L +L + L N+T + D
Sbjct: 219 LSAIRPGSFQGLMH-LQKLWMIQ-SQIQVIERNAFD--NLQSLVEINLAHNNLTLLPHDL 274
Query: 111 FSGLGILIELDLTKNRIH 128
F+ L L + L N +
Sbjct: 275 FTPLHHLERIHLHHNPWN 292
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 87.9 bits (218), Expect = 2e-21
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 12 VTLLLIALASLIGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDL 71
+ I A++ A +C +C C + C GLS +P+G+ + +YL+L
Sbjct: 25 TAQVWILCAAIAAAASAGPQNCPSVCSCSNQFSK--VVCTRRGLSEVPQGIPSNTRYLNL 82
Query: 72 GKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 131
+ N I AD FR L +L L L +I I+ AF+GL L L+L N + +
Sbjct: 83 ME-NNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 132 PDA 134
A
Sbjct: 140 SGA 142
Score = 63.2 bits (154), Expect = 9e-13
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 51 NNTGLSAIP--RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
+ +P L ++ L++ N +F GL +L L + + ++ I+
Sbjct: 204 GMCNIKDMPNLTPLVG-LEELEMSG-NHFPEIRPGSFH--GLSSLKKLWVMNSQVSLIER 259
Query: 109 DAFSGLGILIELDLTKNRIHTLHPDA 134
+AF GL L+EL+L N + +L D
Sbjct: 260 NAFDGLASLVELNLAHNNLSSLPHDL 285
Score = 56.7 bits (137), Expect = 2e-10
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 55 LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCN-ITDIDPD 109
L+ IP LSK ++ L L N I P+ AF + +L L L + + I
Sbjct: 135 LTVIPSGAFEYLSK-LRELWLRN-NPIESIPSYAFN--RVPSLMRLDLGELKKLEYISEG 190
Query: 110 AFSGLGILIELDLTKNRIHTLH 131
AF GL L L+L I +
Sbjct: 191 AFEGLFNLKYLNLGMCNIKDMP 212
Score = 41.3 bits (97), Expect = 4e-05
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 55 LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
I GLS ++ L + + + +AF GL +L L L N++ + D
Sbjct: 230 FPEIRPGSFHGLSS-LKKLWVMN-SQVSLIERNAFD--GLASLVELNLAHNNLSSLPHDL 285
Query: 111 FSGLGILIELDLTKNRIH 128
F+ L L+EL L N +
Sbjct: 286 FTPLRYLVELHLHHNPWN 303
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 86.1 bits (213), Expect = 6e-21
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
C C C +C+ L +P+ L LDL N + A+ + L N
Sbjct: 12 CPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSH-NNLSRLRAEWTPT-RLTN 65
Query: 93 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
LH+LLL ++ I +AF + L LDL+ N +HTL
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL 107
Score = 49.8 bits (119), Expect = 4e-08
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 11/87 (12%)
Query: 55 LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
L + L ++ L L N I +AF + L L L I+ +
Sbjct: 100 LHTLDEFLFSDLQA-LEVLLLYN-NHIVVVDRNAFE--DMAQLQKLYLSQNQISRFPVEL 155
Query: 111 FSG---LGILIELDLTKNRIHTLHPDA 134
L L+ LDL+ N++ L
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTD 182
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 80.2 bits (197), Expect = 9e-19
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGL 90
C C ++G C G L +++ L + + R GL
Sbjct: 1 CPDACCPHGSSG---LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLR--GL 55
Query: 91 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
L NL + + + PDAF L L+L+ N + +L
Sbjct: 56 GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 80.1 bits (198), Expect = 1e-18
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
C C+C + + C+ A+P G+ + + LDLGK N I D F +
Sbjct: 3 CPPRCECSAQD--RAVLCHRKRFVAVPEGIPTETRLLDLGK-NRIKTLNQDEFA--SFPH 57
Query: 93 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
L L L + ++ ++P AF+ L L L L NR+ +
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV 99
Score = 64.4 bits (157), Expect = 4e-13
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 50 CNNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
+ L+A+P +++L+L N I L+ L + L + +
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSY-NPISTIEGSMLH--ELLRLQEIQLVGGQLAVV 287
Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDAC 135
+P AF GL L L+++ N++ TL
Sbjct: 288 EPYAFRGLNYLRVLNVSGNQLTTLEESVF 316
Score = 62.0 bits (151), Expect = 3e-12
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 51 NNTGLSAIPRGLSKD---VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
+ + + + +D ++ L++G N + AF GL +L L L+ CN+T I
Sbjct: 112 SENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFS--GLNSLEQLTLEKCNLTSIP 168
Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDA 134
+A S L LI L L I+ + +
Sbjct: 169 TEALSHLHGLIVLRLRHLNINAIRDYS 195
Score = 61.3 bits (149), Expect = 5e-12
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
+ L++ + + +NL +L + CN+T + A L L L+L+ N
Sbjct: 203 KVLEISHWPYLDTMTPNCLY---GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259
Query: 127 IHTLHPDA 134
I T+
Sbjct: 260 ISTIEGSM 267
Score = 48.6 bits (116), Expect = 1e-07
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 55 LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
L I GL+ ++ L L KCN + P +A L L L L+ NI I +
Sbjct: 140 LVYISHRAFSGLNS-LEQLTLEKCN-LTSIPTEALS--HLHGLIVLRLRHLNINAIRDYS 195
Query: 111 FSGLGILIELDLTK-NRIHTLHPDACGLCR 139
F L L L+++ + T+ P+
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225
Score = 47.0 bits (112), Expect = 5e-07
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 51 NNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
+ +S I L + +Q + L + AFR GL L L + +T +
Sbjct: 256 SYNPISTIEGSMLHELLR-LQEIQLVG-GQLAVVEPYAFR--GLNYLRVLNVSGNQLTTL 311
Query: 107 DPDAFSGLGILIELDLTKNRIH 128
+ F +G L L L N +
Sbjct: 312 EESVFHSVGNLETLILDSNPLA 333
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 75.8 bits (187), Expect = 3e-17
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
C++ GL A+P+ +S D LDL N I D F+ GL +L+ L+L + I+ I
Sbjct: 40 CSDLGLKAVPKEISPDTTLLDLQN-NDISELRKDDFK--GLQHLYALVLVNNKISKIHEK 96
Query: 110 AFSGLGILIELDLTKNRIHTLHPDA 134
AFS L L +L ++KN + + P+
Sbjct: 97 AFSPLRKLQKLYISKNHLVEIPPNL 121
Score = 56.9 bits (138), Expect = 1e-10
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 51 NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
+ L+ IP+ L + + L L N I + L+ L L I I+ +
Sbjct: 180 SEAKLTGIPKDLPETLNELHLDH-NKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGS 236
Query: 111 FSGLGILIELDLTKNRIHTL 130
S L L EL L N++ +
Sbjct: 237 LSFLPTLRELHLDNNKLSRV 256
Score = 46.5 bits (111), Expect = 5e-07
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 55 LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
+ AI SK + L LG N I + L L L L + ++ + P
Sbjct: 205 IQAIELEDLLRYSK-LYRLGLGH-NQIRMIENGSLS--FLPTLRELHLDNNKLSRV-PAG 259
Query: 111 FSGLGILIELDLTKNRIHTLHPDA 134
L +L + L N I + +
Sbjct: 260 LPDLKLLQVVYLHTNNITKVGVND 283
Score = 46.2 bits (110), Expect = 8e-07
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 51 NNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
N +S I L K +Q L + K N + P + +L L + D I +
Sbjct: 86 VNNKISKIHEKAFSPLRK-LQKLYISK-NHLVEIPPNLPS-----SLVELRIHDNRIRKV 138
Query: 107 DPDAFSGLGILIELDLTKNRIH--TLHPDA 134
FSGL + +++ N + P A
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168
Score = 44.2 bits (105), Expect = 4e-06
Identities = 23/105 (21%), Positives = 33/105 (31%), Gaps = 31/105 (29%)
Query: 55 LSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNL------HNLL----------- 97
L IP L + L + N I P F +GL N+ N L
Sbjct: 114 LVEIPPNLPSSLVELRIHD-NRIRKVPKGVF--SGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 98 --------LKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
+ + +T I D L EL L N+I + +
Sbjct: 171 GLKLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELED 212
Score = 43.1 bits (102), Expect = 9e-06
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 51 NNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTG----LVNLHNLLLKDCNIT 104
+N LS +P GL K +Q + L N I + F G + + L + +
Sbjct: 249 DNNKLSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307
Query: 105 --DIDPDAFSGLGILIELDLTKNR 126
++ P F + + + +
Sbjct: 308 YWEVQPATFRCVTDRLAIQFGNYK 331
Score = 36.9 bits (86), Expect = 0.001
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 15/91 (16%)
Query: 55 LSAIPRGLSKDV---QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111
+ I G + + L L N + PA L L + L NIT + + F
Sbjct: 229 IRMIENGSLSFLPTLRELHLDN-NKLSRVPAGLP---DLKLLQVVYLHTNNITKVGVNDF 284
Query: 112 SGLGI------LIELDLTKNRI--HTLHPDA 134
+G + L N + + P
Sbjct: 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 75.9 bits (187), Expect = 3e-17
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 16/125 (12%)
Query: 14 LLLIALASLIGAEEWMTG----DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYL 69
++ + + ++E + C+ CK ++ L++IP GL++ V+ L
Sbjct: 7 MVWVLGVIISLSKEESSNQASLSCDRNGICK---------GSSGSLNSIPSGLTEAVKSL 57
Query: 70 DLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 129
DL N I + VNL L+L I I+ D+FS LG L LDL+ N +
Sbjct: 58 DLSN-NRITYISNSDLQ--RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN 114
Query: 130 LHPDA 134
L
Sbjct: 115 LSSSW 119
Score = 49.3 bits (118), Expect = 6e-08
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
Q L +G + F GL L L + ++ +P + + + L L +
Sbjct: 152 QILRVGNMDTFTKIQRKDF--AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209
Query: 127 IHTLHPDA 134
L
Sbjct: 210 HILLLEIF 217
Score = 45.5 bits (108), Expect = 1e-06
Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 51 NNTGLSAIPRGLSKDV---QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
N + I R + + L++ + + + + + N+ +L+L +
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSL--KSIQNVSHLILHMKQHILLL 214
Query: 108 PDAFSGLGILIELDLTKNRIHTLH 131
+ L+L + T H
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFH 238
Score = 37.0 bits (86), Expect = 0.001
Identities = 10/88 (11%), Positives = 29/88 (32%), Gaps = 9/88 (10%)
Query: 55 LSAIPRGL---SKDVQYLDLG----KCNVIFCFPADAFRS-TGLVNLHNLLLKDCNITDI 106
+ + V+ L+L S N+ + D ++ +
Sbjct: 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269
Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDA 134
+ + L+EL+ ++N++ ++
Sbjct: 270 -MKLLNQISGLLELEFSRNQLKSVPDGI 296
Score = 34.7 bits (80), Expect = 0.007
Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125
+ + + +F + L L + + F L L ++ L N
Sbjct: 257 RNVKI-TDESLFQVMKLLN---QISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Score = 32.8 bits (75), Expect = 0.030
Identities = 6/79 (7%), Positives = 20/79 (25%), Gaps = 11/79 (13%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKD--------CNITDIDPDAFSGLGILI 118
+L L ++ L L+D ++ + ++
Sbjct: 201 SHLILHM-KQHILLLEIFVD--VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257
Query: 119 ELDLTKNRIHTLHPDACGL 137
+ +T + + +
Sbjct: 258 NVKITDESLFQVMKLLNQI 276
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 74.6 bits (184), Expect = 4e-17
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
C C C + +C GL A+P G+ Q + L N I PA +FR N
Sbjct: 2 CPGACVCY-NEPKVTTSCPQQGLQAVPVGIPAASQRIFLHG-NRISHVPAASFR--ACRN 57
Query: 93 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKN-RIHTLHPDA 134
L L L + ID AF+GL +L +LDL+ N ++ ++ P
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100
Score = 60.0 bits (146), Expect = 1e-11
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 51 NNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
+N L ++ GL + + L L +C + FR GL L L L+D + +
Sbjct: 89 DNAQLRSVDPATFHGLGR-LHTLHLDRCG-LQELGPGLFR--GLAALQYLYLQDNALQAL 144
Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDA 134
D F LG L L L NRI ++ A
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERA 172
Score = 56.2 bits (136), Expect = 2e-10
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 55 LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
L+ I GL+ ++ LDL + F GL LH L L C + ++ P
Sbjct: 68 LARIDAAAFTGLAL-LEQLDLSDNAQLRSVDPATFH--GLGRLHTLHLDRCGLQELGPGL 124
Query: 111 FSGLGILIELDLTKNRIHTLHPDA 134
F GL L L L N + L D
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDT 148
Score = 55.8 bits (135), Expect = 3e-10
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 51 NNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
+ L A+P R L + +L L N I P AFR GL +L LLL + +
Sbjct: 137 QDNALQALPDDTFRDLGN-LTHLFLHG-NRISSVPERAFR--GLHSLDRLLLHQNRVAHV 192
Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDA 134
P AF LG L+ L L N + L +A
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEA 220
Score = 43.8 bits (104), Expect = 5e-06
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 55 LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
+S++P RGL + L L + N + AFR L L L L N++ + +A
Sbjct: 165 ISSVPERAFRGLHS-LDRLLLHQ-NRVAHVHPHAFR--DLGRLMTLYLFANNLSALPTEA 220
Query: 111 FSGLGILIELDLTKN 125
+ L L L L N
Sbjct: 221 LAPLRALQYLRLNDN 235
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 74.7 bits (184), Expect = 6e-17
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 23 IGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPA 82
+ E M C C+C + C++ GL +P+ L D LDL N I
Sbjct: 15 VPEIEPMGPVCPFRCQC----HLRVVQCSDLGLEKVPKDLPPDTALLDLQN-NKITEIKD 69
Query: 83 DAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
F+ L NLH L+L + I+ I P AF+ L L L L+KN++ L
Sbjct: 70 GDFK--NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119
Score = 57.3 bits (139), Expect = 9e-11
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 51 NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
+T ++ IP+GL + L L N I A + + GL NL L L +I+ +D +
Sbjct: 179 ADTNITTIPQGLPPSLTELHLDG-NKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGS 235
Query: 111 FSGLGILIELDLTKNRIHTLHPDACGL 137
+ L EL L N++ +
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGGLADH 262
Score = 56.5 bits (137), Expect = 2e-10
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 55 LSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITD--IDPDAFS 112
L +P + K +Q L + + N I F GL + + L + I+ AF
Sbjct: 112 LKELPEKMPKTLQELRVHE-NEITKVRKSVF--NGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 113 GLGILIELDLTKNRIHTLHPDA 134
G+ L + + I T+
Sbjct: 169 GMKKLSYIRIADTNITTIPQGL 190
Score = 52.3 bits (126), Expect = 6e-09
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 60 RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIE 119
+G+ K + Y+ + N I P +L L L IT +D + GL L +
Sbjct: 168 QGMKK-LSYIRIADTN-ITTIPQGLPP-----SLTELHLDGNKITKVDAASLKGLNNLAK 220
Query: 120 LDLTKNRIHTLHPDA 134
L L+ N I + +
Sbjct: 221 LGLSFNSISAVDNGS 235
Score = 47.7 bits (114), Expect = 3e-07
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 55 LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
++ + +GL+ + L L N I + +L L L + + + P
Sbjct: 204 ITKVDAASLKGLNN-LAKLGLSF-NSISAVDNGSLA--NTPHLRELHLNNNKLVKV-PGG 258
Query: 111 FSGLGILIELDLTKNRIHTLHPDA 134
+ + + L N I + +
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSND 282
Score = 46.9 bits (112), Expect = 4e-07
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 51 NNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
N +S I L K ++ L L K N + P + L L + + IT +
Sbjct: 84 INNKISKISPGAFAPLVK-LERLYLSK-NQLKELPEKMPK-----TLQELRVHENEITKV 136
Query: 107 DPDAFSGLGILIELDLTKNRIHTLH 131
F+GL +I ++L N + +
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSG 161
Score = 44.2 bits (105), Expect = 4e-06
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 9/84 (10%)
Query: 51 NNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRS----TGLVNLHNLLLKDCNI- 103
NN L +P GL+ K +Q + L N I ++ F T + + L +
Sbjct: 248 NNNKLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306
Query: 104 -TDIDPDAFSGLGILIELDLTKNR 126
+I P F + + + L +
Sbjct: 307 YWEIQPSTFRCVYVRAAVQLGNYK 330
Score = 32.7 bits (75), Expect = 0.032
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 15/91 (16%)
Query: 55 LSAIPRGLSKDV---QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111
+SA+ G + + L L N + P + + L + NI+ I + F
Sbjct: 228 ISAVDNGSLANTPHLRELHLNN-NKLVKVPGGLA---DHKYIQVVYLHNNNISAIGSNDF 283
Query: 112 ------SGLGILIELDLTKNRIHT--LHPDA 134
+ + L N + + P
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 73.9 bits (182), Expect = 2e-16
Identities = 32/111 (28%), Positives = 42/111 (37%), Gaps = 5/111 (4%)
Query: 30 TGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTG 89
T + C K N K C N GL+ IP L + L+ NV+ F
Sbjct: 1 TTSSDQKCIEKEVN--KTYNCENLGLNEIPGTLPNSTECLEFS-FNVLPTIQNTTFS--R 55
Query: 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
L+NL L L C I I D F L L LT N + + A ++
Sbjct: 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106
Score = 53.1 bits (128), Expect = 4e-09
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Query: 51 NNTGLSAIPRGLSKD---VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
NT + G ++ ++ LDL + I + L +L +L L +
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSH-DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392
Query: 108 PDAFSGLGILIELDLTKNRIHTLHPD 133
+AF L LDL R+
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQ 418
Score = 51.9 bits (125), Expect = 8e-09
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 51 NNTGLSAIPRGL---SKDVQYLDLGKCN--VIFCFPADAFRSTGLVNLHNLLLKDCNITD 105
+++ L L +Q+L+L + ++ + L L L+L C+++
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ--TLGRLEILVLSFCDLSS 490
Query: 106 IDPDAFSGLGILIELDLTKNRIHTLHPDA 134
ID AF+ L ++ +DL+ NR+ + +A
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519
Score = 50.8 bits (122), Expect = 2e-08
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 66 VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125
V+ ++L K + F ++ F L L L +++++ P GL L +L L+ N
Sbjct: 256 VESINLQK-HYFFNISSNTFH--CFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSAN 311
Query: 126 RIHTLHPDACGLCRS 140
+ L + S
Sbjct: 312 KFENLCQISASNFPS 326
Score = 50.0 bits (120), Expect = 5e-08
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
+ L L C+ + AF L ++++ L +T +A S L + L+L N
Sbjct: 479 EILVLSFCD-LSSIDQHAFT--SLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNH 534
Query: 127 IHTLHPDACGLCRSMLFFYFR 147
I + P + R
Sbjct: 535 ISIILPSLLPILSQQRTINLR 555
Score = 49.6 bits (119), Expect = 5e-08
Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 51 NNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNI-TDID 107
T LS +P GL ++ L L N + +L +L +K ++
Sbjct: 286 TATHLSELPSGLVGLSTLKKLVLSA-NKFENLCQISAS--NFPSLTHLSIKGNTKRLELG 342
Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDACGL 137
L L ELDL+ + I T L
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQL 372
Score = 49.2 bits (118), Expect = 8e-08
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 2/70 (2%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
+ LDL + F+ L L L L + F GL L L+L N
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQ--NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460
Query: 127 IHTLHPDACG 136
+
Sbjct: 461 FPKGNIQKTN 470
Score = 48.5 bits (116), Expect = 2e-07
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
+ F +++ ++ L+ +I + F L ELDLT
Sbjct: 231 WLGTF-EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289
Query: 127 IHTLHPDACGL 137
+ L GL
Sbjct: 290 LSELPSGLVGL 300
Score = 48.5 bits (116), Expect = 2e-07
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 51 NNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
TG+S+I K ++ L LG N I L L ++ I +
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLG-SNHISSIKLPKGF--PTEKLKVLDFQNNAIHYLS 169
Query: 108 PDAFSGLGIL--IELDLTKNRIHTLHPDA 134
+ S L + L+L N I + P A
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGA 198
Score = 48.1 bits (115), Expect = 2e-07
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 8/84 (9%)
Query: 55 LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
L + G +++L + I L +L L +I+ I
Sbjct: 93 LIFMAETALSGPKA-LKHLFFIQTG-ISSIDFIPLH--NQKTLESLYLGSNHISSIKLPK 148
Query: 111 FSGLGILIELDLTKNRIHTLHPDA 134
L LD N IH L +
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKED 172
Score = 46.2 bits (110), Expect = 1e-06
Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 9/96 (9%)
Query: 51 NNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
+ + + +L + L NL L L +I
Sbjct: 309 SANKFENLCQISASNFPS-LTHLSIKGNTKRLELGTGCLE--NLENLRELDLSHDDIETS 365
Query: 107 D--PDAFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
D L L L+L+ N +L +A C
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401
Score = 44.2 bits (105), Expect = 4e-06
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123
+Q LDL + P+ GL L L+L ++ + S L L +
Sbjct: 278 SGLQELDLTA-THLSELPSGLV---GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333
Query: 124 KNRIHTLHPD 133
N
Sbjct: 334 GNTKRLELGT 343
Score = 38.1 bits (89), Expect = 5e-04
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 51 NNTGLSAIPRGLSKD---VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
+ LS+I + + ++DL N + +A L ++ L L +I+ I
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSH-NRLTSSSIEALS--HLKGIY-LNLASNHISIIL 539
Query: 108 PDAFSGLGILIELDLTKNRIH 128
P L ++L +N +
Sbjct: 540 PSLLPILSQQRTINLRQNPLD 560
Score = 34.6 bits (80), Expect = 0.009
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 55 LSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111
+S+I ++ ++ LD N I + S +L L +I I+P AF
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199
Query: 112 SGLGILIELDLTKNRIHTLHPDACGLC 138
L+ + +
Sbjct: 200 DSAVFQ-SLNFGGTQNLLVIFKGLKNS 225
Score = 33.5 bits (77), Expect = 0.018
Identities = 14/80 (17%), Positives = 19/80 (23%), Gaps = 7/80 (8%)
Query: 66 VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI--LIELDLT 123
L+L N I AF S +L + I L
Sbjct: 181 NLSLNLNG-NDIAGIEPGAFDSA---VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236
Query: 124 KNRIHTLHPDA-CGLCRSML 142
+ P GLC +
Sbjct: 237 DMDDEDISPAVFEGLCEMSV 256
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 72.0 bits (177), Expect = 1e-15
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 37 CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNL 96
C N C + LS +P + + +DL N + + +F L L
Sbjct: 7 CIEVVPNIT--YQCMDQKLSKVPDDIPSSTKNIDLS-FNPLKILKSYSFS--NFSELQWL 61
Query: 97 LLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
L C I I+ A+ GL L L LT N I + P +
Sbjct: 62 DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99
Score = 57.3 bits (139), Expect = 1e-10
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
L + + ++ F NL L L C + I F L L L+++ N
Sbjct: 451 NTLKMAGNSFKDNTLSNVFA--NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508
Query: 127 IHTLHPDA 134
+ L
Sbjct: 509 LLFLDSSH 516
Score = 56.2 bits (136), Expect = 3e-10
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 6/100 (6%)
Query: 51 NNTGLSAIPRGLSKD---VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
N+ + + + +LDL KC + F L L L + N+ +D
Sbjct: 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFD--TLHRLQLLNMSHNNLLFLD 513
Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFR 147
++ L L LD + NRI T +S+ FF
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553
Score = 50.4 bits (121), Expect = 4e-08
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
L L N I F +F GL +L NL+ + + ++ L L +L++ N
Sbjct: 83 SNLILT-GNPIQSFSPGSFS--GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139
Query: 127 IHTLHPDA 134
IH+ A
Sbjct: 140 IHSCKLPA 147
Score = 45.8 bits (109), Expect = 1e-06
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID-PDAFSGLGILIELDLTKN 125
+ L + + + L+ L L + I P FS L L+ +DL+ N
Sbjct: 107 ENLVAVETK-LASLESFPIG--QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Query: 126 RIHTLHPDACGLCRSMLF 143
I T+ + R
Sbjct: 164 YIQTITVNDLQFLRENPQ 181
Score = 45.4 bits (108), Expect = 1e-06
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 4/85 (4%)
Query: 51 NNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
+ G + +++Q+LD + AF L L L + N
Sbjct: 384 SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL--SLEKLLYLDISYTNTKIDFD 441
Query: 109 DAFSGLGILIELDLTKNRIHTLHPD 133
F GL L L + N
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLS 466
Score = 43.5 bits (103), Expect = 7e-06
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 51 NNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
T L+++ ++ L++ + C F L NL ++ L I I
Sbjct: 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS--NLTNLVHVDLSYNYIQTIT 169
Query: 108 PDAFSGLG----ILIELDLTKNRIHTLHPDA 134
+ L + + LD++ N I + A
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200
Score = 43.5 bits (103), Expect = 9e-06
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
Query: 51 NNTGLSAIPRGLSKD---VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
+ L I G+ +Q L++ N + + + L +L L I
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSH-NNLLFLDSSHYN--QLYSLSTLDCSFNRIETSK 537
Query: 108 PDAFSGLGILIELDLTKNRIH 128
L +LT N +
Sbjct: 538 GILQHFPKSLAFFNLTNNSVA 558
Score = 42.7 bits (101), Expect = 1e-05
Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 25/114 (21%)
Query: 51 NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI---- 106
N G + + + YLDL + N + ++ G +L +L L +
Sbjct: 337 MNKGSISFKKVALPSLSYLDLSR-NALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF 395
Query: 107 --------------------DPDAFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
+ AF L L+ LD++ S
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449
Score = 40.8 bits (96), Expect = 6e-05
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 7/89 (7%)
Query: 51 NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
L P ++ L L N + +F+ L +L L L ++ +
Sbjct: 315 IRCQLKQFPTLDLPFLKSLTL-TMNKG----SISFKKVALPSLSYLDLSRNALSFSGCCS 369
Query: 111 FSGLGI--LIELDLTKNRIHTLHPDACGL 137
+S LG L LDL+ N + + GL
Sbjct: 370 YSDLGTNSLRHLDLSFNGAIIMSANFMGL 398
Score = 39.6 bits (93), Expect = 2e-04
Identities = 14/92 (15%), Positives = 23/92 (25%), Gaps = 8/92 (8%)
Query: 51 NNTGLSAIPRGLSKDVQYL--------DLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCN 102
N S I + +++ L + + F V + L N
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272
Query: 103 ITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
D F L + + L I L
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP 304
Score = 37.3 bits (87), Expect = 0.001
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
Q L + +C + F + L L +L L + L L LDL++N
Sbjct: 310 QSLSIIRCQL------KQFPTLDLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNA 361
Query: 127 IHTLHPDA 134
+ +
Sbjct: 362 LSFSGCCS 369
Score = 36.2 bits (84), Expect = 0.002
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 8/73 (10%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLL----LKDCNITDIDPDAFSGLGILIELDL 122
++DL N I + + L + + I I AF G+ L EL L
Sbjct: 156 VHVDLSY-NYIQTITVNDLQ--FLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTL 211
Query: 123 TKNRIHTLHPDAC 135
N + C
Sbjct: 212 RGNFNSSNIMKTC 224
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 72.1 bits (177), Expect = 1e-15
Identities = 27/98 (27%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Query: 37 CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNL 96
C N C IP L + LDL N + + +F L L
Sbjct: 3 CVEVVPNIT--YQCMELNFYKIPDNLPFSTKNLDLSF-NPLRHLGSYSFF--SFPELQVL 57
Query: 97 LLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
L C I I+ A+ L L L LT N I +L A
Sbjct: 58 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95
Score = 53.6 bits (129), Expect = 3e-09
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 51 NNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
++T GLS ++ L + + F D F L NL L L C + +
Sbjct: 429 SHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFT--ELRNLTFLDLSQCQLEQL 485
Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDA 134
P AF+ L L L++ N++ ++
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKSVPDGI 513
Score = 49.7 bits (119), Expect = 5e-08
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 50 CNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
+ G+ + + +++LD N+ F L NL L + +
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAF 437
Query: 108 PDAFSGLGILIELDLTKNRI 127
F+GL L L + N
Sbjct: 438 NGIFNGLSSLEVLKMAGNSF 457
Score = 48.6 bits (116), Expect = 1e-07
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
L L N I AF GL +L L+ + N+ ++ L L EL++ N
Sbjct: 79 STLILTG-NPIQSLALGAFS--GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135
Query: 127 IHTLHPDA 134
I +
Sbjct: 136 IQSFKLPE 143
Score = 45.5 bits (108), Expect = 1e-06
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 55 LSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGL 114
L I L + +LDL +C + AF L +L L + + + F L
Sbjct: 462 LPDIFTELRN-LTFLDLSQCQ-LEQLSPTAFN--SLSSLQVLNMASNQLKSVPDGIFDRL 517
Query: 115 GILIELDLTKNRIHTLHPDACGLCRSMLFF 144
L ++ L N C C + +
Sbjct: 518 TSLQKIWLHTNPWD------CS-CPRIDYL 540
Score = 44.3 bits (105), Expect = 4e-06
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 55 LSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID-PDA 110
+ ++ G +Q L + N + L L L + I P+
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIG--HLKTLKELNVAHNLIQSFKLPEY 144
Query: 111 FSGLGILIELDLTKNRIHTLHPDA 134
FS L L LDL+ N+I +++
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTD 168
Score = 37.8 bits (88), Expect = 7e-04
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 7/90 (7%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID-- 107
N P K ++ L N ++ L +L L L ++
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTS-NKGGNAFSE----VDLPSLEFLDLSRNGLSFKGCC 365
Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDACGL 137
+ G L LDL+ N + T+ + GL
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395
Score = 35.5 bits (82), Expect = 0.004
Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 8/73 (10%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLL----LKDCNITDIDPDAFSGLGILIELDL 122
++LDL N I R L + L L + I P AF + L +L L
Sbjct: 152 EHLDLSS-NKIQSIYCTDLR--VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTL 207
Query: 123 TKNRIHTLHPDAC 135
N C
Sbjct: 208 RNNFDSLNVMKTC 220
Score = 31.6 bits (72), Expect = 0.077
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 6/89 (6%)
Query: 55 LSAIPRGLSKDV--QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLK----DCNITDIDP 108
++ I G K++ L L + + +H L+L + N+ D
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248
Query: 109 DAFSGLGILIELDLTKNRIHTLHPDACGL 137
A GL L + + D L
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDL 277
Score = 28.5 bits (64), Expect = 0.94
Identities = 17/128 (13%), Positives = 30/128 (23%), Gaps = 26/128 (20%)
Query: 29 MTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGL-----SKDVQYLDLGKCNVIFCFPAD 83
M + L + G N L + + ++ L + D
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276
Query: 84 AFRSTGLVNLHNLLLKDCNITDIDPDAF-------------------SGLGILIELDLTK 124
F L N+ + L I + ++ L L L T
Sbjct: 277 LFN--CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334
Query: 125 NRIHTLHP 132
N+
Sbjct: 335 NKGGNAFS 342
Score = 27.8 bits (62), Expect = 1.6
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 9/94 (9%)
Query: 51 NNTGLSAIPRGLSKDV---QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
NN + + + + + L + F + L L NL +++ + +D
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 108 ------PDAFSGLGILIELDLTKNRIHTLHPDAC 135
D F+ L + L I + +
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 72.0 bits (177), Expect = 1e-15
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 38 KCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLL 97
KC ++ A C++ L+ +P L ++ L+L N + PA F L +L
Sbjct: 1 KCTVSHEV--ADCSHLKLTQVPDDLPTNITVLNLT-HNQLRRLPAANFT--RYSQLTSLD 55
Query: 98 LKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
+ I+ ++P+ L +L L+L N + L C +
Sbjct: 56 VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98
Score = 54.2 bits (131), Expect = 1e-09
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
+ L+L + F NL L L +I I + F LI LDL+ N
Sbjct: 76 KVLNLQHNE-LSQLSDKTFA--FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132
Query: 127 IHTLHPDACG 136
+ +
Sbjct: 133 LSSTKLGTQV 142
Score = 53.5 bits (129), Expect = 3e-09
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI--LIELDLTK 124
L L + ++ NL L + ++ F GL L LDL+
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257
Query: 125 NRIHTLHPDACGLCRS 140
N ++ + D+
Sbjct: 258 NNLNVVGNDSFAWLPQ 273
Score = 51.2 bits (123), Expect = 2e-08
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
+ L L + F NL L L N+ + D+F+ L L L N
Sbjct: 225 RNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283
Query: 127 IHTLHPDA 134
I L +
Sbjct: 284 IQHLFSHS 291
Score = 50.0 bits (120), Expect = 4e-08
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 67 QYLDLGKCNV-IFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125
+YL L + + F S LH L L I+ I+ DAFS LG L LDL N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415
Query: 126 RIHTLHP 132
I
Sbjct: 416 EIGQELT 422
Score = 50.0 bits (120), Expect = 5e-08
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 55 LSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111
LS+ G +++Q L L N I ++ +L L L I + P F
Sbjct: 133 LSSTKLGTQVQLENLQELLLSN-NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191
Query: 112 SGLGILIELDLTKNRIHTLHPDACGLCRSML 142
+G L L L ++ + L +
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222
Score = 49.2 bits (118), Expect = 7e-08
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 55 LSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111
LS + ++ L L + I + F NL L L ++
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFV--KQKNLITLDLSHNGLSSTKLGTQ 141
Query: 112 SGLGILIELDLTKNRIHTLHPDACGLC 138
L L EL L+ N+I L + +
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIF 168
Score = 48.5 bits (116), Expect = 1e-07
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID--PDAFSGLGILIELDLTK 124
+ L + ++F + +L L+L+ + ++D P F L L LDL+
Sbjct: 433 FEIYLSYNKYLQLTR-NSF--ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489
Query: 125 NRIHTLHPDACGLCRSMLFFYFR 147
N I ++ D + +
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQ 512
Score = 48.1 bits (115), Expect = 2e-07
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
Query: 51 NNTGLSAIPRGL-----SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNIT- 104
+ T L + + L+L K I +DAF L +L L L I
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIESDAFS--WLGHLEVLDLGLNEIGQ 419
Query: 105 DIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
++ + GL + E+ L+ N+ L ++ L S
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455
Score = 48.1 bits (115), Expect = 2e-07
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
+ LDLG + +R GL N+ + L + ++F+ + L L L +
Sbjct: 408 EVLDLGLNEIGQELTGQEWR--GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465
Query: 127 IHTLH 131
+ +
Sbjct: 466 LKNVD 470
Score = 48.1 bits (115), Expect = 2e-07
Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
Q L L + + + L NL L L + NI +I+ D GL L LDL N
Sbjct: 457 QRLMLRR-VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515
Query: 127 IHTLHPDACGLCRSMLF 143
+ L A
Sbjct: 516 LARLWKHANPGGPIYFL 532
Score = 47.7 bits (114), Expect = 3e-07
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
L+L N P + F+ L L + L N+ + F+ L L+L KN
Sbjct: 539 HILNLES-NGFDEIPVEVFK--DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595
Query: 127 IHTLHPDACGLCRSML 142
I ++ G L
Sbjct: 596 ITSVEKKVFGPAFRNL 611
Score = 45.8 bits (109), Expect = 1e-06
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 12/89 (13%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN- 125
LDL N + D+F L L L+ NI + + GL + L+L ++
Sbjct: 251 TMLDLSY-NNLNVVGNDSFA--WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307
Query: 126 --------RIHTLHPDACGLCRSMLFFYF 146
+ + + + +
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNM 336
Score = 45.4 bits (108), Expect = 2e-06
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 67 QYLDLGKCNVIFCFPADAFRS------TGLVNLHNLLLKDCNITDIDPDAFSGLGILIEL 120
+ LDL N + A GL +LH L L+ +I + F L L +
Sbjct: 507 EILDLQH-NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565
Query: 121 DLTKNRIHTLHPDA 134
DL N ++TL
Sbjct: 566 DLGLNNLNTLPASV 579
Score = 44.6 bits (106), Expect = 3e-06
Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 8/86 (9%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTG-------LVNLHNLLLKDCNITDIDPDAFSGLGILIE 119
+Y L N I + + + + ++ ID +F L L
Sbjct: 275 EYFFLEY-NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333
Query: 120 LDLTKNRIHTLHPDACGLCRSMLFFY 145
L++ N I + + ++ +
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLS 359
Score = 43.1 bits (102), Expect = 1e-05
Identities = 19/82 (23%), Positives = 25/82 (30%), Gaps = 11/82 (13%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA--------FSGLGILI 118
LDL N I D GL L L L+ N+ + A GL L
Sbjct: 483 TILDLSNNN-IANINDDML--EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539
Query: 119 ELDLTKNRIHTLHPDACGLCRS 140
L+L N + +
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFE 561
Score = 41.1 bits (97), Expect = 4e-05
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 62 LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELD 121
L + + + +F+ L L +L ++D +I I + F+GL L L
Sbjct: 303 LKRSFTKQSISL-ASLPKIDDFSFQ--WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359
Query: 122 LTKNR--IHTLHPDAC-GLCRSML 142
L+ + + TL + L S L
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPL 383
Score = 38.1 bits (89), Expect = 5e-04
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 6/78 (7%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS---GLGILIELDLT 123
+ L+L N I F F + L L L + + + + L L+
Sbjct: 174 KKLELSS-NQIKEFSPGCFH--AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230
Query: 124 KNRIHTLHPDACGLCRSM 141
+++ T +
Sbjct: 231 NSQLSTTSNTTFLGLKWT 248
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 70.1 bits (172), Expect = 4e-15
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
+ ++IP GL+ ++ LDL N I R NL L+LK I I+ D
Sbjct: 12 GRSRSFTSIPSGLTAAMKSLDLSF-NKITYIGHGDLR--ACANLQVLILKSSRINTIEGD 68
Query: 110 AFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
AF LG L LDL+ N + +L G S
Sbjct: 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99
Score = 50.9 bits (122), Expect = 2e-08
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
Q L +G F GL +L+ L +K ++ + + + + L L +
Sbjct: 126 QTLRIGNVETFSEIRRIDFA--GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183
Query: 127 IHTLHPDA 134
L
Sbjct: 184 SAFLLEIF 191
Score = 50.9 bits (122), Expect = 2e-08
Identities = 12/96 (12%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
++TG+ + + + ++ LD+ N + F L L L + + +
Sbjct: 417 LSSTGIRVVKTCIPQTLEVLDVSN-NNLDSFSL------FLPRLQELYISRNKLKTLPDA 469
Query: 110 AFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFY 145
+ +L+ + +++N++ ++ S+ +
Sbjct: 470 SL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503
Score = 47.8 bits (114), Expect = 3e-07
Identities = 10/91 (10%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 51 NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
+ +S + + + ++ L + + +F + + L + + +++ + +
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQ-FYLFYDLSTVYS--LLEKVKRITVENSKVFLVPCSF 329
Query: 111 FSGLGILIELDLTKNRIHTLHPDACGLCRSM 141
L L LDL++N + + +
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360
Score = 45.1 bits (107), Expect = 2e-06
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 51 NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
+N L + L + +Q L + + N + P + L + + + +
Sbjct: 439 SNNNLDSFSLFLPR-LQELYISR-NKLKTLPDASL----FPVLLVMKISRNQLKSVPDGI 492
Query: 111 FSGLGILIELDLTKNRIH 128
F L L ++ L N
Sbjct: 493 FDRLTSLQKIWLHTNPWD 510
Score = 43.2 bits (102), Expect = 9e-06
Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 51 NNTGLSAIPRGLSKDV---QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
N+ + +P S+ + ++LDL + ++ + ++ +L L+L ++ +
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377
Query: 108 --PDAFSGLGILIELDLTKNRIHTLHPDACGL 137
+ L L LD+++N H +
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFHPMPDSCQWP 409
Score = 41.2 bits (97), Expect = 5e-05
Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 6/87 (6%)
Query: 51 NNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
N S I R + L++ + + + + +S + ++H+L L +
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKA-LSLRNYQSQSLKS--IRDIHHLTLHLSESAFLL 188
Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDA 134
L + L+L +
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSP 215
Score = 39.3 bits (92), Expect = 2e-04
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
Q L L + N + L NL +L + + PD+ + L+L+
Sbjct: 364 QTLVLSQ-NHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTG 421
Query: 127 IHTLHPDA 134
I +
Sbjct: 422 IRVVKTCI 429
Score = 35.1 bits (81), Expect = 0.006
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 5/70 (7%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI-DPDAFSGLGILIELDLT-K 124
++LDL N + + F L +L L L + F L L L +
Sbjct: 77 EHLDLSD-NHLSSLSSSWFG--PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133
Query: 125 NRIHTLHPDA 134
+
Sbjct: 134 ETFSEIRRID 143
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 68.5 bits (168), Expect = 8e-15
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
C IP L + LDL N + + +F L L L C I I+
Sbjct: 14 CMELNFYKIPDNLPFSTKNLDLSF-NPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDG 70
Query: 110 AFSGLGILIELDLTKNRIHTLHPDA 134
A+ L L L LT N I +L A
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGA 95
Score = 45.7 bits (109), Expect = 1e-06
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 51 NNTGLSAIPRGLSKDV---QYLDLGKCNVIFCFP-ADAFRSTGLVNLHNLLLKDCNITDI 106
T L+++ + + L++ N+I F + F + L NL +L L I I
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSI 164
Query: 107 DPDAFSGLGIL----IELDLTKNRIHTLHPDA 134
L + + LDL+ N ++ + P A
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Score = 37.6 bits (88), Expect = 5e-04
Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 11/78 (14%)
Query: 55 LSAIPRG-------LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
+ +I + LDL N + AF+ L L L + +
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLS-LNPMNFIQPGAFKEI---RLKELALDTNQLKSVP 216
Query: 108 PDAFSGLGILIELDLTKN 125
F L L ++ L N
Sbjct: 217 DGIFDRLTSLQKIWLHTN 234
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 67.0 bits (164), Expect = 2e-14
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
C C+C+ T C+N L+ IP + + L L N A L
Sbjct: 5 CPEKCRCEGTT----VDCSNQKLNKIPEHIPQYTAELRLNN-NEFTVLEATGIFK-KLPQ 58
Query: 93 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
L + + ITDI+ AF G + E+ LT NR+ +
Sbjct: 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKM 100
Score = 49.7 bits (119), Expect = 3e-08
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 51 NNTGLSAIPRG----LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
+N ++ I G S V + L N + F+ GL +L L+L+ IT +
Sbjct: 65 SNNKITDIEEGAFEGASG-VNEILLTS-NRLENVQHKMFK--GLESLKTLMLRSNRITCV 120
Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDA 134
D+F GL + L L N+I T+ P A
Sbjct: 121 GNDSFIGLSSVRLLSLYDNQITTVAPGA 148
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 68.1 bits (167), Expect = 2e-14
Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 37 CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNL 96
C N C IP L + LDL + + +F L L
Sbjct: 3 CVEVVPNIT--YQCMELNFYKIPDNLPFSTKNLDLSFNP-LRHLGSYSFF--SFPELQVL 57
Query: 97 LLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
L C I I+ A+ L L L LT N I +L A S
Sbjct: 58 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Score = 51.6 bits (124), Expect = 1e-08
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
+ L + + F D F T L NL L L C + + P AF+ L L L+++ N
Sbjct: 448 EVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505
Query: 127 IHTLHPDACGLCRS 140
+L S
Sbjct: 506 FFSLDTFPYKCLNS 519
Score = 50.0 bits (120), Expect = 4e-08
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 51 NNTGLSAIPRGLSKD---VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
N+ + + + +LDL +C + AF L +L L + N +D
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN--SLSSLQVLNMSHNNFFSLD 510
Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDACGLCRSML 142
+ L L LD + N I T S L
Sbjct: 511 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545
Score = 49.3 bits (118), Expect = 8e-08
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 5/100 (5%)
Query: 51 NNTGLSAIPRGLSK--DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
+ G+ + +++LD N+ F L NL L + +
Sbjct: 381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFN 438
Query: 109 DAFSGLGILIELDLTKNRIH-TLHPDACGLCRSMLFFYFR 147
F+GL L L + N PD R++ F
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Score = 46.6 bits (111), Expect = 7e-07
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
L L N I AF GL +L L+ + N+ ++ L L EL++ N
Sbjct: 79 STLILTG-NPIQSLALGAFS--GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135
Query: 127 IHTLHPD 133
I +
Sbjct: 136 IQSFKLP 142
Score = 42.3 bits (100), Expect = 2e-05
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
N L P G K ++ L++ + + F + L NL +L L I I
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYCT 167
Query: 110 AFSGLG----ILIELDLTKNRIHTLHPDACGLCR 139
L + + LDL+ N ++ + P A R
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201
Score = 41.6 bits (98), Expect = 3e-05
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID-PDAFSGLGILIELDLTKN 125
Q L + N + L L L + I P+ FS L L LDL+ N
Sbjct: 103 QKLVAVETN-LASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Query: 126 RIHTLHPDA 134
+I +++
Sbjct: 160 KIQSIYCTD 168
Score = 38.5 bits (90), Expect = 3e-04
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 7/89 (7%)
Query: 51 NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID--P 108
N P K ++ L F L +L L L ++
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-----EVDLPSLEFLDLSRNGLSFKGCCS 366
Query: 109 DAFSGLGILIELDLTKNRIHTLHPDACGL 137
+ G L LDL+ N + T+ + GL
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGL 395
Score = 36.9 bits (86), Expect = 0.001
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 4/86 (4%)
Query: 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124
++ L + D F L N+ + L I + FS L+L
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFN--CLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVN 313
Query: 125 NRIHTLHPDACGLCRSMLFFYFREST 150
+ + + F +
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGN 339
Score = 32.3 bits (74), Expect = 0.054
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID------PDAFSGLGILIEL 120
+ L + F + L L NL +++ + +D D F+ L +
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287
Query: 121 DLTKNRIHTLHPDA 134
L I + +
Sbjct: 288 SLVSVTIERVKDFS 301
Score = 28.8 bits (65), Expect = 0.62
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Query: 55 LSAIPRGLSKDV--QYLDLGKCNVIFCFPADAFRS-TGLVNLHNLLLKDCNITDIDPDAF 111
++ I G K++ L L + GL +L + N +++
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248
Query: 112 SGLGILIELDLTKNRIHTLH 131
S L L L + + R+ L
Sbjct: 249 SALEGLCNLTIEEFRLAYLD 268
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 64.5 bits (157), Expect = 4e-13
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
+ GL +P+ LS+ L++ + N I L L L++ I +D
Sbjct: 7 RSKNGLIHVPKDLSQKTTILNISQ-NYISELWTSDIL--SLSKLRILIISHNRIQYLDIS 63
Query: 110 AFSGLGILIELDLTKNRIHTLHPD 133
F L LDL+ N++ +
Sbjct: 64 VFKFNQELEYLDLSHNKLVKISCH 87
Score = 39.8 bits (93), Expect = 1e-04
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 56 SAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG 115
I R L ++ LDL N I P + L L L + + + F L
Sbjct: 413 DTIFRCLPPRIKVLDLH-SNKIKSIPKQVVK---LEALQELNVASNQLKSVPDGIFDRLT 468
Query: 116 ILIELDLTKN 125
L ++ L N
Sbjct: 469 SLQKIWLHTN 478
Score = 35.6 bits (82), Expect = 0.003
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 50 CNNTGLSAIPRGLS-----KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNIT 104
L + + K +Q LD+ + +V + + +L +L + +T
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC--SWTKSLLSLNMSSNILT 412
Query: 105 DIDPDAFSGLGILIELDLTKNRIHTLHPDACGL 137
D + LDL N+I ++ L
Sbjct: 413 DTIFRCLPPR--IKVLDLHSNKIKSIPKQVVKL 443
Score = 35.2 bits (81), Expect = 0.005
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 3/69 (4%)
Query: 66 VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125
+ + + + +L + +TD + L L L L N
Sbjct: 302 MNIKNFT-VSGTRMVHMLCPSK--ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358
Query: 126 RIHTLHPDA 134
++ L A
Sbjct: 359 QLKELSKIA 367
Score = 34.1 bits (78), Expect = 0.011
Identities = 13/89 (14%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 50 CNNTGLSAIPRGLSK---DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
+N L+ +++ L L + N + A +T + +L L + +++
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLIL-QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389
Query: 107 DPD-AFSGLGILIELDLTKNRIHTLHPDA 134
+ S L+ L+++ N +
Sbjct: 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRC 418
Score = 29.4 bits (66), Expect = 0.39
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 75 NVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
+V + + N++ + S + + LD + N + +
Sbjct: 286 DVFGFPQSYIY--EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFEN 343
Query: 135 CG 136
CG
Sbjct: 344 CG 345
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 63.1 bits (154), Expect = 8e-13
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNIT--DID 107
CN+ GL+++P G+ L+L N + P F L L L L ++
Sbjct: 14 CNSKGLTSVPTGIPSSATRLELES-NKLQSLPHGVFD--KLTQLTKLSLSSNGLSFKGCC 70
Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDACGL 137
+ G L LDL+ N + T+ + GL
Sbjct: 71 SQSDFGTTSLKYLDLSFNGVITMSSNFLGL 100
Score = 62.0 bits (151), Expect = 2e-12
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 51 NNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
++T GLS ++ L + + F D F L NL L L C + +
Sbjct: 134 SHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFT--ELRNLTFLDLSQCQLEQL 190
Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDA 134
P AF+ L L L+++ N +L
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFP 218
Score = 58.9 bits (143), Expect = 3e-11
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 51 NNTGLSAIPRGLSKDV---QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
N+ + ++ +LDL +C + AF L +L L + N +D
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN--SLSSLQVLNMSHNNFFSLD 215
Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDA 134
+ L L LD + N I T
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIMTSKKQE 242
Score = 50.0 bits (120), Expect = 4e-08
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 51 NNTGLSAIPRGLSK--DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
+ G+ + +++LD N+ F L NL L + +
Sbjct: 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFN 143
Query: 109 DAFSGLGILIELDLTKNR-IHTLHPDA 134
F+GL L L + N PD
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDI 170
Score = 40.8 bits (96), Expect = 5e-05
Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 7/79 (8%)
Query: 54 GLSAIPRGLSKDV---QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
L + + Q L++ N F ++ L +L L +I
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYK--CLNSLQVLDYSLNHIMTSKKQE 242
Query: 111 FSGLGI-LIELDLTKNRIH 128
L L+LT+N
Sbjct: 243 LQHFPSSLAFLNLTQNDFA 261
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 60.6 bits (147), Expect = 9e-12
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 25/110 (22%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRS---------------------- 87
C + ++ IP L ++ L + AF
Sbjct: 16 CQESKVTEIPSDLPRNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74
Query: 88 -TGLVNLHNLLLKDCN-ITDIDPDAFSGLGILIELDLTKNRIHTLHPDAC 135
+ L LH + ++ N + I+P+AF L L L ++ I L
Sbjct: 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124
Score = 57.5 bits (139), Expect = 1e-10
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 50 CNNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITD 105
+N + I GLS + L L K I AF T L L L + N+ +
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDEL--NLSDNNNLEE 192
Query: 106 IDPDAFSGLGILIELDLTKNRIHTLHPDA 134
+ D F G + LD+++ RIH+L
Sbjct: 193 LPNDVFHGASGPVILDISRTRIHSLPSYG 221
Score = 51.0 bits (122), Expect = 2e-08
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 9/94 (9%)
Query: 51 NNTGLSAIPRG----LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
N L I L K + + + K N + +AF L NL LL+ + I +
Sbjct: 63 QNDVLEVIEADVFSNLPK-LHEIRIEKANNLLYINPEAF--QNLPNLQYLLISNTGIKHL 119
Query: 107 DPDAFSGLGILIELDLTKN-RIHTLHPDA-CGLC 138
+ LD+ N IHT+ ++ GL
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153
Score = 47.1 bits (112), Expect = 3e-07
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 51 NNTGLSAIPRGLSKDV---QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKD-CNITDI 106
L I +++ QYL + I P + L ++D NI I
Sbjct: 88 KANNLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHK--IHSLQKVLLDIQDNINIHTI 144
Query: 107 DPDAFSGLGI-LIELDLTKNRIHTLHPDACGLCRS 140
+ ++F GL + L L KN I +H A +
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179
Score = 41.7 bits (98), Expect = 2e-05
Identities = 15/78 (19%), Positives = 21/78 (26%), Gaps = 4/78 (5%)
Query: 51 NNTGLSAIPRGLSKDVQ--YLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
N G+ I Q L+L N + P D F G L + I +
Sbjct: 162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH--GASGPVILDISRTRIHSLPS 219
Query: 109 DAFSGLGILIELDLTKNR 126
L L +
Sbjct: 220 YGLENLKKLRARSTYNLK 237
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 60.3 bits (146), Expect = 1e-11
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
+N L+ +P+ L + L L + N I L L L L I +D
Sbjct: 38 YSNRNLTHVPKDLPPRTKALSLSQ-NSISELRMPDISF--LSELRVLRLSHNRIRSLDFH 94
Query: 110 AFSGLGILIELDLTKNRIHTL 130
F L LD++ NR+ +
Sbjct: 95 VFLFNQDLEYLDVSHNRLQNI 115
Score = 32.2 bits (73), Expect = 0.052
Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 5/90 (5%)
Query: 37 CKCKWTNGRKGAACNNTGLSA-IPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHN 95
C W ++ L+ + R L V+ LDL N I P D L L
Sbjct: 422 RTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH-NNRIMSIPKDVTH---LQALQE 477
Query: 96 LLLKDCNITDIDPDAFSGLGILIELDLTKN 125
L + + + F L L + L N
Sbjct: 478 LNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 31.8 bits (72), Expect = 0.079
Identities = 10/48 (20%), Positives = 13/48 (27%)
Query: 87 STGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
+ L TD S L L L L +N + A
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396
Score = 29.8 bits (67), Expect = 0.33
Identities = 8/73 (10%), Positives = 18/73 (24%), Gaps = 3/73 (4%)
Query: 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123
K + + V + + ++ +L + I L+ T
Sbjct: 305 KSLMIEHVKN-QVFLFSKEALY--SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFT 361
Query: 124 KNRIHTLHPDACG 136
+N C
Sbjct: 362 QNVFTDSVFQGCS 374
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 58.9 bits (143), Expect = 1e-11
Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 27/124 (21%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRS----- 87
C C C + C GL+ IP L + + + L + N I P AF
Sbjct: 5 CPAACTC---SNNI-VDCRGKGLTEIPTNLPETITEIRLEQ-NTIKVIPPGAFSPYKKLR 59
Query: 88 -----------------TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
GL +L++L+L IT++ F GL L L L N+I+ L
Sbjct: 60 RIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL 119
Query: 131 HPDA 134
DA
Sbjct: 120 RVDA 123
Score = 43.9 bits (104), Expect = 4e-06
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 51 NNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
+N +S + + + L L N I P F GL +L LLL I +
Sbjct: 64 SNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFE--GLFSLQLLLLNANKINCLR 120
Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDA 134
DAF L L L L N++ T+
Sbjct: 121 VDAFQDLHNLNLLSLYDNKLQTIAKGT 147
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 58.9 bits (143), Expect = 2e-11
Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 29/122 (23%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRS----- 87
C+C + + + IP L Q L L + + P+ AF +
Sbjct: 4 SSPPCEC---HQEEDFRVTCKDIQRIP-SLPPSTQTLKLIE-THLRTIPSHAFSNLPNIS 58
Query: 88 ------------------TGLVNLHNLLLKDCN-ITDIDPDAFSGLGILIELDLTKNRIH 128
L + ++ +++ +T IDPDA L +L L + +
Sbjct: 59 RIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118
Query: 129 TL 130
Sbjct: 119 MF 120
Score = 54.2 bits (131), Expect = 8e-10
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 50 CNNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCN-IT 104
+N +++IP +GL + L L N AF T L + L +T
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNGT---KLDAVYLNKNKYLT 193
Query: 105 DIDPDAFSGLG-ILIELDLTKNRIHTLHPDA 134
ID DAF G+ LD+++ + L
Sbjct: 194 VIDKDAFGGVYSGPSLLDVSQTSVTALPSKG 224
Score = 48.5 bits (116), Expect = 9e-08
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 51 NNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCN-ITD 105
N L+ I + L +++L + + FP L + D +T
Sbjct: 89 NTRNLTYIDPDALKELPL-LKFLGIFNTG-LKMFPDLTKVY-STDIFFILEITDNPYMTS 145
Query: 106 IDPDAFSGLG-ILIELDLTKNRIHTLHPDA 134
I +AF GL + L L N ++ A
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175
Score = 46.2 bits (110), Expect = 6e-07
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 51 NNTGLSAIPRG----LSKDVQYLDLGKCNVIFCFPADAFRSTGLVN-LHNLLLKDCNITD 105
NTGL P + L++ + P +AF+ GL N L L + T
Sbjct: 113 FNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ--GLCNETLTLKLYNNGFTS 170
Query: 106 IDPDAFSGLGILIELDLTKNR-IHTLHPDA 134
+ AF+G L + L KN+ + + DA
Sbjct: 171 VQGYAFNGT-KLDAVYLNKNKYLTVIDKDA 199
Score = 34.2 bits (79), Expect = 0.008
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 51 NNTGLSAIPRG---LSKDVQYLDLGKCNVIFCFPADAFRSTGLVN-LHNLLLKDCNITDI 106
N G +++ +K + + L K + DAF G+ + L + ++T +
Sbjct: 164 YNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFG--GVYSGPSLLDVSQTSVTAL 220
Query: 107 DPDAFSGLGILIELDL 122
L LI +
Sbjct: 221 PSKGLEHLKELIARNT 236
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 56.9 bits (138), Expect = 1e-10
Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 25/127 (19%)
Query: 30 TGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRS-- 87
+C C N + C++ L+AIP + D + LDL N + P+ AF
Sbjct: 5 CKKDGGVCSC--NNNKNSVDCSSKKLTAIPSNIPADTKKLDLQS-NKLSSLPSKAFHRLT 61
Query: 88 --------------------TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
L NL L + D + + F L L EL L +N++
Sbjct: 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121
Query: 128 HTLHPDA 134
+L P
Sbjct: 122 KSLPPRV 128
Score = 51.1 bits (123), Expect = 1e-08
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 50 CNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
+ L A+P G+ ++ L L N + P F L L L L + +
Sbjct: 92 VTDNKLQALPIGVFDQLVNLAELRLD-RNQLKSLPPRVF--DSLTKLTYLSLGYNELQSL 148
Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDA 134
F L L EL L N++ + A
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLKRVPEGA 176
Score = 44.2 bits (105), Expect = 3e-06
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 50 CNNTGLSAIPRG----LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITD 105
+ L ++P L+K + YL LG N + P F L +L L L + +
Sbjct: 116 LDRNQLKSLPPRVFDSLTK-LTYLSLGY-NELQSLPKGVFD--KLTSLKELRLYNNQLKR 171
Query: 106 IDPDAFSGLGILIELDLTKNRIHTLHPDA 134
+ AF L L L L N++ + A
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGA 200
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 56.6 bits (137), Expect = 1e-10
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 3/100 (3%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
CE + C G+K C L ++P G+ D + LDL + FR GL
Sbjct: 4 CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQS-TGLATLSDATFR--GLTK 60
Query: 93 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L L L + + F L L L L N++ +L
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100
Score = 33.5 bits (77), Expect = 0.016
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 50 CNNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
+ L + G+ ++ L L N + P F L L L L + +
Sbjct: 66 LDYNQLQTLSAGVFDDLTELGTLGLAN-NQLASLPLGVF--DHLTQLDKLYLGGNQLKSL 122
Query: 107 DPDAFSGLGILIELDLTKNRIHTL 130
F L L EL L N++ ++
Sbjct: 123 PSGVFDRLTKLKELRLNTNQLQSI 146
Score = 32.4 bits (74), Expect = 0.044
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 50 CNNTGLSAIPRG----LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITD 105
N L+++P G L++ + L LG N + P+ F L L L L +
Sbjct: 90 LANNQLASLPLGVFDHLTQ-LDKLYLG-GNQLKSLPSGVFDR--LTKLKELRLNTNQLQS 145
Query: 106 IDPDAFSGLGILIELDLTKNRI 127
I AF L L L L+ N++
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQL 167
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 56.5 bits (136), Expect = 2e-10
Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 9/105 (8%)
Query: 37 CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKC-------NVIFCFPADAFRSTG 89
KC +N + + + + + + + L + + PA
Sbjct: 16 YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD--S 73
Query: 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
+ L L D I +ID AF+ + +L + N I L P
Sbjct: 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 118
Score = 56.5 bits (136), Expect = 3e-10
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 51 NNTGLSAIPRGLSKD---VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
N+ + +P L V+ L+L I AF + L + I +
Sbjct: 59 KNSTMRKLPAALLDSFRQVELLNLND-LQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLP 115
Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDA 134
P F + +L L L +N + +L
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSSLPRGI 142
Score = 55.7 bits (134), Expect = 4e-10
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 55 LSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111
+ I + +Q L +G N I P F+ + L L+L+ +++ + F
Sbjct: 87 IEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIF 143
Query: 112 SGLGILIELDLTKNRIHTLHPDA 134
L L ++ N + + D
Sbjct: 144 HNTPKLTTLSMSNNNLERIEDDT 166
Score = 54.5 bits (131), Expect = 1e-09
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 51 NNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
+ +P + + L L + N + P F L L + + N+ I+
Sbjct: 107 GFNAIRYLPPHVFQNVPLLTVLVLER-NDLSSLPRGIFH--NTPKLTTLSMSNNNLERIE 163
Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDA 134
D F L L L+ NR+ +
Sbjct: 164 DDTFQATTSLQNLQLSSNRLTHVDLSL 190
Score = 51.5 bits (123), Expect = 2e-08
Identities = 12/87 (13%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 51 NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
++ ++ + ++ ++ L L N+ L + L + I
Sbjct: 219 SHNSINVVRGPVNVELTILKLQHNNLT---DTAWLL--NYPGLVEVDLSYNELEKIMYHP 273
Query: 111 FSGLGILIELDLTKNRIHTLHPDACGL 137
F + L L ++ NR+ L+ +
Sbjct: 274 FVKMQRLERLYISNNRLVALNLYGQPI 300
Score = 50.7 bits (121), Expect = 2e-08
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
+DL N + F + L L + + + + + L LDL+ N
Sbjct: 257 VEVDLSY-NELEKIMYHPFV--KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNH 312
Query: 127 IHTLHPDACGL 137
+ + +
Sbjct: 313 LLHVERNQPQF 323
Score = 46.5 bits (110), Expect = 8e-07
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 55 LSAIPRGLSKDV---QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111
LS++PRG+ + L + N + D F+ +L NL L +T +D
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVDLSLI 191
Query: 112 SGLGILIELDLTKNRIHTLHP 132
L +++ N + TL
Sbjct: 192 PS---LFHANVSYNLLSTLAI 209
Score = 42.6 bits (100), Expect = 2e-05
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 51 NNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
+N L A+ ++ LDL N + + L NL L +I +
Sbjct: 286 SNNRLVALNLYGQPIPTLKVLDLSH-NHLLHVERNQP---QFDRLENLYLDHNSIVTLKL 341
Query: 109 DAFSGLGILIELDLTKNRIH 128
L L L+ N
Sbjct: 342 STHHT---LKNLTLSHNDWD 358
Score = 39.9 bits (93), Expect = 2e-04
Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 27/99 (27%)
Query: 55 LSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGL 114
L+ + L + + ++ N++ + + L +I + L
Sbjct: 183 LTHVDLSLIPSLFHANVSY-NLLSTLAI-------PIAVEELDASHNSINVVRGPVNVEL 234
Query: 115 GI-------------------LIELDLTKNRIHTLHPDA 134
I L+E+DL+ N + +
Sbjct: 235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHP 273
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 55.9 bits (135), Expect = 4e-10
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 37 CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNL 96
+C + A C N GL +P L V Y+DL N I +F L +L L
Sbjct: 6 SEC--SVIGYNAICINRGLHQVP-ELPAHVNYVDLSL-NSIAELNETSFS--RLQDLQFL 59
Query: 97 LLKDCNI-TDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
++ I + F GL LI L L N+ L A
Sbjct: 60 KVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA 98
Score = 54.8 bits (132), Expect = 1e-09
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 50 CNNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
+ + + A+ + + D++ L L + N I +AF GL +L L L + I
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQ-NEINKIDDNAFW--GLTHLLKLNLSQNFLGSI 338
Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDA 134
D F L L LDL+ N I L +
Sbjct: 339 DSRMFENLDKLEVLDLSYNHIRALGDQS 366
Score = 49.7 bits (119), Expect = 5e-08
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 55 LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
++ I GL+ + L+L + N + + F L L L L +I + +
Sbjct: 311 INKIDDNAFWGLTH-LLKLNLSQ-NFLGSIDSRMFE--NLDKLEVLDLSYNHIRALGDQS 366
Query: 111 FSGLGILIELDLTKNRIHTLHPDA 134
F GL L EL L N++ ++
Sbjct: 367 FLGLPNLKELALDTNQLKSVPDGI 390
Score = 47.4 bits (113), Expect = 4e-07
Identities = 25/90 (27%), Positives = 31/90 (34%), Gaps = 10/90 (11%)
Query: 51 NNTGLSAIPRG----LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITD- 105
T I LS + L L N AF GL NL L L CN+
Sbjct: 63 QQTPGLVIRNNTFRGLSS-LIILKLDY-NQFLQLETGAFN--GLANLEVLTLTQCNLDGA 118
Query: 106 -IDPDAFSGLGILIELDLTKNRIHTLHPDA 134
+ + F L L L L N I + P +
Sbjct: 119 VLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Score = 46.3 bits (110), Expect = 8e-07
Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 1/101 (0%)
Query: 35 HLCKCKWTNGRKGAACNNTGLSAIPR-GLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNL 93
L + + + I LS F+ +
Sbjct: 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277
Query: 94 HNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
L I + FS L +L L +N I+ + +A
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318
Score = 44.7 bits (106), Expect = 3e-06
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 55 LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
L +I L K ++ LDL N I +F GL NL L L + +
Sbjct: 335 LGSIDSRMFENLDK-LEVLDLS-YNHIRALGDQSF--LGLPNLKELALDTNQLKSVPDGI 390
Query: 111 FSGLGILIELDLTKN 125
F L L ++ L N
Sbjct: 391 FDRLTSLQKIWLHTN 405
Score = 40.9 bits (96), Expect = 6e-05
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 55 LSAIP----RGLSKDVQYLDLGKCNVI-FCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
+ GL+ ++ L L +CN+ + F+ L +L L+L+D NI I P
Sbjct: 91 FLQLETGAFNGLAN-LEVLTLTQCNLDGAVLSGNFFK--PLTSLEMLVLRDNNIKKIQPA 147
Query: 110 -AFSGLGILIELDLTKNRIHTLHPDA 134
F + LDLT N++ ++ +
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEED 173
Score = 36.6 bits (85), Expect = 0.002
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 4/80 (5%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI--LIELDLTK 124
+ L L N+ PA F + H L L + I + L L+
Sbjct: 132 EMLVLRDNNIKKIQPASFF--LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189
Query: 125 NRIHTLHPDACGLCRSMLFF 144
+ ++ G + F
Sbjct: 190 ITLQDMNEYWLGWEKCGNPF 209
Score = 33.6 bits (77), Expect = 0.016
Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 9/76 (11%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP--------DAFSGLGILI 118
LDL N + + + + L L + D++ +
Sbjct: 157 HVLDLTF-NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT 215
Query: 119 ELDLTKNRIHTLHPDA 134
LDL+ N
Sbjct: 216 TLDLSGNGFKESMAKR 231
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 55.6 bits (134), Expect = 5e-10
Identities = 26/104 (25%), Positives = 36/104 (34%), Gaps = 25/104 (24%)
Query: 50 CNNTGLSAIPRGLS-----------------------KDVQYLDLGKCNVIFCFPADAFR 86
L+ +P+ L+ + +Q L+LG +AFR
Sbjct: 11 YRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR 70
Query: 87 STGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L NL L L I + PDAF GL L EL L +
Sbjct: 71 --NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112
Score = 54.8 bits (132), Expect = 1e-09
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 2/101 (1%)
Query: 35 HLCKCKWTNGRKGAACNN-TGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNL 93
+ WT G N + A L+ + G + I + F ++
Sbjct: 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF-HNIKDPDQNTFAGLARSSV 268
Query: 94 HNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
+L L + ++ F L L L+L N+I+ + +A
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309
Score = 52.5 bits (126), Expect = 6e-09
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 66 VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125
V++LDL +F + F L +L L L I I +AF GL L L+L+ N
Sbjct: 268 VRHLDLSHGF-VFSLNSRVFE--TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
Query: 126 RIHTLHPDA 134
+ L+
Sbjct: 325 LLGELYSSN 333
Score = 51.7 bits (124), Expect = 1e-08
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123
KD++ L+L I +AF GL NL L L + ++ F GL + +DL
Sbjct: 290 KDLKVLNLAYNK-INKIADEAFY--GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346
Query: 124 KNRIHTLHPDACGLCRSMLFFYF 146
KN I + +
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDL 369
Score = 51.3 bits (123), Expect = 2e-08
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 50 CNNTGLSAIPR----GLSKDVQYLDLGKCN----VIFCFPADAFRSTGLVNLHNLLLKDC 101
N S+ + ++ L LG+ D F GL +L L L
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE--GLSHLQVLYLNHN 490
Query: 102 NITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
+ + P FS L L L L NR+ L +
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523
Score = 49.0 bits (117), Expect = 1e-07
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123
++Q L+L N++ + F GL + + L+ +I I F L L LDL
Sbjct: 314 DNLQVLNLSY-NLLGELYSSNF--YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370
Query: 124 KNRIHTLH 131
N + T+H
Sbjct: 371 DNALTTIH 378
Score = 47.5 bits (113), Expect = 4e-07
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 60 RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIE 119
GLS +Q L L + P F + L L L L +T + + L
Sbjct: 477 EGLSH-LQVLYLNHNY-LNSLPPGVF--SHLTALRGLSLNSNRLTVLSHNDLPAN--LEI 530
Query: 120 LDLTKNRIHTLHPDACGLCRSMLF 143
LD+++N++ +PD +
Sbjct: 531 LDISRNQLLAPNPDVFVSLSVLDI 554
Score = 46.7 bits (111), Expect = 6e-07
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITD--IDPDAFSGLGILIELDLTK 124
+ LDLG + I+ DAF+ GL +L L L C ++D + F L L LDL+K
Sbjct: 76 RILDLGS-SKIYFLHPDAFQ--GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132
Query: 125 NRIHTLHPDA 134
N+I +L+
Sbjct: 133 NQIRSLYLHP 142
Score = 43.3 bits (102), Expect = 1e-05
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Query: 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI--LIELD 121
K + LDL K + + +F L +L ++ I + L L
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFG--KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 122 LTKNRIHTLHPDACGLCRSML 142
L N +++ G C +
Sbjct: 181 LAANSLYSRVSVDWGKCMNPF 201
Score = 39.4 bits (92), Expect = 2e-04
Identities = 10/75 (13%), Positives = 18/75 (24%), Gaps = 7/75 (9%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG------ILIEL 120
+ +D N IF L L ++ + +L L
Sbjct: 151 KSIDFSS-NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209
Query: 121 DLTKNRIHTLHPDAC 135
D++ N
Sbjct: 210 DVSGNGWTVDITGNF 224
Score = 38.2 bits (89), Expect = 5e-04
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123
V Y+DL K N I F+ L L L L+D +T I + + ++ L+
Sbjct: 338 PKVAYIDLQK-NHIAIIQDQTFK--FLEKLQTLDLRDNALTTI-----HFIPSIPDIFLS 389
Query: 124 KNRIHTLHPDACGL 137
N++ TL
Sbjct: 390 GNKLVTLPKINLTA 403
Score = 33.2 bits (76), Expect = 0.028
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 88 TGLVNLHNLLLKDCNITDIDPDA-FSGLGILIELDLTKNRIHTLHPDAC 135
+ +L L+L + D S L +L L +N +
Sbjct: 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471
Score = 31.7 bits (72), Expect = 0.084
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
+ L N + P + + +L L++ +I + L L L +NR
Sbjct: 384 PDIFLS-GNKLVTLPKINLTANLI-HLSENRLENLDILYF----LLRVPHLQILILNQNR 437
Query: 127 IHTLHPDAC 135
+ D
Sbjct: 438 FSSCSGDQT 446
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 55.1 bits (133), Expect = 6e-10
Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 9/105 (8%)
Query: 37 CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKC-------NVIFCFPADAFRSTG 89
KC +N + + + + + + + L + + PA
Sbjct: 10 YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL--DS 67
Query: 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
+ L L D I +ID AF+ + +L + N I L P
Sbjct: 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 112
Score = 53.9 bits (130), Expect = 2e-09
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 55 LSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111
+ I + +Q L +G N I P F+ + L L+L+ +++ + F
Sbjct: 81 IEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIF 137
Query: 112 SGLGILIELDLTKNRIHTLHPDA 134
L L ++ N + + D
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDT 160
Score = 52.4 bits (126), Expect = 5e-09
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 51 NNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
+ +P + + L L + N + P F L L + + N+ I+
Sbjct: 101 GFNAIRYLPPHVFQNVPLLTVLVLER-NDLSSLPRGIFH--NTPKLTTLSMSNNNLERIE 157
Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDA 134
D F L L L+ NR+ +
Sbjct: 158 DDTFQATTSLQNLQLSSNRLTHVDLSL 184
Score = 50.0 bits (120), Expect = 4e-08
Identities = 12/87 (13%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 51 NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
++ ++ + ++ ++ L L N+ L + L + I
Sbjct: 213 SHNSINVVRGPVNVELTILKLQHNNLT---DTAWLL--NYPGLVEVDLSYNELEKIMYHP 267
Query: 111 FSGLGILIELDLTKNRIHTLHPDACGL 137
F + L L ++ NR+ L+ +
Sbjct: 268 FVKMQRLERLYISNNRLVALNLYGQPI 294
Score = 49.7 bits (119), Expect = 6e-08
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
+DL N + F + L L + + + + + L LDL+ N
Sbjct: 251 VEVDLSY-NELEKIMYHPFV--KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNH 306
Query: 127 IHTLHPDACGL 137
+ + +
Sbjct: 307 LLHVERNQPQF 317
Score = 45.4 bits (108), Expect = 1e-06
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 55 LSAIPRGLSKDV---QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111
LS++PRG+ + L + N + D F+ +L NL L +T +D
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVDLSLI 185
Query: 112 SGLGILIELDLTKNRIHTLHP 132
L +++ N + TL
Sbjct: 186 PS---LFHANVSYNLLSTLAI 203
Score = 40.0 bits (94), Expect = 1e-04
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 51 NNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
+N L A+ ++ LDL N + + L NL L +I +
Sbjct: 280 SNNRLVALNLYGQPIPTLKVLDLSH-NHLLHVERNQP---QFDRLENLYLDHNSIVTLKL 335
Query: 109 DAFSGLGILIELDLTKNRIH 128
L L L+ N
Sbjct: 336 STHHT---LKNLTLSHNDWD 352
Score = 38.9 bits (91), Expect = 2e-04
Identities = 9/80 (11%), Positives = 24/80 (30%), Gaps = 11/80 (13%)
Query: 51 NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
++ L+ + L + + ++ N++ + + L +I +
Sbjct: 173 SSNRLTHVDLSLIPSLFHANVSY-NLLSTLA-------IPIAVEELDASHNSINVVRGPV 224
Query: 111 FSGLGILIELDLTKNRIHTL 130
L L L N +
Sbjct: 225 NVE---LTILKLQHNNLTDT 241
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 51.6 bits (124), Expect = 8e-09
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 50 CNNTGLSAIP---RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
++ L ++P + L LD+ N + P A R GL L L LK + +
Sbjct: 84 LSHNQLQSLPLLGQTLPAL-TVLDVS-FNRLTSLPLGALR--GLGELQELYLKGNELKTL 139
Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDA 134
P + L +L L N + L
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGL 167
Score = 49.3 bits (118), Expect = 5e-08
Identities = 29/145 (20%), Positives = 40/145 (27%), Gaps = 48/145 (33%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRS----- 87
CE C+ L+A+P L KD L L + N+++ F
Sbjct: 4 CEVSKVASHLE----VNCDKRNLTALPPDLPKDTTILHLSE-NLLYTFSLATLMPYTRLT 58
Query: 88 --------------------------------------TGLVNLHNLLLKDCNITDIDPD 109
L L L + +T +
Sbjct: 59 QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 110 AFSGLGILIELDLTKNRIHTLHPDA 134
A GLG L EL L N + TL P
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGL 143
Score = 45.5 bits (108), Expect = 1e-06
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 55 LSAIPRG----LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
L+++P G L + +Q L L N + P L L L + N+T++
Sbjct: 112 LTSLPLGALRGLGE-LQELYLKG-NELKTLPPGLLT--PTPKLEKLSLANNNLTELPAGL 167
Query: 111 FSGLGILIELDLTKNRIHTLHPDA 134
+GL L L L +N ++T+
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGF 191
Score = 29.3 bits (66), Expect = 0.42
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 55 LSAIPRG----LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
L +P G K ++ L L N + PA GL NL LLL++ ++ I
Sbjct: 136 LKTLPPGLLTPTPK-LEKLSLA-NNNLTELPAGLLN--GLENLDTLLLQENSLYTIPKGF 191
Query: 111 FSGLGILIELDLTKN 125
F G +L L N
Sbjct: 192 F-GSHLLPFAFLHGN 205
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 51.4 bits (123), Expect = 1e-08
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 55 LSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGL 114
+ + G S ++ L N I + N+ L + IT +
Sbjct: 92 VQELLVGPS--IETLHAAN-NNISRVSCSRGQ-----GKKNIYLANNKITMLRDLDEGCR 143
Query: 115 GILIELDLTKNRIHTLHPDAC 135
+ LDL N I T++
Sbjct: 144 SRVQYLDLKLNEIDTVNFAEL 164
Score = 51.0 bits (122), Expect = 2e-08
Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 54 GLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSG 113
+ I + ++ + + + + A + N+ L L ++ I +
Sbjct: 1 AIHEIKQNGNR-YKIEKVT-DSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAP 56
Query: 114 LGILIELDLTKNRIHTLHP 132
L L+L+ N ++
Sbjct: 57 FTKLELLNLSSNVLYETLD 75
Score = 47.1 bits (112), Expect = 4e-07
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 4/86 (4%)
Query: 51 NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
N +S + + + + L N I + L LK I ++
Sbjct: 107 ANNNISRVSCSRGQGKKNIYLAN-NKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAE 163
Query: 111 FSG-LGILIELDLTKNRIHTLHPDAC 135
+ L L+L N I+ +
Sbjct: 164 LAASSDTLEHLNLQYNFIYDVKGQVV 189
Score = 44.5 bits (105), Expect = 4e-06
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 6/77 (7%)
Query: 61 GLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIEL 120
S +++L+L N I+ L L L + + F + +
Sbjct: 166 ASSDTLEHLNLQY-NFIYDVKGQVV----FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWI 219
Query: 121 DLTKNRIHTLHPDACGL 137
L N++ +
Sbjct: 220 SLRNNKLVLIEKALRFS 236
Score = 43.7 bits (103), Expect = 6e-06
Identities = 6/45 (13%), Positives = 13/45 (28%)
Query: 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
+ D ++ + ELDL+ N + +
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD 53
Score = 40.6 bits (95), Expect = 7e-05
Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 8/85 (9%)
Query: 51 NNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
++ L L + +V+ LDL N + A L L L + +
Sbjct: 18 TDSSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLA--PFTKLELLNLSSNVLYETL 74
Query: 108 PDAFSGLGILIELDLTKNRIHTLHP 132
L L LDL N + L
Sbjct: 75 D--LESLSTLRTLDLNNNYVQELLV 97
Score = 36.4 bits (84), Expect = 0.002
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 6/83 (7%)
Query: 51 NNTGLSAIPRGLS-KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
+ + + ++ LDL N + F + + L++ + I
Sbjct: 177 QYNFIYDVKGQVVFAKLKTLDLSS-NKLAFMG-PEF--QSAAGVTWISLRNNKLVLI-EK 231
Query: 110 AFSGLGILIELDLTKNRIHTLHP 132
A L DL N H
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTL 254
Score = 36.0 bits (83), Expect = 0.003
Identities = 3/46 (6%), Positives = 8/46 (17%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
+ + I L+ K + +
Sbjct: 334 NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 50.0 bits (120), Expect = 2e-08
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLV 91
DC +C C+ T C GL IPR + L L N + +D L
Sbjct: 1 DCPAMCHCEGTTVD----CTGRGLKEIPRDIPLHTTELLL-NDNELGRISSDGLFG-RLP 54
Query: 92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
+L L LK +T I+P+AF G + EL L +N+I +
Sbjct: 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Score = 28.0 bits (63), Expect = 1.1
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 55 LSAIPRG----LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
L+ I S +Q L LG N I F GL L L L D I+ + P +
Sbjct: 66 LTGIEPNAFEGASH-IQELQLG-ENKIKEISNKMF--LGLHQLKTLNLYDNQISCVMPGS 121
Query: 111 FSGLGILIELDLTKN 125
F L L L+L N
Sbjct: 122 FEHLNSLTSLNLASN 136
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 49.6 bits (119), Expect = 5e-08
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 8/80 (10%)
Query: 55 LSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGL 114
+ + G S ++ L N I + N+ L + IT +
Sbjct: 92 VQELLVGPS--IETLHAAN-NNISRVSCSRGQ-----GKKNIYLANNKITMLRDLDEGCR 143
Query: 115 GILIELDLTKNRIHTLHPDA 134
+ LDL N I T++
Sbjct: 144 SRVQYLDLKLNEIDTVNFAE 163
Score = 49.2 bits (118), Expect = 6e-08
Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 54 GLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSG 113
+ I + ++ + + + + A + N+ L L ++ I +
Sbjct: 1 AIHEIKQNGNR-YKIEKVT-DSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAP 56
Query: 114 LGILIELDLTKNRIHTLHP 132
L L+L+ N ++
Sbjct: 57 FTKLELLNLSSNVLYETLD 75
Score = 46.5 bits (111), Expect = 6e-07
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 4/86 (4%)
Query: 51 NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
N +S + + + + L N I + L LK I ++
Sbjct: 107 ANNNISRVSCSRGQGKKNIYLAN-NKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAE 163
Query: 111 FSG-LGILIELDLTKNRIHTLHPDAC 135
+ L L+L N I+ +
Sbjct: 164 LAASSDTLEHLNLQYNFIYDVKGQVV 189
Score = 43.4 bits (103), Expect = 7e-06
Identities = 10/71 (14%), Positives = 21/71 (29%), Gaps = 6/71 (8%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
++L+L N I+ L L L + + F + + L N+
Sbjct: 172 EHLNLQY-NFIYDVKGQVV----FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNK 225
Query: 127 IHTLHPDACGL 137
+ +
Sbjct: 226 LVLIEKALRFS 236
Score = 43.1 bits (102), Expect = 8e-06
Identities = 6/51 (11%), Positives = 13/51 (25%)
Query: 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
+ D ++ + ELDL+ N + +
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59
Score = 42.7 bits (101), Expect = 1e-05
Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 8/85 (9%)
Query: 51 NNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
++ L L + +V+ LDL N + A L L L + +
Sbjct: 18 TDSSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLA--PFTKLELLNLSSNVLYETL 74
Query: 108 PDAFSGLGILIELDLTKNRIHTLHP 132
L L LDL N + L
Sbjct: 75 D--LESLSTLRTLDLNNNYVQELLV 97
Score = 35.7 bits (83), Expect = 0.003
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 55 LSAIPRGLS-KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSG 113
+ + + ++ LDL N + F + + L++ + I A
Sbjct: 181 IYDVKGQVVFAKLKTLDLSS-NKLAFMG-PEF--QSAAGVTWISLRNNKLVLI-EKALRF 235
Query: 114 LGILIELDLTKNRIHTL 130
L DL N H
Sbjct: 236 SQNLEHFDLRGNGFHCG 252
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 47.6 bits (113), Expect = 3e-07
Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 8/95 (8%)
Query: 55 LSAIPRGLS----KDVQYLDLGKCNVIFCFPADAFRSTG---LVNLHNLLLKDCNITDID 107
L IP + + +D N I + S +N + L I
Sbjct: 631 LKYIPNIFNAKSVYVMGSVDFSY-NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689
Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDACGLCRSML 142
+ F+ + + L+ N + ++ ++
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724
Score = 44.9 bits (106), Expect = 3e-06
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 8/86 (9%)
Query: 55 LSAIPRGLS----KDVQYLDLGKCNVIFCFPADAFRSTGLVNL---HNLLLKDCNITDID 107
L+++ + +D+ N FP S+ L H + I
Sbjct: 740 LTSLSDDFRATTLPYLSNMDVSY-NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798
Query: 108 PDAFSGLGILIELDLTKNRIHTLHPD 133
P + LI+L + N I +
Sbjct: 799 PTGITTCPSLIQLQIGSNDIRKVDEK 824
Score = 43.3 bits (102), Expect = 1e-05
Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 6/107 (5%)
Query: 43 NGRKGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKD 100
N AA + + +Q +G N + FPA A +V L L
Sbjct: 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQ-KMVKLGLLDCVH 582
Query: 101 CNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFR 147
+ ++ AF L +L L N+I + D C + F
Sbjct: 583 NKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627
Score = 42.2 bits (99), Expect = 2e-05
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCR 139
V L +L L I +I D + + L + N++ + P+
Sbjct: 593 TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKS 642
Score = 41.4 bits (97), Expect = 4e-05
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI-------DPDAFSGLGILIE 119
+ L N I FP + F + + ++L + +T I + +L
Sbjct: 676 STVTLSY-NEIQKFPTELFAT--GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732
Query: 120 LDLTKNRIHTLHPD 133
+DL N++ +L D
Sbjct: 733 IDLRFNKLTSLSDD 746
Score = 39.9 bits (93), Expect = 1e-04
Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 10/92 (10%)
Query: 55 LSAIPRGLSKD---VQYLDLGKCNVIFCFPADAFRS-----TGLVNLHNLLLKDCNITDI 106
+ P L + + L N++ P ++ + L + L+ +T +
Sbjct: 685 IQKFPTELFATGSPISTIIL-SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743
Query: 107 DPD-AFSGLGILIELDLTKNRIHTLHPDACGL 137
D + L L +D++ N +
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCFSSFPTQPLNS 775
Score = 39.9 bits (93), Expect = 2e-04
Identities = 14/109 (12%), Positives = 27/109 (24%), Gaps = 20/109 (18%)
Query: 50 CNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRST-----------------GL 90
++ I + + +Q + L
Sbjct: 432 NLTNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNL 490
Query: 91 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCR 139
+L ++ L +C PD L L L++ NR + R
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539
Score = 34.9 bits (80), Expect = 0.008
Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 12/87 (13%)
Query: 55 LSAIPRGLS--KDVQYLDLGK-----CNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
S+ P ++ + N I + +L L + +I +D
Sbjct: 765 FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT--CPSLIQLQIGSNDIRKVD 822
Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDA 134
L LD+ N ++ +
Sbjct: 823 EKLTPQLY---ILDIADNPNISIDVTS 846
Score = 34.1 bits (78), Expect = 0.014
Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK-- 124
+DL N + D FR+T L L N+ + + P L +
Sbjct: 731 TTIDLRF-NKLTSLSDD-FRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQR 787
Query: 125 ----NRIHTLHPDACGLCRS 140
NRI P C S
Sbjct: 788 DAEGNRILRQWPTGITTCPS 807
Score = 33.7 bits (77), Expect = 0.018
Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 4/99 (4%)
Query: 51 NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
L R D+ + + + D+ S + NL IT I A
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL---TNRITFI-SKA 443
Query: 111 FSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149
L L + + + + + E+
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482
Score = 32.9 bits (75), Expect = 0.034
Identities = 9/59 (15%), Positives = 13/59 (22%)
Query: 92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFREST 150
+ L L PDA L L L + + R+
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382
Score = 30.2 bits (68), Expect = 0.25
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 8/82 (9%)
Query: 51 NNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
N L P G++ + L +G N I L+ L + D ID
Sbjct: 791 GNRILRQWPTGITTCPSLIQLQIG-SNDIRKVDEKL-----TPQLYILDIADNPNISIDV 844
Query: 109 DAFSGLGILIELDLTKNRIHTL 130
+ L ++ +
Sbjct: 845 TSVCPYIEAGMYVLLYDKTQDI 866
Score = 29.5 bits (66), Expect = 0.52
Identities = 17/89 (19%), Positives = 22/89 (24%), Gaps = 14/89 (15%)
Query: 39 CKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLL 98
W + G +N G V L L P DA L L L
Sbjct: 309 DMW-GDQPGVDLDNNG----------RVTGLSLAGFGAKGRVP-DAIGQ--LTELKVLSF 354
Query: 99 KDCNITDIDPDAFSGLGILIELDLTKNRI 127
+ T + K+RI
Sbjct: 355 GTHSETVSGRLFGDEELTPDMSEERKHRI 383
Score = 27.1 bits (60), Expect = 2.9
Identities = 8/40 (20%), Positives = 10/40 (25%)
Query: 95 NLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
N + D G + L L PDA
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA 342
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 44.6 bits (106), Expect = 2e-06
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
C+N GL +P+G+ +DV L L N P +L + L + I+ +
Sbjct: 17 CSNKGLKVLPKGIPRDVTELYL-DGNQFTLVPK-ELS--NYKHLTLIDLSNNRISTLSNQ 72
Query: 110 AFSGLGILIELDLTKNRIHTLHP 132
+FS + L+ L L+ NR+ + P
Sbjct: 73 SFSNMTQLLTLILSYNRLRCIPP 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 42.8 bits (100), Expect = 1e-05
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 50 CNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
+ G+S I GL ++ L LG N I + L L L L+D I+DI
Sbjct: 116 LEHNGISDIN-GLVHLPQLESLYLGN-NKITDITVLS----RLTKLDTLSLEDNQISDIV 169
Query: 108 PDAFSGLGILIELDLTKNRIHTLHP 132
P +GL L L L+KN I L
Sbjct: 170 P--LAGLTKLQNLYLSKNHISDLRA 192
Score = 42.4 bits (99), Expect = 2e-05
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L L +L L+ I+DI+ L L L L N+I +
Sbjct: 107 DLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITV 148
Score = 38.9 bits (90), Expect = 2e-04
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 50 CNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
NN+ + ++ G+ +V L L + P L NL L L + I D+
Sbjct: 50 ANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLT-----NLKNLGWLFLDENKIKDLS 103
Query: 108 PDAFSGLGILIELDLTKNRIHTLHP 132
L L L L N I ++
Sbjct: 104 S--LKDLKKLKSLSLEHNGISDING 126
Score = 38.9 bits (90), Expect = 3e-04
Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123
+ +L K +V + L ++ ++ + +I + L + +L L
Sbjct: 21 AETIKDNLKKKSVTDAVTQN-----ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 73
Query: 124 KNRIHTLHPDA 134
N++ + P
Sbjct: 74 GNKLTDIKPLT 84
Score = 35.5 bits (81), Expect = 0.005
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
GL L NL L +I+D+ +GL L L+L
Sbjct: 173 GLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPI 214
Score = 32.4 bits (73), Expect = 0.054
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 93 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
+ + I I PD I+ +L K +
Sbjct: 1 MGETITVSTPIKQIFPD--DAFAETIKDNLKKKSVTDAVT 38
Score = 27.0 bits (59), Expect = 2.7
Identities = 10/45 (22%), Positives = 15/45 (33%)
Query: 88 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
GL NL L L + + S L + + T + T
Sbjct: 194 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 42.2 bits (100), Expect = 1e-05
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 50 CNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPAD------AFRSTGLVNLHNLLLKDC 101
L A+P ++ ++ L + C + P + GLVNL +L L+
Sbjct: 134 LARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193
Query: 102 NITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLC 138
I + P + + L L L + + + L P L
Sbjct: 194 GIRSL-PASIANLQNLKSLKIRNSPLSALGPAIHHLP 229
Score = 37.6 bits (88), Expect = 7e-04
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 51 NNTGLSAIPRGL----SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
L A L L+L + FP AFR L +L ++ + + ++
Sbjct: 64 TGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFR---LSHLQHMTIDAAGLMEL 119
Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
PD L L L +N + L P +
Sbjct: 120 -PDTMQQFAGLETLTLARNPLRAL-PASIASLNR 151
Score = 33.0 bits (76), Expect = 0.028
Identities = 10/72 (13%), Positives = 18/72 (25%), Gaps = 3/72 (4%)
Query: 69 LDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 128
++ + D L L+ + PD L L + + +
Sbjct: 60 IETRTGRALKATA-DLLEDATQPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLM 117
Query: 129 TLHPDACGLCRS 140
L PD
Sbjct: 118 EL-PDTMQQFAG 128
Score = 32.6 bits (75), Expect = 0.032
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 50 CNNTGLSAIPRGLSK--DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCN-ITDI 106
N+ LSA+ + ++ LDL C + +P G L L+LKDC+ + +
Sbjct: 213 IRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI---FGGRAPLKRLILKDCSNLLTL 269
Query: 107 DPDAFSGLGILIELDLTKN 125
P L L +LDL
Sbjct: 270 -PLDIHRLTQLEKLDLRGC 287
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 41.2 bits (97), Expect = 3e-05
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
C + G +++P G+ YLDL + N + P F L +L L L + +
Sbjct: 14 CYSQGRTSVPTGIPAQTTYLDL-ETNSLKSLPNGVFD--ELTSLTQLYLGGNKLQSLPNG 70
Query: 110 AFSGLGILIELDLTKNRIHTLHP 132
F+ L L L+L+ N++ +L
Sbjct: 71 VFNKLTSLTYLNLSTNQLQSLPN 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 41.2 bits (97), Expect = 3e-05
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
C + +++P G+ + Q L L N I F L+NL L L + +
Sbjct: 26 CRSKRHASVPAGIPTNAQILYL-HDNQITKLEPGVFD--SLINLKELYLGSNQLGALPVG 82
Query: 110 AFSGLGILIELDLTKNRIHTLHP 132
F L L LDL N++ L
Sbjct: 83 VFDSLTQLTVLDLGTNQLTVLPS 105
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 41.2 bits (97), Expect = 4e-05
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
Q + +G N + FP + + L L + AF L L+L N+
Sbjct: 308 QIIYIGYNN-LKTFPVETSLQ-KMKKLGMLECLYNQLEGK-LPAFGSEIKLASLNLAYNQ 364
Query: 127 IHTLHPDACGLCRSMLFFYF 146
I + + CG + F
Sbjct: 365 ITEIPANFCGFTEQVENLSF 384
Score = 40.8 bits (96), Expect = 7e-05
Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 12/96 (12%)
Query: 55 LSAIPR---GLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111
++ IP G ++ V+ L N + P + + + I +D F
Sbjct: 365 ITEIPANFCGFTEQVENLSFAH-NKLKYIPNIFDAK-SVSVMSAIDFSYNEIGSVDGKNF 422
Query: 112 SGLGI-------LIELDLTKNRIHTLHPDACGLCRS 140
L + ++L+ N+I +
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458
Score = 40.0 bits (94), Expect = 1e-04
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 10/92 (10%)
Query: 55 LSAIPRGLS----KDVQYLDLGKCNVIFCFPADAFRS-----TGLVNLHNLLLKDCNITD 105
L IP + +D N I F +N+ ++ L + I+
Sbjct: 389 LKYIPNIFDAKSVSVMSAIDFSY-NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447
Query: 106 IDPDAFSGLGILIELDLTKNRIHTLHPDACGL 137
+ FS L ++L N + + ++
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479
Score = 39.3 bits (92), Expect = 2e-04
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 8/83 (9%)
Query: 55 LSAIPRGLS----KDVQYLDLGKCNVIFCFPADAFRSTGLVNL---HNLLLKDCNITDID 107
L+ + + +DL + FP S+ L + +
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558
Query: 108 PDAFSGLGILIELDLTKNRIHTL 130
P+ + L +L + N I +
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRKV 581
Score = 36.9 bits (86), Expect = 0.001
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 52 NTGLSAIPRGLSKDV--QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI--- 106
+ K + ++L I FP + F + L ++ L +T+I
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELF--STGSPLSSINLMGNMLTEIPKN 475
Query: 107 ----DPDAFSGLGILIELDLTKNRIHTLHPD 133
+ + F +L +DL N++ L D
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506
Score = 35.4 bits (82), Expect = 0.004
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCR 139
+ L +L L IT+I + + L N++ + P+
Sbjct: 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI-PNIFDAKS 400
Score = 33.1 bits (76), Expect = 0.028
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L +L ++ + +C P L + +++ NR +
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288
Score = 32.7 bits (75), Expect = 0.041
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 67 QYLDLGKCNVIFCFPADAFRS-----TGLVNLHNLLLKDCNITDIDPD-AFSGLGILIEL 120
++L N++ P ++ + L ++ L+ +T + D + L L+ +
Sbjct: 460 SSINLMG-NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGI 518
Query: 121 DLTKNRIHTLHPDACGL 137
DL+ N
Sbjct: 519 DLSYNSFSKFPTQPLNS 535
Score = 31.2 bits (71), Expect = 0.12
Identities = 10/99 (10%), Positives = 25/99 (25%), Gaps = 4/99 (4%)
Query: 51 NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
T + PR D+ + + + + NIT + A
Sbjct: 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG---QLSNNITFV-SKA 201
Query: 111 FSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES 149
L L + + + + + + ++
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240
Score = 30.0 bits (68), Expect = 0.25
Identities = 15/79 (18%), Positives = 23/79 (29%), Gaps = 8/79 (10%)
Query: 51 NNTGLSAIPRGLSK--DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
N L P G++ + L +G N I N+ L +KD ID
Sbjct: 551 GNRTLREWPEGITLCPSLTQLQIG-SNDIRKVNEKITP-----NISVLDIKDNPNISIDL 604
Query: 109 DAFSGLGILIELDLTKNRI 127
L ++
Sbjct: 605 SYVCPYIEAGMYMLFYDKT 623
Score = 30.0 bits (68), Expect = 0.27
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
+ L L+ + PDA L L L L +
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122
Score = 29.6 bits (67), Expect = 0.37
Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS-----GLGILIELD 121
+DL + D FR+T L L + L + + + G GI + D
Sbjct: 491 TSIDLRFNK-LTKLSDD-FRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRD 548
Query: 122 LTKNRIHTLHPDACGLCRS 140
NR P+ LC S
Sbjct: 549 AQGNRTLREWPEGITLCPS 567
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 41.0 bits (97), Expect = 5e-05
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L L++L L + + + D + GL L L L++N I + P
Sbjct: 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 38.7 bits (91), Expect = 3e-04
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 50 CNNTGLSAIP--RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
N +S I L+K + L+LG + + + + L+ L + + + D+
Sbjct: 117 LNEDNISDISPLANLTK-MYSLNLGANHNLSDLSP----LSNMTGLNYLTVTESKVKDVT 171
Query: 108 PDAFSGLGILIELDLTKNRIHTLHP 132
P + L L L L N+I + P
Sbjct: 172 P--IANLTDLYSLSLNYNQIEDISP 194
Score = 37.5 bits (88), Expect = 7e-04
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L +L++L L I DI P + L L N+I + P
Sbjct: 175 NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216
Score = 36.8 bits (86), Expect = 0.001
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 88 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
L L L + I+DI + L L L L N++ +
Sbjct: 262 KDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEV 306
Score = 35.6 bits (83), Expect = 0.004
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 88 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
+ LV L NL + ITDI L L EL L ++ I + P
Sbjct: 85 SNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP 127
Score = 34.4 bits (80), Expect = 0.007
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGL 137
L NL L L + NI+DI P + L + L+L N + +
Sbjct: 108 NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNM 154
Score = 34.4 bits (80), Expect = 0.007
Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
L L N + + GL NL L L +ITDI P + L + D
Sbjct: 290 NSLFLNN-NQLGNEDMEVI--GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344
Query: 127 I 127
I
Sbjct: 345 I 345
Score = 34.1 bits (79), Expect = 0.010
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
+ L++L + + ITD+ P + L L L++ N+I ++
Sbjct: 219 NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA 260
Score = 33.3 bits (77), Expect = 0.020
Identities = 6/44 (13%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L +L+ ++TD+ L + +L + ++ ++
Sbjct: 20 DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQG 61
Score = 29.4 bits (67), Expect = 0.47
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 5/42 (11%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
G L I I PD + L I L K + +
Sbjct: 1 GAATLA---TLPAPINQIFPD--ADLAEGIRAVLQKASVTDV 37
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 39.6 bits (93), Expect = 1e-04
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 88 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
+GL NL L + ++T SGL L LD++ +
Sbjct: 85 SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124
Score = 38.4 bits (90), Expect = 3e-04
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125
+ L + +V + +GL +L L + D + L + +DL+ N
Sbjct: 91 ERLRIMGKDVTSDKIPNL---SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146
Score = 37.2 bits (87), Expect = 6e-04
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
N+ +L + + + T+ +P SGL L L + + +
Sbjct: 64 YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPN 107
Score = 36.5 bits (85), Expect = 0.001
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 51 NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
+++ L+ I L K V +DL I D L L +L ++ + D
Sbjct: 125 DDSILTKI-NTLPK-VNSIDLSYNGAI----TDIMPLKTLPELKSLNIQFDGVHDYRG-- 176
Query: 111 FSGLGILIELDLTKNRI 127
L +L I
Sbjct: 177 IEDFPKLNQLYAFSQTI 193
Score = 35.3 bits (82), Expect = 0.003
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGLGILIELDLTKN 125
LD+ L ++++ L ITDI P L L L++ +
Sbjct: 115 TLLDISHSA-HDDSILTKI--NTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFD 169
Query: 126 RIHTLHP 132
+H
Sbjct: 170 GVHDYRG 176
Score = 31.9 bits (73), Expect = 0.043
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
+ +L + L + N+TD+ + +L + +P
Sbjct: 43 MNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP 83
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 38.8 bits (91), Expect = 2e-04
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
CN+ GL+++P G+ L+L + N + P F L L L L I +
Sbjct: 14 CNSKGLTSVPTGIPSSATRLEL-ESNKLQSLPHGVFDK--LTQLTKLSLSQNQIQSLPDG 70
Query: 110 AFSGLGILIELDLTKNRIHTL 130
F L L L L +N++ +L
Sbjct: 71 VFDKLTKLTILYLHENKLQSL 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 39.3 bits (92), Expect = 2e-04
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
+ L LG N I + L L L L+D I+DI P +GL L L L+KN
Sbjct: 137 ESLYLGN-NKITDITVLS----RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189
Query: 127 IHTLHP 132
I L
Sbjct: 190 ISDLRA 195
Score = 37.7 bits (88), Expect = 6e-04
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 88 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L L +L L+ I+DI+ L L L L N+I +
Sbjct: 109 KDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITV 151
Score = 37.0 bits (86), Expect = 0.001
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123
+ +L K +V + L ++ ++ + +I + L + +L L
Sbjct: 24 AETIKDNLKKKSVTDAVTQN-----ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76
Query: 124 KNRIHTLHPDA 134
N++ + P A
Sbjct: 77 GNKLTDIKPLA 87
Score = 35.4 bits (82), Expect = 0.004
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L NL L L + + D+ L L L L N I ++
Sbjct: 88 NLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING 129
Score = 33.9 bits (78), Expect = 0.011
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
GL L NL L +I+D+ +GL L L+L
Sbjct: 176 GLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQEC 212
Score = 26.9 bits (60), Expect = 3.0
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 88 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
GL NL L L + + S L + + T + T
Sbjct: 197 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 39.6 bits (92), Expect = 2e-04
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
N LS++P L + L++ + N + P +L L D ++ + P+
Sbjct: 66 LNRLNLSSLPDNLPPQITVLEITQ-NALISLPEL------PASLEYLDACDNRLSTL-PE 117
Query: 110 AFSGLGILIELDLTKNRIHTLHPDACGL 137
+ L LD+ N++ L P+ L
Sbjct: 118 LPAS---LKHLDVDNNQLTML-PELPAL 141
Score = 34.6 bits (79), Expect = 0.008
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLL-LKDCNITDIDP 108
N L+ +P ++ LD+ N++ PA R+ ++ IT I P
Sbjct: 167 VRNNQLTFLPELPES-LEALDVS-TNLLESLPAVPVRNHHSEETEIFFRCRENRITHI-P 223
Query: 109 DAFSGLGILIELDLTKNRIHTLHPDACGLCRSM 141
+ L + L N + + ++ +
Sbjct: 224 ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 38.9 bits (91), Expect = 2e-04
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L NL L LKD ITD+ P L + EL+L+ N + +
Sbjct: 61 YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA 102
Score = 38.9 bits (91), Expect = 3e-04
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 88 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L + L L + ++ +GL + LDLT +I + P
Sbjct: 82 KNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP 124
Score = 38.1 bits (89), Expect = 5e-04
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
+ LDL I A GL NL L L IT+I P +GL L L + +
Sbjct: 110 KTLDLTS-TQITDVTPLA----GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQ 162
Query: 127 IHTLHP 132
+ L P
Sbjct: 163 VSDLTP 168
Score = 37.7 bits (88), Expect = 6e-04
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123
+ + GK NV D L + L +T I+ L LI L+L
Sbjct: 19 ANAIKIAAGKSNVT-----DTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELK 71
Query: 124 KNRIHTLHP 132
N+I L P
Sbjct: 72 DNQITDLAP 80
Score = 35.0 bits (81), Expect = 0.005
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L L L D I+DI P + L LIE+ L N+I + P
Sbjct: 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
Score = 34.3 bits (79), Expect = 0.009
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 88 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
L NL + LK+ I+D+ P + L + LT I
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTI 229
Score = 27.0 bits (60), Expect = 3.0
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 97 LLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
+ + I I PD L I++ K+ +
Sbjct: 3 ITQPTAINVIFPD--PALANAIKIAAGKSNVTDTVT 36
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 38.5 bits (90), Expect = 3e-04
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L NL L +++ + I L L LDL N I
Sbjct: 126 HLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG 167
Score = 36.2 bits (84), Expect = 0.002
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
NL L L I+D+ P L L EL + +NR+ L+
Sbjct: 62 FTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG 102
Score = 34.6 bits (80), Expect = 0.007
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 131
L L L L IT+ + L + +DLT +
Sbjct: 148 FLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEP 188
Score = 34.2 bits (79), Expect = 0.009
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L L L + + D D L L L + N++ ++
Sbjct: 107 CLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIVM 145
Score = 33.8 bits (78), Expect = 0.014
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L L L + + +++ + L L L N +
Sbjct: 83 DLTKLEELSVNRNRLKNLNGIPSAC---LSRLFLDNNELRDTDS 123
Score = 31.9 bits (73), Expect = 0.054
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
GL N L ++TD+ L + + + I +L
Sbjct: 17 GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 38.7 bits (90), Expect = 4e-04
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
+GL+ +P L + L + N + PA L L + +T + P
Sbjct: 47 VGESGLTTLPDCLPAHITTLVIP-DNNLTSLPA------LPPELRTLEVSGNQLTSL-PV 98
Query: 110 AFSGLGILIELDLTKNRIHTL 130
GL L + L
Sbjct: 99 LPPGLLELSIFSNPLTHLPAL 119
Score = 36.0 bits (83), Expect = 0.002
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 12/81 (14%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
L+++P +Q L + N + PA L L + +T + P
Sbjct: 128 IFGNQLTSLPVLPPG-LQELSVS-DNQLASLPA------LPSELCKLWAYNNQLTSL-PM 178
Query: 110 AFSGLGILIELDLTKNRIHTL 130
SGL EL ++ N++ +L
Sbjct: 179 LPSGL---QELSVSDNQLASL 196
Score = 34.1 bits (78), Expect = 0.014
Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 13/91 (14%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
N L+++P S ++ L + N + P L L++ +T +
Sbjct: 208 AYNNRLTSLPALPSG-LKELIVS-GNRLTSLPVL------PSELKELMVSGNRLTSLPM- 258
Query: 110 AFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
L+ L + +N++ L P++ S
Sbjct: 259 ---LPSGLLSLSVYRNQLTRL-PESLIHLSS 285
Score = 33.3 bits (76), Expect = 0.023
Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
+ L+++P S+ ++ L + N + P L +L + +T + P+
Sbjct: 228 VSGNRLTSLPVLPSE-LKELMVSG-NRLTSLPM------LPSGLLSLSVYRNQLTRL-PE 278
Query: 110 AFSGLGILIELDLTKNRIHTL 130
+ L ++L N +
Sbjct: 279 SLIHLSSETTVNLEGNPLSER 299
Score = 32.6 bits (74), Expect = 0.039
Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 55 LSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGL 114
+ + L+ L++G + + P ++ L++ D N+T + P L
Sbjct: 31 VQKMRACLNNGNAVLNVG-ESGLTTLPDCLPA-----HITTLVIPDNNLTSL-PALPPEL 83
Query: 115 GILIELDLTKNRIHTLHPDACGLCRSMLFFY 145
L+++ N++ +L P + F
Sbjct: 84 ---RTLEVSGNQLTSL-PVLPPGLLELSIFS 110
Score = 31.0 bits (70), Expect = 0.14
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 12/88 (13%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
++ L+++P S+ + L N + P L L + D + +
Sbjct: 148 VSDNQLASLPALPSE-LCKLWAY-NNQLTSLPML------PSGLQELSVSDNQLASLPTL 199
Query: 110 AFSGLGILIELDLTKNRIHTLHPDACGL 137
L +L NR+ +L GL
Sbjct: 200 ----PSELYKLWAYNNRLTSLPALPSGL 223
Score = 29.5 bits (66), Expect = 0.44
Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 20/102 (19%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLV--------------NLHN 95
+ L+++P + ++ L++ N + P L L
Sbjct: 68 IPDNNLTSLPALPPE-LRTLEVS-GNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCK 125
Query: 96 LLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGL 137
L + +T + L EL ++ N++ +L L
Sbjct: 126 LWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPALPSEL 163
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 37.7 bits (88), Expect = 7e-04
Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 8/81 (9%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
C L+ I + + LD I T L L IT++D
Sbjct: 134 CARNTLTEIDVSHNTQLTELDCHLNKKI-----TKLDVTPQTQLTTLDCSFNKITELD-- 186
Query: 110 AFSGLGILIELDLTKNRIHTL 130
S +L L+ N I L
Sbjct: 187 -VSQNKLLNRLNCDTNNITKL 206
Score = 35.8 bits (83), Expect = 0.003
Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
C T L I + + Y C I T L+ L + IT++D
Sbjct: 261 CIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDV-----THNTQLYLLDCQAAGITELD-- 313
Query: 110 AFSGLGILIELDLTKNRIHTL 130
S L+ L L + L
Sbjct: 314 -LSQNPKLVYLYLNNTELTEL 333
Score = 34.7 bits (80), Expect = 0.008
Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 8/83 (9%)
Query: 48 AACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
AA I + LD ++ D L L L+ NIT +D
Sbjct: 26 AAFEMQATDTISEEQLATLTSLDCHNSSI-----TDMTGIEKLTGLTKLICTSNNITTLD 80
Query: 108 PDAFSGLGILIELDLTKNRIHTL 130
S L L N++ L
Sbjct: 81 ---LSQNTNLTYLACDSNKLTNL 100
Score = 33.5 bits (77), Expect = 0.020
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 88 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
+ L+ L NIT +D + L LD + N++ +
Sbjct: 188 SQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEI 227
Score = 33.5 bits (77), Expect = 0.021
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
N + + + D + L L LD + I +
Sbjct: 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM 57
Score = 32.7 bits (75), Expect = 0.037
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
C + ++ + + ++ YL + T L L L +T +D
Sbjct: 71 CTSNNITTLDLSQNTNLTYLACDSNKL------TNLDVTPLTKLTYLNCDTNKLTKLD-- 122
Query: 110 AFSGLGILIELDLTKNRIHTL 130
S +L L+ +N + +
Sbjct: 123 -VSQNPLLTYLNCARNTLTEI 142
Score = 32.4 bits (74), Expect = 0.043
Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 8/86 (9%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
C G++ + + + YL L + + L +L + +I D
Sbjct: 304 CQAAGITELDLSQNPKLVYLYLNNTEL------TELDVSHNTKLKSLSCVNAHIQDFSS- 356
Query: 110 AFSGLGILIELDLTKNRIHTLHPDAC 135
+ L + + T+ +
Sbjct: 357 -VGKIPALNNNFEAEGQTITMPKETL 381
Score = 32.4 bits (74), Expect = 0.046
Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 9/81 (11%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
C+ ++ + + + +LD + T L L +T++D
Sbjct: 198 CDTNNITKLDLNQNIQLTFLDCSSNK-LTEIDV-----TPLTQLTYFDCSVNPLTELDVS 251
Query: 110 AFSGLGILIELDLTKNRIHTL 130
S L L + + +
Sbjct: 252 TLSK---LTTLHCIQTDLLEI 269
Score = 31.6 bits (72), Expect = 0.091
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 9/81 (11%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
C++ L+ + + YL+ + + L L +T+ID
Sbjct: 92 CDSNKLTNLDVTPLTKLTYLNCDTNKLT------KLDVSQNPLLTYLNCARNTLTEID-- 143
Query: 110 AFSGLGILIELDLTKNRIHTL 130
S L ELD N+ T
Sbjct: 144 -VSHNTQLTELDCHLNKKITK 163
Score = 28.9 bits (65), Expect = 0.60
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 9/80 (11%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
C++ L+ I + Y D N + + L L L ++ +ID
Sbjct: 219 CSSNKLTEIDVTPLTQLTYFDCS-VNPLTELD-----VSTLSKLTTLHCIQTDLLEID-- 270
Query: 110 AFSGLGILIELDLTKNRIHT 129
+ LI R
Sbjct: 271 -LTHNTQLIYFQAEGCRKIK 289
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 37.3 bits (87), Expect = 0.001
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 88 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L L L + ++DI + L L L T N+I + P
Sbjct: 174 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP 216
Score = 36.9 bits (86), Expect = 0.001
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
GL L NL L + + DI P S L L L L N I + P
Sbjct: 285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326
Score = 36.9 bits (86), Expect = 0.001
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L NL + + +TDI P L L+++ + N+I + P
Sbjct: 66 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 107
Score = 36.9 bits (86), Expect = 0.001
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L NL L L + DI + L L +LDL N+I L P
Sbjct: 219 ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP 260
Score = 35.3 bits (82), Expect = 0.004
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L L L + ++D+ + L + L N+I L P
Sbjct: 329 SLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP 370
Score = 34.6 bits (80), Expect = 0.008
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGL 137
L N++ L I+D+ P + L + +L L +
Sbjct: 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN 397
Score = 32.2 bits (74), Expect = 0.044
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
GL +L L +TD+ P + L L LD++ N++ +
Sbjct: 154 GLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSDISV 194
Score = 31.5 bits (72), Expect = 0.085
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 88 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L NL+ L L I+DI SGL L +L N++ L P
Sbjct: 131 KNLTNLNRLELSSNTISDISA--LSGLTSLQQLSF-GNQVTDLKP 172
Score = 31.5 bits (72), Expect = 0.096
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 95 NLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
+ +D I I D + L ++ L K +
Sbjct: 6 ATITQDTPINQIFTD--TALAEKMKTVLGKTNVTDTVS 41
Score = 29.9 bits (68), Expect = 0.33
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 5/64 (7%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
L L P + + + N +K+ I P S G E D+T N
Sbjct: 378 TQLGLND-QAWTNAPVNYKANVSIPNT----VKNVTGALIAPATISDGGSYTEPDITWNL 432
Query: 127 IHTL 130
Sbjct: 433 PSYT 436
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.001
Identities = 26/130 (20%), Positives = 39/130 (30%), Gaps = 49/130 (37%)
Query: 4 LPGSVRAHVTLLLIALASLIGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIP---- 59
LP + H LL + A + + D + + N + IP
Sbjct: 421 LPVASPFHSHLL-------VPASDLINKDLV----------KNNVSFNAKDI-QIPVYDT 462
Query: 60 ------RGLSKDVQYLDLGKCNVIFCFPAD-----AFRSTGLVNLHNLLLKDCNITDIDP 108
R LS + + + I P F++T H I D P
Sbjct: 463 FDGSDLRVLSGSIS-ERI--VDCIIRLPVKWETTTQFKAT-----H--------ILDFGP 506
Query: 109 DAFSGLGILI 118
SGLG+L
Sbjct: 507 GGASGLGVLT 516
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 36.1 bits (84), Expect = 0.002
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
C N L+++P G+ D Q L L N I F LVNL L +T I
Sbjct: 19 CQNIRLASVPAGIPTDKQRLWLNN-NQITKLEPGVFDH--LVNLQQLYFNSNKLTAIPTG 75
Query: 110 AFSGLGILIELDLTKN 125
F L L +LDL N
Sbjct: 76 VFDKLTQLTQLDLNDN 91
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 35.5 bits (82), Expect = 0.002
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L L L L + I L L L+L+ N++ +
Sbjct: 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110
Score = 31.6 bits (72), Expect = 0.060
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
VNL L L + + + L L +L+L++NRI +
Sbjct: 48 FVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENRIFGGLDMLAEKLPN 96
Score = 25.1 bits (55), Expect = 9.1
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 90 LVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRI 127
L NL +L L + DI + L L LDL +
Sbjct: 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 35.7 bits (83), Expect = 0.002
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
C+ L+++P G+ Q L L N I F L L L L + +T +
Sbjct: 16 CSGKSLASVPTGIPTTTQVLYLYD-NQITKLEPGVFDR--LTQLTRLDLDNNQLTVLPAG 72
Query: 110 AFSGLGILIELDLTKN 125
F L L +L L N
Sbjct: 73 VFDKLTQLTQLSLNDN 88
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 35.4 bits (82), Expect = 0.003
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L L L L D ++ L L+L+ N+I L
Sbjct: 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103
Score = 32.0 bits (73), Expect = 0.040
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
L L + +T I L L +L+L+ NR+ C +
Sbjct: 41 FEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 34.2 bits (79), Expect = 0.006
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L L LL+ + I I L L EL LT N + L
Sbjct: 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103
Score = 30.0 bits (68), Expect = 0.20
Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
L + D I +D F L L L + NRI +
Sbjct: 41 LDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPD 89
Score = 25.8 bits (57), Expect = 5.4
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
V L L+ I I+ + + L +D + N I L
Sbjct: 18 AVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL 57
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 35.1 bits (80), Expect = 0.006
Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 10/107 (9%)
Query: 26 EEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPAD 83
+ K ++ + R + L+ + L V +LDL N + P
Sbjct: 425 LRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLC-HLEQLLLVTHLDLSH-NRLRALPPA 481
Query: 84 AFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L L L D + ++D + L L EL L NR+
Sbjct: 482 ---LAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQS 523
Score = 32.0 bits (72), Expect = 0.056
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 8/80 (10%)
Query: 51 NNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI-D 107
++ L A+P L+ + ++ L N + L L LLL + +
Sbjct: 471 SHNRLRALPPALAALRCLEVLQAS-DNALENVDG----VANLPRLQELLLCNNRLQQSAA 525
Query: 108 PDAFSGLGILIELDLTKNRI 127
L+ L+L N +
Sbjct: 526 IQPLVSCPRLVLLNLQGNSL 545
Score = 32.0 bits (72), Expect = 0.063
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L+ + +L L + + P A + L L L + N + +
Sbjct: 462 LLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVDG 503
Score = 31.7 bits (71), Expect = 0.096
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 96 LLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L L ++T + L ++ LDL+ NR+ L P
Sbjct: 446 LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP 480
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 34.0 bits (79), Expect = 0.009
Identities = 12/86 (13%), Positives = 22/86 (25%), Gaps = 9/86 (10%)
Query: 55 LSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTG-LVNLHNLLLKDCNITDIDPDAF 111
L+ + + + L + A + G L L +T + A
Sbjct: 16 LTRLKAAVGELPEKSKLQEI-YQELTRLKA----AVGELPEKSKLQEIYQELTRL-KAAV 69
Query: 112 SGLGILIELDLTKNRIHTLHPDACGL 137
L +L + L L
Sbjct: 70 GELPEKSKLQEIYQELTRLKAAVGEL 95
Score = 33.6 bits (78), Expect = 0.011
Identities = 7/50 (14%), Positives = 11/50 (22%), Gaps = 1/50 (2%)
Query: 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCR 139
L L +T + A L + + L L
Sbjct: 118 LPEKSKLQEIYQELTQL-KAAVGELPDQSKQQQIYQELTDLKTAFERLGH 166
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 33.7 bits (77), Expect = 0.013
Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 3/94 (3%)
Query: 51 NNTGLSAIPRGLSKDVQYLDLGKC--NVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
T + D+ L+L + A+ + L L + + +
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP-GLKVLSIAQAHSLNFSC 166
Query: 109 DAFSGLGILIELDLTKNRIHTLHPDACGLCRSML 142
+ L LDL+ N LC
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200
Score = 27.9 bits (62), Expect = 1.4
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 11/92 (11%)
Query: 51 NNTGLSAIPRGLS---KDVQYLDL------GKCNVIFCFPADAFRSTGLVNLHNLLLKDC 101
+ LDL G+ +I F + ++ L N ++
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET- 215
Query: 102 NITDIDPDAFSGLGILIELDLTKNRIHTLHPD 133
+ + + L LDL+ N +
Sbjct: 216 -PSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246
Score = 27.9 bits (62), Expect = 1.4
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
Q LDL ++ A + L++L L + + + L LDL+ NR
Sbjct: 231 QGLDLSHNSLRDAAGAPSC--DWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNR 285
Query: 127 IHTL 130
+
Sbjct: 286 LDRN 289
Score = 26.8 bits (59), Expect = 2.8
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Query: 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI--LIELDL 122
++ L + + A R G+ L L L++ +T P L L+L
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128
Query: 123 TKNRIHTLHP 132
T
Sbjct: 129 RNVSWATRDA 138
Score = 26.0 bits (57), Expect = 4.9
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 52 NTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITD 105
TGL +P+GL + LDL N + P L + NL LK D
Sbjct: 262 FTGLKQVPKGLPAKLSVLDLS-YNRLDRNP----SPDELPQVGNLSLKGNPFLD 310
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 32.3 bits (74), Expect = 0.043
Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGL 137
++L +++ + + ++ L L + N + TL L
Sbjct: 213 LPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLPDLPPSL 259
Score = 30.7 bits (70), Expect = 0.16
Identities = 9/88 (10%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
++ + ++ ++ L++ N + PA L L+ ++ ++
Sbjct: 304 ASSNEIRSLCDLPPS-LEELNVSN-NKLIELPAL------PPRLERLIASFNHLAEVPE- 354
Query: 110 AFSGLGILIELDLTKNRIHTLHPDACGL 137
L +L + N + +
Sbjct: 355 ---LPQNLKQLHVEYNPLREFPDIPESV 379
Score = 30.0 bits (68), Expect = 0.26
Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 8/74 (10%)
Query: 55 LSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGL 114
L+ +P ++ L + N + FP ++ +L + + D A
Sbjct: 388 LAEVPELPQN-LKQLHVE-TNPLREFPD------IPESVEDLRMNSERVVDPYEFAHETT 439
Query: 115 GILIELDLTKNRIH 128
L + + H
Sbjct: 440 DKLEDDVFEHHHHH 453
Score = 28.8 bits (65), Expect = 0.68
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 10/88 (11%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
+N L +P ++ + G N++ P L L + + + +
Sbjct: 202 ADNNSLKKLPDLPLS-LESIVAGN-NILEELPE----LQNLPFLTTIYADNNLLKTLPD- 254
Query: 110 AFSGLGILIELDLTKNRIHTLHPDACGL 137
L L++ N + L L
Sbjct: 255 ---LPPSLEALNVRDNYLTDLPELPQSL 279
Score = 28.4 bits (64), Expect = 0.97
Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 25/96 (26%)
Query: 52 NTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111
+S + L + L+L + P +L +L+ ++T++ P+
Sbjct: 59 EMAVSRLRDCLDRQAHELELNNLG-LSSLPEL------PPHLESLVASCNSLTEL-PELP 110
Query: 112 SGL-----------------GILIELDLTKNRIHTL 130
L +L L ++ N++ L
Sbjct: 111 QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL 146
Score = 28.0 bits (63), Expect = 1.5
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 13/82 (15%)
Query: 51 NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
N LS +P L +YL + N + P L + + + ++ +
Sbjct: 122 NLKALSDLPPLL----EYLGVS-NNQLEKLPELQ----NSSFLKIIDVDNNSLKKL---- 168
Query: 111 FSGLGILIELDLTKNRIHTLHP 132
L + N++ L
Sbjct: 169 PDLPPSLEFIAAGNNQLEELPE 190
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 30.8 bits (70), Expect = 0.13
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 50 CNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
L ++P G+ +++ L L + N + P F L NL L L + +
Sbjct: 92 LTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDK--LTNLTYLNLAHNQLQSL 148
Query: 107 DPDAFSGLGILIELDLTKNRIHTL 130
F L L ELDL+ N++ +L
Sbjct: 149 PKGVFDKLTNLTELDLSYNQLQSL 172
Score = 30.8 bits (70), Expect = 0.14
Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 7/81 (8%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
+ P + +L K + L ++ ++ + +I +
Sbjct: 5 VSTPIKQIFPDDAFAETIKANL-KKKSVTDAVTQ----NELNSIDQIIANNSDIKSVQG- 58
Query: 110 AFSGLGILIELDLTKNRIHTL 130
L + L L N++H +
Sbjct: 59 -IQYLPNVRYLALGGNKLHDI 78
Score = 28.8 bits (65), Expect = 0.63
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 50 CNNTGLSAIPRGLS-KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
NN+ + ++ +V+YL LG N + A + L NL L+L + +
Sbjct: 48 ANNSDIKSVQGIQYLPNVRYLALGG-NKLHDISA--LKE--LTNLTYLILTGNQLQSLPN 102
Query: 109 DAFSGLGILIELDLTKNRIHTLHP 132
F L L EL L +N++ +L
Sbjct: 103 GVFDKLTNLKELVLVENQLQSLPD 126
Score = 28.4 bits (64), Expect = 0.93
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124
++ YL L N + P F L NL L+L + + + F L L L+L
Sbjct: 86 NLTYLIL-TGNQLQSLPNGVFD--KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142
Query: 125 NRIHTLHP 132
N++ +L
Sbjct: 143 NQLQSLPK 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 30.7 bits (68), Expect = 0.15
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 8/84 (9%)
Query: 52 NTGLSAIPRGLSKD----VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
+ ++ SKD +++L + S L L + + +TD
Sbjct: 236 DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295
Query: 108 ----PDAFSGLGILIELDLTKNRI 127
D + L +++ N +
Sbjct: 296 ARLLLDHVDKIKHLKFINMKYNYL 319
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 30.7 bits (70), Expect = 0.19
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 62 LSKDVQYLDLGKCNVIFCFPADAFRS--TGLVNLHNLLLKDCNITDID----PDAFSGLG 115
+S D+Q LD+ + L + L DC +T+ A
Sbjct: 1 MSLDIQSLDIQCEE----LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP 56
Query: 116 ILIELDLTKNRI 127
L EL+L N +
Sbjct: 57 ALAELNLRSNEL 68
Score = 25.7 bits (57), Expect = 7.9
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 92 NLHNLLLKDCNITDID----PDAFSGLGILIELDLTKNRI 127
+ L L++C +T L L EL L+ N +
Sbjct: 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 29.7 bits (67), Expect = 0.27
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L L + I + L L L ++ N+I
Sbjct: 94 TLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNW 130
Score = 28.9 bits (65), Expect = 0.48
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
L +L L NI I SG+ L L L +N I +
Sbjct: 47 LKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKI 85
Score = 28.5 bits (64), Expect = 0.65
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
G+ NL L L I I+ + + L EL ++ N+I +L
Sbjct: 68 GMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASL 108
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 27.8 bits (62), Expect = 0.87
Identities = 19/95 (20%), Positives = 24/95 (25%), Gaps = 33/95 (34%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGL--SAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGL 90
C C C T C GL +++P D L L
Sbjct: 2 CPAPCSCAGTL----VDCGRRGLTWASLPTAFPVDTTELVLT------------------ 39
Query: 91 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125
N N+T + P L L L N
Sbjct: 40 ---GN------NLTALPPGLLDALPALRTAHLGAN 65
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 28.0 bits (62), Expect = 1.0
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 92 NLHNLLLKDCNITDIDPDAFSGLG----ILIELDLTKNRIHTL 130
L +L L + + +D S + L L+L+ N + +
Sbjct: 171 ELLSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSGNELKSE 211
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 27.6 bits (61), Expect = 1.7
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 52 NTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111
+ L + + + D++ L L KC+ + T + LL+++ + ++ D
Sbjct: 126 DLDLDRLAKARADDLETLKLDKCSGFTTDGLLSI-VTHCRKIKTLLMEESSFSEKDGKWL 184
Query: 112 SGLG 115
L
Sbjct: 185 HELA 188
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 27.5 bits (60), Expect = 1.9
Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 5/106 (4%)
Query: 28 WMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRS 87
G C HLC G + L+A R S +L + + I D +S
Sbjct: 270 SSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQS 329
Query: 88 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPD 133
++ + L N+ ID D L +D +N I D
Sbjct: 330 PDIILPIHSL---RNVRAIDYDPLDKQ--LYWIDSRQNMIRKAQED 370
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 27.6 bits (62), Expect = 1.9
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 4/63 (6%)
Query: 67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITD-IDPDAFSGLGILIELDLTKN 125
LDL + P L +L L N + + D + L LDL+ N
Sbjct: 297 TGLDLSGNHFYGAVPPFFGS---CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 126 RIH 128
Sbjct: 354 EFS 356
Score = 27.2 bits (61), Expect = 2.6
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 58 IPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGIL 117
+ ++++LD+ N P L +L + ++ A S L
Sbjct: 194 VDVSRCVNLEFLDVSSNNFSTGIPF----LGDCSALQHLDISGNKLSGDFSRAISTCTEL 249
Query: 118 IELDLTKNRI 127
L+++ N+
Sbjct: 250 KLLNISSNQF 259
Score = 26.0 bits (58), Expect = 7.0
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 58 IPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG 115
IP GLS ++ ++ L + P R L NL L L + + + P
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGR---LENLAILKLSNNSFSGNIPAELGDCR 538
Query: 116 ILIELDLTKNRIH-TLHPDACGLCRSML 142
LI LDL N + T+ P A +
Sbjct: 539 SLIWLDLNTNLFNGTI-PAAMFKQSGKI 565
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 27.1 bits (61), Expect = 2.4
Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 27/113 (23%)
Query: 35 HLCKCKWTNGRKGAACNN-----------------TGLSAIPRGLS--KDVQYLDLGKCN 75
C W G C+ IP L+ + +L +G N
Sbjct: 32 DCCNRTWL----GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87
Query: 76 VIF-CFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
+ P + L LH L + N++ PD S + L+ LD + N +
Sbjct: 88 NLVGPIPPAIAK---LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 2.4
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 31/106 (29%)
Query: 44 GRKGA--------ACNNTGL-SAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLH 94
G G+ C + + + + +L+L CN P L L
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFK----IFWLNLKNCNS----PETV-----LEMLQ 203
Query: 95 NLLLK-DCNITDIDPDAFSGLGILIELDLTKNRIHTL-----HPDA 134
LL + D N T D S I + + + + L + +
Sbjct: 204 KLLYQIDPNWTS-RSDHSS--NIKLRIHSIQAELRRLLKSKPYENC 246
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 26.8 bits (59), Expect = 3.0
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 66 VQYLDLGKCNVIFCFPADAFRS--TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123
VQ++DL + + L NL L+ ++D + + L+ L+L+
Sbjct: 95 VQHMDLSNSVIE----VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 26.4 bits (58), Expect = 4.1
Identities = 8/58 (13%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 50 CNNT--GLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITD 105
++ G+ + G ++ L++ C A ++ L + +L + C+++
Sbjct: 466 AGDSDLGMHHVLSGCDS-LRKLEIRDCPFGD--KALLANASKLETMRSLWMSSCSVSF 520
>1wlo_A SUFE protein; structural genomics, riken structural
genomics/proteomics in RSGI, unknown function; NMR
{Thermus thermophilus}
Length = 136
Score = 25.6 bits (56), Expect = 5.2
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 66 VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCN---ITDIDPDAFSGLGILIELDL 122
++ GK + F P +A L L+ + + ++ P + G G +E
Sbjct: 54 HADVEGGKVRLYFHVPDEAPTVKAFAGLLREGLEGESPEAVLEVPPGFYRGYG--LEEFF 111
Query: 123 TKNRIHTLH 131
T R+ L
Sbjct: 112 TPLRLRGLE 120
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain,
heterodimer, internal cavity, activator, angiogenesis,
congenital erythrocytosis; 1.17A {Homo sapiens} PDB:
3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 2b02_A*
2k7s_A 2a24_B
Length = 121
Score = 24.9 bits (55), Expect = 7.8
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 86 RSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT-KNRIHTLHPD 133
+ T ++ HN+ + T +D + +G + +L KN + HP+
Sbjct: 10 QPTRFISRHNI---EGIFTFVDHRCVATVGYQPQ-ELLGKNIVEFCHPE 54
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 25.4 bits (56), Expect = 8.8
Identities = 10/93 (10%), Positives = 24/93 (25%), Gaps = 25/93 (26%)
Query: 54 GLSAIPRGLSK--DVQYLDLGKCN-------VIFCFPADAFRSTGLVNLHNLLLKDCNIT 104
++ L + V+ + L + ++ S +L D
Sbjct: 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWL----SENIAS--KKDLEIAEFSDIFTG 73
Query: 105 DIDPDAFSGLGI----------LIELDLTKNRI 127
+ + L + L + L+ N
Sbjct: 74 RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.142 0.460
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,382,646
Number of extensions: 133021
Number of successful extensions: 1252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 801
Number of HSP's successfully gapped: 443
Length of query: 152
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,328,508
Effective search space: 290010036
Effective search space used: 290010036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.0 bits)