RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17693
(152 letters)
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 60.8 bits (146), Expect = 2e-12
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
C C+C C++ GL +P+ L D LDL N I F+ L N
Sbjct: 4 CPFRCQCHLR----VVQCSDLGLEKVPKDLPPDTALLDLQN-NKITEIKDGDFK--NLKN 56
Query: 93 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFY 145
LH L+L + I+ I P AF+ L L L L+KN++ L + +
Sbjct: 57 LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE 109
Score = 27.3 bits (59), Expect = 0.78
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 8/54 (14%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGI------LIELDLTKNRIHT--LHPDA 134
+ + L + NI+ I + F G + L N + + P
Sbjct: 240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 293
Score = 26.9 bits (58), Expect = 1.2
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFR 147
G+ L + + D NIT I L EL L N+I + + ++
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPPSL---TELHLDGNKITKVDAASLKGLNNLAKLGLS 203
Score = 26.5 bits (57), Expect = 1.3
Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 7/113 (6%)
Query: 16 LIALASLIGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCN 75
L LA L + ++ N K +Q + L N
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN-N 252
Query: 76 VIFCFPADAFRSTG----LVNLHNLLLKDCNIT--DIDPDAFSGLGILIELDL 122
I ++ F G + + L + +I P F + + + L
Sbjct: 253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 43.6 bits (101), Expect = 1e-06
Identities = 28/137 (20%), Positives = 42/137 (30%), Gaps = 26/137 (18%)
Query: 32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLG------------------- 72
DC +C C+ T C GL IPR + L L
Sbjct: 1 DCPAMCHCEGT----TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHL 56
Query: 73 ---KCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 129
+ + G ++ L L + I +I F GL L L+L N+I
Sbjct: 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116
Query: 130 LHPDACGLCRSMLFFYF 146
+ P + S+
Sbjct: 117 VMPGSFEHLNSLTSLNL 133
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 43.6 bits (101), Expect = 2e-06
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 36 LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHN 95
+C+ C+ L+A+P L KD L L + N+++ F L
Sbjct: 3 ICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSE-NLLYTFSLATLM--PYTRLTQ 59
Query: 96 LLLKDCN 102
L L
Sbjct: 60 LNLDRAE 66
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 38.6 bits (88), Expect = 1e-04
Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 25/137 (18%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
C C C + + +C GL A+P G+ Q + L N I PA +FR+ +
Sbjct: 2 CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHG-NRISHVPAASFRACRNLT 59
Query: 93 LHNLLLKDC-----------------------NITDIDPDAFSGLGILIELDLTKNRIHT 129
+ L + +DP F GLG L L L + +
Sbjct: 60 ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 119
Query: 130 LHPDACGLCRSMLFFYF 146
L P ++ + Y
Sbjct: 120 LGPGLFRGLAALQYLYL 136
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 34.9 bits (78), Expect = 0.002
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Query: 33 CEH-LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRS 87
C H +C C C + ++ IP L ++ L + AF
Sbjct: 1 CHHRICHCSNR----VFLCQESKVTEIPSDLPRNAIELRFVLTK-LRVIQKGAFSG 51
Score = 30.3 bits (66), Expect = 0.072
Identities = 9/53 (16%), Positives = 13/53 (24%), Gaps = 2/53 (3%)
Query: 74 CNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
N + P D F G L + I + L L +
Sbjct: 186 NNNLEELPNDVFH--GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 28.7 bits (62), Expect = 0.22
Identities = 11/50 (22%), Positives = 22/50 (44%)
Query: 92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSM 141
L + N+ ++ D F G + LD+++ RIH+L + +
Sbjct: 178 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 227
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 34.0 bits (77), Expect = 0.003
Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 2/93 (2%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
L I + + + L+L ++ + NL L L +
Sbjct: 52 SMAATLRIIEENIPE-LLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSEREL 109
Query: 110 AFSGLGILIELDLTKNRIHTLHPDACGLCRSML 142
L EL L N + D ++
Sbjct: 110 DKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR 142
Score = 26.7 bits (58), Expect = 0.81
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 90 LVNLHNLLLKDCNITDID--PDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFR 147
+ L +L L + + +D L L+L+ N + + + +
Sbjct: 64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 123
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 32.7 bits (73), Expect = 0.012
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 7/94 (7%)
Query: 39 CKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLL 98
T N P K++ YL L N+ P + L L L
Sbjct: 282 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV-----SSLTKLQRLFF 336
Query: 99 KDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
+ ++D + + L + L N+I L P
Sbjct: 337 ANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368
Score = 28.8 bits (63), Expect = 0.29
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 69 LDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 128
LGK NV D T L + L I ID L L +++ + N++
Sbjct: 27 TVLGKTNV-----TDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLT 79
Query: 129 TLHP 132
+ P
Sbjct: 80 DITP 83
Score = 25.7 bits (55), Expect = 2.5
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
NL L L + DI + L L +LDL N+I L P
Sbjct: 220 NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP 258
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 31.1 bits (69), Expect = 0.035
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 3/64 (4%)
Query: 88 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDAC--GLCRSMLFFY 145
T V L L+ I I + + L +D + N I L L ++
Sbjct: 15 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 73
Query: 146 FRES 149
Sbjct: 74 RICR 77
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 30.7 bits (67), Expect = 0.068
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 63 SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID----PDAFSGLGILI 118
S D+Q LD+ + A+ L + L DC +T+ A L
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPL--LQQCQVVRLDDCGLTEARCKDISSALRVNPALA 58
Query: 119 ELDLTKNRI 127
EL+L N +
Sbjct: 59 ELNLRSNEL 67
Score = 26.9 bits (57), Expect = 1.2
Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 5/104 (4%)
Query: 28 WMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRS 87
+ C+ + A C++ ++Q + +
Sbjct: 307 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 366
Query: 88 TGLVNLHNLLLKDCNITDID----PDAFSGLGILIELDLTKNRI 127
L L L DC+++D L ELDL+ N +
Sbjct: 367 -PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 29.8 bits (65), Expect = 0.13
Identities = 10/110 (9%), Positives = 28/110 (25%), Gaps = 11/110 (10%)
Query: 21 SLIGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCF 80
L + ++ ++ L ++ L++ +
Sbjct: 241 ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIEL 299
Query: 81 PADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
PA L L+ ++ ++ L +L + N +
Sbjct: 300 PA------LPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLREF 339
Score = 27.1 bits (58), Expect = 1.0
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFF 144
H L L + ++ + P+ L L + N + L L ++
Sbjct: 39 QAHELELNNLGLSSL-PEL---PPHLESLVASCNSLTELPELPQSLKSLLVDN 87
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 28.5 bits (63), Expect = 0.20
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 96 LLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYF 146
L L ++T + L ++ LDL+ NR+ L P L +
Sbjct: 3 LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQAS 51
Score = 23.9 bits (51), Expect = 6.8
Identities = 10/61 (16%), Positives = 16/61 (26%), Gaps = 1/61 (1%)
Query: 71 LGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI-DPDAFSGLGILIELDLTKNRIHT 129
L + L L LLL + + L+ L+L N +
Sbjct: 45 LEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
Query: 130 L 130
Sbjct: 105 E 105
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 28.8 bits (63), Expect = 0.24
Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 8/78 (10%)
Query: 69 LDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 128
+ GK NV D L + L +T I+ L LI L+L N+I
Sbjct: 24 IAAGKSNV-----TDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQIT 76
Query: 129 TLHPDACGLCRSMLFFYF 146
L +
Sbjct: 77 D-LAPLKNLTKITELELS 93
Score = 28.5 bits (62), Expect = 0.25
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
L L D I+DI P + L LIE+ L N+I + P
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
Score = 27.7 bits (60), Expect = 0.48
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123
L NL + LK+ I+D+ P + L + LT
Sbjct: 193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 28.2 bits (61), Expect = 0.25
Identities = 23/116 (19%), Positives = 37/116 (31%), Gaps = 7/116 (6%)
Query: 33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGL--SKDVQYLDLGKCNVIFCFPADAFRSTGL 90
C C +G G C G L ++++ L + + R GL
Sbjct: 1 CPDACCP---HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLR--GL 55
Query: 91 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYF 146
L NL + + + PDAF L L+L+ N + +L
Sbjct: 56 GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLS 111
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 27.0 bits (58), Expect = 1.0
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGL 137
NL+ L L++ I P + L L L+++ N + P L
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 25.8 bits (55), Expect = 2.4
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYF 146
L +L L NI I SG+ L L L +N I + +
Sbjct: 46 TLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 25.5 bits (54), Expect = 2.8
Identities = 12/93 (12%), Positives = 22/93 (23%), Gaps = 5/93 (5%)
Query: 50 CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID-P 108
N R LS+ V + + ++ L + I
Sbjct: 9 GKNLHPDVTGRLLSQGVIAFRCPRS----FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 64
Query: 109 DAFSGLGILIELDLTKNRIHTLHPDACGLCRSM 141
S L L L R+ + ++
Sbjct: 65 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 97
>d1t3ta6 d.139.1.1 (A:430-616) FGAM synthase PurL, PurM-like module,
C1 and C2 domains {Salmonella typhimurium [TaxId:
90371]}
Length = 187
Score = 24.9 bits (54), Expect = 3.9
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 110 AFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
+ G G EL + + P S
Sbjct: 88 SDGGRGGKFELRDILSDEPGMSPLEIWCNES 118
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 24.5 bits (51), Expect = 7.0
Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 5/56 (8%)
Query: 77 IFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA-----FSGLGILIELDLTKNRI 127
DAF + L L L+ I + L+ L+L NR
Sbjct: 259 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 24.2 bits (51), Expect = 8.1
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 74 CNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
+ D + L L L L+D I+DI P +GL L L L+KN I L
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA 195
>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 260
Score = 24.0 bits (51), Expect = 8.9
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 83 DAFRSTGLVNLHNLLLKDCNIT--DIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
D F G ++L + + + DP F L I L+ ++R+ + D
Sbjct: 113 DMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE 172
Query: 141 MLF 143
+
Sbjct: 173 NIA 175
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 23.9 bits (50), Expect = 9.1
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123
+ LGK NV D T L + L I ID L L +++ +
Sbjct: 18 AEKMKTVLGKTNV-----TDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFS 70
Query: 124 KNRIH 128
N++
Sbjct: 71 NNQLT 75
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.142 0.460
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 585,414
Number of extensions: 25362
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 45
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.4 bits)