Query psy17697
Match_columns 110
No_of_seqs 108 out of 2396
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 20:41:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4237|consensus 99.4 1.1E-13 2.3E-18 104.5 1.4 94 10-109 27-134 (498)
2 PF13855 LRR_8: Leucine rich r 99.2 1E-11 2.2E-16 70.9 3.4 59 39-103 3-61 (61)
3 PF12799 LRR_4: Leucine Rich r 98.4 2.4E-07 5.3E-12 49.8 3.0 41 67-108 1-41 (44)
4 PF13855 LRR_8: Leucine rich r 98.4 1.9E-07 4E-12 53.0 2.2 43 67-109 1-43 (61)
5 KOG4237|consensus 98.3 1.1E-07 2.3E-12 72.5 0.5 66 38-109 275-340 (498)
6 KOG4194|consensus 98.3 3.5E-07 7.7E-12 72.8 2.7 65 38-108 150-214 (873)
7 KOG4194|consensus 98.2 5.4E-07 1.2E-11 71.7 1.6 66 38-109 270-335 (873)
8 KOG0444|consensus 98.0 1.6E-06 3.5E-11 69.9 0.5 65 38-109 104-168 (1255)
9 PF14580 LRR_9: Leucine-rich r 98.0 6.2E-06 1.4E-10 56.6 3.0 62 38-107 43-104 (175)
10 KOG0617|consensus 97.8 2.2E-06 4.7E-11 59.6 -1.2 63 38-108 34-96 (264)
11 PLN03150 hypothetical protein; 97.7 3.7E-05 8.1E-10 61.8 4.4 61 38-104 443-503 (623)
12 PLN00113 leucine-rich repeat r 97.7 5.1E-05 1.1E-09 63.0 5.1 73 26-104 58-131 (968)
13 PLN03150 hypothetical protein; 97.7 0.00011 2.4E-09 59.1 6.3 74 26-105 402-480 (623)
14 PF14580 LRR_9: Leucine-rich r 97.6 4.4E-05 9.5E-10 52.4 2.3 63 38-106 65-128 (175)
15 KOG1259|consensus 97.6 1.8E-05 4E-10 59.2 0.3 62 38-108 285-346 (490)
16 PLN00113 leucine-rich repeat r 97.5 0.0001 2.2E-09 61.2 4.2 54 49-104 507-560 (968)
17 PF12799 LRR_4: Leucine Rich r 97.4 0.0001 2.2E-09 39.4 2.1 39 39-84 3-41 (44)
18 KOG0444|consensus 97.2 5.7E-05 1.2E-09 61.3 -0.7 61 38-105 127-187 (1255)
19 KOG0618|consensus 97.2 3.3E-05 7.1E-10 64.1 -2.1 57 49-107 367-423 (1081)
20 KOG0617|consensus 97.2 6.6E-05 1.4E-09 52.3 -0.5 60 38-105 57-116 (264)
21 KOG0472|consensus 97.1 6.9E-05 1.5E-09 57.8 -1.6 56 49-107 236-291 (565)
22 KOG4579|consensus 96.8 0.00021 4.6E-09 48.0 -0.5 63 38-107 54-116 (177)
23 PRK15370 E3 ubiquitin-protein 96.8 0.002 4.4E-08 53.1 4.8 38 68-108 263-300 (754)
24 KOG0472|consensus 96.8 0.00018 3.9E-09 55.6 -1.4 51 51-104 491-541 (565)
25 KOG1644|consensus 96.7 0.0017 3.7E-08 45.9 3.1 61 38-106 43-103 (233)
26 PRK15370 E3 ubiquitin-protein 96.7 0.0027 5.8E-08 52.4 4.6 37 38-83 200-236 (754)
27 COG4886 Leucine-rich repeat (L 96.6 0.00069 1.5E-08 50.9 0.5 56 49-108 148-203 (394)
28 PRK15387 E3 ubiquitin-protein 96.4 0.0064 1.4E-07 50.4 5.3 55 38-106 223-277 (788)
29 KOG0618|consensus 96.4 0.00036 7.8E-09 58.2 -2.2 62 38-105 384-466 (1081)
30 KOG4579|consensus 96.4 0.00018 4E-09 48.3 -3.2 68 38-109 28-95 (177)
31 PRK15387 E3 ubiquitin-protein 96.3 0.0032 7E-08 52.1 2.8 37 68-105 423-459 (788)
32 PF13504 LRR_7: Leucine rich r 96.2 0.0026 5.5E-08 27.2 1.1 16 92-107 2-17 (17)
33 KOG1644|consensus 96.0 0.0068 1.5E-07 43.0 3.0 62 38-105 65-127 (233)
34 KOG0532|consensus 96.0 0.0013 2.8E-08 52.7 -0.9 63 38-109 122-184 (722)
35 PF00560 LRR_1: Leucine Rich R 95.9 0.0028 6.1E-08 28.7 0.6 18 92-109 1-18 (22)
36 COG4886 Leucine-rich repeat (L 95.8 0.0058 1.3E-07 46.0 2.1 64 38-109 117-181 (394)
37 KOG0531|consensus 95.8 0.0054 1.2E-07 46.9 1.9 62 38-108 96-157 (414)
38 smart00369 LRR_TYP Leucine-ric 95.8 0.0071 1.5E-07 28.2 1.6 18 91-108 2-19 (26)
39 smart00370 LRR Leucine-rich re 95.8 0.0071 1.5E-07 28.2 1.6 18 91-108 2-19 (26)
40 smart00370 LRR Leucine-rich re 95.7 0.0088 1.9E-07 27.9 1.7 22 67-88 2-23 (26)
41 smart00369 LRR_TYP Leucine-ric 95.7 0.0088 1.9E-07 27.9 1.7 22 67-88 2-23 (26)
42 KOG1259|consensus 95.5 0.0052 1.1E-07 46.3 0.9 38 38-83 308-345 (490)
43 PF00560 LRR_1: Leucine Rich R 95.5 0.0058 1.3E-07 27.6 0.7 17 69-85 2-18 (22)
44 PF13306 LRR_5: Leucine rich r 94.8 0.061 1.3E-06 33.8 4.1 56 38-101 36-91 (129)
45 PF13306 LRR_5: Leucine rich r 94.7 0.067 1.4E-06 33.6 4.1 60 39-107 14-73 (129)
46 KOG0531|consensus 94.6 0.016 3.4E-07 44.4 1.1 61 38-108 119-179 (414)
47 smart00364 LRR_BAC Leucine-ric 93.6 0.05 1.1E-06 25.8 1.4 18 91-108 2-19 (26)
48 KOG1859|consensus 93.4 0.012 2.6E-07 48.8 -1.5 59 38-105 188-246 (1096)
49 KOG4658|consensus 93.3 0.048 1E-06 46.0 1.7 64 38-108 546-612 (889)
50 KOG3207|consensus 93.0 0.066 1.4E-06 41.9 2.1 65 38-107 247-317 (505)
51 PLN03210 Resistant to P. syrin 92.3 0.42 9.1E-06 41.3 6.1 55 38-101 612-667 (1153)
52 PLN03210 Resistant to P. syrin 92.3 0.28 6E-06 42.4 5.0 41 66-107 656-698 (1153)
53 cd00116 LRR_RI Leucine-rich re 92.2 0.065 1.4E-06 38.6 1.0 38 67-104 137-178 (319)
54 cd00116 LRR_RI Leucine-rich re 92.1 0.069 1.5E-06 38.5 1.0 38 67-104 193-234 (319)
55 KOG1859|consensus 91.6 0.036 7.9E-07 46.1 -1.0 61 38-107 210-270 (1096)
56 smart00365 LRR_SD22 Leucine-ri 91.2 0.22 4.8E-06 23.5 2.0 16 91-106 2-17 (26)
57 KOG0532|consensus 90.9 0.055 1.2E-06 43.7 -0.5 54 49-107 197-250 (722)
58 KOG4658|consensus 90.4 0.13 2.9E-06 43.4 1.3 57 38-102 572-629 (889)
59 KOG2739|consensus 88.6 0.33 7.2E-06 35.4 2.0 40 65-104 63-104 (260)
60 KOG3207|consensus 88.1 0.044 9.6E-07 42.8 -2.8 63 38-106 223-286 (505)
61 PRK15386 type III secretion pr 84.9 1.9 4E-05 33.8 4.4 57 38-107 53-111 (426)
62 TIGR00864 PCC polycystin catio 84.8 0.61 1.3E-05 43.6 2.0 31 49-81 3-33 (2740)
63 PF13516 LRR_6: Leucine Rich r 82.4 0.75 1.6E-05 20.7 0.9 14 91-104 2-15 (24)
64 smart00368 LRR_RI Leucine rich 79.6 1.7 3.8E-05 20.5 1.7 14 91-104 2-15 (28)
65 KOG2739|consensus 77.3 1.7 3.6E-05 31.8 1.8 62 38-105 66-130 (260)
66 KOG2982|consensus 77.2 2.6 5.6E-05 32.1 2.8 61 38-104 98-159 (418)
67 KOG0473|consensus 75.7 0.064 1.4E-06 39.2 -5.8 63 38-108 43-105 (326)
68 KOG2123|consensus 68.9 0.42 9E-06 35.9 -3.0 57 38-102 42-99 (388)
69 KOG3665|consensus 68.1 2 4.3E-05 35.6 0.4 63 38-106 123-188 (699)
70 KOG2123|consensus 67.4 0.27 5.9E-06 36.8 -4.2 54 49-108 27-80 (388)
71 KOG3665|consensus 66.6 2.1 4.6E-05 35.4 0.3 51 2-56 138-188 (699)
72 PF01462 LRRNT: Leucine rich r 66.5 2.4 5.2E-05 20.1 0.4 14 19-32 1-14 (28)
73 smart00013 LRRNT Leucine rich 64.3 2.8 6E-05 20.5 0.4 11 19-29 1-11 (33)
74 KOG2982|consensus 61.7 3.2 6.8E-05 31.6 0.4 60 38-103 72-133 (418)
75 TIGR00864 PCC polycystin catio 58.9 5.9 0.00013 37.6 1.7 32 73-104 1-32 (2740)
76 PRK15386 type III secretion pr 54.8 16 0.00035 28.7 3.2 36 38-82 73-110 (426)
77 KOG1909|consensus 51.9 4.8 0.0001 30.9 -0.0 13 67-79 213-225 (382)
78 KOG3763|consensus 51.5 8.1 0.00017 31.4 1.2 11 67-77 244-254 (585)
79 KOG1909|consensus 47.3 13 0.00028 28.7 1.6 62 38-105 158-227 (382)
80 smart00286 PTI Plant trypsin i 41.2 19 0.00041 17.3 1.1 24 6-29 2-25 (29)
81 COG5238 RNA1 Ran GTPase-activa 40.8 22 0.00048 26.9 2.0 15 90-104 119-133 (388)
82 KOG3763|consensus 39.1 15 0.00033 29.8 1.0 37 65-101 216-254 (585)
83 KOG0473|consensus 35.7 2.2 4.7E-05 31.4 -3.8 43 66-109 41-83 (326)
84 cd00150 PlantTI Plant trypsin 31.0 29 0.00063 16.4 0.9 22 8-29 2-23 (27)
85 COG4247 Phy 3-phytase (myo-ino 20.7 59 0.0013 24.3 1.3 20 91-110 77-96 (364)
86 PF07725 LRR_3: Leucine Rich R 20.1 91 0.002 13.6 1.4 14 94-107 3-16 (20)
87 PF00299 Squash: Squash family 20.1 22 0.00047 17.1 -0.7 23 7-29 3-25 (29)
No 1
>KOG4237|consensus
Probab=99.38 E-value=1.1e-13 Score=104.52 Aligned_cols=94 Identities=31% Similarity=0.413 Sum_probs=78.7
Q ss_pred hhhcccccCCCCCCCcccccC---ceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccC
Q psy17697 10 LLIDIDQLGLTVESCFNTWLS---VGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKD 76 (110)
Q Consensus 10 ~~~~~~~~~~cp~~c~c~~~~---~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~ 76 (110)
...+...+..||.+|.|+..+ +.|... + +++.|++ ..|.|+.||+++|. .+..|+.++|+.
T Consensus 27 ~~~C~~~~~~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirL----dqN~I~~iP~~aF~--~l~~LRrLdLS~ 100 (498)
T KOG4237|consen 27 VPTCAHSASACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRL----DQNQISSIPPGAFK--TLHRLRRLDLSK 100 (498)
T ss_pred hhhhhhccccCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEe----ccCCcccCChhhcc--chhhhceecccc
Confidence 444555578899999999843 444333 2 8889999 99999999999999 899999999999
Q ss_pred CCCcccCcccccCCcCCcEEeCCC-CCCccccCC
Q psy17697 77 CNITDIDPDAFSGLGILIELDLTK-NRIHTLHPG 109 (110)
Q Consensus 77 n~l~~i~~~~f~~l~~L~~l~Ls~-N~l~~l~~~ 109 (110)
|+|++|.|++|.++.++..|.+-+ |+|+.+|.+
T Consensus 101 N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 101 NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 999999999999999987776655 999998764
No 2
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.22 E-value=1e-11 Score=70.90 Aligned_cols=59 Identities=42% Similarity=0.635 Sum_probs=56.5
Q ss_pred eeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCC
Q psy17697 39 ARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103 (110)
Q Consensus 39 l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l 103 (110)
++.+++ ++|.++.+++..|. ++++|+.+++++|.++.+++++|.++++|+.+++++|+|
T Consensus 3 L~~L~l----~~n~l~~i~~~~f~--~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 3 LESLDL----SNNKLTEIPPDSFS--NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp ESEEEE----TSSTESEECTTTTT--TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcEEEC----CCCCCCccCHHHHc--CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 678999 99999999999999 899999999999999999999999999999999999985
No 3
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.43 E-value=2.4e-07 Score=49.76 Aligned_cols=41 Identities=39% Similarity=0.578 Sum_probs=34.0
Q ss_pred ccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 67 ~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
++|+.|++++|+|+.+++. +..+++|+.+++++|+|+.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCCcC
Confidence 3688999999999999774 7899999999999999998875
No 4
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=1.9e-07 Score=53.04 Aligned_cols=43 Identities=40% Similarity=0.622 Sum_probs=40.2
Q ss_pred ccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697 67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109 (110)
Q Consensus 67 ~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~ 109 (110)
++|+.+++++|+++.+++..|.++++|+.+++++|.++.++++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~ 43 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD 43 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETT
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHH
Confidence 4689999999999999999999999999999999999998874
No 5
>KOG4237|consensus
Probab=98.35 E-value=1.1e-07 Score=72.48 Aligned_cols=66 Identities=33% Similarity=0.519 Sum_probs=62.6
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~ 109 (110)
++++|++ ++|+|+.|.++.|. +..+++.|+|.+|++..+....|.++..|+.|+|.+|+|+.+.++
T Consensus 275 ~L~~lnl----snN~i~~i~~~aFe--~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 275 NLRKLNL----SNNKITRIEDGAFE--GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred cceEecc----CCCccchhhhhhhc--chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence 7889999 99999999999999 899999999999999999999999999999999999999988764
No 6
>KOG4194|consensus
Probab=98.31 E-value=3.5e-07 Score=72.75 Aligned_cols=65 Identities=37% Similarity=0.552 Sum_probs=45.3
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.+++ +.|.|++++...|. .-.+++.|+|++|.|+.+..+.|.++.+|..|-|++|.++++|.
T Consensus 150 alrslDL----SrN~is~i~~~sfp--~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~ 214 (873)
T KOG4194|consen 150 ALRSLDL----SRNLISEIPKPSFP--AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ 214 (873)
T ss_pred hhhhhhh----hhchhhcccCCCCC--CCCCceEEeeccccccccccccccccchheeeecccCcccccCH
Confidence 4455566 66666666666665 34567777777777777777777777777777777777777764
No 7
>KOG4194|consensus
Probab=98.21 E-value=5.4e-07 Score=71.73 Aligned_cols=66 Identities=33% Similarity=0.388 Sum_probs=55.8
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~ 109 (110)
+++.|++ ..|+++.+..+... |++.|+.|+++.|.|..|+.+.++..++|.+|+|+.|+|++++++
T Consensus 270 kme~l~L----~~N~l~~vn~g~lf--gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 270 KMEHLNL----ETNRLQAVNEGWLF--GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred ccceeec----ccchhhhhhccccc--ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh
Confidence 6677777 78888887777766 788889999999999999988888888999999999999988875
No 8
>KOG0444|consensus
Probab=98.00 E-value=1.6e-06 Score=69.94 Aligned_cols=65 Identities=31% Similarity=0.346 Sum_probs=57.7
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~ 109 (110)
+++.|++ ++|++.++|.+.= ...++..|+|++|+|..|+...|.++..|.+||||+|++..+||+
T Consensus 104 dLt~lDL----ShNqL~EvP~~LE---~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ 168 (1255)
T KOG0444|consen 104 DLTILDL----SHNQLREVPTNLE---YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ 168 (1255)
T ss_pred cceeeec----chhhhhhcchhhh---hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH
Confidence 8888999 9999999998763 367888999999999999998899999999999999999999874
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.97 E-value=6.2e-06 Score=56.61 Aligned_cols=62 Identities=34% Similarity=0.422 Sum_probs=23.7
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.|++ ++|.|+.++. +. .++.|+.|++++|.|+.+.+.....+++|+.|++++|+|+.+.
T Consensus 43 ~L~~L~L----s~N~I~~l~~--l~--~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~ 104 (175)
T PF14580_consen 43 KLEVLDL----SNNQITKLEG--LP--GLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLN 104 (175)
T ss_dssp T--EEE-----TTS--S--TT--------TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCC
T ss_pred CCCEEEC----CCCCCccccC--cc--ChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChH
Confidence 4567777 7777777763 44 5677777777777777775542234677777777777776653
No 10
>KOG0617|consensus
Probab=97.83 E-value=2.2e-06 Score=59.57 Aligned_cols=63 Identities=27% Similarity=0.347 Sum_probs=40.8
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.+.+ ++|.++-+|++.-. +.+|+.+++.+|+|+.++.. .+.+++|+.|+++.|++..+|.
T Consensus 34 ~ITrLtL----SHNKl~~vppnia~---l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lpr 96 (264)
T KOG0617|consen 34 NITRLTL----SHNKLTVVPPNIAE---LKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPR 96 (264)
T ss_pred hhhhhhc----ccCceeecCCcHHH---hhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCcc
Confidence 5556666 77777777766643 66666777777777666555 4566666666666666665554
No 11
>PLN03150 hypothetical protein; Provisional
Probab=97.75 E-value=3.7e-05 Score=61.77 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=42.3
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~ 104 (110)
.++.|++ ++|.+....+..+. .+++|+.|++++|+++...|..+..+++|+.|+|++|.++
T Consensus 443 ~L~~L~L----s~N~l~g~iP~~~~--~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 443 HLQSINL----SGNSIRGNIPPSLG--SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred CCCEEEC----CCCcccCcCChHHh--CCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 5566677 77777644444455 5677777777777777666666777777888888777765
No 12
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.72 E-value=5.1e-05 Score=62.97 Aligned_cols=73 Identities=19% Similarity=0.271 Sum_probs=45.8
Q ss_pred ccccCceeEEEEeeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCc-ccCcccccCCcCCcEEeCCCCCCc
Q psy17697 26 NTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNIT-DIDPDAFSGLGILIELDLTKNRIH 104 (110)
Q Consensus 26 c~~~~~~~~~~l~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~-~i~~~~f~~l~~L~~l~Ls~N~l~ 104 (110)
|.|.++.|...-.++.+++ ++|.+....+..|. .+++|+.|++++|.++ .++...|..+.+|+.|++++|.++
T Consensus 58 c~w~gv~c~~~~~v~~L~L----~~~~i~~~~~~~~~--~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~ 131 (968)
T PLN00113 58 CLWQGITCNNSSRVVSIDL----SGKNISGKISSAIF--RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT 131 (968)
T ss_pred CcCcceecCCCCcEEEEEe----cCCCccccCChHHh--CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc
Confidence 7888877753224556666 66666665555565 5666777777777665 344454556666666666666654
No 13
>PLN03150 hypothetical protein; Provisional
Probab=97.69 E-value=0.00011 Score=59.13 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=62.0
Q ss_pred ccccCceeEEE-----EeeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCC
Q psy17697 26 NTWLSVGKHHA-----LAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 100 (110)
Q Consensus 26 c~~~~~~~~~~-----l~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~ 100 (110)
|.|.++.|... ..++.|++ ++|.+....+..+. .+++|+.|++++|.++...|..+..+++|+.|+|++
T Consensus 402 ~~w~Gv~C~~~~~~~~~~v~~L~L----~~n~L~g~ip~~i~--~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~ 475 (623)
T PLN03150 402 HPWSGADCQFDSTKGKWFIDGLGL----DNQGLRGFIPNDIS--KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY 475 (623)
T ss_pred cccccceeeccCCCCceEEEEEEC----CCCCccccCCHHHh--CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCC
Confidence 57888888532 25778999 99999876666666 689999999999999977777789999999999999
Q ss_pred CCCcc
Q psy17697 101 NRIHT 105 (110)
Q Consensus 101 N~l~~ 105 (110)
|.++.
T Consensus 476 N~lsg 480 (623)
T PLN03150 476 NSFNG 480 (623)
T ss_pred CCCCC
Confidence 99984
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.58 E-value=4.4e-05 Score=52.44 Aligned_cols=63 Identities=27% Similarity=0.387 Sum_probs=34.9
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc-ccccCCcCCcEEeCCCCCCccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHTL 106 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~-~~f~~l~~L~~l~Ls~N~l~~l 106 (110)
.++.|.+ ++|.|+.+...... .+++|+.|++++|+|..+.. ..+..+++|+.|++.+|.+..-
T Consensus 65 ~L~~L~L----~~N~I~~i~~~l~~--~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 65 RLKTLDL----SNNRISSISEGLDK--NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp T--EEE------SS---S-CHHHHH--H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred hhhhccc----CCCCCCccccchHH--hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 8889999 99999999765444 47899999999999988766 5677899999999999998753
No 15
>KOG1259|consensus
Probab=97.57 E-value=1.8e-05 Score=59.15 Aligned_cols=62 Identities=23% Similarity=0.218 Sum_probs=54.1
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++++++ ++|.|+.+...+- -.+.++.|+++.|+|..+.. +..+++|+.||||+|.++++..
T Consensus 285 ~LtelDL----S~N~I~~iDESvK---L~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~G 346 (490)
T KOG1259|consen 285 ELTELDL----SGNLITQIDESVK---LAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVG 346 (490)
T ss_pred hhhhccc----cccchhhhhhhhh---hccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhh
Confidence 7888999 9999999988774 37999999999999999966 5678999999999999987654
No 16
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.52 E-value=0.0001 Score=61.19 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=27.4
Q ss_pred CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCc
Q psy17697 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104 (110)
Q Consensus 49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~ 104 (110)
++|.+....+..+. .+++|+.|++++|.++...|..|..+++|+.|++++|.++
T Consensus 507 s~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 507 SENKLSGEIPDELS--SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred cCCcceeeCChHHc--CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccc
Confidence 44444443333333 3455555555555555555555555555555555555554
No 17
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.44 E-value=0.0001 Score=39.42 Aligned_cols=39 Identities=38% Similarity=0.602 Sum_probs=32.0
Q ss_pred eeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc
Q psy17697 39 ARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP 84 (110)
Q Consensus 39 l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~ 84 (110)
+++|++ ++|.|+.+|+. +. .+++|+.+++++|+++.+++
T Consensus 3 L~~L~l----~~N~i~~l~~~-l~--~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 3 LEELDL----SNNQITDLPPE-LS--NLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp -SEEEE----TSSS-SSHGGH-GT--TCTTSSEEEETSSCCSBEGG
T ss_pred ceEEEc----cCCCCcccCch-Hh--CCCCCCEEEecCCCCCCCcC
Confidence 678999 99999999874 45 58999999999999997743
No 18
>KOG0444|consensus
Probab=97.22 E-value=5.7e-05 Score=61.27 Aligned_cols=61 Identities=30% Similarity=0.440 Sum_probs=55.2
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 105 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~ 105 (110)
+..+|.+ ++|+|..||...|. .++.|..|+|++|.+..++|+ ...+..|+.|.|++|.+..
T Consensus 127 n~iVLNL----S~N~IetIPn~lfi--nLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 127 NSIVLNL----SYNNIETIPNSLFI--NLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred CcEEEEc----ccCccccCCchHHH--hhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCChhhH
Confidence 6778999 99999999999999 789999999999999999998 5778899999999997654
No 19
>KOG0618|consensus
Probab=97.22 E-value=3.3e-05 Score=64.13 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=29.2
Q ss_pred CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.+|.+..-.-.++. ++.+|+.|+|++|++..++...+..+..|++|+||||+++++|
T Consensus 367 anN~Ltd~c~p~l~--~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp 423 (1081)
T KOG0618|consen 367 ANNHLTDSCFPVLV--NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP 423 (1081)
T ss_pred hcCcccccchhhhc--cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh
Confidence 44444443333333 4455555555555555555555555555555555555555544
No 20
>KOG0617|consensus
Probab=97.20 E-value=6.6e-05 Score=52.30 Aligned_cols=60 Identities=28% Similarity=0.335 Sum_probs=52.2
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 105 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~ 105 (110)
+++.+.+ .+|+++++|...-. ++.|+.+++..|.+..++.+ |+.++.|+.|||+.|.++.
T Consensus 57 nlevln~----~nnqie~lp~~iss---l~klr~lnvgmnrl~~lprg-fgs~p~levldltynnl~e 116 (264)
T KOG0617|consen 57 NLEVLNL----SNNQIEELPTSISS---LPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYNNLNE 116 (264)
T ss_pred hhhhhhc----ccchhhhcChhhhh---chhhhheecchhhhhcCccc-cCCCchhhhhhcccccccc
Confidence 7888899 99999999998864 88999999999998877655 8999999999999998763
No 21
>KOG0472|consensus
Probab=97.05 E-value=6.9e-05 Score=57.77 Aligned_cols=56 Identities=32% Similarity=0.443 Sum_probs=27.4
Q ss_pred CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
+.|+|+.+|+.... .+.++..+++.+|+++..+.. .--+++|..||+|+|.|+.+|
T Consensus 236 g~N~i~~lpae~~~--~L~~l~vLDLRdNklke~Pde-~clLrsL~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 236 GENQIEMLPAEHLK--HLNSLLVLDLRDNKLKEVPDE-ICLLRSLERLDLSNNDISSLP 291 (565)
T ss_pred cccHHHhhHHHHhc--ccccceeeeccccccccCchH-HHHhhhhhhhcccCCccccCC
Confidence 44444444444444 345555555555555555443 223445555555555555544
No 22
>KOG4579|consensus
Probab=96.84 E-value=0.00021 Score=47.97 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=46.7
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
+++.+.+ ++|.++..|+..-. -++.+..+++.+|.|+.++.. +...+.|+.+++..|.+...|
T Consensus 54 el~~i~l----s~N~fk~fp~kft~--kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p 116 (177)
T KOG4579|consen 54 ELTKISL----SDNGFKKFPKKFTI--KFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEP 116 (177)
T ss_pred eEEEEec----ccchhhhCCHHHhh--ccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccch
Confidence 6667777 88888877776555 356677778888888888766 777778888888888776654
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.81 E-value=0.002 Score=53.08 Aligned_cols=38 Identities=26% Similarity=0.201 Sum_probs=21.4
Q ss_pred cccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 68 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 68 ~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
+|+.|++++|+++.++... ..+|+.|++++|+++.+|.
T Consensus 263 ~L~~L~Ls~N~L~~LP~~l---~~sL~~L~Ls~N~Lt~LP~ 300 (754)
T PRK15370 263 ALQSLDLFHNKISCLPENL---PEELRYLSVYDNSIRTLPA 300 (754)
T ss_pred CCCEEECcCCccCcccccc---CCCCcEEECCCCccccCcc
Confidence 4555666666666554331 1356666666666666553
No 24
>KOG0472|consensus
Probab=96.78 E-value=0.00018 Score=55.56 Aligned_cols=51 Identities=24% Similarity=0.391 Sum_probs=30.1
Q ss_pred ccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCc
Q psy17697 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104 (110)
Q Consensus 51 n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~ 104 (110)
|++..+++.... ++.+|..+++.+|.+..|+|. ...+.+|++|.+.+|.+.
T Consensus 491 nqi~~vd~~~l~--nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 491 NQIGSVDPSGLK--NMRNLTTLDLQNNDLQQIPPI-LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccccChHHhh--hhhhcceeccCCCchhhCChh-hccccceeEEEecCCccC
Confidence 444444444333 456666666666666666655 566666666666666665
No 25
>KOG1644|consensus
Probab=96.69 E-value=0.0017 Score=45.92 Aligned_cols=61 Identities=38% Similarity=0.451 Sum_probs=46.3
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l 106 (110)
....+++ +.|.+..++. |. .++.|++|.+.+|.|+.|.+..-..++.|..|.|++|.|..+
T Consensus 43 ~~d~iDL----tdNdl~~l~~--lp--~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l 103 (233)
T KOG1644|consen 43 QFDAIDL----TDNDLRKLDN--LP--HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL 103 (233)
T ss_pred ccceecc----cccchhhccc--CC--CccccceEEecCCcceeeccchhhhccccceEEecCcchhhh
Confidence 4556777 8887776554 55 578888888888888888887656677888888888887765
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.68 E-value=0.0027 Score=52.40 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=20.6
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDID 83 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~ 83 (110)
.++.|++ ++|.++.+|...+ .+|+.|++++|+++.++
T Consensus 200 ~L~~L~L----s~N~LtsLP~~l~-----~nL~~L~Ls~N~LtsLP 236 (754)
T PRK15370 200 QITTLIL----DNNELKSLPENLQ-----GNIKTLYANSNQLTSIP 236 (754)
T ss_pred CCcEEEe----cCCCCCcCChhhc-----cCCCEEECCCCccccCC
Confidence 4556666 6666666665443 24555555555555443
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.57 E-value=0.00069 Score=50.94 Aligned_cols=56 Identities=38% Similarity=0.475 Sum_probs=26.6
Q ss_pred CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
++|.+..++.... .+++|+.|++++|+++.+++. ....+.|..+++++|+++.+|.
T Consensus 148 ~~N~i~~l~~~~~---~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~ 203 (394)
T COG4886 148 SDNKIESLPSPLR---NLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNKISDLPP 203 (394)
T ss_pred cccchhhhhhhhh---ccccccccccCCchhhhhhhh-hhhhhhhhheeccCCccccCch
Confidence 5555554432221 244555555555555555443 1234455555555555555543
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.43 E-value=0.0064 Score=50.41 Aligned_cols=55 Identities=25% Similarity=0.277 Sum_probs=28.6
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l 106 (110)
.++.|.+ .+|.++.+|. ..++|+.|++++|+++.++.. .++|+.|++++|.++.+
T Consensus 223 ~L~~L~L----~~N~Lt~LP~------lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~L 277 (788)
T PRK15387 223 HITTLVI----PDNNLTSLPA------LPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHL 277 (788)
T ss_pred CCCEEEc----cCCcCCCCCC------CCCCCcEEEecCCccCcccCc----ccccceeeccCCchhhh
Confidence 3455555 5555555553 135566777777777666432 23444444444444433
No 29
>KOG0618|consensus
Probab=96.37 E-value=0.00036 Score=58.19 Aligned_cols=62 Identities=29% Similarity=0.400 Sum_probs=46.7
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcc---------------------cccCCcCCcEE
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPD---------------------AFSGLGILIEL 96 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~---------------------~f~~l~~L~~l 96 (110)
+++.|.+ +.|+|..+|+..+. .+..|+.|++++|.++.++.. .+..+++|+.+
T Consensus 384 hLKVLhL----syNrL~~fpas~~~--kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~l 457 (1081)
T KOG0618|consen 384 HLKVLHL----SYNRLNSFPASKLR--KLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVL 457 (1081)
T ss_pred ceeeeee----cccccccCCHHHHh--chHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEE
Confidence 8888999 99999999998888 688899999999988886522 13345566666
Q ss_pred eCCCCCCcc
Q psy17697 97 DLTKNRIHT 105 (110)
Q Consensus 97 ~Ls~N~l~~ 105 (110)
|++.|.++.
T Consensus 458 DlS~N~L~~ 466 (1081)
T KOG0618|consen 458 DLSCNNLSE 466 (1081)
T ss_pred ecccchhhh
Confidence 666666554
No 30
>KOG4579|consensus
Probab=96.37 E-value=0.00018 Score=48.28 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=54.2
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~ 109 (110)
++..+++ +++.+.++++.++.-....+|+.+++++|.++..++..-..++.++.+++++|.|+.+|++
T Consensus 28 E~h~ldL----ssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE 95 (177)
T KOG4579|consen 28 ELHFLDL----SSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE 95 (177)
T ss_pred Hhhhccc----ccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH
Confidence 4556778 8888888888766411456788899999999999888555667899999999999999863
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.29 E-value=0.0032 Score=52.12 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=23.0
Q ss_pred cccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697 68 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 105 (110)
Q Consensus 68 ~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~ 105 (110)
+|+.|++++|+++.++.. +..+++|..++|++|.++.
T Consensus 423 ~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 423 GLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred hhhhhhhccCcccccChH-HhhccCCCeEECCCCCCCc
Confidence 345556666666655433 5566777777777777653
No 32
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.24 E-value=0.0026 Score=27.19 Aligned_cols=16 Identities=44% Similarity=0.607 Sum_probs=8.4
Q ss_pred CCcEEeCCCCCCcccc
Q psy17697 92 ILIELDLTKNRIHTLH 107 (110)
Q Consensus 92 ~L~~l~Ls~N~l~~l~ 107 (110)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5667777777776665
No 33
>KOG1644|consensus
Probab=96.03 E-value=0.0068 Score=42.96 Aligned_cols=62 Identities=26% Similarity=0.308 Sum_probs=53.3
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc-ccccCCcCCcEEeCCCCCCcc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHT 105 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~-~~f~~l~~L~~l~Ls~N~l~~ 105 (110)
.+..|.+ ..|.|..|.+..-. .+++++.|.+.+|+|..+.. +.+..+++|+.|.+-+|.++.
T Consensus 65 rL~tLll----~nNrIt~I~p~L~~--~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 65 RLHTLLL----NNNRITRIDPDLDT--FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred ccceEEe----cCCcceeeccchhh--hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhc
Confidence 7888999 99999999998776 57889999999999888654 456788999999999998765
No 34
>KOG0532|consensus
Probab=95.96 E-value=0.0013 Score=52.68 Aligned_cols=63 Identities=32% Similarity=0.468 Sum_probs=54.0
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~ 109 (110)
.++.+++ +.|+++.+|...+. ++ |+.+.+++|+++.++... ..++.|.++|.+.|.+.++|++
T Consensus 122 ~lt~l~l----s~NqlS~lp~~lC~---lp-Lkvli~sNNkl~~lp~~i-g~~~tl~~ld~s~nei~slpsq 184 (722)
T KOG0532|consen 122 ALTFLDL----SSNQLSHLPDGLCD---LP-LKVLIVSNNKLTSLPEEI-GLLPTLAHLDVSKNEIQSLPSQ 184 (722)
T ss_pred HHHHhhh----ccchhhcCChhhhc---Cc-ceeEEEecCccccCCccc-ccchhHHHhhhhhhhhhhchHH
Confidence 6777889 99999999999986 44 889999999999998874 5788999999999999988763
No 35
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.0028 Score=28.72 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=12.5
Q ss_pred CCcEEeCCCCCCccccCC
Q psy17697 92 ILIELDLTKNRIHTLHPG 109 (110)
Q Consensus 92 ~L~~l~Ls~N~l~~l~~~ 109 (110)
+|++|++++|.++.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp TESEEEETSSEESEEGTT
T ss_pred CccEEECCCCcCEeCChh
Confidence 366777777777777653
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.82 E-value=0.0058 Score=45.97 Aligned_cols=64 Identities=31% Similarity=0.329 Sum_probs=53.7
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcc-cccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLV-NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~-~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~ 109 (110)
.++.+.+ ..|.+..+++.... .. +|+.+++++|++..++.. ...++.|+.|+++.|+++.++..
T Consensus 117 ~l~~L~l----~~n~i~~i~~~~~~---~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~ 181 (394)
T COG4886 117 NLTSLDL----DNNNITDIPPLIGL---LKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKL 181 (394)
T ss_pred ceeEEec----CCcccccCcccccc---chhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhh
Confidence 5778888 99999999988754 43 899999999999998533 46789999999999999998763
No 37
>KOG0531|consensus
Probab=95.81 E-value=0.0054 Score=46.88 Aligned_cols=62 Identities=32% Similarity=0.352 Sum_probs=44.2
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.+++ ..|.|..+... .. .+++|+.+++++|.|+.+.+- ..++.|+.|++++|.|+.+..
T Consensus 96 ~l~~l~l----~~n~i~~i~~~-l~--~~~~L~~L~ls~N~I~~i~~l--~~l~~L~~L~l~~N~i~~~~~ 157 (414)
T KOG0531|consen 96 SLEALDL----YDNKIEKIENL-LS--SLVNLQVLDLSFNKITKLEGL--STLTLLKELNLSGNLISDISG 157 (414)
T ss_pred ceeeeec----cccchhhcccc-hh--hhhcchheeccccccccccch--hhccchhhheeccCcchhccC
Confidence 6667777 88888887763 12 367788888888888887553 345568888888888877653
No 38
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.77 E-value=0.0071 Score=28.24 Aligned_cols=18 Identities=44% Similarity=0.661 Sum_probs=12.8
Q ss_pred cCCcEEeCCCCCCccccC
Q psy17697 91 GILIELDLTKNRIHTLHP 108 (110)
Q Consensus 91 ~~L~~l~Ls~N~l~~l~~ 108 (110)
++|+.|+|++|+|+.+|+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 466777777777777765
No 39
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.77 E-value=0.0071 Score=28.24 Aligned_cols=18 Identities=44% Similarity=0.661 Sum_probs=12.8
Q ss_pred cCCcEEeCCCCCCccccC
Q psy17697 91 GILIELDLTKNRIHTLHP 108 (110)
Q Consensus 91 ~~L~~l~Ls~N~l~~l~~ 108 (110)
++|+.|+|++|+|+.+|+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 466777777777777765
No 40
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.68 E-value=0.0088 Score=27.91 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=18.1
Q ss_pred ccccEEeccCCCCcccCccccc
Q psy17697 67 VNLHNLLLKDCNITDIDPDAFS 88 (110)
Q Consensus 67 ~~L~~l~l~~n~l~~i~~~~f~ 88 (110)
++|+.|++++|+++.+++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 5688889999999998888764
No 41
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.68 E-value=0.0088 Score=27.91 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=18.1
Q ss_pred ccccEEeccCCCCcccCccccc
Q psy17697 67 VNLHNLLLKDCNITDIDPDAFS 88 (110)
Q Consensus 67 ~~L~~l~l~~n~l~~i~~~~f~ 88 (110)
++|+.|++++|+++.+++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 5688889999999998888764
No 42
>KOG1259|consensus
Probab=95.52 E-value=0.0052 Score=46.29 Aligned_cols=38 Identities=26% Similarity=0.175 Sum_probs=29.4
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDID 83 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~ 83 (110)
.++.+++ ++|.|..+..-. .+.+|+.|++++|.++.+.
T Consensus 308 kir~L~l----S~N~i~~v~nLa----~L~~L~~LDLS~N~Ls~~~ 345 (490)
T KOG1259|consen 308 KLRRLIL----SQNRIRTVQNLA----ELPQLQLLDLSGNLLAECV 345 (490)
T ss_pred ceeEEec----cccceeeehhhh----hcccceEeecccchhHhhh
Confidence 7788888 888888887743 4678888888888777654
No 43
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.50 E-value=0.0058 Score=27.65 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=10.3
Q ss_pred ccEEeccCCCCcccCcc
Q psy17697 69 LHNLLLKDCNITDIDPD 85 (110)
Q Consensus 69 L~~l~l~~n~l~~i~~~ 85 (110)
|+.|++++|+++.+++.
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 55666666666655554
No 44
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.79 E-value=0.061 Score=33.77 Aligned_cols=56 Identities=21% Similarity=0.425 Sum_probs=28.3
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 101 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N 101 (110)
.++.+.+ ..+ +..++...|. +...++.+.+.. .+..+....|....+++.+++..+
T Consensus 36 ~l~~i~~----~~~-~~~i~~~~F~--~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 36 SLKSINF----PNN-LTSIGDNAFS--NCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp T-SEEEE----SST-TSCE-TTTTT--T-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred ccccccc----ccc-ccccceeeee--cccccccccccc-cccccccccccccccccccccCcc
Confidence 3445555 443 6666666666 444566666654 555555566666666666666554
No 45
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.66 E-value=0.067 Score=33.59 Aligned_cols=60 Identities=18% Similarity=0.352 Sum_probs=39.3
Q ss_pred eeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 39 ARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 39 l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
++.+.+ . +.+..+....|. +...++.+.+..+ +..+...+|..+.+++.+.+.+ .+..++
T Consensus 14 l~~i~~----~-~~~~~I~~~~F~--~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~ 73 (129)
T PF13306_consen 14 LESITF----P-NTIKKIGENAFS--NCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIG 73 (129)
T ss_dssp --EEEE----T-ST--EE-TTTTT--T-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-
T ss_pred CCEEEE----C-CCeeEeChhhcc--ccccccccccccc-ccccceeeeecccccccccccc-cccccc
Confidence 566777 5 468889999999 7778999999885 9999999999998899999975 444443
No 46
>KOG0531|consensus
Probab=94.57 E-value=0.016 Score=44.37 Aligned_cols=61 Identities=34% Similarity=0.363 Sum_probs=49.2
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.+++ ++|.|..+..-. .++.|+.|++.+|.|+.+.. |..+..|+.+++++|.+..+.+
T Consensus 119 ~L~~L~l----s~N~I~~i~~l~----~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 119 NLQVLDL----SFNKITKLEGLS----TLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred cchheec----cccccccccchh----hccchhhheeccCcchhccC--CccchhhhcccCCcchhhhhhh
Confidence 6788899 999999887655 35679999999999988844 3458889999999998887754
No 47
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=93.63 E-value=0.05 Score=25.84 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=14.6
Q ss_pred cCCcEEeCCCCCCccccC
Q psy17697 91 GILIELDLTKNRIHTLHP 108 (110)
Q Consensus 91 ~~L~~l~Ls~N~l~~l~~ 108 (110)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467888888888888875
No 48
>KOG1859|consensus
Probab=93.39 E-value=0.012 Score=48.78 Aligned_cols=59 Identities=25% Similarity=0.305 Sum_probs=30.5
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 105 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~ 105 (110)
.++.|++ ++|.+..+. ... .+++|+.|+|++|.++.++.-...++. |+.|.+.+|.+++
T Consensus 188 ale~LnL----shNk~~~v~--~Lr--~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t 246 (1096)
T KOG1859|consen 188 ALESLNL----SHNKFTKVD--NLR--RLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT 246 (1096)
T ss_pred Hhhhhcc----chhhhhhhH--HHH--hcccccccccccchhccccccchhhhh-heeeeecccHHHh
Confidence 5555666 666666554 222 356666666666666665433222322 4444555554444
No 49
>KOG4658|consensus
Probab=93.28 E-value=0.048 Score=45.98 Aligned_cols=64 Identities=27% Similarity=0.334 Sum_probs=40.2
Q ss_pred eeeEEEEeeCCCCcc--CCCCCcCccCccCcccccEEeccCC-CCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNN--IPHLPADAFRSTGLVNLHNLLLKDC-NITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~--l~~~~~~~f~~~~~~~L~~l~l~~n-~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
++++|-+ ..|. +..++...|. .++.|..|++++| .+..++.. .+.+-+|++|++++..++.+|.
T Consensus 546 ~L~tLll----~~n~~~l~~is~~ff~--~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~ 612 (889)
T KOG4658|consen 546 KLRTLLL----QRNSDWLLEISGEFFR--SLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPS 612 (889)
T ss_pred ccceEEE----eecchhhhhcCHHHHh--hCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccch
Confidence 4556666 5654 5666666666 5677777777765 34445333 4556667777777777776664
No 50
>KOG3207|consensus
Probab=93.05 E-value=0.066 Score=41.89 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=46.3
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcc-c-----ccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPD-A-----FSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~-~-----f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.+++|++ ++|.+...+...-.+ .++.|..++++.+++..+.-. . ...+++|++|+++.|+|...+
T Consensus 247 ~L~~LdL----s~N~li~~~~~~~~~-~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 247 TLQELDL----SNNNLIDFDQGYKVG-TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred HHhhccc----cCCcccccccccccc-cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence 6778888 888888777555442 367777788888887776532 1 255788999999999885543
No 51
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=92.27 E-value=0.42 Score=41.35 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=28.0
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCC-CCcccCcccccCCcCCcEEeCCCC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDC-NITDIDPDAFSGLGILIELDLTKN 101 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n-~l~~i~~~~f~~l~~L~~l~Ls~N 101 (110)
++..|++ .+|.+..++.+. . .+++|+.++++++ .++.++ . +..+++|+.|+++++
T Consensus 612 ~L~~L~L----~~s~l~~L~~~~-~--~l~~Lk~L~Ls~~~~l~~ip-~-ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 612 NLVKLQM----QGSKLEKLWDGV-H--SLTGLRNIDLRGSKNLKEIP-D-LSMATNLETLKLSDC 667 (1153)
T ss_pred CCcEEEC----cCcccccccccc-c--cCCCCCEEECCCCCCcCcCC-c-cccCCcccEEEecCC
Confidence 3444555 555555554443 2 3555666666554 244442 2 445566666666654
No 52
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=92.27 E-value=0.28 Score=42.44 Aligned_cols=41 Identities=27% Similarity=0.512 Sum_probs=19.7
Q ss_pred cccccEEeccCC-CCcccCcccccCCcCCcEEeCCCC-CCcccc
Q psy17697 66 LVNLHNLLLKDC-NITDIDPDAFSGLGILIELDLTKN-RIHTLH 107 (110)
Q Consensus 66 ~~~L~~l~l~~n-~l~~i~~~~f~~l~~L~~l~Ls~N-~l~~l~ 107 (110)
+++|+.|+++++ .+..++. .+..+.+|+.|+++++ .++.+|
T Consensus 656 l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred CCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcCccC
Confidence 455555555554 2333322 2455555555555553 344444
No 53
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=92.19 E-value=0.065 Score=38.63 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=17.2
Q ss_pred ccccEEeccCCCCcccC----cccccCCcCCcEEeCCCCCCc
Q psy17697 67 VNLHNLLLKDCNITDID----PDAFSGLGILIELDLTKNRIH 104 (110)
Q Consensus 67 ~~L~~l~l~~n~l~~i~----~~~f~~l~~L~~l~Ls~N~l~ 104 (110)
++|+.+++++|.++.-. ...+..+++|+.|++++|.++
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 34555555555544210 112333445555555555544
No 54
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=92.05 E-value=0.069 Score=38.50 Aligned_cols=38 Identities=29% Similarity=0.377 Sum_probs=22.4
Q ss_pred ccccEEeccCCCCcccCc----ccccCCcCCcEEeCCCCCCc
Q psy17697 67 VNLHNLLLKDCNITDIDP----DAFSGLGILIELDLTKNRIH 104 (110)
Q Consensus 67 ~~L~~l~l~~n~l~~i~~----~~f~~l~~L~~l~Ls~N~l~ 104 (110)
++|+.+++++|.++.... ..+..+++|+.|++++|.++
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 466666776666654322 12344566777777777665
No 55
>KOG1859|consensus
Probab=91.56 E-value=0.036 Score=46.08 Aligned_cols=61 Identities=26% Similarity=0.354 Sum_probs=49.0
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
++..|++ +.|.+.++|.-.-. + ..|+.|.+++|-++.+.. ...+.+|+.||++.|.|+.+.
T Consensus 210 ~LkhLDl----syN~L~~vp~l~~~--g-c~L~~L~lrnN~l~tL~g--ie~LksL~~LDlsyNll~~hs 270 (1096)
T KOG1859|consen 210 KLKHLDL----SYNCLRHVPQLSMV--G-CKLQLLNLRNNALTTLRG--IENLKSLYGLDLSYNLLSEHS 270 (1096)
T ss_pred ccccccc----ccchhccccccchh--h-hhheeeeecccHHHhhhh--HHhhhhhhccchhHhhhhcch
Confidence 7888999 99999999975544 2 349999999999888743 357888999999999887654
No 56
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=91.22 E-value=0.22 Score=23.53 Aligned_cols=16 Identities=44% Similarity=0.640 Sum_probs=9.7
Q ss_pred cCCcEEeCCCCCCccc
Q psy17697 91 GILIELDLTKNRIHTL 106 (110)
Q Consensus 91 ~~L~~l~Ls~N~l~~l 106 (110)
.+|+.|++++|+|+++
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 3566666666666554
No 57
>KOG0532|consensus
Probab=90.94 E-value=0.055 Score=43.73 Aligned_cols=54 Identities=24% Similarity=0.330 Sum_probs=31.7
Q ss_pred CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
..|++..+|..... + .|..++++.|++..|+-. |..++.|++|.|.+|.+++-|
T Consensus 197 rRn~l~~lp~El~~---L-pLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 197 RRNHLEDLPEELCS---L-PLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred hhhhhhhCCHHHhC---C-ceeeeecccCceeecchh-hhhhhhheeeeeccCCCCCCh
Confidence 44444444444332 2 255667777777776544 666777777777777666543
No 58
>KOG4658|consensus
Probab=90.43 E-value=0.13 Score=43.37 Aligned_cols=57 Identities=33% Similarity=0.442 Sum_probs=48.3
Q ss_pred eeeEEEEeeCCCCc-cCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCC
Q psy17697 38 AARVLKLKIGEKSN-NIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 102 (110)
Q Consensus 38 ~l~~l~l~~~~~~n-~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~ 102 (110)
.+.+|++ ++| .+..+|...- .+.+|+.|++++..++.+|.. +..+.+|++|++..+.
T Consensus 572 ~LrVLDL----s~~~~l~~LP~~I~---~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 572 LLRVLDL----SGNSSLSKLPSSIG---ELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLNLEVTG 629 (889)
T ss_pred ceEEEEC----CCCCccCcCChHHh---hhhhhhcccccCCCccccchH-HHHHHhhheecccccc
Confidence 7888999 866 6677888774 389999999999999988777 7889999999998775
No 59
>KOG2739|consensus
Probab=88.62 E-value=0.33 Score=35.41 Aligned_cols=40 Identities=25% Similarity=0.171 Sum_probs=24.4
Q ss_pred CcccccEEeccCC--CCcccCcccccCCcCCcEEeCCCCCCc
Q psy17697 65 GLVNLHNLLLKDC--NITDIDPDAFSGLGILIELDLTKNRIH 104 (110)
Q Consensus 65 ~~~~L~~l~l~~n--~l~~i~~~~f~~l~~L~~l~Ls~N~l~ 104 (110)
.+++|+.|.++.| .+..--.-....+++|+++++++|+|+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3677888888887 333211111234478888888888765
No 60
>KOG3207|consensus
Probab=88.09 E-value=0.044 Score=42.81 Aligned_cols=63 Identities=29% Similarity=0.337 Sum_probs=39.9
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc-ccccCCcCCcEEeCCCCCCccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHTL 106 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~-~~f~~l~~L~~l~Ls~N~l~~l 106 (110)
.+..|++ ..|....+....+. -+..|+.|+|++|++-..+. .....++.|..|+++.+.++++
T Consensus 223 sl~~L~L----~~N~~~~~~~~~~~--i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 223 SLEVLYL----EANEIILIKATSTK--ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred cHHHhhh----hcccccceecchhh--hhhHHhhccccCCcccccccccccccccchhhhhccccCcchh
Confidence 6667777 77643333333333 34568888888887766553 2345667777778888877764
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=84.86 E-value=1.9 Score=33.77 Aligned_cols=57 Identities=23% Similarity=0.298 Sum_probs=30.2
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccC-CCCcccCcccccCCcCCcEEeCCCC-CCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKD-CNITDIDPDAFSGLGILIELDLTKN-RIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~-n~l~~i~~~~f~~l~~L~~l~Ls~N-~l~~l~ 107 (110)
.++.|++ +++.|+.+| .+. .+|+.|.+++ +.++.++.. + .++|+.|.++++ .++.+|
T Consensus 53 ~l~~L~I----s~c~L~sLP--~LP----~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 53 ASGRLYI----KDCDIESLP--VLP----NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred CCCEEEe----CCCCCcccC--CCC----CCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccc
Confidence 5667777 777777776 222 4566666665 344333221 1 234555555555 444443
No 62
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=84.78 E-value=0.61 Score=43.59 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=26.4
Q ss_pred CCccCCCCCcCccCccCcccccEEeccCCCCcc
Q psy17697 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITD 81 (110)
Q Consensus 49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~ 81 (110)
++|+|+.++.+.|. .+.+|+.|+|++|.+..
T Consensus 3 SnN~LstLp~g~F~--~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 3 SNNKISTIEEGICA--NLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCcCCccChHHhc--cCCCceEEEeeCCcccc
Confidence 78999999999998 78889999999887654
No 63
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.45 E-value=0.75 Score=20.66 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=8.4
Q ss_pred cCCcEEeCCCCCCc
Q psy17697 91 GILIELDLTKNRIH 104 (110)
Q Consensus 91 ~~L~~l~Ls~N~l~ 104 (110)
++|+.|++++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 56777777777765
No 64
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.63 E-value=1.7 Score=20.45 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=10.0
Q ss_pred cCCcEEeCCCCCCc
Q psy17697 91 GILIELDLTKNRIH 104 (110)
Q Consensus 91 ~~L~~l~Ls~N~l~ 104 (110)
++|+.|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777788877764
No 65
>KOG2739|consensus
Probab=77.27 E-value=1.7 Score=31.83 Aligned_cols=62 Identities=23% Similarity=0.204 Sum_probs=35.7
Q ss_pred eeeEEEEeeCCCCc--cCCCCCcCccCccCcccccEEeccCCCCcccCc-ccccCCcCCcEEeCCCCCCcc
Q psy17697 38 AARVLKLKIGEKSN--NIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHT 105 (110)
Q Consensus 38 ~l~~l~l~~~~~~n--~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~-~~f~~l~~L~~l~Ls~N~l~~ 105 (110)
+++.|.+ +.| ++..=-..... ..++|+.+++++|+|+.+.. .....+..|..|++.++..+.
T Consensus 66 ~LkkL~l----sdn~~~~~~~l~vl~e--~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 66 KLKKLEL----SDNYRRVSGGLEVLAE--KAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcc----cCCcccccccceehhh--hCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 6667777 777 33321111112 24788888888888776432 223445566677777766544
No 66
>KOG2982|consensus
Probab=77.16 E-value=2.6 Score=32.08 Aligned_cols=61 Identities=21% Similarity=0.255 Sum_probs=32.7
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCccc-ccCCcCCcEEeCCCCCCc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDA-FSGLGILIELDLTKNRIH 104 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~-f~~l~~L~~l~Ls~N~l~ 104 (110)
.+++|.+ +.|.+.......-- ...+|+.+.+.+..+..-..+. ...+|.++.+.+|.|.+.
T Consensus 98 ~l~~LNl----s~N~L~s~I~~lp~--p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 98 ALTTLNL----SCNSLSSDIKSLPL--PLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred cceEeec----cCCcCCCccccCcc--cccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 6666666 66666543332211 2556666666666554433332 244566666666666443
No 67
>KOG0473|consensus
Probab=75.67 E-value=0.064 Score=39.18 Aligned_cols=63 Identities=22% Similarity=0.131 Sum_probs=44.2
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
..+.|++ +.|++-.+-...-. ++.+..++++.|++..++.+ |..+..+..+++..|.++..|-
T Consensus 43 r~tvld~----~s~r~vn~~~n~s~---~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p~ 105 (326)
T KOG0473|consen 43 RVTVLDL----SSNRLVNLGKNFSI---LTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQPK 105 (326)
T ss_pred eeeeehh----hhhHHHhhccchHH---HHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCCc
Confidence 6667777 88877665554433 67778888888888888776 5666677777777777776653
No 68
>KOG2123|consensus
Probab=68.88 E-value=0.42 Score=35.89 Aligned_cols=57 Identities=28% Similarity=0.312 Sum_probs=41.5
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcc-cccCCcCCcEEeCCCCC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPD-AFSGLGILIELDLTKNR 102 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~-~f~~l~~L~~l~Ls~N~ 102 (110)
.+++|.+ +-|.|+.+.+ |. .-+.|+.|+|..|.|..++.- -+.++++|+.|.|..|.
T Consensus 42 ~lEVLsL----SvNkIssL~p--l~--rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 42 LLEVLSL----SVNKISSLAP--LQ--RCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred cceeEEe----eccccccchh--HH--HHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 6777888 8888887654 33 357788888888888887652 34678888888887775
No 69
>KOG3665|consensus
Probab=68.10 E-value=2 Score=35.62 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=41.1
Q ss_pred eeeEEEEeeCCCCccC--CCCCcCccCccCcccccEEeccCCCCcccC-cccccCCcCCcEEeCCCCCCccc
Q psy17697 38 AARVLKLKIGEKSNNI--PHLPADAFRSTGLVNLHNLLLKDCNITDID-PDAFSGLGILIELDLTKNRIHTL 106 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l--~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~-~~~f~~l~~L~~l~Ls~N~l~~l 106 (110)
+++.|++ ++... ...+..... .+|+|+.|.+++-.+..-+ ...+.++++|..||+|+.+++.+
T Consensus 123 nL~~LdI----~G~~~~s~~W~~kig~--~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl 188 (699)
T KOG3665|consen 123 NLQHLDI----SGSELFSNGWPKKIGT--MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL 188 (699)
T ss_pred hhhhcCc----cccchhhccHHHHHhh--hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc
Confidence 5666777 66422 123333333 4788888888887654433 24456788899999999888765
No 70
>KOG2123|consensus
Probab=67.38 E-value=0.27 Score=36.83 Aligned_cols=54 Identities=24% Similarity=0.240 Sum_probs=41.8
Q ss_pred CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|..|. ... .++.|+.|.|+-|.|+.+.+ |..+..|+.|+|-.|.|..+.+
T Consensus 27 wg~~L~DIs--ic~--kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldE 80 (388)
T KOG2123|consen 27 WGCGLDDIS--ICE--KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDE 80 (388)
T ss_pred cCCCccHHH--HHH--hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHH
Confidence 666666543 223 47889999999999999844 5788999999999999987753
No 71
>KOG3665|consensus
Probab=66.64 E-value=2.1 Score=35.43 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=22.5
Q ss_pred CchhhhHHhhhcccccCCCCCCCcccccCceeEEEEeeeEEEEeeCCCCccCCCC
Q psy17697 2 GWSSRCSDLLIDIDQLGLTVESCFNTWLSVGKHHALAARVLKLKIGEKSNNIPHL 56 (110)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~cp~~c~c~~~~~~~~~~l~l~~l~l~~~~~~n~l~~~ 56 (110)
+|+...+..+..+..+..|-..-...+....|...-++..|++ ++.+++.+
T Consensus 138 ~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDI----S~TnI~nl 188 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDI----SGTNISNL 188 (699)
T ss_pred cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeec----CCCCccCc
Confidence 4555555555555444443322222211111111116667777 76666644
No 72
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....
Probab=66.52 E-value=2.4 Score=20.09 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=10.0
Q ss_pred CCCCCCcccccCce
Q psy17697 19 LTVESCFNTWLSVG 32 (110)
Q Consensus 19 ~cp~~c~c~~~~~~ 32 (110)
.||..|.|....+.
T Consensus 1 ~CP~~C~C~~~~V~ 14 (28)
T PF01462_consen 1 ACPRPCTCSGLTVD 14 (28)
T ss_dssp SSETTSEEETTEEE
T ss_pred CcCCCCEecCCEeE
Confidence 48999999855333
No 73
>smart00013 LRRNT Leucine rich repeat N-terminal domain.
Probab=64.30 E-value=2.8 Score=20.51 Aligned_cols=11 Identities=9% Similarity=-0.006 Sum_probs=8.7
Q ss_pred CCCCCCccccc
Q psy17697 19 LTVESCFNTWL 29 (110)
Q Consensus 19 ~cp~~c~c~~~ 29 (110)
.||..|.|...
T Consensus 1 ~CP~~C~C~~~ 11 (33)
T smart00013 1 ACPAPCNCSGT 11 (33)
T ss_pred CcCCCCEECCC
Confidence 49999999743
No 74
>KOG2982|consensus
Probab=61.75 E-value=3.2 Score=31.63 Aligned_cols=60 Identities=20% Similarity=0.079 Sum_probs=35.6
Q ss_pred eeeEEEEeeCCCCccCCCCCcC--ccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPAD--AFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~--~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l 103 (110)
.+..+++ .+|.|+....- ... .++.++.|+++.|++...-...-....+|+.+.|.+..+
T Consensus 72 ~v~elDL----~~N~iSdWseI~~ile--~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 72 DVKELDL----TGNLISDWSEIGAILE--QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred hhhhhhc----ccchhccHHHHHHHHh--cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 5566777 77777764432 234 467788888887776553222112345667777766654
No 75
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=58.89 E-value=5.9 Score=37.61 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=28.9
Q ss_pred eccCCCCcccCcccccCCcCCcEEeCCCCCCc
Q psy17697 73 LLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104 (110)
Q Consensus 73 ~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~ 104 (110)
+|++|+|+.|++..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57899999999999999999999999999764
No 76
>PRK15386 type III secretion protein GogB; Provisional
Probab=54.76 E-value=16 Score=28.70 Aligned_cols=36 Identities=22% Similarity=0.471 Sum_probs=20.3
Q ss_pred eeeEEEEeeCCCC-ccCCCCCcCccCccCcccccEEeccCC-CCccc
Q psy17697 38 AARVLKLKIGEKS-NNIPHLPADAFRSTGLVNLHNLLLKDC-NITDI 82 (110)
Q Consensus 38 ~l~~l~l~~~~~~-n~l~~~~~~~f~~~~~~~L~~l~l~~n-~l~~i 82 (110)
.++.|.+ ++ +.++.+|... ..+|+.|.++++ .+..+
T Consensus 73 sLtsL~L----snc~nLtsLP~~L-----P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 73 ELTEITI----ENCNNLTTLPGSI-----PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred CCcEEEc----cCCCCcccCCchh-----hhhhhheEccCccccccc
Confidence 5667777 54 4555555422 245777777766 44433
No 77
>KOG1909|consensus
Probab=51.88 E-value=4.8 Score=30.90 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=5.5
Q ss_pred ccccEEeccCCCC
Q psy17697 67 VNLHNLLLKDCNI 79 (110)
Q Consensus 67 ~~L~~l~l~~n~l 79 (110)
++|+.|++.+|-+
T Consensus 213 ~~LevLdl~DNtf 225 (382)
T KOG1909|consen 213 PHLEVLDLRDNTF 225 (382)
T ss_pred Ccceeeecccchh
Confidence 3444444444433
No 78
>KOG3763|consensus
Probab=51.53 E-value=8.1 Score=31.36 Aligned_cols=11 Identities=27% Similarity=0.208 Sum_probs=5.4
Q ss_pred ccccEEeccCC
Q psy17697 67 VNLHNLLLKDC 77 (110)
Q Consensus 67 ~~L~~l~l~~n 77 (110)
++|+.|+|++|
T Consensus 244 pklk~L~LS~N 254 (585)
T KOG3763|consen 244 PKLKTLDLSHN 254 (585)
T ss_pred chhheeecccc
Confidence 44455555554
No 79
>KOG1909|consensus
Probab=47.27 E-value=13 Score=28.66 Aligned_cols=62 Identities=24% Similarity=0.215 Sum_probs=47.2
Q ss_pred eeeEEEEeeCCCCccCCCCCc----CccCccCcccccEEeccCCCCccc----CcccccCCcCCcEEeCCCCCCcc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPA----DAFRSTGLVNLHNLLLKDCNITDI----DPDAFSGLGILIELDLTKNRIHT 105 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~----~~f~~~~~~~L~~l~l~~n~l~~i----~~~~f~~l~~L~~l~Ls~N~l~~ 105 (110)
.++++.. ..|.+..-+. ..|+ ..+.|+.+.++.|.|..- -..+|..++.|+.|||.+|-++.
T Consensus 158 ~Lrv~i~----~rNrlen~ga~~~A~~~~--~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 158 KLRVFIC----GRNRLENGGATALAEAFQ--SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL 227 (382)
T ss_pred ceEEEEe----eccccccccHHHHHHHHH--hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence 7888888 8888876444 3455 567899999999976542 23467889999999999998764
No 80
>smart00286 PTI Plant trypsin inhibitors.
Probab=41.17 E-value=19 Score=17.32 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=17.5
Q ss_pred hhHHhhhcccccCCCCCCCccccc
Q psy17697 6 RCSDLLIDIDQLGLTVESCFNTWL 29 (110)
Q Consensus 6 ~~~~~~~~~~~~~~cp~~c~c~~~ 29 (110)
.|..++---....+|+..|.|...
T Consensus 2 ~CPrIlm~Ck~DsDCl~~CiC~~~ 25 (29)
T smart00286 2 ICPRILMECKRDSDCMAECICLAN 25 (29)
T ss_pred CCchhhhccccccCcccCCEEccc
Confidence 355666666778889999998653
No 81
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=40.83 E-value=22 Score=26.91 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=7.1
Q ss_pred CcCCcEEeCCCCCCc
Q psy17697 90 LGILIELDLTKNRIH 104 (110)
Q Consensus 90 l~~L~~l~Ls~N~l~ 104 (110)
...|.+|.+++|.+-
T Consensus 119 ~t~l~HL~l~NnGlG 133 (388)
T COG5238 119 STDLVHLKLNNNGLG 133 (388)
T ss_pred CCCceeEEeecCCCC
Confidence 344455555555443
No 82
>KOG3763|consensus
Probab=39.13 E-value=15 Score=29.84 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=25.9
Q ss_pred CcccccEEeccCCCCcccCc--ccccCCcCCcEEeCCCC
Q psy17697 65 GLVNLHNLLLKDCNITDIDP--DAFSGLGILIELDLTKN 101 (110)
Q Consensus 65 ~~~~L~~l~l~~n~l~~i~~--~~f~~l~~L~~l~Ls~N 101 (110)
..+.+..+.+++|++..++. ..-...++|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 35677788888888777653 12244577888888888
No 83
>KOG0473|consensus
Probab=35.68 E-value=2.2 Score=31.41 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=36.0
Q ss_pred cccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109 (110)
Q Consensus 66 ~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~ 109 (110)
....+.++++.|++-.+-.+ |+.+..+..++++.|++..+|.+
T Consensus 41 ~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d 83 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKD 83 (326)
T ss_pred cceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhh
Confidence 45577889999998888666 88888999999999999988764
No 84
>cd00150 PlantTI Plant trypsin inhibitors such as squash trypsin inhibitor. Plant proteinase inhibitors play important roles in natural plant defense. Proteinase inhibitors from squash seeds form an uniform family of small proteins cross-linked with three disulfide bridges.
Probab=31.02 E-value=29 Score=16.39 Aligned_cols=22 Identities=9% Similarity=0.139 Sum_probs=14.5
Q ss_pred HHhhhcccccCCCCCCCccccc
Q psy17697 8 SDLLIDIDQLGLTVESCFNTWL 29 (110)
Q Consensus 8 ~~~~~~~~~~~~cp~~c~c~~~ 29 (110)
..++.--....+|...|.|...
T Consensus 2 PrIlm~Ck~DsDCl~~CiC~~~ 23 (27)
T cd00150 2 PRILMECKRDSDCLAECICLEN 23 (27)
T ss_pred cchheeccccccccCCCEEccc
Confidence 3344445567789989988653
No 85
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=20.73 E-value=59 Score=24.34 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=16.8
Q ss_pred cCCcEEeCCCCCCccccCCC
Q psy17697 91 GILIELDLTKNRIHTLHPGK 110 (110)
Q Consensus 91 ~~L~~l~Ls~N~l~~l~~~~ 110 (110)
..|...||+++++++++++|
T Consensus 77 ~Gl~VYDLsGkqLqs~~~Gk 96 (364)
T COG4247 77 AGLRVYDLSGKQLQSVNPGK 96 (364)
T ss_pred CCeEEEecCCCeeeecCCCc
Confidence 35788899999999998876
No 86
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=20.08 E-value=91 Score=13.61 Aligned_cols=14 Identities=21% Similarity=0.567 Sum_probs=6.5
Q ss_pred cEEeCCCCCCcccc
Q psy17697 94 IELDLTKNRIHTLH 107 (110)
Q Consensus 94 ~~l~Ls~N~l~~l~ 107 (110)
-.|++...++..+.
T Consensus 3 VeL~m~~S~lekLW 16 (20)
T PF07725_consen 3 VELNMPYSKLEKLW 16 (20)
T ss_pred EEEECCCCChHHhc
Confidence 34445555544443
No 87
>PF00299 Squash: Squash family serine protease inhibitor; InterPro: IPR000737 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The squash inhibitors form one of a number of serine proteinase inhibitor families. They belong to MEROPS inhibitor family I7, clan IE. They are generally annotated as either trypsin or elastase inhibitors (MEROPS peptidase family S1, IPR001254 from INTERPRO). The proteins, found exclusively in the seeds of the cucurbitaceae, e.g. Citrullus lanatus (watermelon), Cucumis sativus (cucumber), Momordica charantia (balsam pear), are approximately 30 residues in length and contain 6 Cys residues, which form 3 disulphide bonds []. The inhibitors function by being taken up by a serine protease (such as trypsin), which cleaves the peptide bond between Arg/Lys and Ile residues in the N-terminal portion of the protein [, ]. Structural studies have shown that the inhibitor has an ellipsoidal shape, and is largely composed of beta-turns []. The fold and Cys connectivity of the proteins resembles that of potato carboxypeptidase A inhibitor [].; GO: 0004867 serine-type endopeptidase inhibitor activity; PDB: 1MCT_I 2IT8_A 1HA9_A 1IB9_A 2C4B_B 2PO8_A 1F2S_I 1W7Z_H 2LET_A 2ETI_A ....
Probab=20.06 E-value=22 Score=17.10 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=14.6
Q ss_pred hHHhhhcccccCCCCCCCccccc
Q psy17697 7 CSDLLIDIDQLGLTVESCFNTWL 29 (110)
Q Consensus 7 ~~~~~~~~~~~~~cp~~c~c~~~ 29 (110)
|..++..-....+|+..|.|...
T Consensus 3 CPrIlm~Ck~DsDCl~~C~C~~~ 25 (29)
T PF00299_consen 3 CPRILMECKRDSDCLAGCICLEN 25 (29)
T ss_dssp EESBSCB-SSGGGSSTTEEEETT
T ss_pred CchhhhhcccccCcccCCEEccC
Confidence 34444455566779999988654
Done!