Query psy17695
Match_columns 222
No_of_seqs 204 out of 1678
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 20:37:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gyw_A UDP-N-acetylglucosamine 100.0 1.4E-47 4.8E-52 356.1 20.4 211 2-222 105-346 (723)
2 2vsy_A XCC0866; transferase, g 99.9 1.9E-23 6.3E-28 188.5 18.2 205 2-222 51-314 (568)
3 3q3e_A HMW1C-like glycosyltran 99.9 3E-23 1E-27 187.3 3.9 87 132-222 270-381 (631)
4 3gyz_A Chaperone protein IPGC; 99.4 1.7E-13 5.7E-18 103.6 6.4 73 2-74 30-102 (151)
5 3ma5_A Tetratricopeptide repea 99.4 7.6E-13 2.6E-17 92.3 9.3 73 2-74 1-73 (100)
6 3gyz_A Chaperone protein IPGC; 99.4 2.4E-13 8.1E-18 102.7 6.1 73 2-74 64-136 (151)
7 4gco_A Protein STI-1; structur 99.4 7.6E-13 2.6E-17 96.4 7.6 73 3-75 8-80 (126)
8 4gco_A Protein STI-1; structur 99.4 1.6E-12 5.3E-17 94.8 7.3 74 2-75 41-114 (126)
9 1hxi_A PEX5, peroxisome target 99.3 2.2E-12 7.6E-17 93.2 5.6 73 2-74 45-117 (121)
10 2vgx_A Chaperone SYCD; alterna 99.3 5.1E-12 1.7E-16 94.5 7.6 72 3-74 50-121 (148)
11 1zu2_A Mitochondrial import re 99.3 1.2E-12 4.2E-17 99.2 3.5 73 2-74 30-123 (158)
12 2xcb_A PCRH, regulatory protei 99.3 8.8E-12 3E-16 92.0 8.0 72 3-74 47-118 (142)
13 4gcn_A Protein STI-1; structur 99.3 9.6E-12 3.3E-16 90.5 7.8 70 6-75 6-75 (127)
14 2hr2_A Hypothetical protein; a 99.3 6.8E-12 2.3E-16 95.3 7.0 68 8-75 57-135 (159)
15 2kat_A Uncharacterized protein 99.3 2.6E-11 9E-16 85.9 9.7 73 2-74 13-85 (115)
16 3upv_A Heat shock protein STI1 99.2 2E-11 6.9E-16 87.7 8.2 73 2-74 32-104 (126)
17 4ga2_A E3 SUMO-protein ligase 99.2 7E-12 2.4E-16 93.8 5.7 74 2-75 25-98 (150)
18 2vgx_A Chaperone SYCD; alterna 99.2 1.3E-11 4.4E-16 92.3 6.4 74 1-74 14-87 (148)
19 4ga2_A E3 SUMO-protein ligase 99.2 1.2E-11 3.9E-16 92.6 6.0 73 2-74 59-132 (150)
20 3k9i_A BH0479 protein; putativ 99.2 1.6E-11 5.6E-16 87.5 6.1 71 4-74 23-93 (117)
21 3sz7_A HSC70 cochaperone (SGT) 99.2 3.6E-11 1.2E-15 90.6 7.9 72 3-74 40-111 (164)
22 2xcb_A PCRH, regulatory protei 99.2 4.1E-11 1.4E-15 88.4 6.8 74 1-74 11-84 (142)
23 3vtx_A MAMA; tetratricopeptide 99.2 1.2E-10 3.9E-15 88.8 9.3 73 3-75 102-174 (184)
24 3q49_B STIP1 homology and U bo 99.2 1.2E-10 4.1E-15 84.2 8.5 72 3-74 38-109 (137)
25 4gyw_A UDP-N-acetylglucosamine 99.1 3.2E-11 1.1E-15 112.1 6.0 71 4-74 39-109 (723)
26 4gcn_A Protein STI-1; structur 99.1 6.3E-11 2.1E-15 86.1 5.2 72 2-73 36-114 (127)
27 2pl2_A Hypothetical conserved 99.1 1.4E-10 4.7E-15 91.7 7.2 73 2-74 33-116 (217)
28 3urz_A Uncharacterized protein 99.1 7E-11 2.4E-15 92.8 5.4 73 2-74 32-120 (208)
29 3upv_A Heat shock protein STI1 99.1 2.4E-10 8.2E-15 82.0 7.7 70 5-74 1-70 (126)
30 2l6j_A TPR repeat-containing p 99.1 2.1E-10 7.2E-15 79.7 7.0 68 7-74 3-70 (111)
31 3rkv_A Putative peptidylprolyl 99.1 1.7E-10 5.7E-15 86.6 6.6 71 4-74 59-129 (162)
32 1na3_A Designed protein CTPR2; 99.1 4.7E-10 1.6E-14 75.2 7.7 70 5-74 6-75 (91)
33 2lni_A Stress-induced-phosphop 99.1 8.6E-10 2.9E-14 78.6 9.5 72 3-74 45-116 (133)
34 3vtx_A MAMA; tetratricopeptide 99.0 5.7E-10 1.9E-14 84.9 7.8 69 6-74 3-71 (184)
35 2kck_A TPR repeat; tetratricop 99.0 3.9E-10 1.3E-14 77.8 6.1 72 3-74 1-72 (112)
36 3q49_B STIP1 homology and U bo 99.0 1.8E-09 6.1E-14 77.9 9.2 72 3-74 4-75 (137)
37 2h6f_A Protein farnesyltransfe 99.0 2.1E-10 7.3E-15 99.0 4.8 73 2-74 125-198 (382)
38 1hxi_A PEX5, peroxisome target 99.0 1.2E-09 4E-14 78.7 7.7 66 9-74 18-83 (121)
39 2pl2_A Hypothetical conserved 99.0 9.2E-10 3.1E-14 86.9 7.8 70 5-74 2-71 (217)
40 3sz7_A HSC70 cochaperone (SGT) 99.0 1.3E-09 4.4E-14 81.9 8.2 72 3-74 6-77 (164)
41 2h6f_A Protein farnesyltransfe 99.0 4.8E-10 1.7E-14 96.7 6.3 71 3-73 92-163 (382)
42 2xev_A YBGF; tetratricopeptide 99.0 2.4E-09 8.2E-14 76.4 8.7 72 3-74 31-108 (129)
43 3bee_A Putative YFRE protein; 99.0 2.1E-09 7.1E-14 74.3 7.9 71 3-73 1-74 (93)
44 2hr2_A Hypothetical protein; a 99.0 1.6E-09 5.5E-14 82.1 7.3 64 8-71 11-86 (159)
45 2kck_A TPR repeat; tetratricop 98.9 7.3E-10 2.5E-14 76.4 5.1 71 3-73 35-108 (112)
46 2c2l_A CHIP, carboxy terminus 98.9 1.6E-09 5.3E-14 89.2 7.7 74 2-75 32-105 (281)
47 2dba_A Smooth muscle cell asso 98.9 2.3E-09 7.9E-14 77.9 7.8 72 3-74 23-97 (148)
48 1a17_A Serine/threonine protei 98.9 2.2E-09 7.6E-14 79.5 7.7 72 3-74 42-113 (166)
49 1elw_A TPR1-domain of HOP; HOP 98.9 3E-09 1E-13 73.8 7.5 66 4-69 34-99 (118)
50 2vyi_A SGTA protein; chaperone 98.9 6.6E-09 2.3E-13 73.3 9.3 70 4-73 42-111 (131)
51 3urz_A Uncharacterized protein 98.9 9.7E-10 3.3E-14 86.2 4.2 56 2-57 82-137 (208)
52 1p5q_A FKBP52, FK506-binding p 98.9 3.1E-09 1.1E-13 89.7 7.4 67 8-74 196-262 (336)
53 2fbn_A 70 kDa peptidylprolyl i 98.9 5.4E-09 1.8E-13 80.9 7.7 66 9-74 89-154 (198)
54 2lni_A Stress-induced-phosphop 98.8 8.7E-09 3E-13 73.2 7.7 72 3-74 11-82 (133)
55 1na0_A Designed protein CTPR3; 98.8 1.9E-08 6.3E-13 70.3 9.3 72 3-74 3-75 (125)
56 3mkr_A Coatomer subunit epsilo 98.8 9.9E-09 3.4E-13 84.9 8.9 72 3-74 195-267 (291)
57 2r5s_A Uncharacterized protein 98.8 4.9E-09 1.7E-13 79.8 6.4 68 3-70 103-172 (176)
58 2kc7_A BFR218_protein; tetratr 98.8 9.3E-09 3.2E-13 70.3 7.1 64 11-74 3-67 (99)
59 4i17_A Hypothetical protein; T 98.8 6.4E-09 2.2E-13 81.8 6.9 69 6-74 40-108 (228)
60 1elr_A TPR2A-domain of HOP; HO 98.8 1.8E-08 6E-13 71.2 8.4 70 5-74 1-70 (131)
61 2e2e_A Formate-dependent nitri 98.8 6.6E-09 2.3E-13 78.6 6.5 72 3-74 39-113 (177)
62 4i17_A Hypothetical protein; T 98.8 4.5E-09 1.5E-13 82.7 5.7 73 2-74 70-149 (228)
63 1wao_1 Serine/threonine protei 98.8 7.3E-09 2.5E-13 91.7 7.5 73 2-74 34-106 (477)
64 4eqf_A PEX5-related protein; a 98.8 1.1E-08 3.7E-13 85.9 7.8 72 3-74 242-313 (365)
65 2dba_A Smooth muscle cell asso 98.8 2.7E-08 9.3E-13 72.1 8.8 73 2-74 56-131 (148)
66 1xnf_A Lipoprotein NLPI; TPR, 98.8 1.1E-08 3.8E-13 81.8 7.2 70 4-73 73-142 (275)
67 2e2e_A Formate-dependent nitri 98.8 9.5E-09 3.3E-13 77.7 6.3 72 3-74 73-147 (177)
68 1hh8_A P67PHOX, NCF-2, neutrop 98.8 8E-09 2.7E-13 80.1 5.6 67 7-73 36-102 (213)
69 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3E-08 1E-12 76.8 8.8 65 7-74 5-69 (213)
70 1na0_A Designed protein CTPR3; 98.8 4.4E-08 1.5E-12 68.4 8.9 72 3-74 38-109 (125)
71 1elr_A TPR2A-domain of HOP; HO 98.8 1.3E-08 4.4E-13 71.9 6.0 71 3-73 33-110 (131)
72 1elw_A TPR1-domain of HOP; HOP 98.8 3.4E-08 1.2E-12 68.3 8.1 69 6-74 2-70 (118)
73 4eqf_A PEX5-related protein; a 98.7 1.9E-08 6.7E-13 84.3 8.0 74 2-75 93-166 (365)
74 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 8.6E-09 2.9E-13 90.7 5.9 67 8-74 317-383 (457)
75 2vyi_A SGTA protein; chaperone 98.7 1.9E-08 6.3E-13 70.9 6.6 72 3-74 7-78 (131)
76 1ihg_A Cyclophilin 40; ppiase 98.7 9.8E-09 3.3E-13 88.1 5.7 72 3-74 268-339 (370)
77 2vsy_A XCC0866; transferase, g 98.7 2.8E-08 9.7E-13 89.1 8.9 73 2-74 17-89 (568)
78 2c2l_A CHIP, carboxy terminus 98.7 2.2E-08 7.5E-13 82.3 7.4 70 5-74 1-70 (281)
79 3uq3_A Heat shock protein STI1 98.7 3.4E-08 1.2E-12 77.9 8.2 69 4-72 169-237 (258)
80 2fo7_A Synthetic consensus TPR 98.7 8.8E-08 3E-12 67.4 9.2 72 3-74 30-101 (136)
81 3as5_A MAMA; tetratricopeptide 98.7 1E-07 3.4E-12 71.1 10.0 70 4-73 72-141 (186)
82 1fch_A Peroxisomal targeting s 98.7 3.8E-08 1.3E-12 82.2 8.3 72 3-74 246-317 (368)
83 3as5_A MAMA; tetratricopeptide 98.7 8.7E-08 3E-12 71.5 9.5 74 1-74 35-108 (186)
84 2if4_A ATFKBP42; FKBP-like, al 98.7 9.9E-09 3.4E-13 86.8 4.6 66 9-74 231-296 (338)
85 3qky_A Outer membrane assembly 98.7 5.7E-08 1.9E-12 78.1 8.8 73 2-74 9-84 (261)
86 2pzi_A Probable serine/threoni 98.7 2.8E-08 9.5E-13 91.6 7.2 74 2-75 427-500 (681)
87 4abn_A Tetratricopeptide repea 98.7 1.3E-08 4.5E-13 89.8 4.9 73 2-74 207-290 (474)
88 3rkv_A Putative peptidylprolyl 98.7 3.4E-08 1.2E-12 73.8 6.5 68 7-74 10-95 (162)
89 3qou_A Protein YBBN; thioredox 98.7 3.3E-08 1.1E-12 81.4 6.6 70 4-73 181-250 (287)
90 1p5q_A FKBP52, FK506-binding p 98.7 2.3E-08 7.9E-13 84.4 5.7 71 4-74 143-228 (336)
91 1w3b_A UDP-N-acetylglucosamine 98.7 4.4E-08 1.5E-12 82.9 7.4 70 4-73 233-302 (388)
92 1w3b_A UDP-N-acetylglucosamine 98.6 4.8E-08 1.6E-12 82.7 7.5 72 3-74 62-133 (388)
93 2pzi_A Probable serine/threoni 98.6 7E-09 2.4E-13 95.6 2.5 73 2-75 461-533 (681)
94 4abn_A Tetratricopeptide repea 98.6 6E-08 2E-12 85.6 8.3 73 2-74 96-169 (474)
95 2xev_A YBGF; tetratricopeptide 98.6 5.2E-08 1.8E-12 69.3 6.4 67 8-74 2-71 (129)
96 1xnf_A Lipoprotein NLPI; TPR, 98.6 5.3E-08 1.8E-12 77.8 7.0 71 4-74 39-109 (275)
97 1a17_A Serine/threonine protei 98.6 1.3E-07 4.4E-12 69.8 8.7 68 7-74 12-79 (166)
98 2q7f_A YRRB protein; TPR, prot 98.6 1.3E-07 4.3E-12 74.2 8.8 73 2-74 51-123 (243)
99 2fo7_A Synthetic consensus TPR 98.6 1.4E-07 4.8E-12 66.4 8.2 66 9-74 2-67 (136)
100 1fch_A Peroxisomal targeting s 98.6 8E-08 2.7E-12 80.1 7.9 73 2-74 92-164 (368)
101 3uq3_A Heat shock protein STI1 98.6 7.5E-08 2.6E-12 75.9 7.3 72 3-74 134-205 (258)
102 3qky_A Outer membrane assembly 98.6 7.8E-08 2.7E-12 77.3 7.4 73 2-74 43-129 (261)
103 2vq2_A PILW, putative fimbrial 98.6 1.1E-07 3.9E-12 73.3 7.9 72 3-74 3-74 (225)
104 2l6j_A TPR repeat-containing p 98.6 1.7E-08 5.9E-13 69.8 2.7 62 2-63 32-99 (111)
105 3cv0_A Peroxisome targeting si 98.6 2.5E-07 8.4E-12 75.5 9.8 71 4-74 202-272 (327)
106 1na3_A Designed protein CTPR2; 98.6 7.4E-08 2.5E-12 64.1 5.5 54 3-56 38-91 (91)
107 3qou_A Protein YBBN; thioredox 98.5 5.8E-08 2E-12 79.9 5.1 69 5-73 114-182 (287)
108 2vq2_A PILW, putative fimbrial 98.5 2.7E-07 9.4E-12 71.1 8.7 71 3-73 108-178 (225)
109 2q7f_A YRRB protein; TPR, prot 98.5 3.9E-07 1.3E-11 71.3 9.2 72 3-74 86-157 (243)
110 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.2E-07 4.1E-12 83.3 6.3 71 4-74 264-349 (457)
111 3ieg_A DNAJ homolog subfamily 98.5 1.1E-07 3.7E-12 78.4 5.3 71 3-73 32-102 (359)
112 2r5s_A Uncharacterized protein 98.5 1.6E-08 5.4E-13 76.9 0.1 69 4-72 2-70 (176)
113 2y4t_A DNAJ homolog subfamily 98.5 2.5E-07 8.5E-12 79.3 7.7 73 2-74 20-92 (450)
114 3hym_B Cell division cycle pro 98.5 3.2E-07 1.1E-11 74.9 8.0 72 3-74 85-157 (330)
115 2ho1_A Type 4 fimbrial biogene 98.5 1.9E-07 6.6E-12 73.8 6.4 70 4-73 32-102 (252)
116 2fbn_A 70 kDa peptidylprolyl i 98.5 4.4E-07 1.5E-11 69.9 8.2 69 6-74 36-120 (198)
117 2ond_A Cleavage stimulation fa 98.5 1.6E-07 5.5E-12 77.7 6.1 71 3-73 94-165 (308)
118 3cv0_A Peroxisome targeting si 98.5 6.4E-07 2.2E-11 73.0 9.2 72 3-74 167-238 (327)
119 3ieg_A DNAJ homolog subfamily 98.5 5.9E-07 2E-11 74.0 8.9 72 3-74 149-220 (359)
120 2ho1_A Type 4 fimbrial biogene 98.5 4E-07 1.4E-11 72.0 7.6 66 4-69 137-202 (252)
121 2kc7_A BFR218_protein; tetratr 98.5 4.6E-08 1.6E-12 66.7 1.8 65 2-74 28-93 (99)
122 3hym_B Cell division cycle pro 98.5 2E-07 6.8E-12 76.2 5.9 71 3-73 120-190 (330)
123 2yhc_A BAMD, UPF0169 lipoprote 98.4 5E-07 1.7E-11 71.3 7.6 68 7-74 3-73 (225)
124 2ond_A Cleavage stimulation fa 98.4 2E-07 7E-12 77.0 5.3 72 3-74 45-131 (308)
125 2y4t_A DNAJ homolog subfamily 98.4 4.7E-07 1.6E-11 77.6 7.7 71 3-73 55-125 (450)
126 2xpi_A Anaphase-promoting comp 98.4 6.7E-07 2.3E-11 79.5 8.7 71 4-74 511-582 (597)
127 3u4t_A TPR repeat-containing p 98.4 4.5E-07 1.5E-11 72.4 6.2 61 9-69 75-135 (272)
128 1wao_1 Serine/threonine protei 98.4 5.1E-08 1.7E-12 86.3 0.3 70 5-74 3-72 (477)
129 3u4t_A TPR repeat-containing p 98.4 3.5E-07 1.2E-11 73.1 5.1 72 2-74 31-106 (272)
130 1zu2_A Mitochondrial import re 98.3 1.8E-07 6E-12 70.8 2.8 49 1-49 73-132 (158)
131 4g1t_A Interferon-induced prot 98.3 1.6E-06 5.3E-11 75.0 9.3 71 5-75 48-127 (472)
132 3edt_B KLC 2, kinesin light ch 98.3 6.1E-07 2.1E-11 71.4 5.9 71 4-74 123-201 (283)
133 3fp2_A TPR repeat-containing p 98.3 1.5E-06 5.1E-11 76.1 8.9 71 4-74 340-410 (537)
134 3fp2_A TPR repeat-containing p 98.3 1.3E-06 4.6E-11 76.4 8.6 71 4-74 306-376 (537)
135 2gw1_A Mitochondrial precursor 98.3 5.6E-07 1.9E-11 78.1 6.0 70 3-73 35-104 (514)
136 3mkr_A Coatomer subunit epsilo 98.3 1.8E-06 6.1E-11 71.2 8.7 71 4-74 160-232 (291)
137 2if4_A ATFKBP42; FKBP-like, al 98.3 5E-07 1.7E-11 76.2 5.2 70 5-74 176-262 (338)
138 1qqe_A Vesicular transport pro 98.3 1.3E-06 4.4E-11 71.8 7.4 67 8-74 77-150 (292)
139 2v5f_A Prolyl 4-hydroxylase su 98.3 2.8E-06 9.4E-11 59.2 8.1 68 7-74 4-78 (104)
140 1ouv_A Conserved hypothetical 98.3 2.6E-06 8.8E-11 68.5 9.0 66 4-71 2-71 (273)
141 2gw1_A Mitochondrial precursor 98.3 1.5E-06 5.2E-11 75.4 8.1 72 3-74 333-404 (514)
142 2yhc_A BAMD, UPF0169 lipoprote 98.3 8.5E-07 2.9E-11 69.9 5.9 63 12-74 151-216 (225)
143 3qww_A SET and MYND domain-con 98.3 9.3E-07 3.2E-11 77.4 6.0 71 5-75 337-415 (433)
144 3k9i_A BH0479 protein; putativ 98.3 2.4E-07 8.1E-12 65.5 1.6 55 20-74 2-59 (117)
145 2xpi_A Anaphase-promoting comp 98.2 2.9E-06 9.8E-11 75.5 8.8 72 3-74 368-439 (597)
146 1qqe_A Vesicular transport pro 98.2 1.5E-06 5E-11 71.4 6.0 67 8-74 117-190 (292)
147 3edt_B KLC 2, kinesin light ch 98.2 1.3E-06 4.4E-11 69.4 5.5 71 4-74 81-159 (283)
148 4f3v_A ESX-1 secretion system 98.2 2.5E-06 8.6E-11 70.4 7.1 67 8-74 171-240 (282)
149 1ihg_A Cyclophilin 40; ppiase 98.2 1.3E-06 4.4E-11 74.8 4.9 67 8-74 223-305 (370)
150 3dra_A Protein farnesyltransfe 98.2 3.4E-06 1.2E-10 70.5 6.9 75 1-75 60-143 (306)
151 2ifu_A Gamma-SNAP; membrane fu 98.2 4.5E-06 1.5E-10 68.9 7.6 66 8-74 116-187 (307)
152 3nf1_A KLC 1, kinesin light ch 98.2 2.7E-06 9.1E-11 68.8 6.0 71 4-74 149-227 (311)
153 2qfc_A PLCR protein; TPR, HTH, 98.1 1.1E-05 3.7E-10 66.0 9.6 67 8-74 155-228 (293)
154 3ly7_A Transcriptional activat 98.1 5.5E-06 1.9E-10 70.7 7.8 72 2-74 271-342 (372)
155 3ro3_A PINS homolog, G-protein 98.1 6.8E-06 2.3E-10 59.4 7.4 66 9-74 50-121 (164)
156 3gw4_A Uncharacterized protein 98.1 3E-06 1E-10 64.5 5.4 70 5-74 63-139 (203)
157 3n71_A Histone lysine methyltr 98.1 2.3E-06 7.9E-11 76.0 5.3 72 4-75 347-426 (490)
158 3gw4_A Uncharacterized protein 98.1 4.6E-06 1.6E-10 63.4 6.3 69 6-74 24-98 (203)
159 1pc2_A Mitochondria fission pr 98.1 6E-06 2.1E-10 61.8 6.7 73 3-75 27-104 (152)
160 3nf1_A KLC 1, kinesin light ch 98.1 4.9E-06 1.7E-10 67.2 6.7 72 3-74 22-101 (311)
161 1dce_A Protein (RAB geranylger 98.1 3E-06 1E-10 76.6 5.9 73 2-74 57-141 (567)
162 3u64_A Protein TP_0956; tetrat 98.1 2.3E-06 8E-11 70.6 4.5 73 2-74 191-272 (301)
163 3ulq_A Response regulator aspa 98.1 9.1E-06 3.1E-10 68.7 8.2 67 8-74 224-296 (383)
164 3u3w_A Transcriptional activat 98.1 7.6E-06 2.6E-10 66.9 7.4 69 6-74 194-269 (293)
165 1ouv_A Conserved hypothetical 98.1 2E-05 6.7E-10 63.3 9.2 65 5-71 35-107 (273)
166 3ro3_A PINS homolog, G-protein 98.0 7.6E-06 2.6E-10 59.1 6.2 68 7-74 8-81 (164)
167 3u3w_A Transcriptional activat 98.0 6.2E-06 2.1E-10 67.4 6.2 67 8-74 155-228 (293)
168 4g1t_A Interferon-induced prot 98.0 8E-06 2.7E-10 70.5 6.7 73 2-74 203-279 (472)
169 3rjv_A Putative SEL1 repeat pr 98.0 1.2E-05 4E-10 62.9 6.7 68 4-71 81-158 (212)
170 3qwp_A SET and MYND domain-con 98.0 4.4E-06 1.5E-10 73.0 4.6 71 5-75 326-404 (429)
171 1klx_A Cysteine rich protein B 98.0 4.4E-05 1.5E-09 55.7 9.1 63 6-70 55-125 (138)
172 2ooe_A Cleavage stimulation fa 98.0 6.9E-06 2.4E-10 72.8 5.3 71 3-73 267-352 (530)
173 4a1s_A PINS, partner of inscut 98.0 1.9E-05 6.6E-10 66.7 7.8 68 6-73 46-117 (411)
174 2qfc_A PLCR protein; TPR, HTH, 98.0 1.2E-05 4.1E-10 65.7 6.3 66 9-74 197-269 (293)
175 3dra_A Protein farnesyltransfe 98.0 1.3E-05 4.3E-10 67.0 6.5 73 2-74 97-178 (306)
176 2kat_A Uncharacterized protein 97.9 1.3E-05 4.4E-10 55.9 5.5 50 25-74 2-51 (115)
177 3q15_A PSP28, response regulat 97.9 1.1E-05 3.6E-10 68.3 6.0 67 8-74 222-293 (378)
178 3sf4_A G-protein-signaling mod 97.9 4.9E-05 1.7E-09 63.6 10.0 70 5-74 6-79 (406)
179 1dce_A Protein (RAB geranylger 97.9 7.5E-06 2.6E-10 74.0 5.1 73 2-74 101-176 (567)
180 2ooe_A Cleavage stimulation fa 97.9 9.9E-06 3.4E-10 71.8 5.6 72 2-74 7-78 (530)
181 3dss_A Geranylgeranyl transfer 97.9 2.2E-05 7.6E-10 66.2 7.3 73 2-74 102-177 (331)
182 4a1s_A PINS, partner of inscut 97.9 1.6E-05 5.5E-10 67.2 6.5 72 3-74 77-158 (411)
183 3ro2_A PINS homolog, G-protein 97.9 2.4E-05 8.3E-10 63.2 7.2 66 9-74 44-115 (338)
184 3ulq_A Response regulator aspa 97.9 1.8E-05 6.2E-10 66.8 6.7 68 7-74 142-216 (383)
185 2ifu_A Gamma-SNAP; membrane fu 97.9 1.4E-05 4.8E-10 65.9 5.4 66 8-74 155-226 (307)
186 3dss_A Geranylgeranyl transfer 97.9 2.4E-05 8.1E-10 66.1 6.8 75 1-75 57-143 (331)
187 3q7a_A Farnesyltransferase alp 97.9 1.4E-05 4.7E-10 68.0 5.2 73 2-74 82-157 (349)
188 3ro2_A PINS homolog, G-protein 97.9 7.7E-05 2.6E-09 60.2 9.6 67 8-74 5-75 (338)
189 3sf4_A G-protein-signaling mod 97.9 3E-05 1E-09 64.9 7.2 71 4-74 39-119 (406)
190 3rjv_A Putative SEL1 repeat pr 97.8 3.3E-05 1.1E-09 60.3 6.5 63 5-70 15-81 (212)
191 3q7a_A Farnesyltransferase alp 97.8 4.1E-05 1.4E-09 65.0 6.6 74 1-74 152-240 (349)
192 2v5f_A Prolyl 4-hydroxylase su 97.7 7E-05 2.4E-09 51.9 6.2 47 5-51 43-89 (104)
193 3ma5_A Tetratricopeptide repea 97.7 1.7E-05 5.9E-10 54.3 2.9 39 2-40 35-73 (100)
194 3q15_A PSP28, response regulat 97.6 8.2E-05 2.8E-09 62.8 6.7 69 6-74 139-214 (378)
195 1hz4_A MALT regulatory protein 97.6 0.00015 5.2E-09 60.6 7.8 69 5-73 132-205 (373)
196 1hz4_A MALT regulatory protein 97.6 0.00011 3.8E-09 61.5 6.8 66 9-74 94-167 (373)
197 4f3v_A ESX-1 secretion system 97.5 8.9E-05 3E-09 61.1 4.7 66 3-69 131-198 (282)
198 3bee_A Putative YFRE protein; 97.5 5.7E-05 2E-09 51.6 2.8 41 2-42 37-77 (93)
199 3n71_A Histone lysine methyltr 97.4 0.00016 5.4E-09 64.2 4.8 63 13-75 314-384 (490)
200 2xm6_A Protein corresponding t 97.3 0.001 3.5E-08 58.1 9.3 65 6-72 361-433 (490)
201 1klx_A Cysteine rich protein B 97.3 0.0011 3.8E-08 48.1 8.0 61 7-71 26-90 (138)
202 1xi4_A Clathrin heavy chain; a 97.3 0.00053 1.8E-08 67.5 7.6 65 4-73 1101-1165(1630)
203 1pc2_A Mitochondria fission pr 97.2 0.00034 1.1E-08 52.3 4.8 47 5-51 67-114 (152)
204 3u64_A Protein TP_0956; tetrat 97.2 0.001 3.4E-08 55.0 7.8 72 3-74 147-236 (301)
205 3mv2_B Coatomer subunit epsilo 97.1 0.0012 4E-08 55.1 7.7 69 5-73 97-167 (310)
206 3qww_A SET and MYND domain-con 97.1 0.00039 1.3E-08 60.7 4.9 61 15-75 305-373 (433)
207 3e4b_A ALGK; tetratricopeptide 97.1 0.00081 2.8E-08 58.6 6.7 63 7-69 175-244 (452)
208 2xm6_A Protein corresponding t 97.1 0.002 6.9E-08 56.2 9.2 62 6-69 37-106 (490)
209 4b4t_Q 26S proteasome regulato 97.0 0.0016 5.5E-08 55.2 7.5 70 5-74 132-207 (434)
210 3e4b_A ALGK; tetratricopeptide 97.0 0.0017 5.7E-08 56.6 7.5 63 4-69 209-278 (452)
211 3qwp_A SET and MYND domain-con 96.8 0.00088 3E-08 58.4 4.2 60 16-75 295-362 (429)
212 4b4t_Q 26S proteasome regulato 96.6 0.0028 9.6E-08 53.7 5.9 67 8-74 4-87 (434)
213 1nzn_A CGI-135 protein, fissio 96.5 0.0074 2.5E-07 43.5 6.5 71 4-74 31-106 (126)
214 3mv2_B Coatomer subunit epsilo 96.3 0.0026 8.8E-08 53.0 3.6 56 17-74 220-285 (310)
215 1nzn_A CGI-135 protein, fissio 96.3 0.01 3.5E-07 42.7 6.2 47 6-52 72-118 (126)
216 1b89_A Protein (clathrin heavy 96.2 0.0029 1E-07 55.3 3.7 52 9-68 123-174 (449)
217 4e6h_A MRNA 3'-END-processing 96.2 0.0088 3E-07 55.1 6.9 71 3-73 338-409 (679)
218 3ffl_A Anaphase-promoting comp 96.1 0.017 5.9E-07 43.5 7.0 58 8-65 63-145 (167)
219 2ff4_A Probable regulatory pro 96.1 0.028 9.5E-07 48.1 9.1 68 9-76 172-239 (388)
220 1zbp_A Hypothetical protein VP 95.9 0.025 8.6E-07 45.9 7.5 58 17-74 6-63 (273)
221 1b89_A Protein (clathrin heavy 95.6 0.023 7.9E-07 49.6 6.5 49 9-62 149-197 (449)
222 1y8m_A FIS1; mitochondria, unk 95.3 0.047 1.6E-06 40.1 6.5 70 5-74 36-109 (144)
223 3o48_A Mitochondria fission 1 95.3 0.029 1E-06 40.6 5.3 68 7-74 39-110 (134)
224 4e6h_A MRNA 3'-END-processing 95.1 0.036 1.2E-06 51.0 6.7 71 2-72 60-133 (679)
225 3ly7_A Transcriptional activat 94.4 0.029 9.8E-07 47.8 3.7 73 2-74 227-309 (372)
226 1xi4_A Clathrin heavy chain; a 94.3 0.083 2.8E-06 52.4 7.0 56 7-70 1194-1249(1630)
227 4gns_B Protein CSD3, chitin bi 94.1 0.12 4.1E-06 48.1 7.6 56 10-65 339-394 (754)
228 1y8m_A FIS1; mitochondria, unk 94.1 0.17 5.8E-06 37.0 6.9 46 6-51 75-120 (144)
229 3o48_A Mitochondria fission 1 94.0 0.15 5E-06 36.9 6.3 47 7-53 77-123 (134)
230 1ya0_A SMG-7 transcript varian 94.0 0.14 4.9E-06 45.2 7.6 60 10-69 154-213 (497)
231 4h7y_A Dual specificity protei 93.9 0.11 3.8E-06 38.6 5.5 70 1-71 6-89 (161)
232 3ffl_A Anaphase-promoting comp 90.8 0.4 1.4E-05 36.0 5.2 64 11-74 23-95 (167)
233 4g26_A Pentatricopeptide repea 88.9 1.6 5.4E-05 38.4 8.5 62 7-69 104-167 (501)
234 3mkq_A Coatomer beta'-subunit; 88.5 1.7 5.7E-05 39.6 8.7 62 4-65 677-746 (814)
235 4g26_A Pentatricopeptide repea 87.8 2.8 9.7E-05 36.8 9.4 63 7-70 139-203 (501)
236 4h7y_A Dual specificity protei 86.4 1.3 4.6E-05 32.7 5.4 65 8-73 61-125 (161)
237 4b4t_R RPN7, 26S proteasome re 83.4 1.4 4.7E-05 38.0 5.0 66 8-73 131-199 (429)
238 2uy1_A Cleavage stimulation fa 83.3 2.8 9.5E-05 36.7 7.0 48 26-74 197-244 (493)
239 1zbp_A Hypothetical protein VP 82.8 2.9 9.8E-05 33.9 6.3 44 2-45 25-68 (273)
240 2crb_A Nuclear receptor bindin 82.3 1.6 5.4E-05 29.3 3.8 27 9-35 16-42 (97)
241 3mkq_B Coatomer subunit alpha; 81.5 3.5 0.00012 31.1 6.0 58 6-71 6-63 (177)
242 2uy1_A Cleavage stimulation fa 81.0 2.3 7.8E-05 37.2 5.6 47 4-51 209-255 (493)
243 3ax2_A Mitochondrial import re 78.7 3.8 0.00013 26.2 4.6 34 12-45 21-54 (73)
244 2ijq_A Hypothetical protein; s 75.7 14 0.00047 27.4 7.6 64 11-74 35-107 (161)
245 1ya0_A SMG-7 transcript varian 72.4 4.2 0.00015 35.8 4.8 52 3-54 181-232 (497)
246 1wy6_A Hypothetical protein ST 68.3 20 0.00067 26.2 6.7 55 16-70 99-153 (172)
247 2w2u_A Hypothetical P60 katani 65.8 7.3 0.00025 25.4 3.8 22 53-74 30-51 (83)
248 3spa_A Mtrpol, DNA-directed RN 64.3 19 0.00065 34.9 7.6 58 10-68 129-191 (1134)
249 3spa_A Mtrpol, DNA-directed RN 64.1 24 0.00081 34.2 8.2 63 7-70 164-229 (1134)
250 3mkq_A Coatomer beta'-subunit; 63.9 6 0.00021 35.8 4.2 32 38-69 677-708 (814)
251 3esl_A Checkpoint serine/threo 63.6 33 0.0011 26.3 7.7 69 2-71 74-144 (202)
252 4gns_B Protein CSD3, chitin bi 62.3 24 0.00081 32.8 7.8 50 6-56 611-660 (754)
253 2v6y_A AAA family ATPase, P60 62.0 9.4 0.00032 24.8 3.8 22 53-74 22-43 (83)
254 3txn_A 26S proteasome regulato 60.0 20 0.0007 30.4 6.5 61 12-72 103-169 (394)
255 3kae_A CDC27, possible protein 58.4 17 0.0006 27.6 5.0 42 3-44 108-150 (242)
256 4a5x_A MITD1, MIT domain-conta 58.3 12 0.00041 24.5 3.8 19 54-72 28-46 (86)
257 3t5x_A PCI domain-containing p 57.7 20 0.00067 27.4 5.6 35 8-42 14-48 (203)
258 1om2_A Protein (mitochondrial 56.7 7.3 0.00025 26.2 2.5 30 12-41 24-53 (95)
259 2crb_A Nuclear receptor bindin 56.3 31 0.001 23.0 5.4 35 43-77 16-50 (97)
260 1wfd_A Hypothetical protein 15 55.9 13 0.00046 24.6 3.8 21 54-74 27-47 (93)
261 2v6x_A Vacuolar protein sortin 55.3 14 0.00048 23.9 3.8 21 54-74 25-45 (85)
262 2ahq_A Sigma-54, RNA polymeras 54.1 8 0.00027 24.8 2.3 34 160-194 22-55 (76)
263 2ql3_A Probable transcriptiona 53.3 14 0.00049 26.8 4.1 58 135-197 4-61 (209)
264 3re2_A Predicted protein; meni 53.3 59 0.002 27.5 7.9 68 6-73 253-327 (472)
265 3kae_A CDC27, possible protein 50.5 66 0.0023 24.4 7.1 63 8-70 62-142 (242)
266 3t5v_B Nuclear mRNA export pro 50.4 30 0.001 30.0 6.1 64 11-74 179-253 (455)
267 3mkq_B Coatomer subunit alpha; 50.0 34 0.0012 25.6 5.6 30 6-35 32-61 (177)
268 2cpt_A SKD1 protein, vacuolar 48.2 15 0.0005 25.6 3.1 22 53-74 29-50 (117)
269 3u84_A Menin; MLL, JUND, ledgf 48.1 75 0.0026 27.5 7.8 68 6-73 275-349 (550)
270 2cfu_A SDSA1; SDS-hydrolase, l 47.7 29 0.001 31.5 5.8 50 8-57 449-498 (658)
271 4gq4_A Menin; tumor suppressor 45.3 89 0.0031 26.9 7.9 69 6-74 260-335 (489)
272 2hxr_A HTH-type transcriptiona 45.2 17 0.00058 27.1 3.4 58 134-196 28-85 (238)
273 4b4t_S RPN3, 26S proteasome re 44.0 27 0.00093 30.9 4.8 64 8-73 231-301 (523)
274 3lpz_A GET4 (YOR164C homolog); 43.7 56 0.0019 27.1 6.4 27 5-31 133-159 (336)
275 3jv9_A OXYR, transcriptional r 42.7 11 0.00036 27.6 1.8 59 135-198 3-61 (219)
276 4a1g_A Mitotic checkpoint seri 41.8 63 0.0022 23.5 5.8 64 2-71 65-130 (152)
277 2y7p_A LYSR-type regulatory pr 41.8 9.8 0.00033 28.4 1.5 60 132-197 4-64 (218)
278 2cwy_A Hypothetical protein TT 41.3 73 0.0025 21.0 5.6 60 13-74 6-71 (94)
279 4ab5_A Transcriptional regulat 40.1 10 0.00035 27.8 1.3 59 134-197 6-64 (222)
280 1qsa_A Protein (soluble lytic 39.9 43 0.0015 30.2 5.6 58 12-70 290-347 (618)
281 3oxn_A Putative transcriptiona 39.5 12 0.00041 28.1 1.6 61 132-197 15-75 (241)
282 4fhn_B Nucleoporin NUP120; pro 39.3 61 0.0021 31.4 6.9 30 5-34 839-868 (1139)
283 4gq2_M Nucleoporin NUP120; bet 39.1 42 0.0014 31.9 5.6 32 5-36 837-868 (950)
284 3onm_A Transcriptional regulat 38.6 19 0.00064 27.0 2.7 61 133-198 24-84 (238)
285 2rpa_A Katanin P60 ATPase-cont 38.4 23 0.00078 22.8 2.6 28 48-75 18-45 (78)
286 1b93_A Protein (methylglyoxal 37.5 27 0.00092 25.5 3.2 36 177-213 70-107 (152)
287 2wpv_A GET4, UPF0363 protein Y 37.3 70 0.0024 26.1 6.1 27 6-32 132-158 (312)
288 2xw6_A MGS, methylglyoxal synt 37.2 21 0.00071 25.5 2.5 33 180-212 64-98 (134)
289 3t5x_A PCI domain-containing p 36.1 41 0.0014 25.5 4.3 33 42-74 14-46 (203)
290 1i6a_A OXYR, hydrogen peroxide 36.1 16 0.00054 27.0 1.8 56 135-196 4-60 (219)
291 3ho7_A OXYR; beta-alpha-barrel 35.5 16 0.00056 26.9 1.9 59 134-198 9-68 (232)
292 2wvi_A Mitotic checkpoint seri 35.3 1.2E+02 0.0042 22.2 6.6 65 2-72 60-126 (164)
293 3gve_A YFKN protein; alpha-bet 35.1 36 0.0012 28.1 4.0 38 161-202 201-251 (341)
294 4a1g_A Mitotic checkpoint seri 34.7 40 0.0014 24.6 3.7 37 6-42 99-135 (152)
295 2g0u_A Type III secretion syst 34.0 61 0.0021 21.5 4.1 61 10-73 17-78 (92)
296 2fyi_A HTH-type transcriptiona 32.9 18 0.00063 26.8 1.8 58 134-197 12-70 (228)
297 3myv_A SUSD superfamily protei 31.6 1E+02 0.0035 26.2 6.5 48 25-72 165-220 (454)
298 4b4t_S RPN3, 26S proteasome re 31.5 25 0.00085 31.1 2.5 35 8-42 270-304 (523)
299 1vmd_A MGS, methylglyoxal synt 31.2 38 0.0013 25.4 3.2 34 180-213 88-123 (178)
300 3lew_A SUSD-like carbohydrate 30.4 1.4E+02 0.0047 25.8 7.2 46 26-71 176-232 (495)
301 3txn_A 26S proteasome regulato 30.3 1.9E+02 0.0065 24.3 7.8 63 8-70 139-209 (394)
302 2ff4_A Probable regulatory pro 30.0 56 0.0019 27.3 4.5 34 3-36 200-233 (388)
303 4fhn_B Nucleoporin NUP120; pro 29.5 79 0.0027 30.6 5.9 58 6-63 897-959 (1139)
304 2wvi_A Mitotic checkpoint seri 29.4 54 0.0019 24.2 3.7 37 6-42 94-130 (164)
305 3esl_A Checkpoint serine/threo 28.7 55 0.0019 25.1 3.7 35 6-40 113-147 (202)
306 3kez_A Putative sugar binding 28.5 1.5E+02 0.0052 25.2 7.1 48 25-72 171-226 (461)
307 3cvg_A Putative metal binding 28.3 28 0.00096 27.7 2.2 57 134-196 18-80 (294)
308 4b4t_P 26S proteasome regulato 27.5 1.8E+02 0.0063 24.6 7.4 62 9-70 138-205 (445)
309 4aez_C MAD3, mitotic spindle c 27.1 59 0.002 25.3 3.7 61 3-73 115-181 (223)
310 1ixc_A CBNR, LYSR-type regulat 26.9 50 0.0017 25.4 3.4 59 134-197 89-147 (294)
311 1hym_A CMTI-V, hydrolyzed cucu 26.4 31 0.0011 19.6 1.5 25 168-193 8-32 (45)
312 4aez_C MAD3, mitotic spindle c 26.0 1.7E+02 0.0057 22.7 6.1 32 7-38 149-180 (223)
313 2pjk_A 178AA long hypothetical 25.1 1.1E+02 0.0037 22.6 4.8 70 134-205 12-95 (178)
314 3caw_A O-succinylbenzoate synt 24.3 54 0.0018 26.7 3.2 42 180-221 139-183 (330)
315 4gq2_M Nucleoporin NUP120; bet 23.6 97 0.0033 29.4 5.2 52 14-69 816-867 (950)
316 3mcx_A SUSD superfamily protei 23.3 1.5E+02 0.0052 25.3 6.1 47 25-71 177-231 (477)
317 1al3_A Cys regulon transcripti 22.3 40 0.0014 26.7 2.1 59 134-197 91-149 (324)
318 3fzv_A Probable transcriptiona 22.2 38 0.0013 26.3 1.9 58 134-197 93-151 (306)
319 2dl1_A Spartin; SPG20, MIT, st 21.8 75 0.0026 22.0 3.0 23 53-75 33-55 (116)
320 4gof_A Small glutamine-rich te 20.7 64 0.0022 18.9 2.2 19 24-42 30-48 (52)
321 1twy_A ABC transporter, peripl 20.5 43 0.0015 25.6 1.8 58 133-197 25-83 (290)
322 4b4t_P 26S proteasome regulato 20.3 3.9E+02 0.013 22.5 8.1 65 8-72 177-248 (445)
No 1
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=100.00 E-value=1.4e-47 Score=356.06 Aligned_cols=211 Identities=65% Similarity=0.995 Sum_probs=179.2
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCC
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~ 81 (222)
.++|+++.+|+++|.+|.++|++++|+++|++|++++|+++.++.+||.++..+|+|++|++.+++++++.++.++.+..
T Consensus 105 ~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~~~~~l 184 (723)
T 4gyw_A 105 QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 184 (723)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHHhhccC
Confidence 35788888888888888888888888888888888888888888888888888888888888888888888888887777
Q ss_pred CCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCc---ccchhccccceeeEeeccccccCCCchhh
Q psy17695 82 PSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLF---CVQRYAQRLESLYKVMWDRYSQNLPVTHI 158 (222)
Q Consensus 82 ~~~~p~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~rLRIGYvS~~d~~f~~H~v~~l 158 (222)
+...|+..+++++++..++.+++.++..+..... ....++.. ..+.+++|||||||| +| |++|||++|
T Consensus 185 ~~~~~~~~l~~~~~~~~~~aia~r~~~~~~~~~~------~~~~~~~~~~~~~~~~~~klrIGyvS-~d--f~~H~v~~~ 255 (723)
T 4gyw_A 185 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKIN------VLHKPPYEHPKDLKLSDGRLRVGYVS-SD--FGNHPTSHL 255 (723)
T ss_dssp CSSCTTGGGGSCCCHHHHHHHHHHHHHHHHHHHH------TTTCCCCCCCCSSTTTTTCEEEEEEE-SC--SSSSHHHHH
T ss_pred cccchhhhhhhhcCHHHHHHHHHHHHHhhhhhhh------cccCccccCccccccccccceeeeec-hh--hccCcHHHH
Confidence 8888999999999999999999888765543322 11111211 223467899999999 99 999999999
Q ss_pred H---------------------------HHHHHhhhcceeecCCC-CChHHHHHHHHhCCCcEEEeCCCCCCCcchhhhh
Q psy17695 159 T---------------------------QAKIAREAEHFLDLSQV-PCNGKAADRIHKDGIHILVNMNGYTKGARNEIFA 210 (222)
Q Consensus 159 ~---------------------------~~~~~~~~~~~~~~~~~-~~~~~~a~~i~~d~iDILvDL~G~t~~~r~~i~a 210 (222)
+ |.+++..+++|++++++ +| .+++++|++|+|||||||+|||.++|+.||+
T Consensus 256 ~~~~~~~~d~~~fei~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~a~~i~~d~iDIlidl~g~t~~~r~~i~a 334 (723)
T 4gyw_A 256 MQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCN-GKAADRIHQDGIHILVNMNGYTKGARNELFA 334 (723)
T ss_dssp HTTHHHHSCTTTEEEEEEESSCCCSCHHHHHHHHHSSEEEEGGGCCCH-HHHHHHHHHTTCSEEEESCSSBTTCCTHHHH
T ss_pred HHHHHHHhccCceeEEEEEcCCCCccHHHHHHHHhhccccccccCCcH-HHHHHHHHhccceeEEeccCCCCCCcchhhh
Confidence 9 67899999999999998 55 7999999999999999999999999999999
Q ss_pred hCCchhhhcccC
Q psy17695 211 LRPAPIQSSFTA 222 (222)
Q Consensus 211 ~rpAPvQv~~lG 222 (222)
+|||||||+|||
T Consensus 335 ~r~APvQv~~lG 346 (723)
T 4gyw_A 335 LRPAPIQAMWLG 346 (723)
T ss_dssp TCCSSEEEECSS
T ss_pred cCCCCceeeecc
Confidence 999999999998
No 2
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.91 E-value=1.9e-23 Score=188.45 Aligned_cols=205 Identities=20% Similarity=0.230 Sum_probs=151.4
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh-----
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQL----- 76 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l----- 76 (222)
..+|+++.+++++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|.+.++++++..|+..
T Consensus 51 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 130 (568)
T 2vsy_A 51 ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQ 130 (568)
T ss_dssp TTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 467888888888888888888888888888888888888888888888888888888888888888877665420
Q ss_pred ------hc---C---------------CCCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCc-cc
Q psy17695 77 ------DK---N---------------RLPSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLF-CV 131 (222)
Q Consensus 77 ------~~---~---------------~~~~~~p~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 131 (222)
.. + .+.+..||..+. +.++..++..+..+...... ..| .|.+ .+
T Consensus 131 l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~ 199 (568)
T 2vsy_A 131 LLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS-EDASAAEQLACARTRAQAIA-----ASV-----RPLAPTR 199 (568)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT-SCCCHHHHHHHHHHHHHHHH-----TTC-----CCCCCCC
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC-CCCHHHHHHHHHHHHHhccC-----ccc-----CCCCCCC
Confidence 01 1 123345665555 66666666666555432111 011 1121 22
Q ss_pred chhccccceeeEeeccccccCCCchhhH-----------------------------HHHHHhhhcceeecCCCCChHHH
Q psy17695 132 QRYAQRLESLYKVMWDRYSQNLPVTHIT-----------------------------QAKIAREAEHFLDLSQVPCNGKA 182 (222)
Q Consensus 132 ~~~~~rLRIGYvS~~d~~f~~H~v~~l~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 182 (222)
..+++++|||||| ++ |..|+++.++ +.+++... .|+++..++. .++
T Consensus 200 ~~~~~~~rI~~~~-~~--~~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~l 274 (568)
T 2vsy_A 200 VRSKGPLRVGFVS-NG--FGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQAS-TLHDVTALGH-LAT 274 (568)
T ss_dssp CCSSSCEEEEEEE-SC--SSSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSCHHHHHHHHTS-EEEECTTCCH-HHH
T ss_pred CCCCCCeEEEEEC-cc--cccChHHHHHHHHHhhccCCcccEEEEEEECCCCCccHHHHHHHhcC-eEEECCCCCH-HHH
Confidence 3357899999999 99 9999998866 12333334 6778877786 799
Q ss_pred HHHHHhCCCcEEEeCCCCCCCcchhhhhhCCchhhhcccC
Q psy17695 183 ADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQSSFTA 222 (222)
Q Consensus 183 a~~i~~d~iDILvDL~G~t~~~r~~i~a~rpAPvQv~~lG 222 (222)
.+.|+++++||+++++|||.++++.+++.|++|||++|+|
T Consensus 275 ~~~i~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (568)
T 2vsy_A 275 AKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLA 314 (568)
T ss_dssp HHHHHHTTCSEEEECSSCTTCSSCHHHHTCCSSEEEEESS
T ss_pred HHHHHhCCCCEEEECCCCCCcchHHHHhcCCCceeEeeec
Confidence 9999999999999999999999999999999999999976
No 3
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.87 E-value=3e-23 Score=187.26 Aligned_cols=87 Identities=10% Similarity=-0.084 Sum_probs=76.5
Q ss_pred chhccccceeeEeeccccccCCCchhhH---------------------HHHHHhhhcceeecCCCC----ChHHHHHHH
Q psy17695 132 QRYAQRLESLYKVMWDRYSQNLPVTHIT---------------------QAKIAREAEHFLDLSQVP----CNGKAADRI 186 (222)
Q Consensus 132 ~~~~~rLRIGYvS~~d~~f~~H~v~~l~---------------------~~~~~~~~~~~~~~~~~~----~~~~~a~~i 186 (222)
..+++++||||+| +| |++|+|++++ -+.-++.+|+|+++++++ + ++++++|
T Consensus 270 ~~~~K~l~ig~ls-~f--~~~HsV~r~~~~~l~~dR~~FEV~~Ys~~~~D~~tr~~~d~f~~l~~~s~~~~~-~~ia~~I 345 (631)
T 3q3e_A 270 YRNNKPVMVVLLE-HF--HSAHSIYRTHSTSMIAAREHFYLIGLGSPSVDQAGQEVFDEFHLVAGDNMKQKL-EFIRSVC 345 (631)
T ss_dssp EETTEEEEEEECS-SC--CTTSHHHHHHHHHHHHHTTTSEEEEEECTTSCHHHHTTSSEEEECCCSSHHHHH-HHHHHHH
T ss_pred CCCCCeEEEEEeC-cc--cCCCcHHHHHHHHHHhhhhcEEEEEEeCCCCCHHHHhcCcEEEECCCCCccccH-HHHHHHH
Confidence 3468899999999 99 9999999877 123366789999999998 7 7999999
Q ss_pred HhCCCcEEEeCCCCCCCcchhhhhhCCchhhhcccC
Q psy17695 187 HKDGIHILVNMNGYTKGARNEIFALRPAPIQSSFTA 222 (222)
Q Consensus 187 ~~d~iDILvDL~G~t~~~r~~i~a~rpAPvQv~~lG 222 (222)
++|+|||||||+|||.+.+..++++|||||||+|+|
T Consensus 346 r~d~IDILVdL~g~t~~~~i~~aa~RpAPVQvs~lG 381 (631)
T 3q3e_A 346 ESNGAAIFYMPSIGMDMTTIFASNTRLAPIQAIALG 381 (631)
T ss_dssp HHHTCSEEEESCCSSSHHHHHHTTSCCSSEEEEECS
T ss_pred HhcCCCEEEECCCCCCchhHHHHhCCCchheEeccC
Confidence 999999999999999777777777999999999998
No 4
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.43 E-value=1.7e-13 Score=103.55 Aligned_cols=73 Identities=16% Similarity=-0.003 Sum_probs=51.2
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+|+++++++++|.++.++|++++|+.+|+++++++|+++.+|+++|.++..+|++++|+.+|++++++.|+
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 4566667777777777777777777777777777777777777777777777777777777777777766665
No 5
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.43 E-value=7.6e-13 Score=92.32 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=67.8
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+.+|+++.+++++|.++..+|++++|+.+|+++++++|+++.+++++|.++...|++++|.+.+++++++.++
T Consensus 1 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 1 MEDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999998876
No 6
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.41 E-value=2.4e-13 Score=102.70 Aligned_cols=73 Identities=8% Similarity=0.014 Sum_probs=70.1
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.++|+++.+|+++|.++..+|++++|+.+|++|++++|+++.+++++|.++..+|++++|..+|++++++.|+
T Consensus 64 ~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 64 IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999988765
No 7
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.39 E-value=7.6e-13 Score=96.44 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=56.4
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (222)
++|+.++++.++|..+.+.|++++|+.+|++|++++|+++.+++++|.++..+|++++|+..+++++++.|+.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 80 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF 80 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence 5677777777777777777777777777777777777777777777777777777777777777777776653
No 8
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.35 E-value=1.6e-12 Score=94.76 Aligned_cols=74 Identities=14% Similarity=0.266 Sum_probs=71.2
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (222)
..+|+++.+|+++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|...|++++++.|+.
T Consensus 41 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 41 KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999998863
No 9
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.30 E-value=2.2e-12 Score=93.20 Aligned_cols=73 Identities=14% Similarity=-0.065 Sum_probs=59.9
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|...++++++..|+
T Consensus 45 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 45 QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3578888888888888888888888888888888888888888888888888888888888888888877765
No 10
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.30 E-value=5.1e-12 Score=94.52 Aligned_cols=72 Identities=17% Similarity=0.111 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|...|++++++.|+
T Consensus 50 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 50 LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 355666666666666666666666666666666666666666666666666666666666666666555553
No 11
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.28 E-value=1.2e-12 Score=99.23 Aligned_cols=73 Identities=12% Similarity=0.139 Sum_probs=67.6
Q ss_pred CCCCCCHHHHHHHHHhcccCCCc----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHH
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNI----------PEAIQSYRTALKLKPDFPDAYCNLAHCLQIVC-----------DWTD 60 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~----------~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~-----------~~~~ 60 (222)
.++|+++++|+++|.++..+|++ ++|+.+|++|++++|+++.+++++|++|..+| ++++
T Consensus 30 ~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~e 109 (158)
T 1zu2_A 30 KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDL 109 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHH
Confidence 46899999999999999999886 59999999999999999999999999999875 8999
Q ss_pred HHHHHHHHHHHHHh
Q psy17695 61 YEARMKKLVSIVAE 74 (222)
Q Consensus 61 a~~~~~~~~~~~~~ 74 (222)
|+++|++++++.|+
T Consensus 110 A~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 110 ATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999988886
No 12
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.28 E-value=8.8e-12 Score=92.00 Aligned_cols=72 Identities=18% Similarity=0.100 Sum_probs=51.1
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|...|++++++.|+
T Consensus 47 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 47 LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 466777777777777777777777777777777777777777777777777777777777777777766664
No 13
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.28 E-value=9.6e-12 Score=90.51 Aligned_cols=70 Identities=16% Similarity=0.057 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695 6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (222)
+.+.++.+||.++.+.|++++|+.+|++|++++|+++.++.|+|.++..+|++++|+..+++++.+.|+.
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 4578999999999999999999999999999999999999999999999999999999999999999873
No 14
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.27 E-value=6.8e-12 Score=95.27 Aligned_cols=68 Identities=18% Similarity=0.137 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALKL-------KPDFPDAY----CNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l-------~P~~~~a~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (222)
+.+|+|+|.++..+|++++|+.+|++||++ +|+++.+| +++|.++..+|++++|+.+|++++++.|+.
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 449999999999999999999999999999 99999999 999999999999999999999999999984
No 15
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.27 E-value=2.6e-11 Score=85.87 Aligned_cols=73 Identities=14% Similarity=0.105 Sum_probs=70.9
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+|+++.+++++|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++.+.|+
T Consensus 13 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999886
No 16
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.25 E-value=2e-11 Score=87.70 Aligned_cols=73 Identities=21% Similarity=0.221 Sum_probs=63.7
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+|+++.+|.++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|...+++++++.|+
T Consensus 32 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 104 (126)
T 3upv_A 32 KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 104 (126)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcc
Confidence 3578888888999999998999999999999999999988888889998888889998888888888888865
No 17
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.24 E-value=7e-12 Score=93.82 Aligned_cols=74 Identities=9% Similarity=-0.023 Sum_probs=69.9
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (222)
..+|+++.+++++|.+|.++|++++|+.+|+++++++|+++.++.++|.++...|++++|+..|++++++.|+.
T Consensus 25 ~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 98 (150)
T 4ga2_A 25 PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ 98 (150)
T ss_dssp CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC
Confidence 45678889999999999999999999999999999999999999999999999999999999999999998863
No 18
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.23 E-value=1.3e-11 Score=92.26 Aligned_cols=74 Identities=8% Similarity=-0.071 Sum_probs=71.2
Q ss_pred CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+..+|+++.+++++|.++...|++++|+..|+++++++|+++.+++++|.++...|++++|+..|++++.+.|+
T Consensus 14 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 14 NEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999998886
No 19
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.22 E-value=1.2e-11 Score=92.62 Aligned_cols=73 Identities=14% Similarity=0.080 Sum_probs=68.0
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEAR-MKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~ 74 (222)
..+|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.++...++++++... +++++++.|+
T Consensus 59 ~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 59 NVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred HhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 468999999999999999999999999999999999999999999999999999999876655 5899988886
No 20
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.21 E-value=1.6e-11 Score=87.53 Aligned_cols=71 Identities=14% Similarity=0.073 Sum_probs=68.4
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+|+++.+++++|.++..+|++++|+.+|+++++++|+++.+++++|.++...|++++|...+++++...|+
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 58899999999999999999999999999999999999999999999999999999999999999988775
No 21
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.20 E-value=3.6e-11 Score=90.56 Aligned_cols=72 Identities=13% Similarity=0.189 Sum_probs=59.1
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|...|++++++.|+
T Consensus 40 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 40 IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 467888888888888888888888888888888888888888888888888888888888888888877775
No 22
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.17 E-value=4.1e-11 Score=88.36 Aligned_cols=74 Identities=8% Similarity=-0.075 Sum_probs=71.0
Q ss_pred CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+..+|+++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|+..|++++.+.|+
T Consensus 11 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 11 RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999998886
No 23
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.17 E-value=1.2e-10 Score=88.84 Aligned_cols=73 Identities=16% Similarity=0.200 Sum_probs=70.0
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (222)
.+|+++.++..+|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|...|++++++.|+.
T Consensus 102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 102 LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999988864
No 24
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.16 E-value=1.2e-10 Score=84.21 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+++.+++++|.++..+|++++|+.+|+++++++|+++.+++++|.++...|++++|...+++++.+.|+
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 38 RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 356666666666666666666666666666666666666666666666666666666666666666666664
No 25
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.14 E-value=3.2e-11 Score=112.09 Aligned_cols=71 Identities=24% Similarity=0.386 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+|+++.+|++||.+|.++|++++|+++|++|++++|+++.+++|+|.++..+|++++|++.|++++++.|+
T Consensus 39 ~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~ 109 (723)
T 4gyw_A 39 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109 (723)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 45555555555555555555555555555555555555555555555555555555555555555544443
No 26
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.11 E-value=6.3e-11 Score=86.13 Aligned_cols=72 Identities=11% Similarity=0.002 Sum_probs=66.3
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP-------DAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~-------~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
.++|+++.+|+++|.+|..+|++++|+..|+++++++|++. .++.++|.++..++++++|++.|++++...|
T Consensus 36 ~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 36 ELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 46899999999999999999999999999999999998763 5899999999999999999999999987654
No 27
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.10 E-value=1.4e-10 Score=91.73 Aligned_cols=73 Identities=11% Similarity=0.114 Sum_probs=66.1
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHH
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIV-----------CDWTDYEARMKKLVS 70 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~-----------~~~~~a~~~~~~~~~ 70 (222)
..+|+++.+++++|.++..+|++++|+.+|+++++++|+++.++.++|.++... |++++|+..++++++
T Consensus 33 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 112 (217)
T 2pl2_A 33 KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112 (217)
T ss_dssp TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999 999999999999988
Q ss_pred HHHh
Q psy17695 71 IVAE 74 (222)
Q Consensus 71 ~~~~ 74 (222)
+.|+
T Consensus 113 ~~P~ 116 (217)
T 2pl2_A 113 VNPR 116 (217)
T ss_dssp HCTT
T ss_pred hCcc
Confidence 8776
No 28
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.10 E-value=7e-11 Score=92.84 Aligned_cols=73 Identities=14% Similarity=0.028 Sum_probs=69.7
Q ss_pred CCCCCCHHHHHH----------------HHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17695 2 MKTPFFKVGILF----------------SNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARM 65 (222)
Q Consensus 2 ~~~P~~~~~~~~----------------lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 65 (222)
..+|+++.+|+. +|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|+..|
T Consensus 32 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 111 (208)
T 3urz_A 32 ALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMY 111 (208)
T ss_dssp HHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 357888999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy17695 66 KKLVSIVAE 74 (222)
Q Consensus 66 ~~~~~~~~~ 74 (222)
++++++.|+
T Consensus 112 ~~al~~~P~ 120 (208)
T 3urz_A 112 EKILQLEAD 120 (208)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHcCCC
Confidence 999999886
No 29
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.10 E-value=2.4e-10 Score=81.96 Aligned_cols=70 Identities=16% Similarity=0.246 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
|..++.+.++|..+...|++++|+..|+++++++|+++.++.++|.++..+|++++|+..+++++++.|+
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 70 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 5668899999999999999999999999999999999999999999999999999999999999998876
No 30
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.09 E-value=2.1e-10 Score=79.74 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=64.4
Q ss_pred CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
++.+++++|.++...|++++|+.+|+++++++|+++.++.++|.++..+|++++|...+++++++.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999876664
No 31
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.08 E-value=1.7e-10 Score=86.63 Aligned_cols=71 Identities=14% Similarity=0.020 Sum_probs=67.7
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+|.++.+|+++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|...|++++.+.|+
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 45667899999999999999999999999999999999999999999999999999999999999998886
No 32
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.07 E-value=4.7e-10 Score=75.19 Aligned_cols=70 Identities=20% Similarity=0.270 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
|.++.+++++|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...++++++..|+
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3578999999999999999999999999999999999999999999999999999999999999987664
No 33
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.06 E-value=8.6e-10 Score=78.60 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+++.+++++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus 45 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 45 RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116 (133)
T ss_dssp TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC
Confidence 456666666666666666666666666666666666666666666666666666666666666666555443
No 34
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.03 E-value=5.7e-10 Score=84.93 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+++..|+++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|...+.++....++
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~ 71 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT 71 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch
Confidence 578899999999999999999999999999999999999999999999999999999999998876664
No 35
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.03 E-value=3.9e-10 Score=77.85 Aligned_cols=72 Identities=11% Similarity=0.156 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+++.++..+|.++...|++++|+.+|+++++++|++..++.++|.++...|++++|...++++++..|+
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 479999999999999999999999999999999999999999999999999999999999999999876654
No 36
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.00 E-value=1.8e-09 Score=77.93 Aligned_cols=72 Identities=15% Similarity=0.105 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|.++..++.+|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++++.|+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 75 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 75 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence 468899999999999999999999999999999999999999999999999999999999999999988775
No 37
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.00 E-value=2.1e-10 Score=98.96 Aligned_cols=73 Identities=8% Similarity=-0.008 Sum_probs=51.5
Q ss_pred CCCCCCHHHHHHHHHhcccCCC-cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGN-IPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~-~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.++|+++.+|+++|.++..+|+ +++|+.+|+++++++|+++.+|+++|.++..+|++++|+..|++++++.|+
T Consensus 125 ~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~ 198 (382)
T 2h6f_A 125 ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK 198 (382)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 3467777777777777777775 777777777777777777777777777777777777777777777766654
No 38
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.99 E-value=1.2e-09 Score=78.68 Aligned_cols=66 Identities=11% Similarity=0.012 Sum_probs=63.4
Q ss_pred HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..++.+|.++.+.|++++|+..|+++++++|+++.+++++|.++...|++++|+..+++++++.|+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 83 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 83 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 457899999999999999999999999999999999999999999999999999999999999886
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.99 E-value=9.2e-10 Score=86.93 Aligned_cols=70 Identities=20% Similarity=0.093 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
|+++.+++++|.++...|++++|+..|+++++++|+++.+++++|.++...|++++|+..+++++++.|+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 71 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR 71 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7889999999999999999999999999999999999999999999999999999999999999998886
No 40
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.99 E-value=1.3e-09 Score=81.87 Aligned_cols=72 Identities=13% Similarity=0.042 Sum_probs=68.7
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.++.++..++.+|.++...|++++|+.+|+++++++|+++.+++++|.++...|++++|+..+++++.+.|+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 456788999999999999999999999999999999999999999999999999999999999999998876
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.98 E-value=4.8e-10 Score=96.74 Aligned_cols=71 Identities=8% Similarity=0.014 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD-WTDYEARMKKLVSIVA 73 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~ 73 (222)
.+|+++.+|+++|.++...|++++|+.+|+++++++|++..+|+++|.++..+|+ +++|+..+++++.+.|
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P 163 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 163 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC
Confidence 3444455555555555555555555555555555555555555555555555553 5555555555554444
No 42
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.97 E-value=2.4e-09 Score=76.43 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=64.1
Q ss_pred CCCCCH---HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFK---VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~---~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+++ .+++.+|.++..+|++++|+..|+++++.+|++ +.+++++|.++..+|++++|...+++++...|+
T Consensus 31 ~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 31 LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 357776 799999999999999999999999999999999 888999999999999999999999988877664
No 43
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.97 E-value=2.1e-09 Score=74.31 Aligned_cols=71 Identities=13% Similarity=0.017 Sum_probs=64.7
Q ss_pred CCCCCHHHHHHHHHhcccCCC---cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 3 KTPFFKVGILFSNSSFPSPGN---IPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~---~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
.+|++++.+..+|.++...++ .++|...+++|++++|+++.+++.+|..+...|+|++|...+++++...|
T Consensus 1 ~~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 1 SNAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp -CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 379999999999999976555 89999999999999999999999999999999999999999999875544
No 44
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.95 E-value=1.6e-09 Score=82.14 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD-------FPD-----AYCNLAHCLQIVCDWTDYEARMKKLVSI 71 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~-------~~~-----a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 71 (222)
+..+.++|+.+...|++++|+.+|++|++++|+ +.. +|.|+|.++..+|+|++|+.++++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 577899999999999999999999999999999 544 9999999999999999999999999998
No 45
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.95 E-value=7.3e-10 Score=76.45 Aligned_cols=71 Identities=14% Similarity=0.089 Sum_probs=66.8
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD--FPDAYCNLAHCLQIV-CDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~--~~~a~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~ 73 (222)
.+|+++.++.++|.++..+|++++|+.+|+++++++|+ +..++.++|.++... |++++|.+.+++++...|
T Consensus 35 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 35 LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 57899999999999999999999999999999999999 999999999999999 999999999988875554
No 46
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.94 E-value=1.6e-09 Score=89.23 Aligned_cols=74 Identities=19% Similarity=0.210 Sum_probs=70.1
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (222)
..+|+++.+++++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|...+++++++.|+.
T Consensus 32 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 32 TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999863
No 47
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=2.3e-09 Score=77.89 Aligned_cols=72 Identities=17% Similarity=0.091 Sum_probs=48.9
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|.++..++.+|..+...|++++|+.+|+++++++|++ ..++.++|.++...+++++|...+++++...|+
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence 346666677777777777777777777777777777766 666677777777777777777666666666553
No 48
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.94 E-value=2.2e-09 Score=79.51 Aligned_cols=72 Identities=10% Similarity=0.049 Sum_probs=64.4
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+++.++.++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus 42 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~ 113 (166)
T 1a17_A 42 LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113 (166)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999988877765
No 49
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.92 E-value=3e-09 Score=73.82 Aligned_cols=66 Identities=17% Similarity=0.288 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV 69 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 69 (222)
+|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++
T Consensus 34 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 34 DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444445555555545555555555555555555444445555555444555544444444444
No 50
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.92 E-value=6.6e-09 Score=73.31 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
+|+++.++.++|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 42 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc
Confidence 4555555555555555555555555555555555555555555555555555555555555555554433
No 51
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.89 E-value=9.7e-10 Score=86.21 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=52.0
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD 57 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~ 57 (222)
.++|+++.+++++|.++..+|++++|+.+|+++++++|+++.+++++|.++...++
T Consensus 82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 46899999999999999999999999999999999999999999999999865543
No 52
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.88 E-value=3.1e-09 Score=89.72 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+.+++++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|...|++++++.|+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 262 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999998876
No 53
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.86 E-value=5.4e-09 Score=80.86 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=64.0
Q ss_pred HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.++.++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|...+++++.+.|+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 899999999999999999999999999999999999999999999999999999999999988775
No 54
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.84 E-value=8.7e-09 Score=73.25 Aligned_cols=72 Identities=17% Similarity=0.278 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..|..+.+++.+|.++...|++++|+.+|+++++++|++..++.++|.++...+++++|...+++++...|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 82 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 457889999999999999999999999999999999999999999999999999999999999999987664
No 55
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.84 E-value=1.9e-08 Score=70.34 Aligned_cols=72 Identities=21% Similarity=0.287 Sum_probs=52.6
Q ss_pred CCCCC-HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFF-KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~-~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|.. +.+++.+|.++...|++++|+..|+++++.+|++..++.+++.++...|++++|...+++++...|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence 35555 6777778888888888888888888888888877777788888877778888887777777766553
No 56
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.84 E-value=9.9e-09 Score=84.91 Aligned_cols=72 Identities=14% Similarity=0.036 Sum_probs=64.2
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTD-YEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~ 74 (222)
.+|+++.+++++|.++..+|++++|+..|+++++++|+++.++.|+|.++...|++.+ +.+++++++++.|+
T Consensus 195 ~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 195 KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 4789999999999999999999999999999999999999999999999999999876 56788888888876
No 57
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=4.9e-09 Score=79.75 Aligned_cols=68 Identities=10% Similarity=0.014 Sum_probs=58.7
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF--PDAYCNLAHCLQIVCDWTDYEARMKKLVS 70 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~--~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 70 (222)
.+|+++.+++++|.++...|++++|+.+|+++++++|++ +.++.+++.++...|+.++|...|++++.
T Consensus 103 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 103 ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 478889999999999999999999999999999998876 56888999999999999888888887764
No 58
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.83 E-value=9.3e-09 Score=70.29 Aligned_cols=64 Identities=19% Similarity=0.311 Sum_probs=61.0
Q ss_pred HHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 11 ILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPD-AYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 11 ~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~-a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+++|.++...|++++|+..|+++++++|+++. +++++|.++...|++++|...|++++++.|+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 367899999999999999999999999999999 9999999999999999999999999988876
No 59
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.82 E-value=6.4e-09 Score=81.81 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+..+++++|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..++++++..|+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 108 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG 108 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 566666667777777777777777777777777776667777777777777777777666666666554
No 60
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.81 E-value=1.8e-08 Score=71.18 Aligned_cols=70 Identities=14% Similarity=0.044 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
|..+..++.+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence 4457899999999999999999999999999999999999999999999999999999999999998886
No 61
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.81 E-value=6.6e-09 Score=78.60 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=66.6
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHC-LQIVCDW--TDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~-~~~~~~~--~~a~~~~~~~~~~~~~ 74 (222)
.+|+++.+|..+|.++...|++++|+.+|+++++++|+++.++.++|.+ +...|++ ++|...+++++...|+
T Consensus 39 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~ 113 (177)
T 2e2e_A 39 ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSN 113 (177)
T ss_dssp HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT
T ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC
Confidence 5799999999999999999999999999999999999999999999999 7789998 9999999999988775
No 62
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.81 E-value=4.5e-09 Score=82.72 Aligned_cols=73 Identities=14% Similarity=0.102 Sum_probs=68.9
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP-------DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~-------~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+|+++.++.++|.++..+|++++|+.+|+++++++|+++ .++.++|.++...|++++|+..|+++++..|+
T Consensus 70 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 70 KKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999999999999999999999999 77999999999999999999999999987665
No 63
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.80 E-value=7.3e-09 Score=91.73 Aligned_cols=73 Identities=10% Similarity=0.039 Sum_probs=69.7
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+|+++.+++++|.++.++|++++|+.+|++|++++|+++.+++++|.++..+|++++|++.+++++++.|+
T Consensus 34 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 106 (477)
T 1wao_1 34 ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 106 (477)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999988764
No 64
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.79 E-value=1.1e-08 Score=85.87 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=57.7
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++.+.|+
T Consensus 242 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 242 VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 467777888888888888888888888888888888888888888888888888888888888888877775
No 65
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=2.7e-08 Score=72.06 Aligned_cols=73 Identities=10% Similarity=-0.060 Sum_probs=68.8
Q ss_pred CCCCCC---HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFF---KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~---~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+|++ ..++.++|.++..+|++++|+.+|+++++++|+++.+++++|.++...|++++|...+++++...|+
T Consensus 56 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 56 GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 457877 8999999999999999999999999999999999999999999999999999999999999987765
No 66
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.78 E-value=1.1e-08 Score=81.82 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
+|+++.++.++|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 142 (275)
T 1xnf_A 73 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142 (275)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 4555555555555555555555555555555555555555555555555555555555555555554443
No 67
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.77 E-value=9.5e-09 Score=77.72 Aligned_cols=72 Identities=10% Similarity=-0.040 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHHHHh-cccCCCc--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSS-FPSPGNI--PEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~-l~~~g~~--~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+++.++.++|.+ +...|++ ++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus 73 ~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 73 LRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred cCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 468999999999999 8899999 99999999999999999999999999999999999999999999877664
No 68
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.76 E-value=8e-09 Score=80.09 Aligned_cols=67 Identities=9% Similarity=0.038 Sum_probs=58.4
Q ss_pred CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
++.+++++|.++..+|++++|+.+|+++++++|+++.+++++|.++...|++++|...++++++..|
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 102 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Confidence 6788888999999999999999999999999998888899999998888999998888888887554
No 69
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.76 E-value=3e-08 Score=76.77 Aligned_cols=65 Identities=9% Similarity=0.127 Sum_probs=59.1
Q ss_pred CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
....++++|.++...|++++|+..|++++ +| ++.+++++|.++...|++++|...+++++...|+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 69 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH 69 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 35678999999999999999999999995 55 7899999999999999999999999999988765
No 70
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.76 E-value=4.4e-08 Score=68.38 Aligned_cols=72 Identities=21% Similarity=0.294 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++.+++.++...|++++|...+++++...|+
T Consensus 38 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 109 (125)
T 1na0_A 38 LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109 (125)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 468899999999999999999999999999999999999999999999999999999999999999877664
No 71
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.75 E-value=1.3e-08 Score=71.92 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=66.4
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF-------PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~-------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
.+|+++.++.++|.++...|++++|+.+|++++++.|++ +.++.++|.++...|++++|...+++++...+
T Consensus 33 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 33 LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 478999999999999999999999999999999999988 99999999999999999999999999886544
No 72
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.75 E-value=3.4e-08 Score=68.34 Aligned_cols=69 Identities=23% Similarity=0.192 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+.+..++.+|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 346889999999999999999999999999999999999999999999999999999999999987664
No 73
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.75 E-value=1.9e-08 Score=84.28 Aligned_cols=74 Identities=18% Similarity=0.124 Sum_probs=69.8
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (222)
..+|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|+.
T Consensus 93 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 166 (365)
T 4eqf_A 93 LQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKY 166 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH
T ss_pred HhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999988864
No 74
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.75 E-value=8.6e-09 Score=90.67 Aligned_cols=67 Identities=9% Similarity=0.145 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+|+++|.++.++|++++|+.+|++|++++|+++.+++++|.++..++++++|...|++++++.|+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999988775
No 75
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.74 E-value=1.9e-08 Score=70.94 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=67.5
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|.++..+..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 78 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence 456778999999999999999999999999999999999999999999999999999999999999987664
No 76
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.73 E-value=9.8e-09 Score=88.06 Aligned_cols=72 Identities=21% Similarity=0.159 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|.++.+++++|.++..+|++++|+.+|++|++++|+++.+++++|.++..++++++|...+++++++.|+
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 457788999999999999999999999999999999999999999999999999999999999999988775
No 77
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.73 E-value=2.8e-08 Score=89.09 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=51.6
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+|+++.+++++|.++..+|++++|+++|+++++++|+++.++.++|.++...|++++|.+.++++++..|+
T Consensus 17 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 89 (568)
T 2vsy_A 17 RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89 (568)
T ss_dssp ----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 4567777777777777777777777777777777777777777777777777777777777777777776554
No 78
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=2.2e-08 Score=82.28 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
|.++.++..+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..+++++++.|+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 70 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 6789999999999999999999999999999999999999999999999999999999999999877665
No 79
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.72 E-value=3.4e-08 Score=77.93 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIV 72 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 72 (222)
+|+++.++.++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++++.
T Consensus 169 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 169 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 344445555555555555555555555555555555555555555555555555555555555554444
No 80
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.70 E-value=8.8e-08 Score=67.43 Aligned_cols=72 Identities=21% Similarity=0.282 Sum_probs=60.3
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+++.++..+|.++...|++++|+..|+++++.+|++..++.+++.++...|++++|...+++++...|+
T Consensus 30 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 30 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101 (136)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 357788888888888888888888888888888888888888888888888888888888888888776654
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.70 E-value=1e-07 Score=71.12 Aligned_cols=70 Identities=9% Similarity=-0.023 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
+|+++.++.++|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence 3444555555555555555555555555555555555555555555555555555555555555444433
No 82
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.70 E-value=3.8e-08 Score=82.16 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=53.9
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+++.+++++|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++.+.|+
T Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 356777777777777777777777777777777777777777777777777777777777777777777665
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.70 E-value=8.7e-08 Score=71.46 Aligned_cols=74 Identities=12% Similarity=0.014 Sum_probs=69.1
Q ss_pred CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+..+|+++.++..+|.++...|++++|+..|+++++++|++..++.++|.++...|++++|...+++++...|+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 108 (186)
T 3as5_A 35 YDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI 108 (186)
T ss_dssp CCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999887664
No 84
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.70 E-value=9.9e-09 Score=86.76 Aligned_cols=66 Identities=12% Similarity=0.033 Sum_probs=60.6
Q ss_pred HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+++++|.+|..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|...|++++++.|+
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 489999999999999999999999999999999999999999999999999999999999988876
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.69 E-value=5.7e-08 Score=78.08 Aligned_cols=73 Identities=12% Similarity=0.093 Sum_probs=68.6
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+|+++..++.+|..+...|++++|+..|+++++.+|++ +.+++++|.++...|++++|...|++++...|+
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~ 84 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI 84 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC
Confidence 3578999999999999999999999999999999999999 999999999999999999999999999998775
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.67 E-value=2.8e-08 Score=91.64 Aligned_cols=74 Identities=7% Similarity=-0.057 Sum_probs=67.5
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (222)
..+|+++++++++|.++..+|++++|+..|+++++++|+++.+++++|.++...|++++|++.|++++++.|+.
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 500 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE 500 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999988863
No 87
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.67 E-value=1.3e-08 Score=89.77 Aligned_cols=73 Identities=12% Similarity=0.053 Sum_probs=70.0
Q ss_pred CCCCCCHHHHHHHHHhcccC--------CCcHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695 2 MKTPFFKVGILFSNSSFPSP--------GNIPEAIQSYRTALKLKP---DFPDAYCNLAHCLQIVCDWTDYEARMKKLVS 70 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~--------g~~~eA~~~~~~Al~l~P---~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 70 (222)
..+|+++.+|+++|.+|..+ |++++|+.+|++|++++| +++.+++++|.++...|++++|.+.|+++++
T Consensus 207 ~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 207 QMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35899999999999999999 999999999999999999 9999999999999999999999999999998
Q ss_pred HHHh
Q psy17695 71 IVAE 74 (222)
Q Consensus 71 ~~~~ 74 (222)
+.|+
T Consensus 287 l~p~ 290 (474)
T 4abn_A 287 LDPA 290 (474)
T ss_dssp HCTT
T ss_pred hCCC
Confidence 8876
No 88
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.67 E-value=3.4e-08 Score=73.83 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=64.2
Q ss_pred CHHHHHHHHHhcccCCCcHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17695 7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKL------------------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKL 68 (222)
Q Consensus 7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l------------------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~ 68 (222)
.+..+..+|..+...|++++|+..|++|+++ +|.+..+++|+|.++..+|+|++|...++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4678999999999999999999999999999 7888899999999999999999999999999
Q ss_pred HHHHHh
Q psy17695 69 VSIVAE 74 (222)
Q Consensus 69 ~~~~~~ 74 (222)
+.+.|+
T Consensus 90 l~~~p~ 95 (162)
T 3rkv_A 90 LKREET 95 (162)
T ss_dssp HHHSTT
T ss_pred HhcCCc
Confidence 998876
No 89
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.66 E-value=3.3e-08 Score=81.36 Aligned_cols=70 Identities=11% Similarity=-0.041 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
+|+....+...+..+...++.++|+..|+++++++|+++.+++++|.++...|++++|.+.++++++..|
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 3444444444555555555555555555555555555555555555555555555555555555555444
No 90
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.65 E-value=2.3e-08 Score=84.36 Aligned_cols=71 Identities=11% Similarity=0.064 Sum_probs=67.6
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---------------PDAYCNLAHCLQIVCDWTDYEARMKKL 68 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---------------~~a~~~l~~~~~~~~~~~~a~~~~~~~ 68 (222)
+|+++.++.++|.++..+|++++|+.+|++|++++|++ ..++.|+|.++..+|++++|+..++++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46778999999999999999999999999999999999 699999999999999999999999999
Q ss_pred HHHHHh
Q psy17695 69 VSIVAE 74 (222)
Q Consensus 69 ~~~~~~ 74 (222)
+++.|+
T Consensus 223 l~~~p~ 228 (336)
T 1p5q_A 223 LELDSN 228 (336)
T ss_dssp HHHCTT
T ss_pred HHhCCC
Confidence 998876
No 91
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.65 E-value=4.4e-08 Score=82.91 Aligned_cols=70 Identities=31% Similarity=0.458 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
+|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.++...|++++|...++++++..|
T Consensus 233 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 302 (388)
T 1w3b_A 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 4555555555555555555555555555555555555555555555555555555555555555554443
No 92
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.65 E-value=4.8e-08 Score=82.67 Aligned_cols=72 Identities=29% Similarity=0.436 Sum_probs=53.9
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|.++.+|+.+|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus 62 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 133 (388)
T 1w3b_A 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133 (388)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 357777777777777777777777777777777777777777777777777777777777777777766554
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.65 E-value=7e-09 Score=95.63 Aligned_cols=73 Identities=10% Similarity=0.019 Sum_probs=66.9
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (222)
..+|+++.+|+++|.++..+|++++|+.+|++|++++|+++.++.++|.++..+|++++ ++.|++++++.|+.
T Consensus 461 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~ 533 (681)
T 2pzi_A 461 ERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV 533 (681)
T ss_dssp HHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC
T ss_pred ccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch
Confidence 35799999999999999999999999999999999999999999999999999999999 99999999887763
No 94
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.65 E-value=6e-08 Score=85.56 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=69.0
Q ss_pred CCCCCCHHHHHHHHHhcccCCCc-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNI-PEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~-~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
...|+++.+++.+|.++..+|++ ++|+.+|+++++++|+++.++.++|.++...|++++|.++|++++++.|+
T Consensus 96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 169 (474)
T 4abn_A 96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN 169 (474)
T ss_dssp TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC
T ss_pred ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35788999999999999999999 99999999999999999999999999999999999999999999877664
No 95
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.64 E-value=5.2e-08 Score=69.29 Aligned_cols=67 Identities=19% Similarity=0.124 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+++++.+|.++...|++++|+..|+++++.+|+++ .+++++|.++...|++++|...+++++...|+
T Consensus 2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (129)
T 2xev_A 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT 71 (129)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 35688999999999999999999999999999999 89999999999999999999999999988775
No 96
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.64 E-value=5.3e-08 Score=77.80 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=67.6
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+|.++.+++.+|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 109 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc
Confidence 35788999999999999999999999999999999999999999999999999999999999999988775
No 97
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.63 E-value=1.3e-07 Score=69.76 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=64.8
Q ss_pred CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+..+..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 79 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK 79 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 46789999999999999999999999999999999999999999999999999999999999988765
No 98
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.62 E-value=1.3e-07 Score=74.17 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=64.2
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+|+++.++..+|.++...|++++|+..|+++++++|++..++.++|.++...|++++|...++++++..|+
T Consensus 51 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 123 (243)
T 2q7f_A 51 EENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME 123 (243)
T ss_dssp TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 4578889999999999999999999999999999999999999999999999999999999988888877654
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.62 E-value=1.4e-07 Score=66.36 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=61.4
Q ss_pred HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+++.+|.++...|++++|+..|+++++.+|++..++.+++.++...|++++|...+++++...|.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 67 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 578999999999999999999999999999999999999999999999999999999999887654
No 100
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.62 E-value=8e-08 Score=80.13 Aligned_cols=73 Identities=16% Similarity=0.112 Sum_probs=63.0
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+|+++.++.++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus 92 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 164 (368)
T 1fch_A 92 QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA 164 (368)
T ss_dssp HSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3578888888889999888899999999999999888888888888888888888888888888888877665
No 101
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.61 E-value=7.5e-08 Score=75.92 Aligned_cols=72 Identities=17% Similarity=0.241 Sum_probs=68.7
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+++.++.++|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 578889999999999999999999999999999999999999999999999999999999999999987765
No 102
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.61 E-value=7.8e-08 Score=77.26 Aligned_cols=73 Identities=10% Similarity=0.034 Sum_probs=67.5
Q ss_pred CCCCCC---HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------cCCHHHHHHHHHH
Q psy17695 2 MKTPFF---KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---PDAYCNLAHCLQI--------VCDWTDYEARMKK 67 (222)
Q Consensus 2 ~~~P~~---~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~~l~~~~~~--------~~~~~~a~~~~~~ 67 (222)
..+|++ +.+++.+|.++..+|++++|+..|++++++.|++ +.+++++|.++.. .|++++|...+++
T Consensus 43 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~ 122 (261)
T 3qky_A 43 TYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQL 122 (261)
T ss_dssp GGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHH
T ss_pred HhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence 457888 9999999999999999999999999999998854 6789999999999 9999999999999
Q ss_pred HHHHHHh
Q psy17695 68 LVSIVAE 74 (222)
Q Consensus 68 ~~~~~~~ 74 (222)
++...|+
T Consensus 123 ~l~~~p~ 129 (261)
T 3qky_A 123 FIDRYPN 129 (261)
T ss_dssp HHHHCTT
T ss_pred HHHHCcC
Confidence 9988876
No 103
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.60 E-value=1.1e-07 Score=73.29 Aligned_cols=72 Identities=17% Similarity=0.044 Sum_probs=51.4
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|...+++++...|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 74 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 456667777777777777777777777777777777777777777777777777777777777777665543
No 104
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.59 E-value=1.7e-08 Score=69.79 Aligned_cols=62 Identities=16% Similarity=0.064 Sum_probs=56.3
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF------PDAYCNLAHCLQIVCDWTDYEA 63 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~ 63 (222)
..+|+++.+++++|.++..+|++++|+.+|+++++++|++ ..++.++|.++..+|+++++..
T Consensus 32 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 32 TAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSS
T ss_pred hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHh
Confidence 3579999999999999999999999999999999999999 8999999999988887766554
No 105
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.58 E-value=2.5e-07 Score=75.51 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+|+++.++.++|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 202 RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 45566666666666666666666666666666666666666666666666666666666666666655554
No 106
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.58 E-value=7.4e-08 Score=64.13 Aligned_cols=54 Identities=26% Similarity=0.286 Sum_probs=50.9
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVC 56 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~ 56 (222)
.+|+++.++.++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 38 LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 478999999999999999999999999999999999999999999999987654
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.55 E-value=5.8e-08 Score=79.91 Aligned_cols=69 Identities=16% Similarity=0.002 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
|++++.++.+|..+...|++++|+..|+++++++|+++.++.++|.++...|++++|++.+++++...|
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p 182 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ 182 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc
Confidence 788899999999999999999999999999999999999999999999999999999999988765444
No 108
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.55 E-value=2.7e-07 Score=71.08 Aligned_cols=71 Identities=23% Similarity=0.222 Sum_probs=52.7
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
.+|.+..++.++|.++...|++++|+..|+++++.+|+++.++.+++.++...|++++|...+++++...|
T Consensus 108 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 108 TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34566777777777777777777777777777777777777777777777777777777777777776655
No 109
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.53 E-value=3.9e-07 Score=71.31 Aligned_cols=72 Identities=11% Similarity=0.018 Sum_probs=64.6
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+++.++..+|.++..+|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus 86 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 157 (243)
T 2q7f_A 86 LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157 (243)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred cCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 468889999999999999999999999999999999999999999999999999999999999988877664
No 110
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.51 E-value=1.2e-07 Score=83.35 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=67.2
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---------------PDAYCNLAHCLQIVCDWTDYEARMKKL 68 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---------------~~a~~~l~~~~~~~~~~~~a~~~~~~~ 68 (222)
+|+++.++.++|.++.+.|++++|+.+|++|++++|++ ..++.|+|.|+..+++|++|+..++++
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999 799999999999999999999999999
Q ss_pred HHHHHh
Q psy17695 69 VSIVAE 74 (222)
Q Consensus 69 ~~~~~~ 74 (222)
+.+.|+
T Consensus 344 l~~~p~ 349 (457)
T 1kt0_A 344 LGLDSA 349 (457)
T ss_dssp HHHSTT
T ss_pred HhcCCc
Confidence 998876
No 111
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.49 E-value=1.1e-07 Score=78.44 Aligned_cols=71 Identities=20% Similarity=0.189 Sum_probs=54.5
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
.+|+++.+++++|.++..+|++++|+..|+++++++|++..++.++|.++...|++++|...+++++...|
T Consensus 32 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 32 GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 46777777777777777777777777777777777777777777777777777777777777777766555
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.49 E-value=1.6e-08 Score=76.90 Aligned_cols=69 Identities=13% Similarity=0.022 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIV 72 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 72 (222)
+|...+.++.+|..+...|++++|+..|+++++++|+++.++.++|.++...|++++|+..+++++...
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 70 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY 70 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc
Confidence 566677889999999999999999999999999999999999999999999999999999888776443
No 113
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.49 E-value=2.5e-07 Score=79.35 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=48.9
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+|+++..++.+|..+...|++++|+..|+++++.+|+++.+++++|.++...|++++|...++++++..|+
T Consensus 20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 92 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92 (450)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 3456666777777777777777777777777777777777777777777777777777777777666665543
No 114
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.49 E-value=3.2e-07 Score=74.89 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=62.1
Q ss_pred CCCCCHHHHHHHHHhcccCC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPG-NIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g-~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+++.++..+|.++...| ++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus 85 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 157 (330)
T 3hym_B 85 LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG 157 (330)
T ss_dssp HCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT
T ss_pred hCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc
Confidence 46888888888888888888 8888888888888888888888888888888888888888888888877665
No 115
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.48 E-value=1.9e-07 Score=73.81 Aligned_cols=70 Identities=19% Similarity=0.140 Sum_probs=47.2
Q ss_pred CCCC-HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 4 TPFF-KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 4 ~P~~-~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
+|++ +.+++.+|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|.+.+++++...|
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 102 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS 102 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3444 566667777777777777777777777777777777777777777777777777766666665544
No 116
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.48 E-value=4.4e-07 Score=69.89 Aligned_cols=69 Identities=23% Similarity=0.227 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695 6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP----------------DAYCNLAHCLQIVCDWTDYEARMKKLV 69 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~----------------~a~~~l~~~~~~~~~~~~a~~~~~~~~ 69 (222)
..+..+..+|.++...|++++|+..|++++++.|+++ .++.++|.++...|+|++|...+++++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999987 899999999999999999999999999
Q ss_pred HHHHh
Q psy17695 70 SIVAE 74 (222)
Q Consensus 70 ~~~~~ 74 (222)
...|+
T Consensus 116 ~~~p~ 120 (198)
T 2fbn_A 116 KIDKN 120 (198)
T ss_dssp HHSTT
T ss_pred HhCcc
Confidence 88775
No 117
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.48 E-value=1.6e-07 Score=77.66 Aligned_cols=71 Identities=10% Similarity=-0.096 Sum_probs=66.8
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPD-AYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~-a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
.+|++..+|.++|.++...|++++|+..|+++++++|+++. +|.+++.++...|++++|...|+++++..|
T Consensus 94 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 58999999999999999999999999999999999999987 999999999999999999999999986554
No 118
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.46 E-value=6.4e-07 Score=73.01 Aligned_cols=72 Identities=15% Similarity=0.064 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...++++++..|+
T Consensus 167 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 167 MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 468899999999999999999999999999999999999999999999999999999999999999887765
No 119
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.46 E-value=5.9e-07 Score=73.96 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+++.++..+|.++..+|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 220 (359)
T 3ieg_A 149 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 478999999999999999999999999999999999999999999999999999999999999999987765
No 120
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.46 E-value=4e-07 Score=71.95 Aligned_cols=66 Identities=11% Similarity=0.006 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV 69 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 69 (222)
+|.++.++.++|.++...|++++|+.+|+++++++|+++.++.+++.++...|++++|...+++++
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFA 202 (252)
T ss_dssp CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555555555554444443
No 121
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.45 E-value=4.6e-08 Score=66.72 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=55.9
Q ss_pred CCCCCCHH-HHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKV-GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~-~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+|+++. +++++|.++..+|++++|+.+|+++++++|++..++.+ +.+.++...|+++....|+
T Consensus 28 ~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 28 QTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHC
T ss_pred HHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcc
Confidence 35799999 99999999999999999999999999999999999865 3456677777777777765
No 122
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.45 E-value=2e-07 Score=76.16 Aligned_cols=71 Identities=14% Similarity=0.064 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
.+|+++.+|..+|.++...|++++|+.+|++++++.|++..++.++|.++...|++++|...+++++...|
T Consensus 120 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 190 (330)
T 3hym_B 120 LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190 (330)
T ss_dssp TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 45555566666666666666666666666666666666555555566665556666555555555554433
No 123
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.43 E-value=5e-07 Score=71.25 Aligned_cols=68 Identities=15% Similarity=0.063 Sum_probs=64.2
Q ss_pred CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+..++++|..+...|++++|+..|+++++..|+++ .+++++|.++...|+|++|+..|+++++..|+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~ 73 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 73 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 578899999999999999999999999999999874 79999999999999999999999999998886
No 124
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.43 E-value=2e-07 Score=77.04 Aligned_cols=72 Identities=14% Similarity=0.078 Sum_probs=65.9
Q ss_pred CCCCCHHHHHHHHHhcc-------cCCCc-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17695 3 KTPFFKVGILFSNSSFP-------SPGNI-------PEAIQSYRTALK-LKPDFPDAYCNLAHCLQIVCDWTDYEARMKK 67 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~-------~~g~~-------~eA~~~~~~Al~-l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 67 (222)
.+|+++.+|+++|..+. ..|++ ++|+..|++|++ ++|++..+|.++|.++...|++++|.+.|++
T Consensus 45 ~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 124 (308)
T 2ond_A 45 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNR 124 (308)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 47999999999999987 46887 999999999999 7999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy17695 68 LVSIVAE 74 (222)
Q Consensus 68 ~~~~~~~ 74 (222)
++++.|+
T Consensus 125 al~~~p~ 131 (308)
T 2ond_A 125 LLAIEDI 131 (308)
T ss_dssp HHTSSSS
T ss_pred HHhcccc
Confidence 9876553
No 125
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.42 E-value=4.7e-07 Score=77.63 Aligned_cols=71 Identities=20% Similarity=0.198 Sum_probs=67.4
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
.+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|
T Consensus 55 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 125 (450)
T 2y4t_A 55 GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC
T ss_pred hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999886554
No 126
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.41 E-value=6.7e-07 Score=79.55 Aligned_cols=71 Identities=8% Similarity=-0.084 Sum_probs=67.7
Q ss_pred CCCC-HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 4 TPFF-KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 4 ~P~~-~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+|++ ..+|.++|.++...|++++|+..|+++++++|+++.++..++.++...|+|++|.+.+++++++.|+
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 5665 8999999999999999999999999999999999999999999999999999999999999988876
No 127
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.38 E-value=4.5e-07 Score=72.41 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=30.3
Q ss_pred HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695 9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV 69 (222)
Q Consensus 9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 69 (222)
.++.++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 3344555555555555555555555555555555555555555555555555444444443
No 128
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.37 E-value=5.1e-08 Score=86.30 Aligned_cols=70 Identities=11% Similarity=0.054 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
++.+.++.++|.++.++|++++|+++|++|++++|+++.++.++|.++..+|++++|++.+++++++.|+
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 72 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK 72 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4456778899999999999999999999999999999999999999999999999999999999988765
No 129
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.36 E-value=3.5e-07 Score=73.05 Aligned_cols=72 Identities=8% Similarity=-0.145 Sum_probs=52.2
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF----PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~----~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+|+++.++..+|.++..+|++++|+..|+++++ .|++ ..++.++|.++...|++++|...++++++..|+
T Consensus 31 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 106 (272)
T 3u4t_A 31 AKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT 106 (272)
T ss_dssp HTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc
Confidence 35677777777777777777777777777777777 3333 344777777777777777777777777776654
No 130
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.35 E-value=1.8e-07 Score=70.79 Aligned_cols=49 Identities=18% Similarity=0.223 Sum_probs=42.9
Q ss_pred CCCCCCCHHHHHHHHHhcccCC-----------CcHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17695 1 MMKTPFFKVGILFSNSSFPSPG-----------NIPEAIQSYRTALKLKPDFPDAYCNLA 49 (222)
Q Consensus 1 l~~~P~~~~~~~~lg~~l~~~g-----------~~~eA~~~~~~Al~l~P~~~~a~~~l~ 49 (222)
|+++|+++.+|+++|++|..+| ++++|+++|++|++++|++..++.++-
T Consensus 73 L~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 73 LLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3579999999999999999885 899999999999999999876655543
No 131
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.35 E-value=1.6e-06 Score=75.01 Aligned_cols=71 Identities=14% Similarity=0.042 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL---------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l---------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (222)
+..+..+++||.++..+|++++|+.+|++|+++ +|+...++.|+|.++..+|++++|...+++++.+.+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 345678899999999999999999999999987 78889999999999999999999999999999988863
No 132
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.33 E-value=6.1e-07 Score=71.36 Aligned_cols=71 Identities=23% Similarity=0.273 Sum_probs=66.4
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL--------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+|....++.++|.++..+|++++|+.+|++++++ +|....++.++|.++...|++++|...+++++...++
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999999999999999999 7888899999999999999999999999999988765
No 133
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.33 E-value=1.5e-06 Score=76.08 Aligned_cols=71 Identities=11% Similarity=0.032 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus 340 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 340 NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 45555555555655555566666666666666666655555666666666666666666666665555554
No 134
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.33 E-value=1.3e-06 Score=76.36 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+|+++.++..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus 306 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 306 NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 56666666666666666666666666666666666666666666666666666666666666666665543
No 135
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.33 E-value=5.6e-07 Score=78.14 Aligned_cols=70 Identities=17% Similarity=0.130 Sum_probs=61.6
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
.+| ++.++.++|.++..+|++++|+.+|+++++++|+++.++..+|.++..+|++++|...|++++...|
T Consensus 35 ~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 104 (514)
T 2gw1_A 35 LKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104 (514)
T ss_dssp HCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred cCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 356 5889999999999999999999999999999999999999999999999999999999988876554
No 136
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.33 E-value=1.8e-06 Score=71.19 Aligned_cols=71 Identities=10% Similarity=0.018 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHH--HhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 4 TPFFKVGILFSN--SSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 4 ~P~~~~~~~~lg--~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+|++.......+ .++...|++++|+.+|+++++.+|+++.+++++|.++..+|+|++|++.+++++...|+
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 455543333222 33445577777777777777777888888888888999999999999999999888776
No 137
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.31 E-value=5e-07 Score=76.20 Aligned_cols=70 Identities=16% Similarity=0.102 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP-----------------DAYCNLAHCLQIVCDWTDYEARMKK 67 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~-----------------~a~~~l~~~~~~~~~~~~a~~~~~~ 67 (222)
+..+..+.++|..+...|++++|+.+|++|+++.|++. .++.|+|.++..+++|++|...+++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34678899999999999999999999999999999987 4999999999999999999999999
Q ss_pred HHHHHHh
Q psy17695 68 LVSIVAE 74 (222)
Q Consensus 68 ~~~~~~~ 74 (222)
++++.|+
T Consensus 256 al~~~p~ 262 (338)
T 2if4_A 256 VLTEEEK 262 (338)
T ss_dssp HHHHCTT
T ss_pred HHHhCCC
Confidence 9988775
No 138
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.31 E-value=1.3e-06 Score=71.77 Aligned_cols=67 Identities=16% Similarity=0.099 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF------PDAYCNLAHCLQIV-CDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~------~~a~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~ 74 (222)
+.++.++|.+|..+|++++|+.+|++|+++.|.. ..++.++|.++... |++++|+..|++++.+.++
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~ 150 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ 150 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999998764 56899999999996 9999999999999999885
No 139
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.31 E-value=2.8e-06 Score=59.25 Aligned_cols=68 Identities=13% Similarity=-0.064 Sum_probs=61.9
Q ss_pred CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLK-------PDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~-------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+.-.+.||..+.+.|++..|+..|++|++.. +..+..+.+||.++.++|+++.|...+++++.+.|+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 46678899999999999999999999999973 456889999999999999999999999999988876
No 140
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.30 E-value=2.6e-06 Score=68.55 Aligned_cols=66 Identities=8% Similarity=-0.071 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI----VCDWTDYEARMKKLVSI 71 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 71 (222)
+|+++.+++.+|.++...|++++|+.+|+++++ |+++.+++++|.++.. .+++++|...|+++++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 71 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 71 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence 577888888888888888888888888888887 7778888888888888 88888888888877654
No 141
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.30 E-value=1.5e-06 Score=75.37 Aligned_cols=72 Identities=10% Similarity=0.021 Sum_probs=59.1
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+++.++.++|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus 333 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 333 LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 567777888888888888888888888888888888888888888888888888888888888888877775
No 142
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.30 E-value=8.5e-07 Score=69.91 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=57.4
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 12 LFSNSSFPSPGNIPEAIQSYRTALKLKPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 12 ~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+|.++...|++++|+..|+++++..|+++ .++.++|.++..+|++++|...++.+....|+
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 6889999999999999999999999999987 78999999999999999999999877755554
No 143
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.27 E-value=9.3e-07 Score=77.42 Aligned_cols=71 Identities=10% Similarity=-0.023 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL-----KPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l-----~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (222)
|+-+..+++||.+|..+|+|++|+..|++++++ .|+++ ..++|||.++..+|++++|+..|++++++....
T Consensus 337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 444678999999999999999999999999977 35555 568999999999999999999999999988764
No 144
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.25 E-value=2.4e-07 Score=65.49 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=48.1
Q ss_pred cCCCcHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 20 SPGNIPEAIQSYRTALKL---KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 20 ~~g~~~eA~~~~~~Al~l---~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|++++|+.+|++++++ +|+++.++.++|.++..+|++++|+..++++++..|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 59 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN 59 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 479999999999999999 6999999999999999999999999999999998886
No 145
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.24 E-value=2.9e-06 Score=75.45 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=62.9
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+++.+++.+|.+|.+.|++++|+..|+++++++|++..++.+++.++...|++++|.+.|++++...|+
T Consensus 368 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (597)
T 2xpi_A 368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439 (597)
T ss_dssp HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT
T ss_pred hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 367888899999999999999999999999999999999999999999999999999999988888766553
No 146
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.23 E-value=1.5e-06 Score=71.41 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcccC-CCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 8 KVGILFSNSSFPSP-GNIPEAIQSYRTALKLKPDF------PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 8 ~~~~~~lg~~l~~~-g~~~eA~~~~~~Al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+.++.++|.+|... |++++|+.+|++|+++.|++ ..++.++|.++..+|++++|...|++++.+.++
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 56899999999996 99999999999999998865 578999999999999999999999999987765
No 147
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.22 E-value=1.3e-06 Score=69.42 Aligned_cols=71 Identities=21% Similarity=0.189 Sum_probs=65.3
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL--------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+|..+.++.++|.++..+|++++|+.+|++++++ +|....++.++|.++...|++++|...+++++.....
T Consensus 81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4566889999999999999999999999999999 5778899999999999999999999999999988654
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.21 E-value=2.5e-06 Score=70.43 Aligned_cols=67 Identities=12% Similarity=-0.085 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLK--PD-FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~--P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+++++|.++..+|++++|+.+|++++... |. .+++++++|.++..+|+.++|.+.|++++...|+
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 3589999999999999999999999999765 66 6789999999999999999999999999988775
No 149
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.18 E-value=1.3e-06 Score=74.76 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALK----------------LKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI 71 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~----------------l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 71 (222)
+..+..+|..+.+.|++++|+.+|++|++ ++|.+..++.|+|.++..+++|++|+..+++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 56799999999999999999999999999 88999999999999999999999999999999987
Q ss_pred HHh
Q psy17695 72 VAE 74 (222)
Q Consensus 72 ~~~ 74 (222)
.|+
T Consensus 303 ~p~ 305 (370)
T 1ihg_A 303 DPS 305 (370)
T ss_dssp CTT
T ss_pred Cch
Confidence 664
No 150
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.16 E-value=3.4e-06 Score=70.54 Aligned_cols=75 Identities=4% Similarity=-0.085 Sum_probs=69.5
Q ss_pred CCCCCCCHHHHHHHHHhcccCC--CcHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHH
Q psy17695 1 MMKTPFFKVGILFSNSSFPSPG--NIPEAIQSYRTALKLKPDFPDAYCNLAHCL----QIV---CDWTDYEARMKKLVSI 71 (222)
Q Consensus 1 l~~~P~~~~~~~~lg~~l~~~g--~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~----~~~---~~~~~a~~~~~~~~~~ 71 (222)
|.++|++..+|+..|.++..+| ++++++.+++++++++|++..+|++.+.++ ... ++++++.+.+.+++..
T Consensus 60 L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~ 139 (306)
T 3dra_A 60 INELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS 139 (306)
T ss_dssp HHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999 999999999999999999999999999999 666 7899999999999988
Q ss_pred HHhh
Q psy17695 72 VAEQ 75 (222)
Q Consensus 72 ~~~~ 75 (222)
.|+.
T Consensus 140 ~pkn 143 (306)
T 3dra_A 140 DPKN 143 (306)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 8863
No 151
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.15 E-value=4.5e-06 Score=68.94 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF------PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+.++.++|.+|.. |++++|+.+|++|+++.|.. ..++.++|.++..+|++++|...|++++.+.++
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4677888888888 88888888888888887654 567888888888888888888888888887775
No 152
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.15 E-value=2.7e-06 Score=68.76 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=65.8
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL--------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.|....++.++|.++...|++++|+.+|++++++ +|....++.++|.++...|++++|...+++++...++
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3566789999999999999999999999999999 7888899999999999999999999999999988765
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.14 E-value=1.1e-05 Score=65.98 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTAL---KLKPDFP----DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al---~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+++++|.+|..+|++++|+.+|++|+ +..|++. .+++|+|.++..+|++++|...+++++.+.++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6799999999999999999999999999 5567654 68999999999999999999999999988764
No 154
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.14 E-value=5.5e-06 Score=70.73 Aligned_cols=72 Identities=11% Similarity=0.015 Sum_probs=67.1
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+|.++.++..++.++...|++++|+..+++|++++|+ +.++..+|.++...|++++|.+.|.+++++.|.
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 457999999999999999899999999999999999985 788999999999999999999999999999875
No 155
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=6.8e-06 Score=59.38 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=50.2
Q ss_pred HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF------PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.++.++|.++..+|++++|+..|++++++.+.. ..++.++|.++...|++++|...+++++...++
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 121 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 121 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888888888775443 557778888888888888888888887777654
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.12 E-value=3e-06 Score=64.48 Aligned_cols=70 Identities=11% Similarity=0.029 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL---KPD----FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l---~P~----~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
|..+.++.++|.++..+|++++|+.+|++++++ .++ ...++.++|.++...|++++|...+++++.+.+.
T Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 345677888888888888888888888888888 443 3456888888888888888888888888877654
No 157
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.11 E-value=2.3e-06 Score=76.03 Aligned_cols=72 Identities=8% Similarity=-0.111 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL-----KPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l-----~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (222)
.|+-+..+++||.+|..+|+|++|+..|++++++ .|+++ ..++|||.++..+|++++|+..|++++++....
T Consensus 347 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~ 426 (490)
T 3n71_A 347 NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVT 426 (490)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999999999999999999977 46665 568999999999999999999999999988764
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.11 E-value=4.6e-06 Score=63.40 Aligned_cols=69 Identities=9% Similarity=0.050 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHhcccCCCcHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALK------LKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~------l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+.++.++|.++...|++++|+.+|+++++ ..|....++.++|.++...|++++|...+++++.+...
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 98 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS 98 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999 55667789999999999999999999999999998764
No 159
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.11 E-value=6e-06 Score=61.81 Aligned_cols=73 Identities=11% Similarity=-0.018 Sum_probs=67.4
Q ss_pred CCCCCHHHHHHHHHhcccCC---CcHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695 3 KTPFFKVGILFSNSSFPSPG---NIPEAIQSYRTALKLK-P-DFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g---~~~eA~~~~~~Al~l~-P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (222)
.+|.+.++.+++|.+|...+ +..+++..++..++.+ | ++.+++++||..+.+++++++|..+++++++..|+.
T Consensus 27 ~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 27 AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 46788999999999999998 6779999999999999 8 679999999999999999999999999999988863
No 160
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.11 E-value=4.9e-06 Score=67.15 Aligned_cols=72 Identities=17% Similarity=0.142 Sum_probs=66.3
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL--------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+|+.+.++..+|.++...|++++|+..|++++++ +|....++.++|.++...|++++|...+++++.....
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999996 6778899999999999999999999999999988643
No 161
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.10 E-value=3e-06 Score=76.62 Aligned_cols=73 Identities=8% Similarity=0.104 Sum_probs=56.5
Q ss_pred CCCCCCHHHHHHHHHhcccCCC----------cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGN----------IPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVC--DWTDYEARMKKLV 69 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~----------~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~--~~~~a~~~~~~~~ 69 (222)
..+|++..+|+..|.++..+|+ +++|+++++++++.+|++..+|++.+.++..++ +|+++.+.+.+++
T Consensus 57 ~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l 136 (567)
T 1dce_A 57 GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL 136 (567)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred HHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence 3577788888888888877777 778888888888888888888888888877777 6777777777777
Q ss_pred HHHHh
Q psy17695 70 SIVAE 74 (222)
Q Consensus 70 ~~~~~ 74 (222)
+..|+
T Consensus 137 ~~d~~ 141 (567)
T 1dce_A 137 EADER 141 (567)
T ss_dssp HHCTT
T ss_pred hhccc
Confidence 76654
No 162
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.10 E-value=2.3e-06 Score=70.64 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=65.5
Q ss_pred CCCCC--CHHHHHHHHHhcccC-----CCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q psy17695 2 MKTPF--FKVGILFSNSSFPSP-----GNIPEAIQSYRTALKLKPDF-PDAYCNLAHCLQI-VCDWTDYEARMKKLVSIV 72 (222)
Q Consensus 2 ~~~P~--~~~~~~~lg~~l~~~-----g~~~eA~~~~~~Al~l~P~~-~~a~~~l~~~~~~-~~~~~~a~~~~~~~~~~~ 72 (222)
.++|+ +..+|..||.+|... |+.++|.++|++|++++|+. ...++.+|..+.. .++.+++.+.++++++..
T Consensus 191 eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 191 DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 46888 677999999999995 99999999999999999975 9999999999988 599999999999998766
Q ss_pred Hh
Q psy17695 73 AE 74 (222)
Q Consensus 73 ~~ 74 (222)
|.
T Consensus 271 p~ 272 (301)
T 3u64_A 271 PE 272 (301)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 163
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.08 E-value=9.1e-06 Score=68.69 Aligned_cols=67 Identities=13% Similarity=0.111 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALK-----LK-PDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~-----l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+.++.++|.++..+|++++|+.+|++|++ .+ |..+.++.++|.++...|++++|...+++++.+.++
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999 46 888999999999999999999999999999988765
No 164
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.08 E-value=7.6e-06 Score=66.90 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHh
Q psy17695 6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF------PDAYCNLAHCLQIVCD-WTDYEARMKKLVSIVAE 74 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~------~~a~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~ 74 (222)
..+.+++++|.+|..+|++++|+.+|++|+++.+.. +.+++++|.++..+|+ +++|...+++++.+...
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999999997555 8899999999999995 79999999999988875
No 165
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.05 E-value=2e-05 Score=63.26 Aligned_cols=65 Identities=12% Similarity=0.047 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHhccc----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q psy17695 5 PFFKVGILFSNSSFPS----PGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI----VCDWTDYEARMKKLVSI 71 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~----~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 71 (222)
|+++.+++++|.++.. .|++++|+.+|+++++++ ++.+++++|.++.. .+++++|...+++++..
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 107 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL 107 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc
Confidence 6677888888888888 888888888888888775 77888888888888 88888888888777653
No 166
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=7.6e-06 Score=59.09 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=61.2
Q ss_pred CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP------DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~------~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+.++..+|.++...|++++|+.+|++++++.+... .++.++|.++...|++++|...+++++...++
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999966432 48999999999999999999999999998876
No 167
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.04 E-value=6.2e-06 Score=67.43 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALKL-------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l-------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+++++|.+|..+|++++|+.+|++|+++ .+....+++|+|.++..+|++++|...+++++.+.++
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999953 2334568999999999999999999999999998876
No 168
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.02 E-value=8e-06 Score=70.50 Aligned_cols=73 Identities=12% Similarity=0.010 Sum_probs=62.1
Q ss_pred CCCCCCHHHHHHHHHhcc----cCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFP----SPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~----~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.++|+++.++.++|..+. ..|++++|+.+|+++++++|+++.++.++|.++...|++++|...++++++..|+
T Consensus 203 ~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 279 (472)
T 4g1t_A 203 RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279 (472)
T ss_dssp HHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 357999999999886654 5578899999999999999999999999999999999999999999999988776
No 169
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.00 E-value=1.2e-05 Score=62.90 Aligned_cols=68 Identities=16% Similarity=0.016 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHhccc----CCCcHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q psy17695 4 TPFFKVGILFSNSSFPS----PGNIPEAIQSYRTALKLKP--DFPDAYCNLAHCLQI----VCDWTDYEARMKKLVSI 71 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~----~g~~~eA~~~~~~Al~l~P--~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 71 (222)
+++++.++++||.+|.. .+++++|+.+|++|++..| +++.++++||.++.. .+++++|...|+++...
T Consensus 81 ~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 81 EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 35667777777777776 7777777777777777776 347777777777777 66777777777777654
No 170
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.99 E-value=4.4e-06 Score=73.03 Aligned_cols=71 Identities=7% Similarity=-0.036 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL-----KPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l-----~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (222)
|.-+..+.+||.+|..+|+|++|+..+++++++ .|+++ ..++|||.++..+|++++|+..+++++++....
T Consensus 326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 344678999999999999999999999999977 36665 468999999999999999999999999988764
No 171
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.97 E-value=4.4e-05 Score=55.69 Aligned_cols=63 Identities=17% Similarity=0.070 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHhccc----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q psy17695 6 FFKVGILFSNSSFPS----PGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI----VCDWTDYEARMKKLVS 70 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~----~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~~ 70 (222)
+++.++++||.+|.. .+++++|+.+|++|.+. +++.+.++||.++.. ..++++|...|+++.+
T Consensus 55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 456677777777766 66777777777777665 566777777777766 6667777766666654
No 172
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.96 E-value=6.9e-06 Score=72.77 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=55.5
Q ss_pred CCCCCHHHHHHHHHhccc-------CCCcH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17695 3 KTPFFKVGILFSNSSFPS-------PGNIP-------EAIQSYRTALK-LKPDFPDAYCNLAHCLQIVCDWTDYEARMKK 67 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~-------~g~~~-------eA~~~~~~Al~-l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 67 (222)
.+|.++.+|+.+|..+.. .|+++ +|+..|++|++ +.|++..+|.+++.++...|++++|...|++
T Consensus 267 ~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~ 346 (530)
T 2ooe_A 267 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNR 346 (530)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 357788888888888775 78876 78888888886 7888888888888888888888888888887
Q ss_pred HHHHHH
Q psy17695 68 LVSIVA 73 (222)
Q Consensus 68 ~~~~~~ 73 (222)
++...|
T Consensus 347 al~~~p 352 (530)
T 2ooe_A 347 LLAIED 352 (530)
T ss_dssp HHHSSS
T ss_pred HhCccc
Confidence 776543
No 173
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.95 E-value=1.9e-05 Score=66.71 Aligned_cols=68 Identities=9% Similarity=0.171 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP----DAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
.....+..+|..+...|++++|+..|+++++++|+++ .++.++|.++...|++++|...+++++.+..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 117 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK 117 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4467788999999999999999999999999999997 5899999999999999999999999998753
No 174
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.95 E-value=1.2e-05 Score=65.70 Aligned_cols=66 Identities=12% Similarity=0.044 Sum_probs=59.9
Q ss_pred HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHh
Q psy17695 9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPD------FPDAYCNLAHCLQIVCDWTDY-EARMKKLVSIVAE 74 (222)
Q Consensus 9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~------~~~a~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~ 74 (222)
.+++++|.+|..+|++++|+.+|++++++.++ ...+++++|.++..+|++++| ...+++++.+...
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999998644 278999999999999999999 8889999987764
No 175
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.95 E-value=1.3e-05 Score=67.04 Aligned_cols=73 Identities=4% Similarity=-0.112 Sum_probs=67.9
Q ss_pred CCCCCCHHHHHHHHHhc----ccC---CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHH
Q psy17695 2 MKTPFFKVGILFSNSSF----PSP---GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWT--DYEARMKKLVSIV 72 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l----~~~---g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~--~a~~~~~~~~~~~ 72 (222)
..+|.+..+|+..+.++ ..+ +++++++.+++++++.+|++..+|++.+.++..++.|+ ++.+.+.+++...
T Consensus 97 ~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 97 LDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp HHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence 46899999999999999 777 89999999999999999999999999999999999998 9999999998877
Q ss_pred Hh
Q psy17695 73 AE 74 (222)
Q Consensus 73 ~~ 74 (222)
+.
T Consensus 177 ~~ 178 (306)
T 3dra_A 177 LK 178 (306)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 176
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.95 E-value=1.3e-05 Score=55.94 Aligned_cols=50 Identities=6% Similarity=-0.035 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 25 PEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 25 ~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
++|+..|+++++++|+++.+++++|.++...|++++|+..+++++...|+
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 51 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT 51 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 47899999999999999999999999999999999999999999988775
No 177
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.94 E-value=1.1e-05 Score=68.30 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALK-----LKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~-----l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+.++.++|.++..+|++++|+.+|+++++ .+|..+.++.++|.++...|++++|...+++++.+.++
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 56888999999999999999999999999 78888999999999999999999999999999887654
No 178
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.94 E-value=4.9e-05 Score=63.57 Aligned_cols=70 Identities=7% Similarity=0.135 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP----DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.....++..+|.++...|++++|+.+|+++++++|+++ .++.++|.++...|++++|...+++++.+.+.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 79 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 79 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999984 67899999999999999999999999887543
No 179
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.93 E-value=7.5e-06 Score=74.01 Aligned_cols=73 Identities=7% Similarity=-0.153 Sum_probs=67.3
Q ss_pred CCCCCCHHHHHHHHHhcccCC--CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPG--NIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVC-DWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g--~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~ 74 (222)
..+|.+..+|++.+.++..+| ++++|+++++++++++|.+..+|.+.+.++...+ .++++.+++.++++..|.
T Consensus 101 ~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~ 176 (567)
T 1dce_A 101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 176 (567)
T ss_dssp HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred HhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Confidence 468999999999999999999 6699999999999999999999999999999999 899999888888876664
No 180
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.92 E-value=9.9e-06 Score=71.76 Aligned_cols=72 Identities=10% Similarity=0.030 Sum_probs=66.6
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+|.+..+|..++.. .+.|++++|...|+++++..|++...|..++..+...|++++|...|++++...|+
T Consensus 7 ~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 7 EENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 4689999999999985 78999999999999999999999999999999999999999999999999877663
No 181
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.91 E-value=2.2e-05 Score=66.23 Aligned_cols=73 Identities=5% Similarity=-0.178 Sum_probs=67.9
Q ss_pred CCCCCCHHHHHHHHHhcccCCC--cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGN--IPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD-WTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~--~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~ 74 (222)
..+|.+..+|++.+.++..+|+ +++++++++++++++|.+..+|++.+.++...+. ++++.+++.+++...|.
T Consensus 102 ~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~ 177 (331)
T 3dss_A 102 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 177 (331)
T ss_dssp HHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred HhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence 4689999999999999999995 8999999999999999999999999999999998 68999999999987775
No 182
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.91 E-value=1.6e-05 Score=67.19 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=65.8
Q ss_pred CCCCCH----HHHHHHHHhcccCCCcHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17695 3 KTPFFK----VGILFSNSSFPSPGNIPEAIQSYRTALKL------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIV 72 (222)
Q Consensus 3 ~~P~~~----~~~~~lg~~l~~~g~~~eA~~~~~~Al~l------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 72 (222)
.+|+++ .++..+|.++..+|++++|+.+|++++++ +|....++.++|.++...|++++|...+++++.+.
T Consensus 77 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 156 (411)
T 4a1s_A 77 AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA 156 (411)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 356766 68999999999999999999999999999 68888999999999999999999999999999886
Q ss_pred Hh
Q psy17695 73 AE 74 (222)
Q Consensus 73 ~~ 74 (222)
+.
T Consensus 157 ~~ 158 (411)
T 4a1s_A 157 RQ 158 (411)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 183
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.90 E-value=2.4e-05 Score=63.21 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=39.8
Q ss_pred HHHHHHHHhcccCCCcHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 9 VGILFSNSSFPSPGNIPEAIQSYRTALKL------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.++..+|.++...|++++|+..|++++++ .|....++.++|.++...|++++|...+++++.+.++
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 115 (338)
T 3ro2_A 44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 115 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666655 3444555666666666666666666666666655543
No 184
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.90 E-value=1.8e-05 Score=66.83 Aligned_cols=68 Identities=10% Similarity=0.008 Sum_probs=46.5
Q ss_pred CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD-------FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~-------~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+.+++++|.++..+|++++|+.+|++|+++.+. ...++.++|.++..+|++++|...+++++.+.++
T Consensus 142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 216 (383)
T 3ulq_A 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA 216 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777776332 2346777777777777777777777777766554
No 185
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.87 E-value=1.4e-05 Score=65.95 Aligned_cols=66 Identities=8% Similarity=-0.029 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF------PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..++.++|.++..+|++++|+.+|++++++.|++ ..++.++|.++..+|++++|...+++++ +.|.
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 5789999999999999999999999999997654 3578899999999999999999999998 7664
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.87 E-value=2.4e-05 Score=66.07 Aligned_cols=75 Identities=8% Similarity=0.117 Sum_probs=69.3
Q ss_pred CCCCCCCHHHHHHHHHhcccCCC----------cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q psy17695 1 MMKTPFFKVGILFSNSSFPSPGN----------IPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVC--DWTDYEARMKKL 68 (222)
Q Consensus 1 l~~~P~~~~~~~~lg~~l~~~g~----------~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~--~~~~a~~~~~~~ 68 (222)
|..+|++..+|+..+.++..+|+ +++++.+++.+++.+|++..+|++.+.++..++ +|+++.+.+.++
T Consensus 57 L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 136 (331)
T 3dss_A 57 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF 136 (331)
T ss_dssp HTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred HHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence 46899999999999999998887 789999999999999999999999999999999 499999999999
Q ss_pred HHHHHhh
Q psy17695 69 VSIVAEQ 75 (222)
Q Consensus 69 ~~~~~~~ 75 (222)
+...|+.
T Consensus 137 l~~dprN 143 (331)
T 3dss_A 137 LEADERN 143 (331)
T ss_dssp HHHCTTC
T ss_pred HHhCCCC
Confidence 9888763
No 187
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.86 E-value=1.4e-05 Score=67.99 Aligned_cols=73 Identities=7% Similarity=-0.080 Sum_probs=64.2
Q ss_pred CCCCCCHHHHHHHHHhcccCC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHh
Q psy17695 2 MKTPFFKVGILFSNSSFPSPG-NIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIV-C-DWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g-~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~ 74 (222)
.++|++..+|+..+.++..+| ++++++.+++++++.+|++..+|++.+.++... + +++++.+.+.+++...|+
T Consensus 82 ~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk 157 (349)
T 3q7a_A 82 RMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK 157 (349)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT
T ss_pred HhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Confidence 468999999999999999999 599999999999999999999999999999888 7 888888888887766554
No 188
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.86 E-value=7.7e-05 Score=60.19 Aligned_cols=67 Identities=7% Similarity=0.169 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP----DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
...++..|..+...|++++|+.+|+++++++|+++ .++.++|.++...|++++|...+++++.+...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 75 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 75 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Confidence 45788899999999999999999999999999994 67889999999999999999999999887543
No 189
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.86 E-value=3e-05 Score=64.92 Aligned_cols=71 Identities=13% Similarity=0.068 Sum_probs=64.6
Q ss_pred CCCC----HHHHHHHHHhcccCCCcHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 4 TPFF----KVGILFSNSSFPSPGNIPEAIQSYRTALKL------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 4 ~P~~----~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
+|++ +.++..+|.++...|++++|+.+|++++++ .|....++.++|.++...|++++|...+++++.+.+
T Consensus 39 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 118 (406)
T 3sf4_A 39 GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR 118 (406)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5666 468999999999999999999999999998 466688999999999999999999999999999887
Q ss_pred h
Q psy17695 74 E 74 (222)
Q Consensus 74 ~ 74 (222)
+
T Consensus 119 ~ 119 (406)
T 3sf4_A 119 E 119 (406)
T ss_dssp H
T ss_pred h
Confidence 6
No 190
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.82 E-value=3.3e-05 Score=60.28 Aligned_cols=63 Identities=17% Similarity=0.053 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHH
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVC----DWTDYEARMKKLVS 70 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~----~~~~a~~~~~~~~~ 70 (222)
.+++.++++||.++...+++++|+.+|++|++. +++.++++||.++.. + ++++|...|+++..
T Consensus 15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 467888999999998889999999999998765 678888999988887 6 78888888888753
No 191
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.77 E-value=4.1e-05 Score=65.02 Aligned_cols=74 Identities=7% Similarity=-0.036 Sum_probs=68.0
Q ss_pred CCCCCCCHHHHHHHHHhcccCCCcH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------HHHHHHHH
Q psy17695 1 MMKTPFFKVGILFSNSSFPSPGNIP--------EAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD-------WTDYEARM 65 (222)
Q Consensus 1 l~~~P~~~~~~~~lg~~l~~~g~~~--------eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~-------~~~a~~~~ 65 (222)
|..+|.|..+|+..+.++..+|+++ +++++++++++.+|.+..+|++++.++...+. ++++.+++
T Consensus 152 L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~ 231 (349)
T 3q7a_A 152 LLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYI 231 (349)
T ss_dssp TSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 4689999999999999999999998 99999999999999999999999999999886 67888888
Q ss_pred HHHHHHHHh
Q psy17695 66 KKLVSIVAE 74 (222)
Q Consensus 66 ~~~~~~~~~ 74 (222)
.+++...|+
T Consensus 232 ~~aI~~~P~ 240 (349)
T 3q7a_A 232 LKSIHLIPH 240 (349)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHhCCC
Confidence 888887775
No 192
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.72 E-value=7e-05 Score=51.91 Aligned_cols=47 Identities=17% Similarity=0.134 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHC 51 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~ 51 (222)
+..+..+.+||.++.++|++++|+..++++++++|++..++.|+...
T Consensus 43 ~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~ 89 (104)
T 2v5f_A 43 IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYF 89 (104)
T ss_dssp SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHH
Confidence 45688999999999999999999999999999999999999999744
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.71 E-value=1.7e-05 Score=54.33 Aligned_cols=39 Identities=10% Similarity=0.201 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD 40 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~ 40 (222)
..+|+++.+|+++|.++..+|++++|+.+|++++++.|+
T Consensus 35 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 35 ETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 458999999999999999999999999999999999764
No 194
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.64 E-value=8.2e-05 Score=62.78 Aligned_cols=69 Identities=4% Similarity=-0.063 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD-------FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~-------~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+.+++++|.++..+|++++|+.+|++|+++.+. .+.++.++|.++...|++++|...+++++.+.++
T Consensus 139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 214 (378)
T 3q15_A 139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD 214 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888888888888887442 2456788888888888888888888888877654
No 195
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.61 E-value=0.00015 Score=60.59 Aligned_cols=69 Identities=13% Similarity=0.193 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD-----FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~-----~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
|....++.++|.++...|++++|+.++++++++.|. ...++.+++.++...|++++|...+++++.+.+
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 205 (373)
T 1hz4_A 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 205 (373)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 445678899999999999999999999999999876 356889999999999999999999999987754
No 196
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.59 E-value=0.00011 Score=61.46 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=59.1
Q ss_pred HHHHHHHHhcccCCCcHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 9 VGILFSNSSFPSPGNIPEAIQSYRTALKLK--------PDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~--------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.++.++|.++..+|++++|+..|++++++. |....++.++|.++...|++++|...+++++...++
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 457899999999999999999999999985 445678899999999999999999999999987764
No 197
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.49 E-value=8.9e-05 Score=61.12 Aligned_cols=66 Identities=11% Similarity=0.029 Sum_probs=56.5
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD-F-PDAYCNLAHCLQIVCDWTDYEARMKKLV 69 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~-~-~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 69 (222)
.+|++. +++.+|.++.+.|+|++|+.+|+++++..+. . ..+++++|.++..+|++++|+.+|+++.
T Consensus 131 ~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 131 AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAN 198 (282)
T ss_dssp TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 467777 9999999999999999999999988776322 2 4589999999999999999999999876
No 198
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.47 E-value=5.7e-05 Score=51.63 Aligned_cols=41 Identities=12% Similarity=0.077 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP 42 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~ 42 (222)
..+|+++.+++.+|..+.+.|++++|+.+|+++++.+|.++
T Consensus 37 ~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 37 QLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred HHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 56899999999999999999999999999999999999843
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.35 E-value=0.00016 Score=64.22 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=54.1
Q ss_pred HHHHhcccCCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695 13 FSNSSFPSPGNIPEAIQSYRTALKL-----KPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75 (222)
Q Consensus 13 ~lg~~l~~~g~~~eA~~~~~~Al~l-----~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (222)
..+..+..+|++++|+..|++++++ .|+++ .++.|||.+|..+|+|++|+..+++++.+....
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~ 384 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL 384 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999999999987 35554 578999999999999999999999999887764
No 200
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.29 E-value=0.001 Score=58.07 Aligned_cols=65 Identities=12% Similarity=-0.030 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHhccc----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q psy17695 6 FFKVGILFSNSSFPS----PGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI----VCDWTDYEARMKKLVSIV 72 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~----~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 72 (222)
+++.++++||.+|.. .+++++|+.+|++|++. +++.++++||.++.. .+++++|...|++++...
T Consensus 361 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 361 GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 578888999999888 88999999999998875 468889999999888 788999999999888877
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.28 E-value=0.0011 Score=48.06 Aligned_cols=61 Identities=15% Similarity=-0.011 Sum_probs=54.9
Q ss_pred CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q psy17695 7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI----VCDWTDYEARMKKLVSI 71 (222)
Q Consensus 7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 71 (222)
++.+. ||.+|...+..++|+.+|++|.+. +++.+.++||.++.. ..++++|...|+++.+.
T Consensus 26 ~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 26 EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL 90 (138)
T ss_dssp CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence 44555 999999999999999999999997 789999999999998 89999999999998753
No 202
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.26 E-value=0.00053 Score=67.46 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
..+.+.+|+++|.++.+.|+++||+++|.+| +++.++.+.+.++...|+|+++.+.+..+++..+
T Consensus 1101 rvn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~ 1165 (1630)
T 1xi4_A 1101 RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR 1165 (1630)
T ss_pred hcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Confidence 3577999999999999999999999999886 8999999999999999999999999988776553
No 203
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.24 E-value=0.00034 Score=52.27 Aligned_cols=47 Identities=11% Similarity=-0.055 Sum_probs=41.8
Q ss_pred C-CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17695 5 P-FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHC 51 (222)
Q Consensus 5 P-~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~ 51 (222)
| +..+++++||..+.++|+|++|..+++++|+++|++.++....-.+
T Consensus 67 p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 67 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 5 5689999999999999999999999999999999999987665433
No 204
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.21 E-value=0.001 Score=54.96 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=61.1
Q ss_pred CCCCCHHHHHHHHHhccc-----CCC------cHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHH
Q psy17695 3 KTPFFKVGILFSNSSFPS-----PGN------IPEAIQSYRTALKLKPD--FPDAYCNLAHCLQIV-----CDWTDYEAR 64 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~-----~g~------~~eA~~~~~~Al~l~P~--~~~a~~~l~~~~~~~-----~~~~~a~~~ 64 (222)
.+|+++++++..|.+... .|. ..+|...+++|++++|+ +..+|..+|.+|... |+.++|+++
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 467888888887776632 233 57899999999999999 667999999999995 999999999
Q ss_pred HHHHHHHHHh
Q psy17695 65 MKKLVSIVAE 74 (222)
Q Consensus 65 ~~~~~~~~~~ 74 (222)
|++++++.|+
T Consensus 227 ferAL~LnP~ 236 (301)
T 3u64_A 227 FEHLTRYCSA 236 (301)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHhCCC
Confidence 9999999996
No 205
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.15 E-value=0.0012 Score=55.12 Aligned_cols=69 Identities=1% Similarity=0.004 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKP--DFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P--~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
+....++..+|.++...|++++|+..+.+++..+| ++.+++..++.++..+|+.+.|.+.++++.+..|
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~ 167 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE 167 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 56677788999999999999999999999999997 8999999999999999999999999998887776
No 206
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.14 E-value=0.00039 Score=60.71 Aligned_cols=61 Identities=7% Similarity=-0.015 Sum_probs=52.3
Q ss_pred HHhcccCCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695 15 NSSFPSPGNIPEAIQSYRTALKL-----KPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75 (222)
Q Consensus 15 g~~l~~~g~~~eA~~~~~~Al~l-----~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (222)
+......|++++|+..|++++++ .|+++ .++.|||.+|..+|+|++|+..+++++.+....
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~ 373 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKH 373 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 33445689999999999999986 46665 568999999999999999999999999988764
No 207
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.11 E-value=0.00081 Score=58.60 Aligned_cols=63 Identities=10% Similarity=0.042 Sum_probs=43.0
Q ss_pred CHHHHHHHHHhcccCC---CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q psy17695 7 FKVGILFSNSSFPSPG---NIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIV----CDWTDYEARMKKLV 69 (222)
Q Consensus 7 ~~~~~~~lg~~l~~~g---~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~----~~~~~a~~~~~~~~ 69 (222)
++.++++||.+|...| ++++|+.+|+++.+.+|..+..++++|.++... +++++|...|+++.
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 3446777777777777 777777777777777777777777777766544 56666666666654
No 208
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.10 E-value=0.002 Score=56.19 Aligned_cols=62 Identities=15% Similarity=0.039 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHhccc----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q psy17695 6 FFKVGILFSNSSFPS----PGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI----VCDWTDYEARMKKLV 69 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~----~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~ 69 (222)
+++.+++.||.+|.. .+++++|+.+|+++++. +++.++++||.++.. .+++++|...|+++.
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 106 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA 106 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 445555555555554 45555555555555543 345555555555554 455555555554443
No 209
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0016 Score=55.20 Aligned_cols=70 Identities=7% Similarity=-0.010 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+..+..+.+||.++...|++++|+..+++++.. +|....++.+++.++..+++|++|...+++++...+.
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 445678899999999999999999999999987 4556789999999999999999999999999987764
No 210
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.99 E-value=0.0017 Score=56.58 Aligned_cols=63 Identities=10% Similarity=0.046 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHhcccC----CCcHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHH
Q psy17695 4 TPFFKVGILFSNSSFPSP----GNIPEAIQSYRTALKLKPDFPDAYCNLAHC-L--QIVCDWTDYEARMKKLV 69 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~----g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~-~--~~~~~~~~a~~~~~~~~ 69 (222)
.|..+..+++||.+|... +++++|+.+|+++. |+++.++++||.+ + ...+++++|...|+++.
T Consensus 209 g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 209 GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 344555556666666544 56666666666665 6666666666665 3 34556666666665554
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.80 E-value=0.00088 Score=58.36 Aligned_cols=60 Identities=0% Similarity=-0.234 Sum_probs=52.0
Q ss_pred HhcccCCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695 16 SSFPSPGNIPEAIQSYRTALKL-----KPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75 (222)
Q Consensus 16 ~~l~~~g~~~eA~~~~~~Al~l-----~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (222)
.-+..+|++++|+..|++++++ .|+++ .++.|++.++..+|+|++|+..+++++.+....
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~ 362 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF 362 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH
Confidence 4456789999999999999976 46665 578999999999999999999999999988764
No 212
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0028 Score=53.69 Aligned_cols=67 Identities=10% Similarity=0.017 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP-----------------DAYCNLAHCLQIVCDWTDYEARMKKLVS 70 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~-----------------~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 70 (222)
|.+...-|..+.+.|++++|++.|.++++..|+.. .++.++|.++...|+|++|.+.+.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34566778889999999999999999999998764 3689999999999999999999998887
Q ss_pred HHHh
Q psy17695 71 IVAE 74 (222)
Q Consensus 71 ~~~~ 74 (222)
..+.
T Consensus 84 ~~~~ 87 (434)
T 4b4t_Q 84 YMMQ 87 (434)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6543
No 213
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.49 E-value=0.0074 Score=43.46 Aligned_cols=71 Identities=10% Similarity=-0.061 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHhcccCCCcHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPE---AIQSYRTALKLK-P-DFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~e---A~~~~~~Al~l~-P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
++....+-+++|.+|....+..+ ++..++..++-+ | ..-+.++.|+..+.++|+++.|..+++.+++..|+
T Consensus 31 ~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 31 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 45778999999999999888777 999999999987 6 57789999999999999999999999999988885
No 214
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.29 E-value=0.0026 Score=53.04 Aligned_cols=56 Identities=21% Similarity=0.027 Sum_probs=34.1
Q ss_pred hcccCCCcHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 17 SFPSPGNIPEAIQSYRTALKL----------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 17 ~l~~~g~~~eA~~~~~~Al~l----------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
++..+|++++|...+++++++ +|++++++.|+..+...+|+ ++.+.++++....|+
T Consensus 220 ~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 220 LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 566666666666666665555 36666666666666666665 555555555554443
No 215
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.28 E-value=0.01 Score=42.74 Aligned_cols=47 Identities=11% Similarity=-0.079 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17695 6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~ 52 (222)
..-+.++.||..+.++|+|++|..+++..|+++|++.++....-.+.
T Consensus 72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999977665543
No 216
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.21 E-value=0.0029 Score=55.25 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=25.9
Q ss_pred HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17695 9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKL 68 (222)
Q Consensus 9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~ 68 (222)
.+|.++|..+...|+|++|+.+|.++ ..+..++.++..+|++++|.++++++
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 46777777777777777777777755 35666677777777777777666666
No 217
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.19 E-value=0.0088 Score=55.07 Aligned_cols=71 Identities=7% Similarity=-0.009 Sum_probs=66.5
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAI-QSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~-~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
..|.++..|+..+..+...|+.++|. ..|++|+...|.+...|..++......|+++.|...|++++...+
T Consensus 338 ~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~ 409 (679)
T 4e6h_A 338 HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH 409 (679)
T ss_dssp HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999997 999999999999999999999999999999999999999998764
No 218
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.13 E-value=0.017 Score=43.49 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHhC---CC----------------------CHHHHHHHHHHHHHcCCHHHHH
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLK---PD----------------------FPDAYCNLAHCLQIVCDWTDYE 62 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~---P~----------------------~~~a~~~l~~~~~~~~~~~~a~ 62 (222)
.++...+|.++...|+|..|+..|++||++. |. +.+..+.++.|+.+++++++|+
T Consensus 63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai 142 (167)
T 3ffl_A 63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI 142 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence 4578899999999999999999999997652 11 1378899999999999999998
Q ss_pred HHH
Q psy17695 63 ARM 65 (222)
Q Consensus 63 ~~~ 65 (222)
..+
T Consensus 143 ~~L 145 (167)
T 3ffl_A 143 AIL 145 (167)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 219
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.07 E-value=0.028 Score=48.10 Aligned_cols=68 Identities=10% Similarity=0.064 Sum_probs=61.8
Q ss_pred HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q psy17695 9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQL 76 (222)
Q Consensus 9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l 76 (222)
.+...++.++...|++++|+..++++++.+|-+..++..+..++...|+..+|.+.|+++.+.+.+.|
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eL 239 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL 239 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 34556778888999999999999999999999999999999999999999999999999998877653
No 220
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.88 E-value=0.025 Score=45.93 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=53.7
Q ss_pred hcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 17 SFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 17 ~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
-+.+.|++++|++.....++-+|.++..+..|...+.-.|+|+.|+..++.+.++.|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 4678899999999999999999999999999999999999999999988888887775
No 221
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=95.56 E-value=0.023 Score=49.59 Aligned_cols=49 Identities=10% Similarity=0.027 Sum_probs=38.0
Q ss_pred HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17695 9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYE 62 (222)
Q Consensus 9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 62 (222)
..|..||.+|..+|++++|+++|++| +++.+|...+.++...|+|+.|.
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHH
Confidence 35789999999999999999999999 46777766666666665555554
No 222
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.33 E-value=0.047 Score=40.05 Aligned_cols=70 Identities=4% Similarity=-0.105 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHhcccCCC---cHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 5 PFFKVGILFSNSSFPSPGN---IPEAIQSYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~---~~eA~~~~~~Al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.-.+.+-++++.+|....+ ..+++..++..++-+|. .-+.++.|+..+.++|++++|..+.+.+++..|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4467888888888887665 45788888888888884 5678888888889999999999888888887664
No 223
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.32 E-value=0.029 Score=40.61 Aligned_cols=68 Identities=4% Similarity=-0.097 Sum_probs=52.6
Q ss_pred CHHHHHHHHHhcccCCC---cHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 7 FKVGILFSNSSFPSPGN---IPEAIQSYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 7 ~~~~~~~lg~~l~~~g~---~~eA~~~~~~Al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.+.+-++++.+|....+ ..+++..++..++.+|. .-+.++.|+..+.++|++++|..+.+.+++..|+
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 45677788877776654 44688888888888884 4678888888888888888888888888877665
No 224
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.14 E-value=0.036 Score=51.02 Aligned_cols=71 Identities=8% Similarity=-0.056 Sum_probs=64.3
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD---WTDYEARMKKLVSIV 72 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~---~~~a~~~~~~~~~~~ 72 (222)
..+|.+...|..+...+...+.++.+...|+++++..|.....|...+......++ .+.+...|++++...
T Consensus 60 ~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~ 133 (679)
T 4e6h_A 60 EEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE 133 (679)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSS
T ss_pred HHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhc
Confidence 45899999999999999999999999999999999999999999999999999888 999999999888666
No 225
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.40 E-value=0.029 Score=47.82 Aligned_cols=73 Identities=7% Similarity=-0.078 Sum_probs=54.3
Q ss_pred CCCCCCHHHHHHHHHhcccC---C-----CcHHHHHHHHH--HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695 2 MKTPFFKVGILFSNSSFPSP---G-----NIPEAIQSYRT--ALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI 71 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~---g-----~~~eA~~~~~~--Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 71 (222)
.++|+++.+|..++.++... + ..+.....++. ++.++|.++.++.-++..+...|++++|...+++++.+
T Consensus 227 ~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L 306 (372)
T 3ly7_A 227 QSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL 306 (372)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 46899999999988888521 1 11111122332 33667999999999999999999999999999999988
Q ss_pred HHh
Q psy17695 72 VAE 74 (222)
Q Consensus 72 ~~~ 74 (222)
.+.
T Consensus 307 n~s 309 (372)
T 3ly7_A 307 EMS 309 (372)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 226
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.28 E-value=0.083 Score=52.39 Aligned_cols=56 Identities=14% Similarity=0.045 Sum_probs=46.3
Q ss_pred CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695 7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS 70 (222)
Q Consensus 7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 70 (222)
+...+.++|..+.+.|++++|+.+|.+| ..|..++.++.++|++++|.++++++..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 4456778999999999999999999986 4788888999899999998888877643
No 227
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.14 E-value=0.12 Score=48.05 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=49.7
Q ss_pred HHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17695 10 GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARM 65 (222)
Q Consensus 10 ~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 65 (222)
.+..-+..+...|+++-|+++-++|+.+.|+.-..|+.|+.+|..+++|+.|.-.+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 44455677788999999999999999999999999999999999999999988533
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.12 E-value=0.17 Score=37.03 Aligned_cols=46 Identities=7% Similarity=-0.081 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17695 6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHC 51 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~ 51 (222)
+.-+.++.|+..+.++|+|++|..+.+..|+++|++.++....-.+
T Consensus 75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3567889999999999999999999999999999999887665443
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.00 E-value=0.15 Score=36.91 Aligned_cols=47 Identities=6% Similarity=-0.070 Sum_probs=41.4
Q ss_pred CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17695 7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53 (222)
Q Consensus 7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~ 53 (222)
.-+.++.||..+.++|+|++|..+.++.|+++|++.+|......+-.
T Consensus 77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~ 123 (134)
T 3o48_A 77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVED 123 (134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999877655533
No 230
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.00 E-value=0.14 Score=45.24 Aligned_cols=60 Identities=17% Similarity=0.077 Sum_probs=54.2
Q ss_pred HHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695 10 GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV 69 (222)
Q Consensus 10 ~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 69 (222)
.+..||.+.+-...++.|..+|.+|+.+.|++...++.||.+....++.-++.-.|-+++
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 556799999999999999999999999999999999999999999999888887776655
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.88 E-value=0.11 Score=38.56 Aligned_cols=70 Identities=11% Similarity=-0.007 Sum_probs=55.9
Q ss_pred CCCCCCCHHHHHHHHHhcccCCCc------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17695 1 MMKTPFFKVGILFSNSSFPSPGNI------PEAIQSYRTALKLKPDF--------PDAYCNLAHCLQIVCDWTDYEARMK 66 (222)
Q Consensus 1 l~~~P~~~~~~~~lg~~l~~~g~~------~eA~~~~~~Al~l~P~~--------~~a~~~l~~~~~~~~~~~~a~~~~~ 66 (222)
++.+|++++.|......+.+.|+. +.-++.|++|+..-|-. ...|.+.+.. ...+|.++|.+.|+
T Consensus 6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ 84 (161)
T ss_dssp ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 467899999999999999999999 99999999999987653 3456666644 56689999999999
Q ss_pred HHHHH
Q psy17695 67 KLVSI 71 (222)
Q Consensus 67 ~~~~~ 71 (222)
.++.+
T Consensus 85 ~a~~~ 89 (161)
T 4h7y_A 85 MARAN 89 (161)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
No 232
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.77 E-value=0.4 Score=36.01 Aligned_cols=64 Identities=9% Similarity=0.030 Sum_probs=52.3
Q ss_pred HHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 11 ILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP---------DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 11 ~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~---------~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+..-...+.+.|.|+.|+.....++.+..+++ ++++.+|.++...++|..|+..|++++.....
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~ 95 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA 95 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 34445667889999999999999888753333 47899999999999999999999999877653
No 233
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=88.91 E-value=1.6 Score=38.38 Aligned_cols=62 Identities=8% Similarity=-0.079 Sum_probs=39.2
Q ss_pred CHHHHHHHHHhcccCCCcHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695 7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV 69 (222)
Q Consensus 7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 69 (222)
+...++.+-..|.+.|++++|...|++..+. .| +..++..+...+...|++++|.+.+++..
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4556666666677777777777777666554 34 35566666666666677766666665544
No 234
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.48 E-value=1.7 Score=39.57 Aligned_cols=62 Identities=10% Similarity=-0.066 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTAL--------KLKPDFPDAYCNLAHCLQIVCDWTDYEARM 65 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al--------~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 65 (222)
..+++..|..+|....+.|+++.|+.+|.++- ....++.+.+..++......|+++.|..+|
T Consensus 677 ~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~ 746 (814)
T 3mkq_A 677 DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAY 746 (814)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 45678899999999999999999999999862 223556666666666666666666665444
No 235
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=87.80 E-value=2.8 Score=36.76 Aligned_cols=63 Identities=10% Similarity=-0.019 Sum_probs=55.4
Q ss_pred CHHHHHHHHHhcccCCCcHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695 7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS 70 (222)
Q Consensus 7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 70 (222)
+...|+.+=..|.+.|++++|...|++..+. .|+ ...+..|..++...|++++|.+.+++..+
T Consensus 139 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 139 RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 5678888889999999999999999998876 454 67889999999999999999999888765
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.45 E-value=1.3 Score=32.71 Aligned_cols=65 Identities=11% Similarity=-0.099 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
...|...+.. ...++.++|.+.|+.++++.-.++..|...+..-..+|+...|...+.+++...|
T Consensus 61 I~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 61 ARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 3456666644 5669999999999999999999999999999999999999999988888886555
No 237
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.42 E-value=1.4 Score=37.95 Aligned_cols=66 Identities=11% Similarity=0.054 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD---FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~---~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
..++..+|..+.+.|++++|.++|.++...-.. -.+.+.+...+....++|..+...+.++.....
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~ 199 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE 199 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 346788999999999999999999999876432 357788888888999999999999999876654
No 238
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=83.34 E-value=2.8 Score=36.68 Aligned_cols=48 Identities=6% Similarity=-0.064 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 26 EAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 26 eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.....|++++...|.++..|.+.+..+...|+.++|...|++++.. |.
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~ 244 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD 244 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC
Confidence 3556777777777777777777777777777777777777777766 64
No 239
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.81 E-value=2.9 Score=33.85 Aligned_cols=44 Identities=14% Similarity=0.020 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHH
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAY 45 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~ 45 (222)
+.+|.|+..-..|-.+|.-.|+|+.|.+-++.+.+++|+....-
T Consensus 25 R~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 25 KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 57899999999999999999999999999999999999987654
No 240
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=82.29 E-value=1.6 Score=29.27 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=14.7
Q ss_pred HHHHHHHHhcccCCCcHHHHHHHHHHH
Q psy17695 9 VGILFSNSSFPSPGNIPEAIQSYRTAL 35 (222)
Q Consensus 9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al 35 (222)
..+...+..+...|+|++||.|.++|.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 344445555555666666655555544
No 241
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=81.50 E-value=3.5 Score=31.11 Aligned_cols=58 Identities=10% Similarity=-0.126 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695 6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI 71 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 71 (222)
.+++.-+.++ .+.|+++.|.+..+.. ++...|-.||......|+.+-|+.+|+++..+
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~ 63 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF 63 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH
Confidence 3455555554 4689999999887654 78999999999999999999999999877543
No 242
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=81.04 E-value=2.3 Score=37.23 Aligned_cols=47 Identities=9% Similarity=-0.033 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17695 4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHC 51 (222)
Q Consensus 4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~ 51 (222)
.|..+..|...+..+...|+.++|...|++|++. |.+...+...+..
T Consensus 209 ~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~ 255 (493)
T 2uy1_A 209 FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLV 255 (493)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhh
Confidence 4888999999999999999999999999999999 9998776655443
No 243
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=78.67 E-value=3.8 Score=26.16 Aligned_cols=34 Identities=6% Similarity=0.117 Sum_probs=29.0
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHH
Q psy17695 12 LFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAY 45 (222)
Q Consensus 12 ~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~ 45 (222)
..+|..+...|++++|+.+|-+|++.-|+-.+.+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 4688899999999999999999999988866554
No 244
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=75.69 E-value=14 Score=27.39 Aligned_cols=64 Identities=6% Similarity=-0.057 Sum_probs=49.0
Q ss_pred HHHHHHhcccCCCcHHHHHHHHHHHHhCCCC--H----HHHHH-H--HHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 11 ILFSNSSFPSPGNIPEAIQSYRTALKLKPDF--P----DAYCN-L--AHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 11 ~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~--~----~a~~~-l--~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
-+.-|..+...|+|=+|-+.++.+++-.++. . ..+.. + |......|++..|...+++++..+..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~ 107 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRG 107 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 4567788888899999999999999987665 2 22233 2 22345679999999999999987764
No 245
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=72.39 E-value=4.2 Score=35.80 Aligned_cols=52 Identities=23% Similarity=0.139 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI 54 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~ 54 (222)
+.|++...++.||.+....|+.-+|+-+|-|++....-++.+..|+...+..
T Consensus 181 ~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 181 LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred hCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 5799999999999999999999999999999999988899999999888764
No 246
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=68.29 E-value=20 Score=26.23 Aligned_cols=55 Identities=16% Similarity=0.062 Sum_probs=45.0
Q ss_pred HhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695 16 SSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS 70 (222)
Q Consensus 16 ~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 70 (222)
..+..+|+-++=.+.+...+.-++-++..+.-++.+|.+.|+-.++.+...++.+
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 5667888888888888887777777899999999999999999999988777653
No 247
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=65.78 E-value=7.3 Score=25.38 Aligned_cols=22 Identities=14% Similarity=0.145 Sum_probs=14.5
Q ss_pred HHcCCHHHHHHHHHHHHHHHHh
Q psy17695 53 QIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
-..|++++|..+|.+++..+-.
T Consensus 30 D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHH
Confidence 4566777777777776666554
No 248
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=64.34 E-value=19 Score=34.85 Aligned_cols=58 Identities=9% Similarity=-0.079 Sum_probs=32.2
Q ss_pred HHHHHHHhcccCCCcHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17695 10 GILFSNSSFPSPGNIPEAIQSYRTALK-----LKPDFPDAYCNLAHCLQIVCDWTDYEARMKKL 68 (222)
Q Consensus 10 ~~~~lg~~l~~~g~~~eA~~~~~~Al~-----l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~ 68 (222)
.++.|=..|.+.|+.++|...|+..-+ ..|+ ...|+.|...+.+.|++++|.+.|++.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM 191 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-LDMYNAVMLGWARQGAFKELVYVLFMV 191 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 355555566666666666666644321 2343 555566666666666666666555544
No 249
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=64.13 E-value=24 Score=34.20 Aligned_cols=63 Identities=11% Similarity=0.041 Sum_probs=52.9
Q ss_pred CHHHHHHHHHhcccCCCcHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q psy17695 7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKL--KPDFPDAYCNLAHCLQIVCDW-TDYEARMKKLVS 70 (222)
Q Consensus 7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~~l~~~~~~~~~~-~~a~~~~~~~~~ 70 (222)
+...|+.|-..|.+.|++++|...|++..+. .|+ ..+++.+..++.+.|+. ++|.+.+++...
T Consensus 164 dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD-vvTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD-LLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 6778999999999999999999999998875 465 77888888899999884 677777777654
No 250
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=63.94 E-value=6 Score=35.85 Aligned_cols=32 Identities=3% Similarity=-0.116 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695 38 KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV 69 (222)
Q Consensus 38 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 69 (222)
..++...|-++|..+.+.++++.|+.+|.++.
T Consensus 677 ~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 677 DESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 45678999999999999999999999998864
No 251
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.62 E-value=33 Score=26.27 Aligned_cols=69 Identities=10% Similarity=0.084 Sum_probs=54.2
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLK--PDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI 71 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 71 (222)
+.||.....|...+..+ ..+...++.+.|....... -..+..+...+..+-..|+|.+|.+.|+..++.
T Consensus 74 kND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 45777788888888776 3445778899888887765 456777888888899999999999999887753
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=62.34 E-value=24 Score=32.77 Aligned_cols=50 Identities=10% Similarity=-0.061 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17695 6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVC 56 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~ 56 (222)
..+.=|--||.+-.+++.++||+++|++++... =++.++..|..+|.+.+
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R-Fs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVAR-FDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHSCC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcC
Confidence 356679999999999999999999999999865 56889999999987755
No 253
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=62.02 E-value=9.4 Score=24.78 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=14.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHHh
Q psy17695 53 QIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
-..|++++|..+|.+++..+-.
T Consensus 22 D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHH
Confidence 4567777777777777666554
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=59.95 E-value=20 Score=30.41 Aligned_cols=61 Identities=7% Similarity=-0.031 Sum_probs=47.1
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17695 12 LFSNSSFPSPGNIPEAIQSYRTALKL----KPD--FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIV 72 (222)
Q Consensus 12 ~~lg~~l~~~g~~~eA~~~~~~Al~l----~P~--~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 72 (222)
..||.+|.+.|+|.+|...+.+.++- +.. -.+.+..-..++..++++..+.+.+.++....
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 37899999999999999999888874 211 12445555666788999999999998887654
No 255
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=58.39 E-value=17 Score=27.56 Aligned_cols=42 Identities=14% Similarity=-0.003 Sum_probs=34.6
Q ss_pred CCCCCHHHH-HHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHH
Q psy17695 3 KTPFFKVGI-LFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDA 44 (222)
Q Consensus 3 ~~P~~~~~~-~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a 44 (222)
.+|.+-+.. +.+|.++.+.|+.+||+..|.+.....|-.+..
T Consensus 108 vd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 108 VDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred eccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 467776655 457899999999999999999999999886655
No 256
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=58.26 E-value=12 Score=24.51 Aligned_cols=19 Identities=0% Similarity=0.009 Sum_probs=9.2
Q ss_pred HcCCHHHHHHHHHHHHHHH
Q psy17695 54 IVCDWTDYEARMKKLVSIV 72 (222)
Q Consensus 54 ~~~~~~~a~~~~~~~~~~~ 72 (222)
..|++++|..+|..++..+
T Consensus 28 ~~g~y~eAl~lY~~Aie~l 46 (86)
T 4a5x_A 28 SESRYPQALVCYQEGIDLL 46 (86)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHH
Confidence 4444555555555544443
No 257
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=57.71 E-value=20 Score=27.37 Aligned_cols=35 Identities=6% Similarity=-0.118 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP 42 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~ 42 (222)
....+.+|..+...++|.+|.+++..|++.-|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 45788999999999999999999999999988654
No 258
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=56.70 E-value=7.3 Score=26.19 Aligned_cols=30 Identities=7% Similarity=0.138 Sum_probs=21.1
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHhCCCC
Q psy17695 12 LFSNSSFPSPGNIPEAIQSYRTALKLKPDF 41 (222)
Q Consensus 12 ~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~ 41 (222)
..+|..+...|++++|+.+|-+|+..-|+-
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 356777777777777777777777776653
No 259
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=56.29 E-value=31 Score=23.03 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhh
Q psy17695 43 DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLD 77 (222)
Q Consensus 43 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~ 77 (222)
..+...+..+...|.|++|+++.+++...+.+.+.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmk 50 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMK 50 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 34555666778899999999999999999887654
No 260
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=55.92 E-value=13 Score=24.61 Aligned_cols=21 Identities=0% Similarity=0.026 Sum_probs=11.7
Q ss_pred HcCCHHHHHHHHHHHHHHHHh
Q psy17695 54 IVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 54 ~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..+++++|..+|..++..+-.
T Consensus 27 ~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 27 AESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHH
Confidence 445566666666655555443
No 261
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=55.34 E-value=14 Score=23.88 Aligned_cols=21 Identities=0% Similarity=-0.065 Sum_probs=12.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHh
Q psy17695 54 IVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 54 ~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..|++++|...|..++..+-.
T Consensus 25 ~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHH
Confidence 445666666666666655443
No 262
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=54.11 E-value=8 Score=24.84 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=27.2
Q ss_pred HHHHHhhhcceeecCCCCChHHHHHHHHhCCCcEE
Q psy17695 160 QAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHIL 194 (222)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~iDIL 194 (222)
...|+...+.--.-..+|| +++++.+.+.||+|.
T Consensus 22 k~~Ik~lI~~Ed~~kPlSD-~~I~~~L~~~Gi~Ia 55 (76)
T 2ahq_A 22 MKLIKEIVENEDKRKPYSD-QEIANILKEKGFKVA 55 (76)
T ss_dssp HHHHHHHGGGCCSSSCCCH-HHHHHHHTTTSSCCC
T ss_pred HHHHHHHHHhcCCCCCCCH-HHHHHHHHHcCCCcc
Confidence 5667777766655667998 899999999999984
No 263
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=53.34 E-value=14 Score=26.81 Aligned_cols=58 Identities=5% Similarity=-0.026 Sum_probs=36.5
Q ss_pred ccccceeeEeeccccccCCCchhhHHHHHHhhhcceeecCCCCChHHHHHHHHhCCCcEEEeC
Q psy17695 135 AQRLESLYKVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHILVNM 197 (222)
Q Consensus 135 ~~rLRIGYvS~~d~~f~~H~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~iDILvDL 197 (222)
.++||||... . +..+-+..++.+-.+..=+.=+++...+. .++.+.+.+.++||.|-.
T Consensus 4 ~g~l~Ig~~~--~--~~~~~l~~~l~~f~~~~P~i~i~l~~~~~-~~l~~~l~~g~~Dl~i~~ 61 (209)
T 2ql3_A 4 AGPIAVGCYP--A--LGPTILPSMLYAFTAEYPRASVEFREDTQ-NRLRTQLEGGELDVAIVY 61 (209)
T ss_dssp CEEEEEEECG--G--GTTTTHHHHHHHHHHHCTTEEEEEEECCH-HHHHHHHHTTSCSEEEEE
T ss_pred ceeEEEeech--h--hhhhhHHHHHHHHHHHCCCceEEEEECcH-HHHHHHHHcCCccEEEEe
Confidence 4689999765 3 44444555553322222233345555564 689999999999998853
No 264
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=53.34 E-value=59 Score=27.55 Aligned_cols=68 Identities=10% Similarity=0.025 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHhccc--CCCcHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 6 FFKVGILFSNSSFPS--PGNIPEAIQSYRTALKL-----KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~--~g~~~eA~~~~~~Al~l-----~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
..|.++.|||.+=.. ......++..|.+|+.. +-.+..-+..+|.++.+.+++.+|.+.+.++-..+.
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~ 327 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAG 327 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHH
Confidence 467888888876542 23344488899999876 456777888999999999999999887777766544
No 265
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=50.54 E-value=66 Score=24.39 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHH--Hh---------------CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTAL--KL---------------KPDFPDA-YCNLAHCLQIVCDWTDYEARMKKLV 69 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al--~l---------------~P~~~~a-~~~l~~~~~~~~~~~~a~~~~~~~~ 69 (222)
..+.+--..++.++.++..|+.+++..+ +. +|.+-+. ...+|.++...|+-+||+..+....
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 4455666789999999999999999999 33 2455554 4556788889999999998886554
Q ss_pred H
Q psy17695 70 S 70 (222)
Q Consensus 70 ~ 70 (222)
.
T Consensus 142 ~ 142 (242)
T 3kae_A 142 G 142 (242)
T ss_dssp H
T ss_pred C
Confidence 3
No 266
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=50.37 E-value=30 Score=29.97 Aligned_cols=64 Identities=3% Similarity=-0.114 Sum_probs=49.9
Q ss_pred HHHHHHhcccCCCcHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHh
Q psy17695 11 ILFSNSSFPSPGNIPEAIQSYRTALKLKP----------DFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI-VAE 74 (222)
Q Consensus 11 ~~~lg~~l~~~g~~~eA~~~~~~Al~l~P----------~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~ 74 (222)
.++|-.+|.++|+..-+...++..-...+ +.+..++.+|..+...++|.+|.+.+.+|.+. .|.
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 45566788999999999888865433332 22467899999999999999999999999888 663
No 267
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=49.97 E-value=34 Score=25.59 Aligned_cols=30 Identities=17% Similarity=-0.083 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHhcccCCCcHHHHHHHHHHH
Q psy17695 6 FFKVGILFSNSSFPSPGNIPEAIQSYRTAL 35 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al 35 (222)
++...|..||..-...|+++-|+.||.++-
T Consensus 32 ~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 32 NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 467789999999999999999999999864
No 268
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=48.16 E-value=15 Score=25.62 Aligned_cols=22 Identities=5% Similarity=0.022 Sum_probs=15.2
Q ss_pred HHcCCHHHHHHHHHHHHHHHHh
Q psy17695 53 QIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
-..+++++|..+|..++.++-.
T Consensus 29 D~ag~y~eAl~lY~~Aie~l~~ 50 (117)
T 2cpt_A 29 DKAGNYEEALQLYQHAVQYFLH 50 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHH
Confidence 3557777777777777776654
No 269
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=48.12 E-value=75 Score=27.47 Aligned_cols=68 Identities=7% Similarity=0.026 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHhcccC--CCcHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 6 FFKVGILFSNSSFPSP--GNIPEAIQSYRTALKL-----KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~~--g~~~eA~~~~~~Al~l-----~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
..|.++.|||.+=... ..-..++..|.+|+.. +-.+..-+..+|.++.+.+++.+|.+.+.++-..+.
T Consensus 275 rYPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~ 349 (550)
T 3u84_A 275 RYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQ 349 (550)
T ss_dssp TCHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred hCchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHH
Confidence 4677888888765422 2223578888888876 456677788899999999999998877766655443
No 270
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=47.66 E-value=29 Score=31.47 Aligned_cols=50 Identities=14% Similarity=0.013 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD 57 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~ 57 (222)
.+.....|......|+|.-|.+....++..+|++.++...++.++.++|.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 35566778888899999999999999999999999999999999988764
No 271
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=45.34 E-value=89 Score=26.93 Aligned_cols=69 Identities=7% Similarity=0.054 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHhcc--cCCCcHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 6 FFKVGILFSNSSFP--SPGNIPEAIQSYRTALKL-----KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 6 ~~~~~~~~lg~~l~--~~g~~~eA~~~~~~Al~l-----~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
..|.++.+||.+-. .......++..|++|+.. +-.+..-+..+|..+...+++.+|..++.++-..+..
T Consensus 260 ~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~ 335 (489)
T 4gq4_A 260 RYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQD 335 (489)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred hcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhh
Confidence 46788888888754 233344578899999985 4667778889999999999999999888887766553
No 272
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=45.24 E-value=17 Score=27.12 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=34.7
Q ss_pred hccccceeeEeeccccccCCCchhhHHHHHHhhhcceeecCCCCChHHHHHHHHhCCCcEEEe
Q psy17695 134 YAQRLESLYKVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHILVN 196 (222)
Q Consensus 134 ~~~rLRIGYvS~~d~~f~~H~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~iDILvD 196 (222)
..++||||... . +..+-+..++.+-.+..=+.=+++...+. .++.+.+.+.++||.|-
T Consensus 28 ~~g~l~Ig~~~--~--~~~~~l~~~l~~f~~~~P~v~l~~~~~~~-~~~~~~l~~g~~Dl~i~ 85 (238)
T 2hxr_A 28 TRGSLRIAVTP--T--FTSYFIGPLMADFYARYPSITLQLQEMSQ-EKIEDMLCRDELDVGIA 85 (238)
T ss_dssp ---CEEEEECH--H--HHTTTHHHHHHHHHHHCTTSCEEEEECCH-HHHHHHHHTTSCSEEEE
T ss_pred cCCeEEEeech--h--hHHHHHHHHHHHHHHhCCCcEEEEEECCH-HHHHHHHHcCCCcEEEE
Confidence 35789999755 4 45555555553322222232344444454 68899999999999885
No 273
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.02 E-value=27 Score=30.89 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF-------PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~-------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
+..++.+=..|...+.+++|.....++. -|.+ ...++.+|.++...++|.+|.+++..+++..|
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 5566777778888999999999999985 3432 45678899999999999999999888876554
No 274
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=43.71 E-value=56 Score=27.12 Aligned_cols=27 Identities=7% Similarity=-0.114 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHH
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSY 31 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~ 31 (222)
-.+++.|..+|..|.+-+++.+|..+|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 368999999999999999999999888
No 275
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=42.70 E-value=11 Score=27.60 Aligned_cols=59 Identities=3% Similarity=-0.025 Sum_probs=35.2
Q ss_pred ccccceeeEeeccccccCCCchhhHHHHHHhhhcceeecCCCCChHHHHHHHHhCCCcEEEeCC
Q psy17695 135 AQRLESLYKVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHILVNMN 198 (222)
Q Consensus 135 ~~rLRIGYvS~~d~~f~~H~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~iDILvDL~ 198 (222)
.++||||..+ + +..+-+..++.+-.+..=+.=+++...+. .++.+.+.+.++||.|-..
T Consensus 3 ~g~l~Ig~~~-~---~~~~~l~~~l~~~~~~~P~i~i~i~~~~~-~~~~~~l~~g~~Dl~i~~~ 61 (219)
T 3jv9_A 3 EGAFKLGLIF-T---VAPYLLPKLIVSLRRTAPKMPLMLEENYT-HTLTESLKRGDVDAIIVAE 61 (219)
T ss_dssp CCCEEEEEET-T---THHHHHHHHHHHHHHHSTTCCEEEEEECH-HHHHHHHHHTSSSEEEEES
T ss_pred CCcEEEEEcc-h---hhHHHHHHHHHHHHHHCCCcEEEEEeCCc-HHHHHHHHcCCCCEEEEcC
Confidence 5689999876 3 22222222332222222233345554454 6899999999999998654
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=41.77 E-value=63 Score=23.47 Aligned_cols=64 Identities=13% Similarity=-0.010 Sum_probs=48.5
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLK--PDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI 71 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 71 (222)
++||.....|...+... +++.+.|....... -..+..+...+..+-..|++.+|.+.|+..++.
T Consensus 65 knD~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 65 HNDPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp TTCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 35667777787777654 33777887777654 556777888888899999999999999888754
No 277
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=41.76 E-value=9.8 Score=28.41 Aligned_cols=60 Identities=5% Similarity=0.089 Sum_probs=35.0
Q ss_pred chhccccceeeEeeccccccCCCchhhHHHHHHhhh-cceeecCCCCChHHHHHHHHhCCCcEEEeC
Q psy17695 132 QRYAQRLESLYKVMWDRYSQNLPVTHITQAKIAREA-EHFLDLSQVPCNGKAADRIHKDGIHILVNM 197 (222)
Q Consensus 132 ~~~~~rLRIGYvS~~d~~f~~H~v~~l~~~~~~~~~-~~~~~~~~~~~~~~~a~~i~~d~iDILvDL 197 (222)
....++||||..+ +- ...-+..+ -.++++.. +.=+++...+. .++.+.+++.+||+.|-.
T Consensus 4 ~~~~g~l~Ig~~~-~~---~~~~lp~~-l~~f~~~~P~v~l~l~~~~~-~~l~~~L~~g~iDl~i~~ 64 (218)
T 2y7p_A 4 FASTRTFNLAMTD-IG---EMYFMPPL-MEALAQRAPHIQISTLRPNA-GNLKEDMESGAVDLALGL 64 (218)
T ss_dssp TTCCCEEEEECCH-HH---HHHHHHHH-HHHHHHHCTTCEEEEECCCT-TTHHHHHHHTSSCEEEEC
T ss_pred cccceEEEEEecH-HH---HHHHHHHH-HHHHHHHCCCCEEEEEeCCc-ccHHHHHhCCCceEEEec
Confidence 3456899999865 22 11111111 23344333 22344545554 589999999999999853
No 278
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=41.30 E-value=73 Score=20.97 Aligned_cols=60 Identities=8% Similarity=-0.146 Sum_probs=43.1
Q ss_pred HHHHhcccCCCcHHHHHHHHHHHHhCCCCH----HHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 13 FSNSSFPSPGNIPEAIQSYRTALKLKPDFP----DAYCNL--AHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 13 ~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~----~a~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
.-|..+...|+|=+|-+.++..+.-.|+.. ..+..+ |......|++ |...+.+++..+..
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~ 71 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEG 71 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHh
Confidence 456778888999999999999999997632 122222 2234457888 88888888877764
No 279
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=40.12 E-value=10 Score=27.83 Aligned_cols=59 Identities=7% Similarity=-0.154 Sum_probs=35.1
Q ss_pred hccccceeeEeeccccccCCCchhhHHHHHHhhhcceeecCCCCChHHHHHHHHhCCCcEEEeC
Q psy17695 134 YAQRLESLYKVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHILVNM 197 (222)
Q Consensus 134 ~~~rLRIGYvS~~d~~f~~H~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~iDILvDL 197 (222)
..++||||..+ + +...-...++.+-.+..=+.=+++...+. .++.+.+.+.++||.|-.
T Consensus 6 ~~g~l~Ig~~~-~---~~~~~l~~~l~~f~~~~P~i~i~i~~~~~-~~~~~~l~~g~~Di~i~~ 64 (222)
T 4ab5_A 6 EAGELRIAVEC-H---TCFDWLMPAMGEFRPMWPQVELDIVSGFQ-ADPVGLLLQHRADLAIVS 64 (222)
T ss_dssp TTEEEEEECCC-T---TTHHHHHHHHHHHHHHSTTEEEEEECCCC-SCTHHHHHTTSCSEEEES
T ss_pred ccceEEEEEeh-H---HHHHHHHHHHHHHHHHCCCcEEEEecCCH-HHHHHHHHcCCcCEEEec
Confidence 46789999876 3 22222222332222222233344555554 588999999999999864
No 280
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=39.94 E-value=43 Score=30.23 Aligned_cols=58 Identities=7% Similarity=-0.139 Sum_probs=45.7
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695 12 LFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS 70 (222)
Q Consensus 12 ~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 70 (222)
...+.++. .|++++|...|++.-.-..+.....+=+|.++...|+-++|...|+++..
T Consensus 290 ~~~r~Alr-~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 290 RRVRMALG-TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHH-HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHH-CCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34456664 59999999999876664456677888889999999999999998888764
No 281
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=39.46 E-value=12 Score=28.14 Aligned_cols=61 Identities=7% Similarity=0.090 Sum_probs=37.4
Q ss_pred chhccccceeeEeeccccccCCCchhhHHHHHHhhhcceeecCCCCChHHHHHHHHhCCCcEEEeC
Q psy17695 132 QRYAQRLESLYKVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHILVNM 197 (222)
Q Consensus 132 ~~~~~rLRIGYvS~~d~~f~~H~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~iDILvDL 197 (222)
....++||||... +- ...-+..++.+-.+..=+.=+++...+. .++.+.+.+.++||.|-.
T Consensus 15 ~~~~g~l~Ig~~~-~~---~~~~l~~~l~~f~~~~P~i~l~~~~~~~-~~~~~~l~~g~~Dl~i~~ 75 (241)
T 3oxn_A 15 QQCDQTFTIATTD-YA---MQTILPFALPRIYQEAPNVSFNFLPLQH-DRLSDQLTYEGADLAICR 75 (241)
T ss_dssp CSCCCEEEEEECS-HH---HHHTHHHHHHHHHHHCTTCEEEEEECCG-GGHHHHHHTSCCSEEEEC
T ss_pred ccCCceEEEEech-HH---HHHHHHHHHHHHHHHCCCCEEEEEECCc-ccHHHHHHcCCCCEEEec
Confidence 3457899999977 32 2222222332222222233455555665 689999999999999964
No 282
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=39.26 E-value=61 Score=31.36 Aligned_cols=30 Identities=7% Similarity=0.174 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHHHHH
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTA 34 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~A 34 (222)
|.++..-+-+|.++...|++++|..+|++|
T Consensus 839 ~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 839 NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344445566677777777777777777665
No 283
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.11 E-value=42 Score=31.87 Aligned_cols=32 Identities=6% Similarity=0.120 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHH
Q psy17695 5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALK 36 (222)
Q Consensus 5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~ 36 (222)
|.++-.-+-+|.++...|++++|..+|++|-.
T Consensus 837 ~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 837 NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 56677778999999999999999999998763
No 284
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=38.60 E-value=19 Score=27.00 Aligned_cols=61 Identities=8% Similarity=0.010 Sum_probs=36.8
Q ss_pred hhccccceeeEeeccccccCCCchhhHHHHHHhhhcceeecCCCCChHHHHHHHHhCCCcEEEeCC
Q psy17695 133 RYAQRLESLYKVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHILVNMN 198 (222)
Q Consensus 133 ~~~~rLRIGYvS~~d~~f~~H~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~iDILvDL~ 198 (222)
...++||||... . +...-+..++.+-.+..=+.=+++...+. .++.+.+.+.++||.|-..
T Consensus 24 ~~~g~l~Ig~~~--~--~~~~~l~~~l~~f~~~~P~i~l~i~~~~~-~~~~~~L~~g~~Dl~i~~~ 84 (238)
T 3onm_A 24 NMEGSLIIGASD--D--TADTLLPFLLNRVATLYPRLAIDVRVKRS-PFIADMLSSGEVDLAITTA 84 (238)
T ss_dssp ---CCEEEEECH--H--HHTTHHHHHHHHHHHHCTTCCEEEEECCH-HHHHHHHHHTSCSEEEECS
T ss_pred CCceeEEEeccc--h--hhHHHHHHHHHHHHHHCCCcEEEEEECCH-HHHHHHHHCCCccEEEEec
Confidence 346799999876 3 44444444443222222233345555564 6899999999999999654
No 285
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=38.41 E-value=23 Score=22.79 Aligned_cols=28 Identities=7% Similarity=0.127 Sum_probs=17.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695 48 LAHCLQIVCDWTDYEARMKKLVSIVAEQ 75 (222)
Q Consensus 48 l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (222)
+|.=+...|+++.|..+|+-++..+.+.
T Consensus 18 ~ARe~Al~GnYdta~~yY~g~~~qI~k~ 45 (78)
T 2rpa_A 18 LAREYALLGNYDSAMVYYQGVLDQMNKY 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 4445556667777777776666666553
No 286
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=37.48 E-value=27 Score=25.50 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=27.4
Q ss_pred CChHHHHHHHHhCCCcEEEeCCC--CCCCcchhhhhhCC
Q psy17695 177 PCNGKAADRIHKDGIHILVNMNG--YTKGARNEIFALRP 213 (222)
Q Consensus 177 ~~~~~~a~~i~~d~iDILvDL~G--~t~~~r~~i~a~rp 213 (222)
.+ .++.++|++.+||.+|++.. .....+.+.++.|=
T Consensus 70 G~-p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR 107 (152)
T 1b93_A 70 GD-QQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLR 107 (152)
T ss_dssp HH-HHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHH
T ss_pred CC-chHHHHHHCCCccEEEEcCCcccCCcccccHHHHHH
Confidence 44 68999999999999999986 43333677776653
No 287
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=37.31 E-value=70 Score=26.14 Aligned_cols=27 Identities=11% Similarity=-0.252 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHhcccCCCcHHHHHHHH
Q psy17695 6 FFKVGILFSNSSFPSPGNIPEAIQSYR 32 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~ 32 (222)
++|+.|..+|..|.+-|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 689999999999999999999999884
No 288
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=37.20 E-value=21 Score=25.50 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCCcEEEeCCC--CCCCcchhhhhhC
Q psy17695 180 GKAADRIHKDGIHILVNMNG--YTKGARNEIFALR 212 (222)
Q Consensus 180 ~~~a~~i~~d~iDILvDL~G--~t~~~r~~i~a~r 212 (222)
.++.++|++.+||.+|++.. .....+.+.++.|
T Consensus 64 p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~Ir 98 (134)
T 2xw6_A 64 QQMGARVAEGRILAVIFFRDPLTAQPHEPDVQALL 98 (134)
T ss_dssp HHHHHHHHTTCEEEEEEECCTTTCCTTSCCSHHHH
T ss_pred chHHHHHHCCCccEEEEccCcccCCCccchHHHHH
Confidence 68999999999999999886 4333266666654
No 289
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=36.07 E-value=41 Score=25.51 Aligned_cols=33 Identities=6% Similarity=-0.067 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695 42 PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74 (222)
Q Consensus 42 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 74 (222)
+..++.+|..++..++|.+|.+.+.++.+..++
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 456889999999999999999999999887654
No 290
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=36.06 E-value=16 Score=27.00 Aligned_cols=56 Identities=7% Similarity=0.014 Sum_probs=33.1
Q ss_pred ccccceeeEeeccccccCCCchhhHHHHHHhhh-cceeecCCCCChHHHHHHHHhCCCcEEEe
Q psy17695 135 AQRLESLYKVMWDRYSQNLPVTHITQAKIAREA-EHFLDLSQVPCNGKAADRIHKDGIHILVN 196 (222)
Q Consensus 135 ~~rLRIGYvS~~d~~f~~H~v~~l~~~~~~~~~-~~~~~~~~~~~~~~~a~~i~~d~iDILvD 196 (222)
.++||||... . +..+-+..++ .++++.. +-=+++...+. .++.+.+.+.++||.|-
T Consensus 4 ~g~lrIg~~~-~---~~~~~l~~~l-~~f~~~~P~v~l~l~~~~~-~~~~~~l~~g~~Dl~i~ 60 (219)
T 1i6a_A 4 SGPLHIGLIP-T---VGPYLLPHII-PMLHQTFPKLEMYLHEAQT-HQLLAQLDSGKLDAVIL 60 (219)
T ss_dssp CEEEEEEECT-T---THHHHHHHHH-HHHHHHCTTEEEEEEECCH-HHHHHHHHHTSCSEEEE
T ss_pred ceEEEEEecc-c---hhhhhhhHHH-HHHHHHCCCeEEEEEECCh-HHHHHHHHcCCeeEEEe
Confidence 5689999866 2 2222222222 2333332 32344444454 69999999999999885
No 291
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=35.45 E-value=16 Score=26.90 Aligned_cols=59 Identities=10% Similarity=0.057 Sum_probs=35.8
Q ss_pred hccccceeeEeeccccccCCCchhhHHHHHHhh-hcceeecCCCCChHHHHHHHHhCCCcEEEeCC
Q psy17695 134 YAQRLESLYKVMWDRYSQNLPVTHITQAKIARE-AEHFLDLSQVPCNGKAADRIHKDGIHILVNMN 198 (222)
Q Consensus 134 ~~~rLRIGYvS~~d~~f~~H~v~~l~~~~~~~~-~~~~~~~~~~~~~~~~a~~i~~d~iDILvDL~ 198 (222)
..++||||... +- ...-+..++. ++++. =+.=+++...+. .++.+.+.+.++||.|-..
T Consensus 9 ~~g~l~Ig~~~-~~---~~~~l~~~l~-~~~~~~P~v~i~~~~~~~-~~~~~~l~~g~~Dl~i~~~ 68 (232)
T 3ho7_A 9 LTGRLNIAVLP-TI---APYLLPRVFP-IWKKELAGLEIHVSEMQT-SRCLASLLSGEIDMAIIAS 68 (232)
T ss_dssp -CEEEEEEECT-TT---HHHHHHHHHH-HHHHHSTTEEEEEEECCH-HHHHHHHHHTSCSEEEESS
T ss_pred cceeEEEEecc-cc---chhhhHHHHH-HHHHHCCCcEEEEEeCCH-HHHHHHHHcCCCCEEEEcC
Confidence 36789999876 32 2222222222 33332 233455555564 7999999999999999654
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=35.34 E-value=1.2e+02 Score=22.18 Aligned_cols=65 Identities=12% Similarity=0.059 Sum_probs=49.1
Q ss_pred CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17695 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLK--PDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIV 72 (222)
Q Consensus 2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 72 (222)
++||.....|..++... +++.+.|....... -..+..+...+..+-..|++.+|.+.|+..++..
T Consensus 60 knD~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp TTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 45677778888887764 33667777776654 5567778888888999999999999998887543
No 293
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=35.12 E-value=36 Score=28.12 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=23.4
Q ss_pred HHHHhh-hcceeecCCCCCh------------HHHHHHHHhCCCcEEEeCCCCCC
Q psy17695 161 AKIARE-AEHFLDLSQVPCN------------GKAADRIHKDGIHILVNMNGYTK 202 (222)
Q Consensus 161 ~~~~~~-~~~~~~~~~~~~~------------~~~a~~i~~d~iDILvDL~G~t~ 202 (222)
.++|.. +|..+-++.+.-+ .++|+.+ ++||++| .|||-
T Consensus 201 ~~Lk~~g~D~II~l~H~G~~~d~~~~~~e~~~~~lA~~v--~giD~Ii--gGHsH 251 (341)
T 3gve_A 201 PKMKAEGADVIIALAHTGIEKQAQSSGAENAVFDLATKT--KGIDAII--SGHQH 251 (341)
T ss_dssp HHHHHTTCSEEEEEECCCCCSSCCCTTCSSCHHHHHHHC--SCCCEEE--ECSSC
T ss_pred HHHHhcCCCEEEEEeccCccccccccccchhHHHHHhcC--CCCcEEE--ECCCC
Confidence 355654 7877776665320 1466655 7899998 56653
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=34.73 E-value=40 Score=24.57 Aligned_cols=37 Identities=5% Similarity=0.045 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH
Q psy17695 6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP 42 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~ 42 (222)
..+..+-..+..+...|++.+|...|+.+++-+..-.
T Consensus 99 ~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 99 LSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4577888899999999999999999999999765543
No 295
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=33.96 E-value=61 Score=21.48 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=36.5
Q ss_pred HHHHHHHhcc-cCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 10 GILFSNSSFP-SPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 10 ~~~~lg~~l~-~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
.+...+..+. ..+...+++..-..+++.+|++|..+..+ ...+++|.-......-.++...
T Consensus 17 ~Ld~vs~~f~~~a~~~~~~l~~Al~~L~~~psNPa~LAe~---Qa~lseynl~RNaQSntiKa~K 78 (92)
T 2g0u_A 17 YLTGIGRAFDDGVKDLNKQLQDAQANLTKNPSDPTALANY---QMIMSEYNLYRNAQSSAVKSMK 78 (92)
T ss_dssp HHHHHHGGGCTTTHHHHHHHHHHHHHHHHSTTCHHHHHHH---HHHHHHHHHHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 33456667777777788899999885544 4566666655544444444433
No 296
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=32.93 E-value=18 Score=26.84 Aligned_cols=58 Identities=12% Similarity=0.023 Sum_probs=35.5
Q ss_pred hccccceeeEeeccccccCCCchhhHHHHHHhhh-cceeecCCCCChHHHHHHHHhCCCcEEEeC
Q psy17695 134 YAQRLESLYKVMWDRYSQNLPVTHITQAKIAREA-EHFLDLSQVPCNGKAADRIHKDGIHILVNM 197 (222)
Q Consensus 134 ~~~rLRIGYvS~~d~~f~~H~v~~l~~~~~~~~~-~~~~~~~~~~~~~~~a~~i~~d~iDILvDL 197 (222)
..++||||... . +..+-+..++. ++++.. +-=+++...+. .++.+.+.+.++||.|-.
T Consensus 12 ~~g~lrIg~~~--~--~~~~~l~~~l~-~f~~~~P~v~l~l~~~~~-~~~~~~l~~g~~Dl~i~~ 70 (228)
T 2fyi_A 12 TSGVLTIATTH--T--QARYSLPEVIK-AFRELFPEVRLELIQGTP-QEIATLLQNGEADIGIAS 70 (228)
T ss_dssp CCEEEEEEECH--H--HHHHTHHHHHH-HHHHHCTTEEEEEEECCH-HHHHHHHHHTSCSEEEES
T ss_pred CcceEEEeecc--c--hHHHHHHHHHH-HHHHHCCCcEEEEEeCCH-HHHHHHHHcCCccEEEEe
Confidence 36789999865 2 33333333333 333332 33345554554 689999999999999854
No 297
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=31.56 E-value=1e+02 Score=26.21 Aligned_cols=48 Identities=17% Similarity=-0.004 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17695 25 PEAIQSYRTALKLKP--------DFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIV 72 (222)
Q Consensus 25 ~eA~~~~~~Al~l~P--------~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 72 (222)
+.-++.++.|+.+=| +...++..++.+++..++|++|.+..++++...
T Consensus 165 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 220 (454)
T 3myv_A 165 DFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKDA 220 (454)
T ss_dssp HHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 444555666666544 345688999999999999999999999888643
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.47 E-value=25 Score=31.14 Aligned_cols=35 Identities=9% Similarity=-0.007 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP 42 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~ 42 (222)
...++.+|.++.-+++|.+|.+++..|++..|.+.
T Consensus 270 ~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 270 ARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 56788899999999999999999999999988654
No 299
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=31.23 E-value=38 Score=25.41 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=26.1
Q ss_pred HHHHHHHHhCCCcEEEeCCC--CCCCcchhhhhhCC
Q psy17695 180 GKAADRIHKDGIHILVNMNG--YTKGARNEIFALRP 213 (222)
Q Consensus 180 ~~~a~~i~~d~iDILvDL~G--~t~~~r~~i~a~rp 213 (222)
.++.++|++.+||.+|++.. .....+.+.++.|=
T Consensus 88 pqI~d~I~~geIdlVInt~dPl~~~~h~~D~~~IRR 123 (178)
T 1vmd_A 88 QQIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIR 123 (178)
T ss_dssp HHHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHH
T ss_pred chHHHHHHCCCccEEEEccCccCCCcccccHHHHHH
Confidence 68999999999999999986 43332667766553
No 300
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=30.39 E-value=1.4e+02 Score=25.78 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695 26 EAIQSYRTALKLKP-----------DFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI 71 (222)
Q Consensus 26 eA~~~~~~Al~l~P-----------~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 71 (222)
.-++.++.|+.+=| +...++..++.+++..++|++|.+..++++..
T Consensus 176 ~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 176 QSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34445555555443 33568899999999999999999999888754
No 301
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=30.34 E-value=1.9e+02 Score=24.33 Aligned_cols=63 Identities=11% Similarity=-0.005 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHhC---CCCHH----HHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLK---PDFPD----AYCNLAHCLQ-IVCDWTDYEARMKKLVS 70 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~---P~~~~----a~~~l~~~~~-~~~~~~~a~~~~~~~~~ 70 (222)
.+.+..-..++..++++..+.++|.+|.+.. +-++. ....-|..++ ..++|..|...|-++.+
T Consensus 139 lev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 139 VEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 4567777888999999999999999998764 23333 3455567778 79999999988877654
No 302
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=29.96 E-value=56 Score=27.28 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHH
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALK 36 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~ 36 (222)
.+|-+-.+|..|-.+|...|+..+|+..|+++-+
T Consensus 200 ~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 200 EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4788889999999999999999999999988755
No 303
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=29.47 E-value=79 Score=30.58 Aligned_cols=58 Identities=10% Similarity=-0.045 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCC-CCHH----HHHHHHHHHHHcCCHHHHHH
Q psy17695 6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKP-DFPD----AYCNLAHCLQIVCDWTDYEA 63 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~----a~~~l~~~~~~~~~~~~a~~ 63 (222)
..+..++.+..++.+.|-++.+++..+.|++..+ ++.. .|.++-.....+|+|++|-.
T Consensus 897 ~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 897 LLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp SSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 3467788888999999999999999999999864 4432 57888888999999998743
No 304
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.37 E-value=54 Score=24.15 Aligned_cols=37 Identities=8% Similarity=0.036 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH
Q psy17695 6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP 42 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~ 42 (222)
..+..|-..|..+...|++.+|...|+.+++-+..-.
T Consensus 94 ~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 94 SLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4577888899999999999999999999999875543
No 305
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=28.70 E-value=55 Score=25.07 Aligned_cols=35 Identities=6% Similarity=-0.228 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC
Q psy17695 6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD 40 (222)
Q Consensus 6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~ 40 (222)
..+..|-..|..+...|++.+|...|+.+++-+-.
T Consensus 113 ~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 113 KLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 45778888999999999999999999999997644
No 306
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=28.48 E-value=1.5e+02 Score=25.22 Aligned_cols=48 Identities=10% Similarity=0.065 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17695 25 PEAIQSYRTALKLKP--------DFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIV 72 (222)
Q Consensus 25 ~eA~~~~~~Al~l~P--------~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 72 (222)
+.-++-++.|+.+=| +...++..++.+++..++|++|.+..++++...
T Consensus 171 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~~ 226 (461)
T 3kez_A 171 TEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKGA 226 (461)
T ss_dssp HHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 344555666666544 335688999999999999999999999888643
No 307
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=28.26 E-value=28 Score=27.71 Aligned_cols=57 Identities=5% Similarity=-0.027 Sum_probs=33.9
Q ss_pred hccccceeeEeeccccccCCCchhhHHHHHHhh---h---cceeecCCCCChHHHHHHHHhCCCcEEEe
Q psy17695 134 YAQRLESLYKVMWDRYSQNLPVTHITQAKIARE---A---EHFLDLSQVPCNGKAADRIHKDGIHILVN 196 (222)
Q Consensus 134 ~~~rLRIGYvS~~d~~f~~H~v~~l~~~~~~~~---~---~~~~~~~~~~~~~~~a~~i~~d~iDILvD 196 (222)
..++|||| .+ +. ....-+-.++ .+|++. . +.=+.+...+. .++.++|.+.++||.+=
T Consensus 18 ~~g~L~Ig-~~-~~--~~~~~lp~ll-~~F~~~~~~~~~P~v~v~l~~~~s-~~l~~~l~~G~~Dl~i~ 80 (294)
T 3cvg_A 18 SPVQLRIG-NG-GA--GQSGLVKELA-DAFIKSKVDSGSAPFKVAWYKSDT-TVTINYLKDGIVDVGIT 80 (294)
T ss_dssp -CEEEEEE-ES-HH--HHHTHHHHHH-HHHHHHHHSCC---CEEEEEECCH-HHHHHHHHTTSCSEEEE
T ss_pred CCceEEEE-ec-cc--hhHHHHHHHH-HHHHhhhcccCCCCeEEEEEeCCH-HHHHHHHHcCCCcEEEE
Confidence 46789999 44 44 3322222233 333333 2 33355555564 79999999999999874
No 308
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.54 E-value=1.8e+02 Score=24.63 Aligned_cols=62 Identities=10% Similarity=-0.121 Sum_probs=46.7
Q ss_pred HHHHHHHHhcccCCCcHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695 9 VGILFSNSSFPSPGNIPEAIQSYRTALKL----KPD--FPDAYCNLAHCLQIVCDWTDYEARMKKLVS 70 (222)
Q Consensus 9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l----~P~--~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 70 (222)
.....|+.++.+.|++.+|...+.....- .+. -.+.+..-...+...++|..|...+.++..
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK 205 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44578999999999999999999887532 111 134556666777889999999988888753
No 309
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.08 E-value=59 Score=25.28 Aligned_cols=61 Identities=10% Similarity=-0.025 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695 3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTAL------KLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73 (222)
Q Consensus 3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al------~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 73 (222)
.||.+...|..++.. .+++.+.|.... + .+..|...+..+-..|+|.+|.+.|+..++...
T Consensus 115 nD~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~----~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 115 DDVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQE----SSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp TCHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTT----BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 455666666666653 134555555443 3 255677778888888999999998888876543
No 310
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=26.95 E-value=50 Score=25.38 Aligned_cols=59 Identities=10% Similarity=0.092 Sum_probs=35.7
Q ss_pred hccccceeeEeeccccccCCCchhhHHHHHHhhhcceeecCCCCChHHHHHHHHhCCCcEEEeC
Q psy17695 134 YAQRLESLYKVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHILVNM 197 (222)
Q Consensus 134 ~~~rLRIGYvS~~d~~f~~H~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~iDILvDL 197 (222)
..++||||... . +...-+..++.+-.+..-+.=+++...+. .++.+.+.+.++||.|-.
T Consensus 89 ~~g~l~Ig~~~--~--~~~~~l~~~l~~f~~~~P~i~l~~~~~~~-~~~~~~l~~g~~Dl~i~~ 147 (294)
T 1ixc_A 89 DVGELSVAYFG--T--PIYRSLPLLLRAFLTSTPTATVSLTHMTK-DEQVEGLLAGTIHVGFSR 147 (294)
T ss_dssp CCEEEEEEECS--G--GGGTHHHHHHHHHHHHCTTEEEEEEECCH-HHHHHHHHHTSCSEEEES
T ss_pred CCceEEEEEcc--c--hhHHHHHHHHHHHHHHCCCcEEEEEeCCH-HHHHHHHHCCCccEEEEe
Confidence 36789999765 3 33333333333222222233345555554 688999999999999853
No 311
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=26.39 E-value=31 Score=19.62 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=21.4
Q ss_pred cceeecCCCCChHHHHHHHHhCCCcE
Q psy17695 168 EHFLDLSQVPCNGKAADRIHKDGIHI 193 (222)
Q Consensus 168 ~~~~~~~~~~~~~~~a~~i~~d~iDI 193 (222)
..|=++-+.+. +++++.|.+|+-|+
T Consensus 8 ~sWPELVG~~~-~~A~~~I~~e~P~v 32 (45)
T 1hym_A 8 SSWPHLVGVGG-SVAKAIIERQNPNV 32 (45)
T ss_dssp SBCCCCTTSCH-HHHHHHHHHHCTTC
T ss_pred CcChhhcCCcH-HHHHHHHHHHCCCC
Confidence 47889999997 89999999997665
No 312
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.98 E-value=1.7e+02 Score=22.70 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=18.5
Q ss_pred CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhC
Q psy17695 7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLK 38 (222)
Q Consensus 7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~ 38 (222)
.+..|-..+..+...|++.+|...|+.+++-+
T Consensus 149 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 149 SSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34455555556666666666666666666544
No 313
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=25.12 E-value=1.1e+02 Score=22.60 Aligned_cols=70 Identities=9% Similarity=-0.050 Sum_probs=40.1
Q ss_pred hccccceeeEeeccccc--------cCCCchhhHHHHHHhhhc--ceeecCCCCChHHHHHHHHh--C--CCcEEEeCCC
Q psy17695 134 YAQRLESLYKVMWDRYS--------QNLPVTHITQAKIAREAE--HFLDLSQVPCNGKAADRIHK--D--GIHILVNMNG 199 (222)
Q Consensus 134 ~~~rLRIGYvS~~d~~f--------~~H~v~~l~~~~~~~~~~--~~~~~~~~~~~~~~a~~i~~--d--~iDILvDL~G 199 (222)
..+++|||.++.+|+.+ ..-.-+.++.+.+++.-- ..+.+-.-+. +++.+.|++ + +.|++| ++|
T Consensus 12 ~~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~-~~I~~al~~a~~~~~~DlVi-ttG 89 (178)
T 2pjk_A 12 APKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDK-IKILKAFTDALSIDEVDVII-STG 89 (178)
T ss_dssp -CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCH-HHHHHHHHHHHTCTTCCEEE-EES
T ss_pred CCCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCH-HHHHHHHHHHHhcCCCCEEE-ECC
Confidence 35689999999776322 123344555677766522 2233333232 567777654 3 499999 666
Q ss_pred CCCCcc
Q psy17695 200 YTKGAR 205 (222)
Q Consensus 200 ~t~~~r 205 (222)
.|+-..
T Consensus 90 G~s~g~ 95 (178)
T 2pjk_A 90 GTGYSP 95 (178)
T ss_dssp CCSSST
T ss_pred CCCCCC
Confidence 665543
No 314
>3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2, NYSGXRC, target 9462A, protein structure initiative; 1.87A {Bdellovibrio bacteriovorus HD100}
Probab=24.31 E-value=54 Score=26.74 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCcchhhhhhCCch---hhhccc
Q psy17695 180 GKAADRIHKDGIHILVNMNGYTKGARNEIFALRPAP---IQSSFT 221 (222)
Q Consensus 180 ~~~a~~i~~d~iDILvDL~G~t~~~r~~i~a~rpAP---vQv~~l 221 (222)
.+..+.||+++++|.||-+|--.-...--++.+.++ ..+.|+
T Consensus 139 ~~~v~avr~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~l~~i 183 (330)
T 3caw_A 139 ADMLTHIAASGMRMRLDFNALGSWQTFEKFMVNLPLTVRPLIEYV 183 (330)
T ss_dssp HHHHHHHHHTTCEEEEECTTCSCHHHHHHHHHTSCTTTGGGEEEE
T ss_pred HHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCceEE
Confidence 466677777899999999987654444456777777 666664
No 315
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.61 E-value=97 Score=29.37 Aligned_cols=52 Identities=8% Similarity=-0.224 Sum_probs=40.2
Q ss_pred HHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695 14 SNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV 69 (222)
Q Consensus 14 lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 69 (222)
+...+...|.++-| +..+..-|.++-.-+-+|.++...|++++|..+|+++-
T Consensus 816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44555666666543 34556778888888999999999999999999998764
No 316
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=23.34 E-value=1.5e+02 Score=25.26 Aligned_cols=47 Identities=9% Similarity=0.066 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695 25 PEAIQSYRTALKLKP--------DFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI 71 (222)
Q Consensus 25 ~eA~~~~~~Al~l~P--------~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 71 (222)
+.-++-++.|+.+=| +...++..++.+++..++|++|.+..++++..
T Consensus 177 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 177 EQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 444555666666544 34568899999999999999999988888754
No 317
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=22.31 E-value=40 Score=26.70 Aligned_cols=59 Identities=12% Similarity=0.065 Sum_probs=35.6
Q ss_pred hccccceeeEeeccccccCCCchhhHHHHHHhhhcceeecCCCCChHHHHHHHHhCCCcEEEeC
Q psy17695 134 YAQRLESLYKVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHILVNM 197 (222)
Q Consensus 134 ~~~rLRIGYvS~~d~~f~~H~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~iDILvDL 197 (222)
..++||||... . +..+-+..++.+-.+..=+.=+++...+. .++.+.+.+.++||.|-.
T Consensus 91 ~~g~l~I~~~~--~--~~~~~l~~~l~~f~~~~P~v~i~l~~~~~-~~~~~~l~~g~~Dlai~~ 149 (324)
T 1al3_A 91 DKGSLYVATTH--T--QARYALPGVIKGFIERYPRVSLHMHQGSP-TQIAEAVSKGNADFAIAT 149 (324)
T ss_dssp CEEEEEEEECH--H--HHHHTSHHHHHHHHHHCTEEEEEEEECCH-HHHHHHHHTTCCSEEEES
T ss_pred CCCeEEEEech--h--hhhhHHHHHHHHHHHHCCCCEEEEEECCH-HHHHHHHHCCCceEEEEe
Confidence 36789999765 3 33333333333222222233345555554 689999999999999965
No 318
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=22.22 E-value=38 Score=26.27 Aligned_cols=58 Identities=5% Similarity=-0.074 Sum_probs=35.4
Q ss_pred hccccceeeEeeccccccCCCchhhHHHHHHhhh-cceeecCCCCChHHHHHHHHhCCCcEEEeC
Q psy17695 134 YAQRLESLYKVMWDRYSQNLPVTHITQAKIAREA-EHFLDLSQVPCNGKAADRIHKDGIHILVNM 197 (222)
Q Consensus 134 ~~~rLRIGYvS~~d~~f~~H~v~~l~~~~~~~~~-~~~~~~~~~~~~~~~a~~i~~d~iDILvDL 197 (222)
..++||||... +- ..+-+..++ .++++.. +.=+++...+. .++.+.+.+.++||.|-.
T Consensus 93 ~~g~l~i~~~~-~~---~~~~l~~~l-~~f~~~~P~i~i~l~~~~~-~~~~~~l~~g~~Dl~i~~ 151 (306)
T 3fzv_A 93 IAGQIDIGCFE-TV---APLYLPGLI-AGFRQAYPGVEIRIRDGEQ-QELVQGLTSGRFDLAFLY 151 (306)
T ss_dssp CCEEEEEEEEG-GG---HHHHHHHHH-HHHHHHCTTEEEEEEEECH-HHHHHHHHHTSCSEEEEC
T ss_pred CCceEEEEech-hh---hHHHHHHHH-HHHHHHCCCeEEEEEeCCH-HHHHHHHHCCCccEEEEe
Confidence 46789999977 32 222222222 2333332 33355555564 688999999999999854
No 319
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.80 E-value=75 Score=22.02 Aligned_cols=23 Identities=4% Similarity=-0.051 Sum_probs=17.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhh
Q psy17695 53 QIVCDWTDYEARMKKLVSIVAEQ 75 (222)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~~~~ 75 (222)
-+.|+-+.|.+.|++.+..+...
T Consensus 33 DE~g~k~~Al~lYk~GI~eLe~G 55 (116)
T 2dl1_A 33 DELGQKEEAKNYYKQGIGHLLRG 55 (116)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHHh
Confidence 34488888999998888777664
No 320
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=20.74 E-value=64 Score=18.92 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=16.4
Q ss_pred cHHHHHHHHHHHHhCCCCH
Q psy17695 24 IPEAIQSYRTALKLKPDFP 42 (222)
Q Consensus 24 ~~eA~~~~~~Al~l~P~~~ 42 (222)
.+-|++|.+.|.+++|++.
T Consensus 30 leVAiqCi~~aF~v~~~d~ 48 (52)
T 4gof_A 30 LEVAIQCLETAFGVTVEDS 48 (52)
T ss_dssp HHHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHcCCCcccc
Confidence 5779999999999999863
No 321
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=20.53 E-value=43 Score=25.61 Aligned_cols=58 Identities=10% Similarity=0.050 Sum_probs=33.7
Q ss_pred hhccccceeeEeeccccccCCCchhhHHHHHHhhh-cceeecCCCCChHHHHHHHHhCCCcEEEeC
Q psy17695 133 RYAQRLESLYKVMWDRYSQNLPVTHITQAKIAREA-EHFLDLSQVPCNGKAADRIHKDGIHILVNM 197 (222)
Q Consensus 133 ~~~~rLRIGYvS~~d~~f~~H~v~~l~~~~~~~~~-~~~~~~~~~~~~~~~a~~i~~d~iDILvDL 197 (222)
...++||||..+ + +. .-+..++ .++++.. +.=+++...+. .++.+.+.+.++||.|-.
T Consensus 25 ~~~g~l~Ig~~~-~---~~-~~l~~~l-~~f~~~~P~i~v~i~~~~~-~~~~~~l~~g~~Di~i~~ 83 (290)
T 1twy_A 25 VQASEITISGST-S---VA-RIMDVLA-EKYNQQHPETYVAVQGVGS-TAGISLLKKGVADIAMTS 83 (290)
T ss_dssp ---CEEEEEECH-H---HH-HHHHHHH-HHHHHHCTTCEEEEEESCH-HHHHHHHHTTSCSEEEES
T ss_pred ccCCCEEEecCc-c---hH-HHHHHHH-HHHHhhCCCceEEEEecCc-HHHHHHHhcCCCcEEEec
Confidence 346789999765 2 33 2222232 3333332 33345554554 689999999999998854
No 322
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.32 E-value=3.9e+02 Score=22.53 Aligned_cols=65 Identities=15% Similarity=0.098 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHH---hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17695 8 KVGILFSNSSFPSPGNIPEAIQSYRTALK---LKPDFP----DAYCNLAHCLQIVCDWTDYEARMKKLVSIV 72 (222)
Q Consensus 8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~---l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 72 (222)
.+.+.....++...+++..|...++++.. -.+.++ ..+...|..+...++|.+|-.+|.++....
T Consensus 177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 177 IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 45667777888899999999999998742 234444 345677888889999999998888887543
Done!