BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17695
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 265 bits (676), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 134/218 (61%), Positives = 155/218 (71%), Gaps = 21/218 (9%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
GNIPEAI SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY+ RMKKLVSIVA+QL+KNRL
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 184
Query: 82 PSVHPHHSMLYPLTHEYRKAIAARHANLCL------------------LKAMRAKVWQAR 123
PSVHPHHSMLYPL+H +RKAIA RH NLCL L R +V
Sbjct: 185 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVS 244
Query: 124 TESPLFCVQRYAQRLESLYK-VMWDRYSQNLPVTHIT--QAKIAREAEHFLDLSQVPCNG 180
++ Q + ++ ++ + L T + K+ EA HF+DLSQ+PCNG
Sbjct: 245 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 304
Query: 181 KAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQS 218
KAADRIH+DGIHILVNMNGYTKGARNE+FALRPAPIQ+
Sbjct: 305 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQA 342
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 96 HEYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQRYAQRLESLYKVMWDRYS 150
EY +L LK +R KVW+ R SPLF ++Y LE LY MW+ Y+
Sbjct: 656 QEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHYA 710
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
GNI EA++ YR AL++ P+F A+ NLA LQ
Sbjct: 23 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 54
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD 57
G + EA+ Y+ A+++ P F DAY N+ + L+ + D
Sbjct: 57 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 92
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 11/110 (10%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ---IVCDWTDYEARMKKLVSIVAEQLDK 78
G I AI +YR A++L+P FPDAYCNLA+ L+ V + D +L A+ L
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL-- 308
Query: 79 NRLPSVHPHHSMLYPLTHEYRKAI------AARHANLCLLKAMRAKVWQA 122
N L ++ + YRKA+ AA H+NL + + K+ +A
Sbjct: 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 18 FPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLD 77
+ G + EAI+ YR AL+LKPDF D Y NLA L D M+ V L
Sbjct: 77 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD-------MEGAVQAYVSALQ 129
Query: 78 KNRLPSVHPHHSMLYPLTHEYRKAIA-ARHANLCLLKAMRAKVWQARTESPLFCV 131
N P ++ S L L KA+ A C LKA+ + A S L CV
Sbjct: 130 YN--PDLYCVRSDLGNLL----KALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 16 SSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD 57
S G + EA+ Y+ A+++ P F DAY N+ + L+ + D
Sbjct: 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
P F V F + G I AI + A+ L P+F DAY NL + L+
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214
>pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2VSY|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2JLB|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2JLB|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2XGM|A Chain A, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGM|B Chain B, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGO|A Chain A, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGO|B Chain B, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGS|A Chain A, Xcogt In Complex With C-Udp
pdb|2XGS|B Chain B, Xcogt In Complex With C-Udp
Length = 568
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 183 ADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQSSFTA 222
A I GI +L ++ G+ G R E+FALRPAP+Q ++ A
Sbjct: 275 AKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLA 314
>pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
pdb|2VSN|B Chain B, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
Length = 568
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 183 ADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQSSFTA 222
A I GI +L ++ G+ G R E+FALRPAP+Q ++ A
Sbjct: 275 AKHIRHHGIDLLFDLAGWGGGGRPEVFALRPAPVQVNWLA 314
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 18 FPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLD 77
F + N EAI+ Y+ A++L P+ P Y N++ C D ++K++ + L+
Sbjct: 31 FFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGD-------LEKVIEFTTKALE 83
Query: 78 KNRLPSVHPHHS 89
+ P HS
Sbjct: 84 ------IKPDHS 89
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82
C-Terminal Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1
C-Terminal Fragment
Length = 537
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 18 FPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLD 77
F + N EAI+ Y+ A++L P+ P Y N++ C D ++K++ + L+
Sbjct: 35 FFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGD-------LEKVIEFTTKALE 87
Query: 78 KNRLPSVHPHHS 89
+ P HS
Sbjct: 88 ------IKPDHS 93
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 81 LPSVHPHHSM----LYPLTHEYRKAIAARHANLCLLKAMR 116
+P++HPH + L TH +R+A A+ H + L+K +
Sbjct: 324 VPTIHPHIKIGSRNLVGHTHRFREAAASVHGDEALIKGAK 363
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,683,639
Number of Sequences: 62578
Number of extensions: 251934
Number of successful extensions: 749
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 728
Number of HSP's gapped (non-prelim): 20
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)