BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17697
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 17/78 (21%)
Query: 45 KIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN--- 101
+I N I H+PA +FR+ NL L L + ID AF+GL +L +LDL+ N
Sbjct: 35 RIFLHGNRISHVPAASFRACR--NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 92
Query: 102 ------------RIHTLH 107
R+HTLH
Sbjct: 93 RSVDPATFHGLGRLHTLH 110
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ N + LP D FR G NL +L L I+ + AF GL L L L +NR+ +HP
Sbjct: 136 QDNALQALPDDTFRDLG--NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 193
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
GL LH L L C + ++ P F GL L L L N + L
Sbjct: 102 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 143
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
GL L L L+D + + D F LG L L L NRI ++
Sbjct: 126 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 167
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 17/78 (21%)
Query: 45 KIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN--- 101
+I N I H+PA +FR+ NL L L + ID AF+GL +L +LDL+ N
Sbjct: 36 RIFLHGNRISHVPAASFRACR--NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 102 ------------RIHTLH 107
R+HTLH
Sbjct: 94 RSVDPATFHGLGRLHTLH 111
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ N + LP D FR G NL +L L I+ + AF GL L L L +NR+ +HP
Sbjct: 137 QDNALQALPDDTFRDLG--NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
GL LH L L C + ++ P F GL L L L N + L
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
GL L L L+D + + D F LG L L L NRI ++
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
NN+ L A+ + T L NLH+LLL ++ I +AF + L LDL+ N +HTL
Sbjct: 49 NNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Score = 25.4 bits (54), Expect = 7.6, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 59 DAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
D F + L L LLL + +I +D +AF + L +L L++N+I
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ NN+ LP + FR G NL +L L I + AF GL L L L +N + +HP
Sbjct: 136 QDNNLQALPDNTFRDLG--NLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHP 193
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 45 KIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 101
+I N I ++PA +F+S NL L L + ID AF+GL +L +LDL+ N
Sbjct: 35 RIFLHGNRISYVPAASFQSCR--NLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDN 89
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
GL +LH L L C + ++ P F GL L L L N + L
Sbjct: 102 GLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQAL 143
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKD-CNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
SN + + A AF TGL L L L D + +DP F GLG L L L + + L P
Sbjct: 64 SNALAGIDAAAF--TGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGP 121
Query: 109 G 109
G
Sbjct: 122 G 122
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
GL L L L+D N+ + + F LG L L L NRI ++
Sbjct: 126 GLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSV 167
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 43 KLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 102
+L +GE + ++ AF GLVNL L L CN+ DI P+ + L L EL+L+ NR
Sbjct: 135 RLDLGELKR-LEYISEAAFE--GLVNLRYLNLGMCNLKDI-PN-LTALVRLEELELSGNR 189
Query: 103 IHTLHPG 109
+ + PG
Sbjct: 190 LDLIRPG 196
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 43 KLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 102
+L +GE + ++ AF GLVNL L L CN+ DI P+ + L L EL+L+ NR
Sbjct: 135 RLDLGELKR-LEYISEAAFE--GLVNLRYLNLGMCNLKDI-PN-LTALVRLEELELSGNR 189
Query: 103 IHTLHPG 109
+ + PG
Sbjct: 190 LDLIRPG 196
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITD--IDPDAFSGLGILIELDLTKNRIHTLH 107
S+ I L DAF+ GL +L L L C ++D + F L L LDL+KN+I +L+
Sbjct: 82 SSKIYFLHPDAFQ--GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 59 DAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL 98
+AFR+ L NL L L I + PDAF GL L EL L
Sbjct: 67 EAFRN--LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 82 IDPDAFSGLGILIELDLTKNRIHTLHP 108
ID +AF L L LDL ++I+ LHP
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHP 90
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N+ P + +F GL +L L + + ++ I+ +AF GL L+EL+L N + +L
Sbjct: 228 NHFPEIRPGSFH--GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
NL L+LK I I+ DAF LG L LDL+ N + +L
Sbjct: 76 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 115
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
NL L+LK I I+ DAF LG L LDL+ N + +L
Sbjct: 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
SN + ++ F+ GL +L L+L+ IT + D+F GL + L L N+I T+ PG
Sbjct: 90 SNRLENVQHKMFK--GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107
L L + + ITDI+ AF G + E+ LT NR+ +
Sbjct: 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ 97
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
VNL L+L I I+ D+FS LG L LDL+ N + L
Sbjct: 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
VNL L+L I I+ D+FS LG L LDL+ N + L
Sbjct: 50 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 89
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
L NLH L+L + I+ I P AF+ L L L L+KN++ L
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
L NLH L+L + I+ I P AF+ L L L L+KN++ L
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 44 LKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
L++G+ N++ ++ AF +GL +L L L+ CN+T I +A S L LI L L I
Sbjct: 133 LEVGD--NDLVYISHRAF--SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188
Query: 104 HTL 106
+ +
Sbjct: 189 NAI 191
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
L NL L L+ + I F+GL L +LD+++N+I L
Sbjct: 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 119
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
++N+I L D F+ GL +L+ L+L + I+ I AFS L L +L ++KN + + P
Sbjct: 62 QNNDISELRKDDFK--GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP 119
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 55 HLPADAFRSTG----LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
H P + T L L L+L C+++ ID AF+ L ++ +DL+ NR+
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 45 KIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
+I + N I +P AF + L + L + I+++ PDAF GL L L L N+I
Sbjct: 36 EIRLEQNTIKVIPPGAF--SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 105 TL 106
L
Sbjct: 94 EL 95
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 45 KIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
+I +N I L DAF+ GL +L++L+L IT++ F GL L L L N+I+
Sbjct: 60 RIDLSNNQISELAPDAFQ--GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117
Query: 105 TLH 107
L
Sbjct: 118 XLR 120
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 45 KIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
+I + N I +P AF + L + L + I+++ PDAF GL L L L N+I
Sbjct: 36 EIRLEQNTIKVIPPGAF--SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 105 TL 106
L
Sbjct: 94 EL 95
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 45 KIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
+I +N I L DAF+ GL +L++L+L IT++ F GL L L L N+I+
Sbjct: 60 RIDLSNNQISELAPDAFQ--GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117
Query: 105 TLH 107
L
Sbjct: 118 CLR 120
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
L +L L LK +T I+P+AF G + EL L +N+I +
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 44 LKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
+K+ K N + + +AF G ++ L L + I +I F GL L L+L N+I
Sbjct: 57 VKLELKRNQLTGIEPNAFE--GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114
Query: 104 HTLHPG 109
+ PG
Sbjct: 115 SCVMPG 120
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 72 LLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
L+L CN+ ID AF GL + LDL+ N +
Sbjct: 480 LILSSCNLLSIDQQAFHGLRNVNHLDLSHNSL 511
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 44 LKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
LK+ S LP D F T L NL L L C + + P AF+ L L L++ N++
Sbjct: 450 LKMAGNSFQENFLP-DIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 104 HTLHPG 109
++ G
Sbjct: 507 KSVPDG 512
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 44 LKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
LK+ S LP D F T L NL L L C + + P AF+ L L L+++ N
Sbjct: 155 LKMAGNSFQENFLP-DIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Query: 104 HTL 106
+L
Sbjct: 212 FSL 214
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 24/48 (50%)
Query: 56 LPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
L + F S LH L L I+ I+ DAFS LG L LDL N I
Sbjct: 380 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 427
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 24/48 (50%)
Query: 56 LPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
L + F S LH L L I+ I+ DAFS LG L LDL N I
Sbjct: 375 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 422
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 43 KLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 102
+L +GE + ++ AF GL NL L L CN+ +I P+ + L L ELDL+ N
Sbjct: 164 RLDLGELKR-LSYISEGAFE--GLSNLRYLNLAMCNLREI-PN-LTPLIKLDELDLSGNH 218
Query: 103 IHTLHPGK 110
+ + PG
Sbjct: 219 LSAIRPGS 226
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
GL++L L + I I+ +AF L L+E++L N + TL P
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL-TLLP 271
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 24/48 (50%)
Query: 56 LPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
L + F S LH L L I+ I+ DAFS LG L LDL N I
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 19 LTVESCFNTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLV----NLHNLLL 74
L + CF L H LA + + K N H T L+ +L L+L
Sbjct: 427 LNLTYCF---LDTSNQHLLAGLPVLRHLNLKGN---HFQDGTITKTNLLQTVGSLEVLIL 480
Query: 75 KDCNITDIDPDAFSGLGILIELDLTKNRI 103
C + ID AF LG + +DL+ N +
Sbjct: 481 SSCGLLSIDQQAFHSLGKMSHVDLSHNSL 509
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 64 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
T L NL L L C + + P AF+ L L L+++ N +L
Sbjct: 491 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 533
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 64 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
T L NL L L C + + P AF+ L L L+++ N +L
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 72 LLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
L L D IT ++P F L L LDL N++ L G
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG 80
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 20/71 (28%)
Query: 58 ADAFRSTGLVNLHNLLLKDCNITDIDP--------------------DAFSGLGILIELD 97
AD L NL L L + ITDIDP A SGL L +L+
Sbjct: 98 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLN 157
Query: 98 LTKNRIHTLHP 108
+ N++ L P
Sbjct: 158 FSSNQVTDLKP 168
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N I + AF T L L+ L + N+ ++ D F G + LD+++ RIH+L
Sbjct: 164 NGIQEIHNSAFNGTQLDELN--LSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 72 LLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
L L D IT ++P F L L LDL N++ L G
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG 72
>pdb|3HL0|A Chain A, Crystal Structure Of Maleylacetate Reductase From
Agrobacterium Tumefaciens
pdb|3HL0|B Chain B, Crystal Structure Of Maleylacetate Reductase From
Agrobacterium Tumefaciens
Length = 353
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 8 SDLLIDIDQLGLTVESCFNTWLSVGKHHALAARVLKLKIGEKSNNIPHLP-------ADA 60
+D+ +I +LGL+ +T G ALA+R+ +L G S H P +A
Sbjct: 23 ADVAEEIRRLGLSRALVLSTPQQKGDAEALASRLGRLAAGVFSEAAXHTPVEVTKTAVEA 82
Query: 61 FRSTG 65
+R+ G
Sbjct: 83 YRAAG 87
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 72 LLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
L L D IT ++P F L L LDL N++ L G
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG 72
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 49 KSNNIPHLPA---DAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 105
K++ + LPA D+FR L+NL++L I +ID AF+ + +L + N I
Sbjct: 59 KNSTMRKLPAALLDSFRQVELLNLNDL-----QIEEIDTYAFAYAHTIQKLYMGFNAIRY 113
Query: 106 LHP 108
L P
Sbjct: 114 LPP 116
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
N++ LP F +T L L + + N+ I+ D F L L L+ NR+
Sbjct: 133 NDLSSLPRGIFHNTP--KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 57 PADAFRSTGLVNLHNLL---LKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
P +S N L L C I I+ A+ GL L L LT N I + PG
Sbjct: 43 PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 57 PADAFRSTGLVNLHNLL---LKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
P +S N L L C I I+ A+ GL L L LT N I + PG
Sbjct: 38 PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 93
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 20/71 (28%)
Query: 58 ADAFRSTGLVNLHNLLLKDCNITDIDP--------------------DAFSGLGILIELD 97
AD L NL L L + ITDIDP A SGL L +L
Sbjct: 98 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 157
Query: 98 LTKNRIHTLHP 108
+ N++ L P
Sbjct: 158 FSSNQVTDLKP 168
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 20/71 (28%)
Query: 58 ADAFRSTGLVNLHNLLLKDCNITDIDP--------------------DAFSGLGILIELD 97
AD L NL L L + ITDIDP A SGL L +L
Sbjct: 98 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 157
Query: 98 LTKNRIHTLHP 108
+ N++ L P
Sbjct: 158 FSSNQVTDLKP 168
>pdb|3TDQ|A Chain A, Crystal Structure Of A Fimbrial Biogenesis Protein Pily2
(Pily2_pa4555) From Pseudomonas Aeruginosa Pao1 At 2.10
A Resolution
pdb|3TDQ|B Chain B, Crystal Structure Of A Fimbrial Biogenesis Protein Pily2
(Pily2_pa4555) From Pseudomonas Aeruginosa Pao1 At 2.10
A Resolution
Length = 98
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 83 DPDAFSGLGILIELDLTKNRIHTLH 107
DP F G G++ E+ + KN + H
Sbjct: 3 DPQTFEGAGVVFEVQVEKNLVDIDH 27
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 44 LKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
L IG +N + +P + L LH L + N++ PD S + L+ LD + N +
Sbjct: 81 LYIGGINNLVGPIPPAIAK---LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137
Query: 104 H-TLHP 108
TL P
Sbjct: 138 SGTLPP 143
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 49 KSNNIPHLPA---DAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 105
K++ + LPA D+FR L+NL++L I +ID AF+ + +L + N I
Sbjct: 53 KNSTMRKLPAALLDSFRQVELLNLNDL-----QIEEIDTYAFAYAHTIQKLYMGFNAIRY 107
Query: 106 LHP 108
L P
Sbjct: 108 LPP 110
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 79 ITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+T + A GLG L EL L N + TL PG
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPG 142
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 79 ITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+T + A GLG L EL L N + TL PG
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPG 142
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
LVNL L +T I F L L +LDL N + ++ G
Sbjct: 56 LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 79 ITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+T + A GLG L EL L N + TL PG
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPG 142
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 79 ITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+T + A GLG L EL L N + TL PG
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPG 142
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 79 ITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+T + A GLG L EL L N + TL PG
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPG 142
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 79 ITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+T + A GLG L EL L N + TL PG
Sbjct: 113 LTSLPLGALRGLGELQELYLKGNELKTLPPG 143
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 79 ITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+T + A GLG L EL L N + TL PG
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPG 142
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 79 ITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+T + A GLG L EL L N + TL PG
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPG 142
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 79 ITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+T + A GLG L EL L N + TL PG
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPG 142
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N I + AF T L L+ L + N+ ++ D F G + LD+++ RIH+L
Sbjct: 164 NGIQEIHNCAFNGTQLDELN--LSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 79 ITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+T + A GLG L EL L N + TL PG
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,522,355
Number of Sequences: 62578
Number of extensions: 124589
Number of successful extensions: 307
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 186
Number of HSP's gapped (non-prelim): 129
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)