RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17695
(222 letters)
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 141 bits (357), Expect = 4e-39
Identities = 132/220 (60%), Positives = 151/220 (68%), Gaps = 21/220 (9%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
GNIPEAI SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY+ RMKKLVSIVA+QL+KNRL
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 184
Query: 82 PSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTES--------------- 126
PSVHPHHSMLYPL+H +RKAIA RH NLCL K
Sbjct: 185 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVS 244
Query: 127 ------PLFCVQRYAQRLESLYKVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNG 180
P + + + + K Y+ + + K+ EA HF+DLSQ+PCNG
Sbjct: 245 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 304
Query: 181 KAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQSSF 220
KAADRIH+DGIHILVNMNGYTKGARNE+FALRPAPIQ+ +
Sbjct: 305 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMW 344
Score = 59.8 bits (144), Expect = 9e-11
Identities = 23/66 (34%), Positives = 32/66 (48%)
Query: 97 EYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQRYAQRLESLYKVMWDRYSQNLPVT 156
EY +L LK +R KVW+ R SPLF ++Y LE LY MW+ Y+
Sbjct: 657 EYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHYAAGNKPD 716
Query: 157 HITQAK 162
H+ +
Sbjct: 717 HMIKPV 722
Score = 47.5 bits (112), Expect = 1e-06
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI 71
G + EA+ Y+ A+++ P F DAY N+ + L+ + D + + I
Sbjct: 57 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 106
Score = 42.5 bits (99), Expect = 6e-05
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
GNI EA++ YR AL++ P+F A+ NLA LQ
Sbjct: 23 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 54
Score = 28.2 bits (62), Expect = 2.5
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 37 LKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI 71
P D+ NLA+ + + + +K + +
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 38
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 131 bits (331), Expect = 8e-36
Identities = 44/215 (20%), Positives = 80/215 (37%), Gaps = 23/215 (10%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
G A +Y A +L P+ P L + + +CDW + ++ + VA +
Sbjct: 105 GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA-----QGV 159
Query: 82 PSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPL--------FCVQR 133
+V P + + + A A A + R++ PL F
Sbjct: 160 GAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAPTRVRSKGPLRVGFVSNGFGAHP 219
Query: 134 YAQRLESLYKVMWDR-------YS-QNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADR 185
+L++ + R + T +A D++ + + A
Sbjct: 220 TGLLTVALFEAL-QRRQPDLQMHLFATSGDDGSTLRTRLAQASTLHDVTALG-HLATAKH 277
Query: 186 IHKDGIHILVNMNGYTKGARNEIFALRPAPIQSSF 220
I GI +L ++ G+ G R E+FALRPAP+Q ++
Sbjct: 278 IRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNW 312
Score = 50.6 bits (121), Expect = 1e-07
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 101 AIAARHA-NLCLLKAMRAKVWQARTESPLFCVQRYAQRLESLYKVMWDRY 149
A A A + L A+ A+V R S +F + +A +L + + R+
Sbjct: 514 AKAVALASDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQALARRH 563
Score = 47.9 bits (114), Expect = 9e-07
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 7/98 (7%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLD-KNR 80
+ P + R A++ +P A+ LA + D T E +++ +++ + R
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 81 LPSVHPHHSMLYPLTHEYRKAIAAR------HANLCLL 112
L V ++A A L
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA 100
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 75.4 bits (185), Expect = 4e-16
Identities = 22/138 (15%), Positives = 40/138 (28%), Gaps = 8/138 (5%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
+ EA++ + A L P +P+ L+ + T K + ++ L
Sbjct: 272 ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKP----KKLQSML 327
Query: 82 PSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQRYAQRLES- 140
S+ P H L P ++ + + L L + L V E
Sbjct: 328 GSLRPAH--LGPCGDGRYQSASGQKMTLELKPLSTLQPGVNSGTVVLGKVVFSLTTEEKV 385
Query: 141 -LYKVMWDRYSQNLPVTH 157
+ D V
Sbjct: 386 PFTFGLVDSDGPCYAVMV 403
Score = 45.4 bits (107), Expect = 6e-06
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 26 EAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
EA A+KL+P+ +A+ L
Sbjct: 121 EAEVLLSKAVKLEPELVEAWNQLGEVYW 148
Score = 39.2 bits (91), Expect = 5e-04
Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 9/146 (6%)
Query: 15 NSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYE-ARMKKLVSIV- 72
+S ++ ++++ + A+++ ++ L + + T ++ +S
Sbjct: 186 DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA 245
Query: 73 -AEQLDKNRLPSVHPHHSM--LYPLTHEYRKAIAA-RHANLCLLKAMRAKVWQARTESPL 128
AE++D+ + H + L+ Y +A+ A L + Q + L
Sbjct: 246 QAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA--AALDPAWPEPQQRE-QQLL 302
Query: 129 FCVQRYAQRLESLYKVMWDRYSQNLP 154
+ R LES K + L
Sbjct: 303 EFLSRLTSLLESKGKTKPKKLQSMLG 328
Score = 38.1 bits (88), Expect = 0.002
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI 71
G++ A + AL + + NL+ L+ + + E + S+
Sbjct: 151 GDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSV 199
Score = 36.1 bits (83), Expect = 0.007
Identities = 4/28 (14%), Positives = 6/28 (21%)
Query: 26 EAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ +Q L A L
Sbjct: 86 KTLQQMEEVLGSAQVEAQALMLKGKALN 113
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A
{Actinobacillus pleuropneumoniae serovaorganism_taxid}
PDB: 3q3h_A* 3q3i_A
Length = 631
Score = 53.4 bits (128), Expect = 1e-08
Identities = 27/241 (11%), Positives = 57/241 (23%), Gaps = 42/241 (17%)
Query: 18 FPSPGNIPEAIQSYRTALKLKPDF-------PDAYCNLAHCLQIVCDWTDYEARMK---- 66
S ++ + Y + + P+ +L LQ A K
Sbjct: 143 DSSKSSLIKFCILYLPESNVNLNLDVMWNISPELCASLCFALQSPRFIGTSTAFNKRATI 202
Query: 67 --KLVSIVAEQLDKNRLPSVHPHHSMLY------PLTHEYRKAIA---ARHANLCLLKAM 115
+ + + N +PS H ++ H+ ++A+ RH
Sbjct: 203 LQWFPRHLDQLKNLNNIPSAISHDVYMHCSYDTSVNKHDVKRALNHVIRRHIESEYGWKD 262
Query: 116 RAKVWQARTE---------SPLFC---VQRYAQRLESLYKVMWDRYSQNLPVTHITQAKI 163
R + R + + + +
Sbjct: 263 RDVAHIGYRNNKPVMVVLLEHFHSAHSIYRTHSTSMIAAR---EHFYLIGLGSPSVDQAG 319
Query: 164 AREAEHFLDLSQVPCNGKAADRIHK----DGIHILVNMNGYTKGARNEIFALRPAPIQSS 219
+ F ++ + + I +G I + R APIQ+
Sbjct: 320 QEVFDEFHLVAGDN-MKQKLEFIRSVCESNGAAIFYMPSIGMDMTTIFASNTRLAPIQAI 378
Query: 220 F 220
Sbjct: 379 A 379
Score = 29.5 bits (66), Expect = 0.88
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 101 AIAARHA-NLCLLKAMRAKVWQARTESPLFC------VQRYAQRLESLYK 143
A R A N +R + + + LF Q + ++L + K
Sbjct: 580 ERAVRLAENHQERLELRRYIIENNGLNTLFTGDPRPMGQVFLEKLNAFLK 629
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 51.4 bits (124), Expect = 3e-08
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G + EA+ Y AL+ P D A L
Sbjct: 165 GRLDEALAQYAKALEQAPKDLDLRVRYASALL 196
Score = 49.1 bits (118), Expect = 2e-07
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G + A+++ +T + P + Y L+
Sbjct: 53 GLVNPALENGKTLVARTPRYLGGYMVLSEAYV 84
Score = 48.7 bits (117), Expect = 3e-07
Identities = 4/32 (12%), Positives = 12/32 (37%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G + +A+ + A ++ P + +
Sbjct: 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYA 129
Score = 48.3 bits (116), Expect = 3e-07
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G A+ + ALK P P+A LA
Sbjct: 19 GRYDAALTLFERALKENPQDPEALYWLARTQL 50
Score = 41.0 bits (97), Expect = 9e-05
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G +A S + AL L+ P+ LA
Sbjct: 132 GERDKAEASLKQALALED-TPEIRSALAELYL 162
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 48.5 bits (117), Expect = 4e-08
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G+ EAI+ Y+ AL+L P+ +A+ NL +
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 54
Score = 47.8 bits (115), Expect = 6e-08
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G+ EAI+ Y+ AL+L P+ +A NL + Q
Sbjct: 57 GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 51.1 bits (123), Expect = 6e-08
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
GN A+ + TAL L+ D + L HC++
Sbjct: 284 GNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315
Score = 45.7 bits (109), Expect = 4e-06
Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 3/86 (3%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
N A + + AL + P+ P + +W E + + ++ +
Sbjct: 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232
Query: 82 PSVHPHHSML---YPLTHEYRKAIAA 104
P + L +Y +A+
Sbjct: 233 DKWEPLLNNLGHVCRKLKKYAEALDY 258
Score = 45.0 bits (107), Expect = 6e-06
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
EA+ +R AL L P Y + +
Sbjct: 250 KKYAEALDYHRQALVLIPQNASTYSAIGYIHS 281
Score = 43.1 bits (102), Expect = 3e-05
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 26 EAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
A + A L+ + A+ H
Sbjct: 109 HARRYLSKATTLEKTYGPAWIAYGHSFA 136
Score = 42.3 bits (100), Expect = 5e-05
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+A+ +Y TA +L +
Sbjct: 139 SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG 170
Score = 38.0 bits (89), Expect = 0.001
Identities = 4/32 (12%), Positives = 8/32 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
E + L P P ++ +
Sbjct: 70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYL 101
Score = 36.5 bits (85), Expect = 0.004
Identities = 2/32 (6%), Positives = 6/32 (18%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + ++ P L
Sbjct: 36 CDFKMCYKLTSVVMEKDPFHASCLPVHIGTLV 67
Score = 29.6 bits (67), Expect = 0.71
Identities = 10/81 (12%), Positives = 22/81 (27%), Gaps = 6/81 (7%)
Query: 26 EAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRLPSVH 85
+ ++ + D +LA CD+ ++ + D S
Sbjct: 6 PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVM-----EKDPFH-ASCL 59
Query: 86 PHHSMLYPLTHEYRKAIAARH 106
P H ++ + H
Sbjct: 60 PVHIGTLVELNKANELFYLSH 80
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 48.5 bits (117), Expect = 7e-08
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G+ EAI+ Y+ AL+L P+ +A NL + Q
Sbjct: 91 GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122
Score = 48.2 bits (116), Expect = 9e-08
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G+ EAI+ Y+ AL+L P+ +A+ NL +
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 54
Score = 47.0 bits (113), Expect = 3e-07
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G+ EAI+ Y+ AL+L P+ +A+ NL +
Sbjct: 57 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 51.0 bits (123), Expect = 8e-08
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G I AI +YR A++L+P FPDAYCNLA+ L+
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALK 282
Score = 49.1 bits (118), Expect = 3e-07
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G + EA+ Y+ A+++ P F DAY N+ + L+
Sbjct: 353 GKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384
Score = 48.7 bits (117), Expect = 5e-07
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G++ EA Y TAL+L P D+ NLA+ +
Sbjct: 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316
Score = 48.3 bits (116), Expect = 5e-07
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
GNI EA++ YR AL++ P+F A+ NLA LQ
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350
Score = 47.5 bits (114), Expect = 1e-06
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
A+ +Y AL L P+ + NLA
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 248
Score = 47.2 bits (113), Expect = 1e-06
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G++ A+Q+Y +AL+ PD +L + L+
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146
Score = 47.2 bits (113), Expect = 1e-06
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G I AI + A+ L P+F DAY NL + L+
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214
Score = 47.2 bits (113), Expect = 1e-06
Identities = 19/32 (59%), Positives = 22/32 (68%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G + EAI+ YR AL+LKPDF D Y NLA L
Sbjct: 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALV 112
Score = 46.4 bits (111), Expect = 2e-06
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G + EA Y A++ +P+F A+ NL
Sbjct: 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Score = 43.3 bits (103), Expect = 3e-05
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A+K P +AY NL + +
Sbjct: 47 RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78
Score = 42.1 bits (100), Expect = 7e-05
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G+ A + + +PD L+
Sbjct: 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF 44
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 48.6 bits (117), Expect = 2e-07
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G EAI S++ AL L+P+ + +A +
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYE 155
Score = 48.2 bits (116), Expect = 2e-07
Identities = 5/32 (15%), Positives = 8/32 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G + + +L PD L
Sbjct: 56 GAVDRGTELLERSLADAPDNVKVATVLGLTYV 87
Score = 47.8 bits (115), Expect = 3e-07
Identities = 4/32 (12%), Positives = 7/32 (21%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G +A+ D +L
Sbjct: 22 GRYSQAVMLLEQVYDADAFDVDVALHLGIAYV 53
Score = 46.7 bits (112), Expect = 9e-07
Identities = 4/32 (12%), Positives = 7/32 (21%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
A+ + P + L L
Sbjct: 90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALD 121
Score = 37.0 bits (87), Expect = 0.002
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNL 48
G EA+ ++ A +L +
Sbjct: 158 GRHEEALPHFKKANELDEGASVELALV 184
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 49.7 bits (119), Expect = 2e-07
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
AI+ A +L P A LA
Sbjct: 442 EKFNAAIKLLTKACELDPRSEQAKIGLAQLKL 473
Score = 45.9 bits (109), Expect = 5e-06
Identities = 6/47 (12%), Positives = 15/47 (31%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKL 68
G+ AI+ Y A +L+ + + + ++
Sbjct: 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQ 438
Score = 45.9 bits (109), Expect = 5e-06
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ A + ++ A L P+ Y LA L
Sbjct: 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355
Score = 45.1 bits (107), Expect = 7e-06
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
N EAI+ Y+ A++L P+ P Y N++ C
Sbjct: 39 KNFNEAIKYYQYAIELDPNEPVFYSNISACYI 70
Score = 45.1 bits (107), Expect = 8e-06
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G E+ + P P+ A L
Sbjct: 358 GKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389
Score = 44.7 bits (106), Expect = 9e-06
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI 54
N E + ++ A+ L P++P Y + I
Sbjct: 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI 322
Score = 43.6 bits (103), Expect = 2e-05
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G++ + I+ AL++KPD A A +
Sbjct: 73 GDLEKVIEFTTKALEIKPDHSKALLRRASANE 104
Score = 40.9 bits (96), Expect = 2e-04
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
I EAI+ + + L +
Sbjct: 476 EKIDEAIELFEDSAILARTMDEKLQATTFAEA 507
Score = 37.8 bits (88), Expect = 0.002
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
N+ +A + ++ L P P++Y LA L
Sbjct: 257 NNLLDAQVLLQESINLHPT-PNSYIFLALTLA 287
Score = 31.6 bits (72), Expect = 0.17
Identities = 3/32 (9%), Positives = 7/32 (21%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + L+ + A C
Sbjct: 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHF 254
Score = 30.8 bits (70), Expect = 0.35
Identities = 5/24 (20%), Positives = 6/24 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAY 45
G+ L P AY
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAY 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 49.6 bits (119), Expect = 2e-07
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 10 GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G +N EA+ +Y AL + P + N+A
Sbjct: 213 GATLANG-----NRPQEALDAYNRALDINPGYVRVMYNMAVSYS 251
Score = 46.5 bits (111), Expect = 2e-06
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 10 GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G+L++ S N A + R A++L+PD + L L
Sbjct: 179 GVLYNLS-----NNYDSAAANLRRAVELRPDDAQLWNKLGATLA 217
Score = 46.5 bits (111), Expect = 2e-06
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
E AL++ P+ + +L
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183
Score = 45.7 bits (109), Expect = 3e-06
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
AI + A L P + LA
Sbjct: 69 EKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100
Score = 45.7 bits (109), Expect = 4e-06
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
N+ EA ++ + P+ +A+ +L
Sbjct: 35 ANLAEAALAFEAVCQAAPEREEAWRSLGLTQA 66
Score = 41.9 bits (99), Expect = 8e-05
Identities = 2/29 (6%), Positives = 7/29 (24%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAH 50
A + A+ ++ +
Sbjct: 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASR 282
Score = 40.4 bits (95), Expect = 2e-04
Identities = 7/40 (17%), Positives = 11/40 (27%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 61
N A+ S R L +P + + D
Sbjct: 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQ 142
Score = 30.0 bits (68), Expect = 0.54
Identities = 2/32 (6%), Positives = 8/32 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G++ + Y + + +
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSML 32
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 47.4 bits (114), Expect = 2e-07
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G+ EAI+ Y+ AL+L P +A+ NL +
Sbjct: 15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 46
Score = 46.6 bits (112), Expect = 4e-07
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G+ EAI+ Y+ AL+L P +A+ NL +
Sbjct: 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 114
Score = 46.6 bits (112), Expect = 4e-07
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G+ EAI+ Y+ AL+L P +A+ NL +
Sbjct: 49 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Score = 32.0 bits (74), Expect = 0.063
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 22 GNIPEAIQSYRTALKLKPD 40
G+ EAI+ Y+ AL+L P
Sbjct: 117 GDYDEAIEYYQKALELDPR 135
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 49.3 bits (118), Expect = 3e-07
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 10 GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G +N EA+ +YR AL+L+P + + NL
Sbjct: 258 GATLANG-----NQSEEAVAAYRRALELQPGYIRSRYNLGISCI 296
Score = 47.7 bits (114), Expect = 9e-07
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
AI + R L+LKPD A LA
Sbjct: 112 EQELLAISALRRCLELKPDNQTALMALAVSFT 143
Score = 46.6 bits (111), Expect = 2e-06
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 10 GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G+LF+ S G +A+ + AL ++P+ + L L
Sbjct: 224 GVLFNLS-----GEYDKAVDCFTAALSVRPNDYLLWNKLGATLA 262
Score = 45.4 bits (108), Expect = 5e-06
Identities = 5/36 (13%), Positives = 12/36 (33%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD 57
G EA++ + AL ++ + +
Sbjct: 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334
Score = 45.4 bits (108), Expect = 6e-06
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G++P A+ + A++ P +A+ L
Sbjct: 78 GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA 109
Score = 39.6 bits (93), Expect = 4e-04
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 16 SSFPSPGNIPEAIQSYRTALKLKPDFPDA--YCNLAHCLQ 53
S S E + + A++L P D C L
Sbjct: 189 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228
Score = 38.9 bits (91), Expect = 7e-04
Identities = 4/31 (12%), Positives = 8/31 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52
+A + R L+ P +
Sbjct: 146 SLQRQACEILRDWLRYTPAYAHLVTPAEEGA 176
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 49.5 bits (118), Expect = 3e-07
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
AI +L + P+ A L L+
Sbjct: 564 KIPGLAITHLHESLAISPNEIMASDLLKRALE 595
Score = 46.8 bits (111), Expect = 2e-06
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
VGI + I EA + + + + P F A+ AH
Sbjct: 377 LAVGIYYLCV-----NKISEARRYFSKSSTMDPQFGPAWIGFAHSFA 418
Score = 45.2 bits (107), Expect = 8e-06
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
GNI A + +++ L P L
Sbjct: 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAF 486
Score = 43.7 bits (103), Expect = 2e-05
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G +AI +Y TA +L Y L
Sbjct: 421 GEHDQAISAYTTAARLFQGTHLPYLFLGMQHM 452
Score = 42.5 bits (100), Expect = 5e-05
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
AI + L L + + + +A
Sbjct: 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYL 561
Score = 40.6 bits (95), Expect = 2e-04
Identities = 3/37 (8%), Positives = 8/37 (21%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDW 58
G + + P+ + + V
Sbjct: 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI 389
Score = 38.7 bits (90), Expect = 0.001
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + L++ P D Y L
Sbjct: 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLH 350
Score = 38.3 bits (89), Expect = 0.001
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAH 50
N A + Y+ AL + +A+ L
Sbjct: 214 SNFDRAKECYKEALMVDAKCYEAFDQLVS 242
Score = 37.1 bits (86), Expect = 0.003
Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 22 GNIPEAIQSYRTALKL-------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74
++ AI ++ AL L + + + NL H + + + + + + +
Sbjct: 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--- 545
Query: 75 QLDKNRLPSVHPHHSMLYPLTHEYRKAIAA 104
+VH +++Y AI
Sbjct: 546 ---STNDANVHTAIALVYLHKKIPGLAITH 572
Score = 37.1 bits (86), Expect = 0.003
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 6/79 (7%)
Query: 26 EAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRLPSVH 85
+ Y +++ D A L + + D A K++ ++D V+
Sbjct: 289 RRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL-----EIDPYN-LDVY 342
Query: 86 PHHSMLYPLTHEYRKAIAA 104
P H + E K
Sbjct: 343 PLHLASLHESGEKNKLYLI 361
Score = 27.1 bits (60), Expect = 5.7
Identities = 6/31 (19%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52
A L + + DA+ LA
Sbjct: 98 QQYKCAAFVGEKVLDITGNPNDAF-WLAQVY 127
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus
biogenesis, TPR, superhelix, protein binding; HET: MSE;
2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 48.8 bits (117), Expect = 3e-07
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
GN +A R AL++ P DA+ LA Q
Sbjct: 51 GNTEQAKVPLRKALEIDPSSADAHAALAVVFQ 82
Score = 46.5 bits (111), Expect = 1e-06
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+A + + +L+L + P +A L
Sbjct: 155 KKPAQAKEYFEKSLRLNRNQPSVALEMADLLY 186
Score = 46.1 bits (110), Expect = 2e-06
Identities = 7/32 (21%), Positives = 8/32 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
A + YR AL N L
Sbjct: 85 MEPKLADEEYRKALASDSRNARVLNNYGGFLY 116
Score = 41.5 bits (98), Expect = 8e-05
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 22 GNIPEAIQSYRTALK--LKPDFPDAYCNLAHCLQ 53
EA Q A + L P+ + NL
Sbjct: 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 152
Score = 38.0 bits (89), Expect = 0.001
Identities = 3/32 (9%), Positives = 6/32 (18%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
A Q Y + + +
Sbjct: 189 REYVPARQYYDLFAQGGGQNARSLLLGIRLAK 220
Score = 31.9 bits (73), Expect = 0.13
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 26 EAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
Q+ K + + DAY L
Sbjct: 21 MGDQNPLKTDKGRDEARDAYIQLGLGYL 48
Score = 27.2 bits (61), Expect = 3.4
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDA 44
+ A +L P +
Sbjct: 223 EDRDTAASYGLQLKRLYPGSLEY 245
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 48.5 bits (116), Expect = 4e-07
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 10 GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G +N EA+++Y AL+++P F + NL
Sbjct: 254 GATLANG-----DRSEEAVEAYTRALEIQPGFIRSRYNLGISCI 292
Score = 47.0 bits (112), Expect = 1e-06
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
N AI + + L+L+P+ A LA
Sbjct: 113 ENEQAAIVALQRCLELQPNNLKALMALAVSYT 144
Score = 47.0 bits (112), Expect = 2e-06
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 10 GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G+LF S G AI ++ AL ++P+ + L L
Sbjct: 220 GVLFHLS-----GEFNRAIDAFNAALTVRPEDYSLWNRLGATLA 258
Score = 44.7 bits (106), Expect = 9e-06
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G++P I A+ P +A+ L
Sbjct: 79 GDLPVTILFMEAAILQDPGDAEAWQFLGITQA 110
Score = 43.5 bits (103), Expect = 2e-05
Identities = 5/52 (9%), Positives = 15/52 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73
+ +A ++ + +K P + N + + L +
Sbjct: 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198
Score = 41.6 bits (98), Expect = 1e-04
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52
G EA+ ++ TAL L+ + +
Sbjct: 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAI 325
Score = 33.1 bits (76), Expect = 0.049
Identities = 6/41 (14%), Positives = 9/41 (21%), Gaps = 2/41 (4%)
Query: 15 NSSFPSPGNIPEAIQSYRTALKLKPDFPDA--YCNLAHCLQ 53
+ S + + Y A D D L
Sbjct: 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224
Score = 28.1 bits (63), Expect = 2.2
Identities = 2/24 (8%), Positives = 7/24 (29%)
Query: 26 EAIQSYRTALKLKPDFPDAYCNLA 49
A + + + + +A
Sbjct: 7 RAKAAVESDTEFWDKMQAEWEEMA 30
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 47.9 bits (115), Expect = 6e-07
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G + EA+ + + P DA+ N
Sbjct: 173 GMLDEALSQFAAVTEQDPGHADAFYNAGVTYA 204
Score = 47.1 bits (113), Expect = 9e-07
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
A+ + A++L + +A CL
Sbjct: 139 EQPKLALPYLQRAVELNENDTEARFQFGMCLA 170
Score = 46.7 bits (112), Expect = 1e-06
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ A+ Y AL+L AY +
Sbjct: 71 NELERALAFYDKALELDSSAATAYYGAGNVYV 102
Score = 46.7 bits (112), Expect = 1e-06
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
N +A++ A+ ++PD A
Sbjct: 207 ENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238
Score = 46.4 bits (111), Expect = 2e-06
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
EA + AL+ + D + L L
Sbjct: 105 EMYKEAKDMFEKALRAGMENGDLFYMLGTVLV 136
Score = 44.4 bits (106), Expect = 9e-06
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G+ +A +++ A++ + Y N A+ L
Sbjct: 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLS 68
Score = 31.3 bits (72), Expect = 0.18
Identities = 2/29 (6%), Positives = 5/29 (17%)
Query: 26 EAIQSYRTALKLKPDFPDAYCNLAHCLQI 54
+ + + L P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMG 31
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility
protein; secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 47.3 bits (113), Expect = 7e-07
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ +A S ALK P A+ A Q
Sbjct: 22 QDYRQATASIEDALKSDPKNELAWLVRAEIYQ 53
Score = 46.9 bits (112), Expect = 1e-06
Identities = 14/54 (25%), Positives = 20/54 (37%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75
G A + +L +P FP A+ LA + D + KK S V
Sbjct: 127 GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180
Score = 44.9 bits (107), Expect = 4e-06
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+A +S+R AL +KPD + N L
Sbjct: 56 KVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87
Score = 39.9 bits (94), Expect = 2e-04
Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 2/34 (5%)
Query: 22 GNIPEAIQSYRTALK--LKPDFPDAYCNLAHCLQ 53
E++ + AL P A N C
Sbjct: 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSA 124
Score = 32.2 bits (74), Expect = 0.078
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 26 EAIQSYRTALKLKPDFPDAY 45
A +Y +L+ +FP +
Sbjct: 197 NAQAAYEYEAQLQANFPYSE 216
Score = 31.5 bits (72), Expect = 0.13
Identities = 3/32 (9%), Positives = 8/32 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G + +A ++ L +
Sbjct: 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIA 192
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 47.8 bits (114), Expect = 1e-06
Identities = 10/32 (31%), Positives = 10/32 (31%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
N EA A KL P A LA
Sbjct: 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKL 460
Score = 44.7 bits (106), Expect = 1e-05
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52
+ +A++ Y A++L+ Y +A +
Sbjct: 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLV 416
Score = 43.2 bits (102), Expect = 3e-05
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G++ + ++ AL+LKPD+ A +
Sbjct: 53 GDLKKVVEMSTKALELKPDYSKVLLRRASANE 84
Score = 42.8 bits (101), Expect = 5e-05
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A + P+ P+ A L
Sbjct: 352 NKFDDCETLFSEAKRKFPEAPEVPNFFAEILT 383
Score = 42.0 bits (99), Expect = 8e-05
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
N +A + + A +L P+ Y LA
Sbjct: 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAY 349
Score = 41.7 bits (98), Expect = 1e-04
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI 54
+ E + ALKL + Y + I
Sbjct: 284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316
Score = 41.3 bits (97), Expect = 1e-04
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHC 51
+I EAI + + L + +
Sbjct: 463 EDIDEAITLFEESADLARTMEEKLQAITFA 492
Score = 37.0 bits (86), Expect = 0.003
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+AI+ Y AL+LK D P Y NL+ C
Sbjct: 20 KKYDDAIKYYNWALELKED-PVFYSNLSACYV 50
Score = 36.3 bits (84), Expect = 0.006
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ A + + A++L P ++Y +A +
Sbjct: 251 NDPLGAHEDIKKAIELFPRV-NSYIYMALIMA 281
Score = 32.0 bits (73), Expect = 0.13
Identities = 4/32 (12%), Positives = 7/32 (21%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
E + KLK + +
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural
genomics, PSI-2, protein structure initiative; 2.80A
{Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 45.0 bits (107), Expect = 1e-06
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
N A+ + ++ PD+ Y +L +
Sbjct: 21 DNASRALALFEELVETDPDYVGTYYHLGKLYE 52
Score = 34.9 bits (81), Expect = 0.003
Identities = 3/24 (12%), Positives = 9/24 (37%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAY 45
+AI +Y +++ +
Sbjct: 55 DRTDDAIDTYAQGIEVAREEGTQK 78
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 47.2 bits (113), Expect = 1e-06
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ P A+++Y +K P+ Y N A L
Sbjct: 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALA 184
Score = 44.9 bits (107), Expect = 5e-06
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ PEAI A++ P+F AY A
Sbjct: 187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 218
Score = 40.2 bits (95), Expect = 2e-04
Identities = 2/28 (7%), Positives = 7/28 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLA 49
A+++ A + +
Sbjct: 221 KEYASALETLDAARTKDAEVNNGSSARE 248
Score = 39.5 bits (93), Expect = 4e-04
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G AI + A++ + Y ++
Sbjct: 52 GEYETAISTLNDAVEQGREMRADYKVISKSFA 83
Score = 36.8 bits (86), Expect = 0.003
Identities = 2/32 (6%), Positives = 8/32 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
N + ++ + P+ +
Sbjct: 119 RNAEKELKKAEAEAYVNPEKAEEARLEGKEYF 150
Score = 36.0 bits (84), Expect = 0.005
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
EAI+ Y A +L D N A
Sbjct: 19 RQFDEAIEHYNKAWELHKDI-TYLNNRAAAEY 49
Score = 32.5 bits (75), Expect = 0.083
Identities = 4/32 (12%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
GN + + ++ + A L
Sbjct: 86 GNAYHKLGDLKKTIEYYQKSLTEH-RTADILT 116
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 44.6 bits (106), Expect = 2e-06
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
A+ R AL P + A+ L LQ
Sbjct: 33 EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ 64
Score = 40.0 bits (94), Expect = 7e-05
Identities = 3/46 (6%), Positives = 8/46 (17%)
Query: 26 EAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI 71
+ L D L + ++ +
Sbjct: 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF 48
Score = 30.0 bits (68), Expect = 0.21
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 22 GNIPEAIQSYRTALKLKPDFPD--AYCNLAHCLQ 53
G+ A Q++ + L D L L+
Sbjct: 67 GDRAGARQAWESGLAAAQSRGDQQVVKELQVFLR 100
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi
unknown function; 1.98A {Escherichia coli} SCOP:
a.118.8.1
Length = 275
Score = 46.5 bits (111), Expect = 2e-06
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G A + AL ++PD P+ + L L
Sbjct: 57 GLRALARNDFSQALAIRPDMPEVFNYLGIYLT 88
Score = 45.4 bits (108), Expect = 4e-06
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
GN A +++ + L+L P + A+ N L
Sbjct: 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 122
Score = 45.4 bits (108), Expect = 4e-06
Identities = 2/32 (6%), Positives = 4/32 (12%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ L + L
Sbjct: 195 TLMERLKADATDNTSLAEHLSETNFYLGKYYL 226
Score = 43.1 bits (102), Expect = 3e-05
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G++ A ++ A+ + L
Sbjct: 229 GDLDSATALFKLAVANNVHNFVEHRYALLELS 260
Score = 42.3 bits (100), Expect = 5e-05
Identities = 6/32 (18%), Positives = 8/32 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G A + P+ P L Q
Sbjct: 125 GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ 156
Score = 30.0 bits (68), Expect = 0.59
Identities = 1/32 (3%), Positives = 4/32 (12%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ Q + +
Sbjct: 23 VILARMEQILASRALTDDERAQLLYERGVLYD 54
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 44.7 bits (106), Expect = 2e-06
Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 10/85 (11%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
G +A+QSY + + P + A C + D E+ A L
Sbjct: 66 GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYS-----ARALAAA-- 118
Query: 82 PSVHPHHSMLYPLTHEYRKAIAARH 106
P H L +A+ AR
Sbjct: 119 ---QPAHEALAARAGAMLEAVTARK 140
Score = 42.4 bits (100), Expect = 1e-05
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 60
G +A + ++ L + L C Q + +
Sbjct: 32 GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQ 70
Score = 32.0 bits (73), Expect = 0.068
Identities = 10/75 (13%), Positives = 17/75 (22%), Gaps = 6/75 (8%)
Query: 30 SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRLPSVHPHHS 89
+ L D + L W D + + L LD
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALC-----MLDHYD-ARYFLGLG 59
Query: 90 MLYPLTHEYRKAIAA 104
Y +A+ +
Sbjct: 60 ACRQSLGLYEQALQS 74
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein
response; 2.51A {Mus musculus}
Length = 359
Score = 46.1 bits (110), Expect = 3e-06
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 60
G A+ + LK DF A H L +
Sbjct: 51 GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDE 89
Score = 46.1 bits (110), Expect = 3e-06
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDW----TDYE 62
EAI+ L+++PD +A + A I + DYE
Sbjct: 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 330
Score = 45.7 bits (109), Expect = 4e-06
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G +AI + A KLK D +A+ ++
Sbjct: 168 GEPRKAISDLKAASKLKSDNTEAFYKISTLYY 199
Score = 41.9 bits (99), Expect = 6e-05
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G + +A+ + A+ PD AY A
Sbjct: 17 GQLADALSQFHAAVDGDPDNYIAYYRRATVFL 48
Score = 41.5 bits (98), Expect = 1e-04
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
EAIQ Y A + + L +
Sbjct: 320 EMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351
Score = 41.1 bits (97), Expect = 1e-04
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI 54
G+ ++ R LKL D + + ++
Sbjct: 202 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234
Score = 41.1 bits (97), Expect = 1e-04
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 22 GNIPEAIQSYRTALKLKPDFPD----AYCNLAHCLQ 53
G +A Y + +K +P + + + HC
Sbjct: 248 GRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283
Score = 39.9 bits (94), Expect = 4e-04
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ AI L++ + A C
Sbjct: 134 ADYTAAITFLDKILEVCVWDAELRELRAECFI 165
Score = 38.4 bits (90), Expect = 0.001
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYE 62
G + EA ++ LK P + + ++
Sbjct: 85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRS 125
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 45.7 bits (109), Expect = 3e-06
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYE---ARMKKLVSIVAEQLDK 78
+A S+ L+LKP+ Y A T +KL+ + A K
Sbjct: 156 KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215
Query: 79 NRLPSVHPHHSM--LYPLTHEYRKAIAA 104
+ + + + Y + + KA AA
Sbjct: 216 YKDELIEANEYIAYYYTINRDKVKADAA 243
Score = 44.2 bits (105), Expect = 1e-05
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
GN P AIQ ++ P + L
Sbjct: 122 GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153
Score = 43.4 bits (103), Expect = 2e-05
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ +A +++ L L P A L L+
Sbjct: 235 RDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266
Score = 43.0 bits (102), Expect = 2e-05
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G AIQ Y+ A+ D Y +
Sbjct: 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY 119
Score = 39.6 bits (93), Expect = 4e-04
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
F+ + N EAI+ + K + P Y A C
Sbjct: 6 EFRYADFLFKN-----NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY 48
Score = 35.7 bits (83), Expect = 0.006
Identities = 3/35 (8%), Positives = 8/35 (22%), Gaps = 3/35 (8%)
Query: 22 GNIPEAI---QSYRTALKLKPDFPDAYCNLAHCLQ 53
A ++Y + + + L
Sbjct: 51 AKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 46.2 bits (110), Expect = 3e-06
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI---------V 72
G A+ ++LK DF A H L + E KK++
Sbjct: 74 GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133
Query: 73 AEQLDKNRLPSVHPHHSMLYPLTHEYRKAIAA 104
QL K+ ++ + +Y AIA
Sbjct: 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165
Score = 43.1 bits (102), Expect = 3e-05
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G +AI + A KLK D +A+ ++
Sbjct: 191 GEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222
Score = 42.7 bits (101), Expect = 4e-05
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 60
EAI+ L+++PD +A + A I + +
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDE 347
Score = 40.4 bits (95), Expect = 2e-04
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G + +A+ + A+ PD AY A
Sbjct: 40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFL 71
Score = 40.1 bits (94), Expect = 3e-04
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKK 67
G+ ++ R LKL D + + ++ E ++
Sbjct: 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 270
Score = 39.3 bits (92), Expect = 5e-04
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G+ AI L++ + A C
Sbjct: 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFI 188
Score = 38.5 bits (90), Expect = 0.001
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 22 GNIPEAIQSYRTALKLKPDFPD----AYCNLAHCLQ 53
G +A Y + +K +P + + + HC
Sbjct: 271 GRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFS 306
Score = 37.4 bits (87), Expect = 0.002
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
EAIQ Y TA + + L +
Sbjct: 343 EMYDEAIQDYETAQEHNENDQQIREGLEKAQR 374
Score = 29.3 bits (66), Expect = 0.98
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 22 GNIPEAIQSYR-TALKLKPDFPDAYCNLAHCLQ 53
E I++YR AL+ PD +
Sbjct: 394 AKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEK 426
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 4e-06
Identities = 35/254 (13%), Positives = 67/254 (26%), Gaps = 93/254 (36%)
Query: 2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 61
+ F ++ + FP +IP + L ++ W D
Sbjct: 371 YRKMFDRLSV------FPPSAHIPTIL-----------------------LSLI--WFDV 399
Query: 62 EAR-----MKKLV--SIVAEQLDKNRLPSVHPHHSMLYPLTHEYRKAIAARHANLCLLKA 114
+ KL S+V +Q ++ + S+ +Y + A H ++
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTI-SIP----SIYLELKVKLENEYALHRSI----- 449
Query: 115 MRAKVWQARTESPLFCVQRYAQR----LESLYKVMWDRYSQNLPVTHITQAKIAREAEHF 170
V Y + L D+Y + H+ + F
Sbjct: 450 ----------------VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 171 ----LDL---------SQVPCNGKAAD-------RIHKDGIHILVNMNGYTKGARNEI-F 209
LD N + + +K +I N Y + + F
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP--YICDNDPKYERLVNAILDF 551
Query: 210 ALRPAP--IQSSFT 221
+ I S +T
Sbjct: 552 LPKIEENLICSKYT 565
Score = 28.7 bits (63), Expect = 1.9
Identities = 25/201 (12%), Positives = 59/201 (29%), Gaps = 47/201 (23%)
Query: 30 SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS------IVAEQLDKNRLPS 83
Y+ + F DA+ + C D + K ++S I+ + +
Sbjct: 17 QYK---DILSVFEDAFVDNFDC-------KDVQDMPKSILSKEEIDHIIMSKDAVSGT-- 64
Query: 84 VHPHHSMLYPLTHEYRKAIAARHANLCLLKAMR--AKVWQARTESPLFCVQRYAQRLESL 141
L+ ++ + + L + + P + Y ++ + L
Sbjct: 65 -----LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 142 YKVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHILVNMNGYT 201
Y +Q +++ R + +L L Q + A + ++ + G
Sbjct: 120 YND-----NQVFAKYNVS-----RL-QPYLKLRQALLELRPAKNV------LIDGVLGSG 162
Query: 202 KG--ARNEIFALRPAPIQSSF 220
K A + +Q
Sbjct: 163 KTWVALD---VCLSYKVQCKM 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics,
unknown function, PSI-2, protein structure initiative;
NMR {Methanococcus maripaludis}
Length = 112
Score = 43.2 bits (103), Expect = 4e-06
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
GN E+I + A++L P+ + L
Sbjct: 20 GNYTESIDLFEKAIQLDPEESKYWLMKGKALY 51
Score = 36.7 bits (86), Expect = 0.001
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 26 EAIQSYRTALKLKPDF--PDAYCNLAHCLQ 53
EA+ Y + + D D + A L+
Sbjct: 58 EAVDCYNYVINVIEDEYNKDVWAAKADALR 87
Score = 30.5 bits (70), Expect = 0.15
Identities = 2/20 (10%), Positives = 4/20 (20%)
Query: 22 GNIPEAIQSYRTALKLKPDF 41
+ KL+
Sbjct: 90 EGKEVEAEIAEARAKLEHHH 109
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 44.7 bits (105), Expect = 9e-06
Identities = 9/89 (10%), Positives = 29/89 (32%), Gaps = 4/89 (4%)
Query: 20 SPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYE----ARMKKLVSIVAEQ 75
++ A + ++ P+F A A + + A + + +
Sbjct: 211 DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270
Query: 76 LDKNRLPSVHPHHSMLYPLTHEYRKAIAA 104
+ N L ++ ++ + + ++ A
Sbjct: 271 PELNNLSIIYQIKAVSALVKGKTDESYQA 299
Score = 32.4 bits (73), Expect = 0.11
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAY 45
G EA +Y TA L+P Y
Sbjct: 324 GMNREAADAYLTAFNLRPGANTLY 347
Score = 30.1 bits (67), Expect = 0.59
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G E+ Q+ T + L+ + Y L +
Sbjct: 291 GKTDESYQAINTGIDLEMSW-LNYVLLGKVYE 321
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 44.5 bits (105), Expect = 1e-05
Identities = 14/96 (14%), Positives = 35/96 (36%), Gaps = 13/96 (13%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHC-----LQIVCDWTDYEARMKKLVSIVAEQL 76
+AI+ + AL+ P+ +C + C Q++ + +KL+ ++ +
Sbjct: 261 DEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAV 320
Query: 77 DK-NRLPSVHPHHSM-------LYPLTHEYRKAIAA 104
+ + + L+ L +Y +A
Sbjct: 321 AHLKKADEANDNLFRVCSILASLHALADQYEEAEYY 356
Score = 44.5 bits (105), Expect = 1e-05
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
AI R A++L PD LA L + + + E +KLV A + +
Sbjct: 189 PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEE-ALEKAPG-V 246
Query: 82 PSVHPHHSMLYPLTHEYRKAIAA 104
V + Y E KAI
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIEL 269
Score = 44.2 bits (104), Expect = 2e-05
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYE 62
A + AL+ KP P+ LA + +W +
Sbjct: 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQ 192
Score = 42.6 bits (100), Expect = 5e-05
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNL 48
+ +A + L+ P A
Sbjct: 444 EKMQQADEDSERGLESGSLIPSASSWN 470
Score = 30.7 bits (69), Expect = 0.38
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAY 45
+AI + +K+ +
Sbjct: 386 KCEDKAIHHFIEGVKINQKSREKE 409
Score = 29.5 bits (66), Expect = 0.78
Identities = 15/107 (14%), Positives = 27/107 (25%), Gaps = 26/107 (24%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDA------YCNLAH---------------CLQIVCDWTD 60
EA ++ + Y N ++I +
Sbjct: 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE 407
Query: 61 YEARMKKLVSIVAEQLDKNRLPSVHPHHSML---YPLTHEYRKAIAA 104
E KL I +L KN + +L L + ++A
Sbjct: 408 KEKMKDKLQKIAKMRLSKN--GADSEALHVLAFLQELNEKMQQADED 452
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 42.9 bits (101), Expect = 1e-05
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52
+A Y A L + + C
Sbjct: 84 EQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114
Score = 40.2 bits (94), Expect = 1e-04
Identities = 9/32 (28%), Positives = 10/32 (31%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G I EA +R D LA Q
Sbjct: 50 GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ 81
Score = 25.9 bits (57), Expect = 8.4
Identities = 2/24 (8%), Positives = 7/24 (29%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAY 45
+A + + ++ D
Sbjct: 118 KAPLKAKECFELVIQHSNDEKLKI 141
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 41.7 bits (98), Expect = 2e-05
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
AI + A L P + LA
Sbjct: 65 EKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96
Score = 38.6 bits (90), Expect = 2e-04
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
N+ EA ++ + +P+ +A+ +L
Sbjct: 31 ANLAEAALAFEAVCQKEPEREEAWRSLGLTQA 62
Score = 29.3 bits (66), Expect = 0.45
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 22 GNIPEAIQSYRTALKLKPDFPD 43
N A+ S R L +P +
Sbjct: 99 HNANAALASLRAWLLSQPQYEQ 120
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 42.4 bits (100), Expect = 3e-05
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
G +A++ Y L+L+ D A L +
Sbjct: 102 GQEKDALRMYEKILQLEADNLAANIFLGNYYY 133
Score = 42.0 bits (99), Expect = 5e-05
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
N +A Y+ L+ P+ D A
Sbjct: 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQV 99
Score = 34.7 bits (80), Expect = 0.013
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAY 45
G +A+ +R + L D + Y
Sbjct: 18 GQNGQAVSYFRQTIALNIDRTEMY 41
Score = 27.4 bits (61), Expect = 3.2
Identities = 5/28 (17%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLA 49
+A S + + P +A L
Sbjct: 171 TRYEKARNSLQKVILRFPS-TEAQKTLD 197
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 42.4 bits (100), Expect = 6e-05
Identities = 5/32 (15%), Positives = 8/32 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L P A + Q
Sbjct: 290 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 321
Score = 42.0 bits (99), Expect = 8e-05
Identities = 4/32 (12%), Positives = 7/32 (21%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L P A +
Sbjct: 426 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGRP 457
Score = 42.0 bits (99), Expect = 8e-05
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L P+ A + Q
Sbjct: 358 ETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQ 389
Score = 41.7 bits (98), Expect = 1e-04
Identities = 5/32 (15%), Positives = 8/32 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L P A + Q
Sbjct: 324 ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQ 355
Score = 41.3 bits (97), Expect = 1e-04
Identities = 5/32 (15%), Positives = 8/32 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L P A + Q
Sbjct: 222 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 253
Score = 41.3 bits (97), Expect = 1e-04
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L P+ A + Q
Sbjct: 392 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQ 423
Score = 41.3 bits (97), Expect = 1e-04
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L P A + + Q
Sbjct: 256 ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQ 287
Score = 40.1 bits (94), Expect = 4e-04
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L P+ A + Q
Sbjct: 120 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQ 151
Score = 39.7 bits (93), Expect = 4e-04
Identities = 5/32 (15%), Positives = 8/32 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L P A + Q
Sbjct: 188 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 219
Score = 38.6 bits (90), Expect = 0.001
Identities = 5/32 (15%), Positives = 8/32 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L P A + Q
Sbjct: 86 ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQ 117
Score = 37.0 bits (86), Expect = 0.003
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L P+ A + Q
Sbjct: 154 ETVQALLPVLCQAHGLTPEQVVAIASNGGGKQ 185
Score = 32.0 bits (73), Expect = 0.15
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 22 GNIPEAIQSYRTAL-----KLKPDFPDAYCNLAHCLQ 53
EA+ ++R AL L P+ A + Q
Sbjct: 47 VTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQ 83
Score = 29.3 bits (66), Expect = 1.2
Identities = 6/28 (21%), Positives = 8/28 (28%), Gaps = 1/28 (3%)
Query: 22 GNIPEAIQSYRTALKLKP-DFPDAYCNL 48
+I + AL D A L
Sbjct: 460 ESIVAQLSRPDPALAALTNDHLVALACL 487
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 39.3 bits (92), Expect = 1e-04
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 17/82 (20%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
G +A +K P+ A L + YE ++ L+ I+AE
Sbjct: 41 GEYRKAEAVLANGVKQFPNHQALRVFYAMVLY---NLGRYEQGVELLLKIIAE------- 90
Query: 82 PSVHPHHSMLYPLTHEYRKAIA 103
+ Y++AI
Sbjct: 91 ---TSDDETI----QSYKQAIL 105
Score = 38.2 bits (89), Expect = 4e-04
Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 9/85 (10%)
Query: 22 GNIPEAIQSYRTALKLK---PDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDK 78
G +A+ Y A+ D + Y L + + ++ EA + V
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH--- 60
Query: 79 NRLPSVHPHHSMLYPLTHEYRKAIA 103
++ ++M+ Y + +
Sbjct: 61 ---QALRVFYAMVLYNLGRYEQGVE 82
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 39.5 bits (92), Expect = 2e-04
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 60
G +A ++ L + L C Q + +
Sbjct: 35 GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDL 73
Score = 33.0 bits (75), Expect = 0.032
Identities = 15/124 (12%), Positives = 31/124 (25%), Gaps = 10/124 (8%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
G + + ++ D + +LA + D + L LD
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALC-----VLDHYD- 54
Query: 82 PSVHPHHSMLYPLTHEYRKAIAA-RHANLCLLKAMRAKVWQARTESPLFCVQRYAQRLES 140
+Y AI + + ++ + E L A+
Sbjct: 55 SRFFLGLGACRQAMGQYDLAIHSYSYG--AVMDIXEPRFPFHAAEC-LLQXGELAEAESG 111
Query: 141 LYKV 144
L+
Sbjct: 112 LFLA 115
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center
for structu genomics, MCSG, tetratricopeptide repeat
domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 38.4 bits (90), Expect = 3e-04
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ +A Y A++L P Y N A
Sbjct: 22 KDFEKAHVHYDKAIELDPSNITFYNNKAAVYF 53
Score = 28.4 bits (64), Expect = 1.0
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHC 51
++ A+Q + +L D P+ +
Sbjct: 97 NDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125
Score = 27.6 bits (62), Expect = 1.5
Identities = 5/39 (12%), Positives = 11/39 (28%), Gaps = 7/39 (17%)
Query: 22 GNIPEAIQSYRTALKLKPDFPD-------AYCNLAHCLQ 53
E +Q A+++ + A + Q
Sbjct: 56 KKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ 94
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 39.0 bits (90), Expect = 6e-04
Identities = 16/83 (19%), Positives = 22/83 (26%), Gaps = 16/83 (19%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
G A + AL P+ NL Q + + R ++L
Sbjct: 214 GRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY------------LSQL 261
Query: 82 PSVHPHHSMLYPLTHEYRKAIAA 104
H H P EYR
Sbjct: 262 KDAHRSH----PFIKEYRAKEND 280
Score = 32.0 bits (72), Expect = 0.10
Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 1/98 (1%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLD-KNR 80
+ +A ++ A C W E +++ + + +
Sbjct: 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239
Query: 81 LPSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAK 118
L + H +T+ Y + H + +K RAK
Sbjct: 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAK 277
Score = 28.9 bits (64), Expect = 1.2
Identities = 15/136 (11%), Positives = 31/136 (22%), Gaps = 27/136 (19%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKN-R 80
+ A + + D A +++ I E DK
Sbjct: 144 DRLDLARKELKKMQDQDEDATLTQLATAWVS-----LAAGGEKLQDAYYIFQEMADKCSP 198
Query: 81 LPSVHPHHSMLYPLTHEYRKAIAAR-------------HANLCLLKAMRAKVWQARTESP 127
+ + + + A NL +L K +
Sbjct: 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV----- 253
Query: 128 LFCVQRYAQRLESLYK 143
RY +L+ ++
Sbjct: 254 ---TNRYLSQLKDAHR 266
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha,
GFT-structural genomics, PSI-2, protein structure
initiative; NMR {Bacteroides fragilis}
Length = 99
Score = 37.0 bits (86), Expect = 6e-04
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAY 45
G+ +A+ +Y++A++L PD P
Sbjct: 49 GDWQKALNNYQSAIELNPDSPALQ 72
Score = 36.2 bits (84), Expect = 0.001
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 22 GNIPEAIQSYRTALKLKPDFPD-AYCNLAHCLQ 53
G+I A+Q+ L+ +P D AY + + +
Sbjct: 14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYR 46
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle,
phagocyte oxidase factor, SH3 domain, repeat, TPR
repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP:
a.118.8.1 PDB: 1wm5_A 1e96_B*
Length = 213
Score = 38.5 bits (90), Expect = 7e-04
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
N+ EA +++ ++ AY
Sbjct: 51 KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82
Score = 30.8 bits (70), Expect = 0.22
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLA 49
+A + A +K + + + A
Sbjct: 135 EEWKKAEEQLALATSMKSEPRHSKIDKA 162
Score = 29.3 bits (66), Expect = 0.77
Identities = 2/32 (6%), Positives = 9/32 (28%), Gaps = 3/32 (9%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ A+ ++ ++ N+
Sbjct: 20 KDWKGALDAFS---AVQDPHSRICFNIGCMYT 48
Score = 27.8 bits (62), Expect = 2.7
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 22 GNIPEAIQSYRTALK-LKPDFPDAYCNLAHCLQ 53
AI+ + AL L+ + Y L +
Sbjct: 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK 117
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 37.2 bits (87), Expect = 0.001
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52
N A+ Y A++L P +CN A
Sbjct: 26 ENFEAAVHFYGKAIELNPANAVYFCNRAAAY 56
Score = 34.9 bits (81), Expect = 0.005
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 11 ILFSN--SSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52
+ F N +++ GN A+Q A+ + P + AY + L
Sbjct: 47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90
Score = 34.9 bits (81), Expect = 0.006
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIV 55
EA+ Y+ AL+L PD NL +
Sbjct: 94 NKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 38.1 bits (88), Expect = 0.002
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L PD A + Q
Sbjct: 308 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQ 339
Score = 37.7 bits (87), Expect = 0.002
Identities = 4/32 (12%), Positives = 8/32 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L + A + Q
Sbjct: 681 ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQ 712
Score = 37.3 bits (86), Expect = 0.003
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L PD A + Q
Sbjct: 342 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 373
Score = 37.3 bits (86), Expect = 0.003
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L PD A + Q
Sbjct: 240 ETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQ 271
Score = 36.5 bits (84), Expect = 0.005
Identities = 4/32 (12%), Positives = 7/32 (21%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L A + Q
Sbjct: 579 ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQ 610
Score = 36.5 bits (84), Expect = 0.005
Identities = 5/32 (15%), Positives = 8/32 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L P A + Q
Sbjct: 206 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQ 237
Score = 35.8 bits (82), Expect = 0.011
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L PD A + Q
Sbjct: 647 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 678
Score = 35.4 bits (81), Expect = 0.014
Identities = 5/83 (6%), Positives = 17/83 (20%), Gaps = 6/83 (7%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
+ + L P A + Q + + + + +Q
Sbjct: 443 ETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQ------ 496
Query: 82 PSVHPHHSMLYPLTHEYRKAIAA 104
+ ++ +
Sbjct: 497 VVAIASNIGGKQALATVQRLLPV 519
Score = 35.0 bits (80), Expect = 0.016
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L PD A + Q
Sbjct: 545 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 576
Score = 35.0 bits (80), Expect = 0.016
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L PD A + Q
Sbjct: 511 ATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 542
Score = 35.0 bits (80), Expect = 0.018
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L PD A + Q
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQ 305
Score = 34.6 bits (79), Expect = 0.024
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L PD A + Q
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQ 440
Score = 33.9 bits (77), Expect = 0.044
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L PD A + Q
Sbjct: 715 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 746
Score = 31.9 bits (72), Expect = 0.16
Identities = 5/28 (17%), Positives = 8/28 (28%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLA 49
+ + A L PD A +
Sbjct: 376 ETVQRLLPVLCQAHGLTPDQVVAIASNG 403
Score = 30.8 bits (69), Expect = 0.38
Identities = 5/32 (15%), Positives = 8/32 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L P A + Q
Sbjct: 613 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQ 644
Score = 30.0 bits (67), Expect = 0.66
Identities = 5/32 (15%), Positives = 8/32 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ + A L P A + Q
Sbjct: 749 ETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQ 780
Score = 26.9 bits (59), Expect = 6.4
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 5/33 (15%)
Query: 26 EAIQSYRTAL-----KLKPDFPDAYCNLAHCLQ 53
EA+ + R AL L P A + Q
Sbjct: 171 EAVHASRNALTGAPLNLTPAQVVAIASNNGGKQ 203
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor,
protein BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 34.6 bits (80), Expect = 0.005
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52
G EA+ Y + +P P Y N A L
Sbjct: 18 GLYREAVHCYDQLITAQPQNPVGYSNKAMAL 48
Score = 28.8 bits (65), Expect = 0.64
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52
G +AIQ + L+
Sbjct: 52 GEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 35.3 bits (81), Expect = 0.006
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52
G +A+ +T D A CL
Sbjct: 20 GEHAQALNVIQTLSDELQSRGDVKLAKADCL 50
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome
C biogenesis, O157:H7 EDL933, formate- nitrite
reductase complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 35.2 bits (81), Expect = 0.007
Identities = 8/60 (13%), Positives = 23/60 (38%)
Query: 18 FPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLD 77
F S N +Q+ + ++ P + + L D+++ ++ + + E +
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Score = 32.9 bits (75), Expect = 0.036
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52
+ ++ +YR AL+L+ + + Y LA L
Sbjct: 58 NDYSNSLLAYRQALQLRGENAELYAALATVL 88
Score = 31.0 bits (70), Expect = 0.19
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 25 PEAIQSYRTALKLKPDFPDAYCNLA 49
+ AL L + A LA
Sbjct: 98 AQTRAMIDKALALDSNEITALMLLA 122
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo
sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 33.8 bits (78), Expect = 0.014
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHC 51
+ A++ Y A +L P N A
Sbjct: 18 KDFDTALKHYDKAKELDPTNMTYITNQAAV 47
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 33.4 bits (77), Expect = 0.018
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHC 51
+ P A+++Y +K P+ Y N A
Sbjct: 18 SDWPNAVKAYTEMIKRAPEDARGYSNRAAA 47
Score = 28.4 bits (64), Expect = 0.90
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52
+ PEAI A++ P+F AY A
Sbjct: 52 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82
Score = 25.7 bits (57), Expect = 7.7
Identities = 2/27 (7%), Positives = 7/27 (25%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNL 48
A+++ A + +
Sbjct: 86 KEYASALETLDAARTKDAEVNNGSSAR 112
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2,
SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus
fumigatus}
Length = 164
Score = 32.8 bits (75), Expect = 0.043
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 11 ILFSN--SSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52
I SN +++ + G +A + A + P + A+ L
Sbjct: 46 IYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89
Score = 32.4 bits (74), Expect = 0.058
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHC 51
+AI Y AL + P P N A
Sbjct: 25 KEYSKAIDLYTQALSIAPANPIYLSNRAAA 54
Score = 28.5 bits (64), Expect = 1.2
Identities = 2/26 (7%), Positives = 9/26 (34%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCN 47
+ A ++Y ++ + +
Sbjct: 93 ADYKGAKEAYEKGIEAEGNGGSDAMK 118
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 32.2 bits (74), Expect = 0.045
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHC 51
G+ P+A++ Y A+K P Y N A C
Sbjct: 30 GDYPQAMKHYTEAIKRNPKDAKLYSNRAAC 59
Score = 31.1 bits (71), Expect = 0.14
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 11 ILFSN--SSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52
L+SN + + A++ ++L+P F Y A L
Sbjct: 51 KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94
Score = 29.5 bits (67), Expect = 0.44
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ +A+ Y+ AL L +A C+
Sbjct: 98 KDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.045
Identities = 33/143 (23%), Positives = 51/143 (35%), Gaps = 41/143 (28%)
Query: 79 NR-LPSVHPHHS-MLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQRYAQ 136
NR LP P HS +L P + K + + + K ++ V+ S L + +
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN-AKDIQIPVYDTFDGSDL---RVLSG 473
Query: 137 RL-ESLYK------VMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADRIHKD 189
+ E + V W+ + THI LD P G A+
Sbjct: 474 SISERIVDCIIRLPVKWET-TTQFKATHI------------LDFG--P--GGAS------ 510
Query: 190 GIHILVNMN--GYTKGARNEIFA 210
G+ +L + N G G R I A
Sbjct: 511 GLGVLTHRNKDG--TGVR-VIVA 530
Score = 28.9 bits (64), Expect = 1.8
Identities = 40/299 (13%), Positives = 72/299 (24%), Gaps = 112/299 (37%)
Query: 7 FKVGILFSN------SSFPSPGNIPEA-----IQSYRTALKL--KPD--------FPDAY 45
F+ L N + + I++Y TA + +P F
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 46 CNLAHC----------------LQIVCDWTDYEARMKKLVSIVAEQLDKNRLPSVHPHHS 89
A L+ + + Y + L+ AE L + L
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDL--YQTYHVLVGDLIKFSAETL--SELIRTTLDAE 206
Query: 90 MLYP--------LTH-------EYRKAIA-----------ARHANLCLLKAMRAKVWQAR 123
++ L + +Y +I A + L ++
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 124 TESPLFCVQR--------YAQRLESLYKVM--------W--DRYSQNLPVTHITQAKIAR 165
+ Q ES + + + R + P T + + +
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 166 EAEHF------------LDLSQV-----PCNGKAADRIHKDGIHI-LVNMNGYTKGARN 206
E+ L QV N + I LVN GA+N
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ---VEISLVN------GAKN 376
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center
for structu genomics, MCSG, tetratricopeptide repeat
domain; 1.60A {Caenorhabditis elegans}
Length = 126
Score = 31.8 bits (73), Expect = 0.069
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHC 51
G+ P A++ Y A+K P+ Y N A C
Sbjct: 27 GDYPTAMRHYNEAVKRDPENAILYSNRAAC 56
Score = 29.1 bits (66), Expect = 0.47
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 11 ILFSNSS--FPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 60
IL+SN + A+ T ++L F Y A CL + +W+
Sbjct: 48 ILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSK 99
Score = 27.6 bits (62), Expect = 2.0
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+A ++Y AL++ P +A + +CL+
Sbjct: 95 REWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 31.4 bits (72), Expect = 0.086
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHC 51
GNI +A+Q Y A+KL P Y N +
Sbjct: 18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAA 47
Score = 31.0 bits (71), Expect = 0.090
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 11 ILFSNSS--FPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+L+SN S + G+ +A + + LKPD+ Y A L+
Sbjct: 39 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83
Score = 27.5 bits (62), Expect = 1.6
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHC 51
EA ++Y LK + + P L +
Sbjct: 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin
ligase, ligase-chaperone complex; 1.54A {Mus musculus}
PDB: 3q47_B 3q4a_B*
Length = 137
Score = 31.5 bits (72), Expect = 0.087
Identities = 10/30 (33%), Positives = 11/30 (36%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHC 51
PEA Y A+ P Y N A C
Sbjct: 23 RKYPEAAACYGRAITRNPLVAVYYTNRALC 52
Score = 25.7 bits (57), Expect = 7.1
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52
+A+ R AL+L A+ L C
Sbjct: 57 QQPEQALADCRRALELDGQSVKAHFFLGQCQ 87
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone,
E3 ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 32.2 bits (73), Expect = 0.11
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDW 58
PEA Y A+ P Y N A C +
Sbjct: 18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP 54
Score = 28.3 bits (63), Expect = 1.8
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 11 ILFSN--SSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 60
+ ++N + +A+ R AL+L A+ L C + + +
Sbjct: 39 VYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDE 90
>1a17_A Serine/threonine protein phosphatase 5; hydrolase,
protein-protein interactions, TPR, S helix; 2.45A {Homo
sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Length = 166
Score = 31.6 bits (72), Expect = 0.11
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHC 51
+ AI+ Y A++L P Y N +
Sbjct: 27 KDYENAIKFYSQAIELNPSNAIYYGNRSLA 56
Score = 29.3 bits (66), Expect = 0.58
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIV 55
G A++ Y T +K+KP DA C +IV
Sbjct: 95 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 128
Score = 29.3 bits (66), Expect = 0.70
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 11 ILFSN--SSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52
I + N ++ A+ A++L + Y A
Sbjct: 48 IYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 30.3 bits (69), Expect = 0.39
Identities = 18/109 (16%), Positives = 29/109 (26%), Gaps = 26/109 (23%)
Query: 22 GNIPEAIQSYRTALKL------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75
GN EAI + L + K A NL + +
Sbjct: 97 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH--------------------AK 136
Query: 76 LDKNRLPSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQART 124
P + + + A+ NL L+ A+ + Q R
Sbjct: 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRA 185
Score = 26.4 bits (59), Expect = 7.3
Identities = 5/41 (12%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 22 GNIPEAIQSYRTALKL----KPDFPDAYCNLAHCLQIVCDW 58
G+ + + A+++ Y L + + D+
Sbjct: 19 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 59
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 30.4 bits (69), Expect = 0.49
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 23/99 (23%)
Query: 15 NSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74
N F + + AI+ Y A++L P Y N + R + +
Sbjct: 14 NDYFKA-KDYENAIKFYSQAIELNPSNAIYYGNRSLA----------YLRTECYGYALG- 61
Query: 75 QLDKNRLPSVHPHHSMLYPLTHEYRKAIAARHANLCLLK 113
D R + + Y YR+A +N+ L K
Sbjct: 62 --DATRAIELDKKYIKGY-----YRRAA----SNMALGK 89
Score = 27.7 bits (62), Expect = 3.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 16 SSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIV 55
+S + G A++ Y T +K+KP DA C +IV
Sbjct: 82 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 121
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 29.7 bits (66), Expect = 0.50
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 20 SPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
+ I EAI + AL + P +A + +
Sbjct: 58 AKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 29.2 bits (66), Expect = 0.62
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 22 GNIPEAIQSYRTALKLKPDFPD---AYCNLAHC 51
G+ A+ +Y AL L D + N A C
Sbjct: 42 GDYGGALAAYTQALGLDATPQDQAVLHRNRAAC 74
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; 2.30A
{Bordetella pertussis}
Length = 173
Score = 29.0 bits (66), Expect = 0.87
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 4/22 (18%)
Query: 47 NLAHCLQIVCDWTDYEARMKKL 68
N+A LQ+ +E R L
Sbjct: 156 NVAQALQLAA----WELRYALL 173
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 29.3 bits (65), Expect = 1.1
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 11 ILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
++ + + + + +Q +KL P A+ L LQ
Sbjct: 243 VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ 285
Score = 28.9 bits (64), Expect = 1.3
Identities = 3/38 (7%), Positives = 15/38 (39%)
Query: 23 NIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 60
++ E + ++ +P + + ++ + D +
Sbjct: 147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQ 184
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 29.2 bits (65), Expect = 1.1
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWT 59
G + +A++ A+K P + L I D+
Sbjct: 11 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFE 48
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 28.4 bits (64), Expect = 1.4
Identities = 12/111 (10%), Positives = 31/111 (27%), Gaps = 9/111 (8%)
Query: 22 GNIPEAIQSYRTALKLKPDFPD------AYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75
EA S++ + D A + ++ +W + +
Sbjct: 40 DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEEREL-LAS 98
Query: 76 LDKNRLPSVHPHHSM--LYPLTHEYRKAIAARHANLCLLKAMRAKVWQART 124
L ++ L + + + + + A +L + +V A
Sbjct: 99 LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 28.4 bits (64), Expect = 1.7
Identities = 13/107 (12%), Positives = 35/107 (32%), Gaps = 4/107 (3%)
Query: 22 GNIPEAIQSYRTALKL----KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLD 77
G+ + + A+++ Y L + + D+ +++ D
Sbjct: 23 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 82
Query: 78 KNRLPSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQART 124
+ + + + +AI +L + + + KV +AR
Sbjct: 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129
Score = 28.4 bits (64), Expect = 2.1
Identities = 18/109 (16%), Positives = 28/109 (25%), Gaps = 26/109 (23%)
Query: 22 GNIPEAIQSYRTALKL------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75
GN EAI + L + K A NL + +
Sbjct: 101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH--------------------AK 140
Query: 76 LDKNRLPSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQART 124
P + + A+ NL L+ A+ + Q R
Sbjct: 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRA 189
Score = 26.1 bits (58), Expect = 9.8
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 22 GNIPEAIQSYRTALKLKPDFPD------AYCNLAHCLQIV-CDWTDYEARMKKLVSIVAE 74
GN +A+ L++ + D A NL+ ++ ++ + M + I
Sbjct: 321 GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEI-DS 379
Query: 75 QLDKNR--LPSVHPHHSM-LYPLTHE 97
L+ R L H +M L LT E
Sbjct: 380 SLNGVRPKLGRRHSMENMELMKLTPE 405
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004,
methylase family protein, haemophilus influenzae R
structural genomics; 2.01A {Haemophilus influenzae}
Length = 244
Score = 27.9 bits (63), Expect = 2.1
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 47 NLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75
NLA +Q+V YE RM LV +
Sbjct: 144 NLAMAVQLVS----YELRMAFLVQNNKKN 168
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid
dehydrogenase complex,...; protein-protein interaction,
redox protein; HET: FAD NHE; 2.40A {Homo sapiens} PDB:
1zwv_A
Length = 58
Score = 25.7 bits (57), Expect = 2.5
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 162 KIAREAEHFLDLSQVPCNGKAADRIHKDGIH 192
+A E + + LS+V +GK RI K+ I
Sbjct: 16 NLAME--NNIKLSEVVGSGK-DGRILKEDIL 43
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix
transcriptional regulator cycle; 2.50A {Homo sapiens}
Length = 360
Score = 28.0 bits (61), Expect = 2.9
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 8 KVGILFSNSSFPSPGNIPEAIQSYRTAL 35
+ I+FS PSP + + A+
Sbjct: 69 TLTIVFSQLPLPSPQETQKFCEQVHAAI 96
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Length = 249
Score = 27.5 bits (62), Expect = 3.1
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 4/19 (21%)
Query: 47 NLAHCLQIVCDWTDYEARM 65
NLA C+ ++ YE R
Sbjct: 146 NLAQCVLLLA----YEWRR 160
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 3.1
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Query: 26 EAIQSYRTALKL-KPDFPDAYCNLA 49
+A++ + +LKL D A LA
Sbjct: 20 QALKKLQASLKLYADDSAPA---LA 41
>3ic6_A Putative methylase family protein; putative methylase family Pro
structural genomics, PSI-2, protein structure
initiative; 2.59A {Neisseria gonorrhoeae fa 1090}
Length = 223
Score = 27.3 bits (61), Expect = 3.2
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 47 NLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNR 80
NLA +Q+VC YE + + Q + +
Sbjct: 178 NLAQAVQVVC----YEIFSQTDSPMTHLQQEDHA 207
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 27.6 bits (61), Expect = 3.5
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 15/54 (27%)
Query: 22 GNIPEAIQSYRTALKL---KPDFPDA------------YCNLAHCLQIVCDWTD 60
G +A+ Y+ + + F + + NLA C + ++
Sbjct: 161 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA 214
>3uek_A Poly(ADP-ribose) glycohydrolase; mammalian PArg, macrodomain; 1.95A
{Rattus norvegicus} PDB: 3uel_A*
Length = 588
Score = 27.5 bits (60), Expect = 4.4
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 13/104 (12%)
Query: 16 SSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYE-------ARMKKL 68
+ F P N+ +AI Y A K DF L V + + + M K+
Sbjct: 157 NKFTRPQNLKDAILKYNVAYSKKWDFT----ALVDFWDKVLEEAEAQHLYQSILPDMVKI 212
Query: 69 VSIVAEQLDKNRLPSVHPHHSMLYPLTHEYRKAIAARHANLCLL 112
+ + +P + + ++ E ++ A +A C
Sbjct: 213 A-LCLPNICTQPIPLLKQKMNHSVTMSQEQIASLLA-NAFFCTF 254
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP:
b.68.6.1
Length = 326
Score = 27.3 bits (61), Expect = 4.7
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 6/58 (10%)
Query: 85 HPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKV-WQART---ESPLFCVQRYAQRL 138
H HH M PL+H + +L + +V + E P F
Sbjct: 8 HHHHHMNAPLSHSRPMMQPSEDKSLATVFPFAGRVLDETPMLLGEGPTFDPAS--GTA 63
>3rmr_A ATR1, avirulence protein; effector, RPP1-recognized, alpha-helical,
W-motif, seahorse, RPP1, R-protein, protein binding;
2.30A {Hyaloperonospora parasitica}
Length = 260
Score = 27.1 bits (59), Expect = 4.8
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 62 EARMKKLVSIVAEQLDKNRL-PSVHPHHSMLY-PLTHEYRKAIAARHANLCLLKAMRAKV 119
EA+MKK+V + ++++ L + H+ PL Y +A+A R + + +
Sbjct: 37 EAKMKKVVRTWKKLIERDDLIGEIGKHYFEAPGPLHDTYDEALATRLVTTYSDRGVARAI 96
Query: 120 WQARTESPLFCVQRYAQRLESLYKVMW 146
R PL A RLE +W
Sbjct: 97 LHTRPSDPLSKKAGQAHRLEEAVASLW 123
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A
{Drosophila melanogaster}
Length = 411
Score = 26.9 bits (60), Expect = 5.2
Identities = 4/36 (11%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 22 GNIPEAIQSYRTALKLK----PDFPDAYCNLAHCLQ 53
G+ + ++ A++ Y L +
Sbjct: 62 GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF 97
Score = 26.1 bits (58), Expect = 9.4
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 22 GNIPEAIQSYRTALKL------KPDFPDAYCNLAHCLQ 53
G+ +A+Q ++ L L + + NL + L+
Sbjct: 100 GDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK 137
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase;
HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB:
1k47_A* 3gon_A*
Length = 337
Score = 26.9 bits (59), Expect = 5.8
Identities = 10/72 (13%), Positives = 23/72 (31%)
Query: 10 GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV 69
++ S ++ T L+ F + + WT A +V
Sbjct: 160 DLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHMV 219
Query: 70 SIVAEQLDKNRL 81
+ + +++N L
Sbjct: 220 QQIKQNINQNFL 231
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 26.4 bits (57), Expect = 6.0
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAY 45
G EA + R A+++ P
Sbjct: 25 GEYDEAAANCRRAMEISHTMPPEE 48
Score = 26.0 bits (56), Expect = 7.6
Identities = 4/36 (11%), Positives = 14/36 (38%)
Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD 57
G EA+ ++ +++ + +++ D
Sbjct: 116 GRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAID 151
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 26.9 bits (58), Expect = 6.9
Identities = 18/120 (15%), Positives = 31/120 (25%), Gaps = 12/120 (10%)
Query: 26 EAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRLPSVH 85
+A YR A +L P Y LA D + SI +
Sbjct: 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR--SIAVK----------F 217
Query: 86 PHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQRYAQRLESLYKVM 145
P + L KA+ +R + ++ + + K+
Sbjct: 218 PFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLE 277
>4fc2_A Poly(ADP-ribose) glycohydrolase; mouse, PArg; 1.91A {Mus musculus}
Length = 521
Score = 26.7 bits (58), Expect = 7.3
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 13/103 (12%)
Query: 17 SFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYE-------ARMKKLV 69
F P N+ +AI Y A K DF L V + + + M K+
Sbjct: 101 KFTRPQNLKDAILKYNVAYSKKWDFT----ALVDFWDKVLEEAEAQHLYQSILPDMVKIA 156
Query: 70 SIVAEQLDKNRLPSVHPHHSMLYPLTHEYRKAIAARHANLCLL 112
+ + +P + + ++ E ++ A +A C
Sbjct: 157 -LCLPNICTQPIPLLKQKMNHSVTMSQEQIASLLA-NAFFCTF 197
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans;
5-methyltetrahydrofolate,methyltransferase, TIM barrel,
STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A
{Bacteroides thetaiotaomicron}
Length = 300
Score = 26.4 bits (59), Expect = 7.9
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 49 AHCLQIVCDWT--DYEARMKKLVSIVAEQLDKNRLP 82
A + + D D M ++++ + + R+P
Sbjct: 51 ALVIDVNMDDGLLDARTEMTTFLNLIMSEPEIARVP 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.134 0.418
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,496,867
Number of extensions: 198180
Number of successful extensions: 1023
Number of sequences better than 10.0: 1
Number of HSP's gapped: 985
Number of HSP's successfully gapped: 332
Length of query: 222
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 132
Effective length of database: 4,188,903
Effective search space: 552935196
Effective search space used: 552935196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (24.9 bits)