Query psy17697
Match_columns 110
No_of_seqs 108 out of 2396
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 20:42:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g39_A Variable lymphocyte rec 99.5 3.1E-14 1.1E-18 94.9 6.0 85 19-109 2-96 (170)
2 2r9u_A Variable lymphocyte rec 99.5 1.5E-13 5E-18 92.1 6.9 88 16-109 2-99 (174)
3 2v9t_B SLIT homolog 2 protein 99.4 3.6E-13 1.2E-17 92.9 5.5 86 17-108 2-97 (220)
4 2ifg_A High affinity nerve gro 99.4 5.6E-13 1.9E-17 96.7 6.1 84 20-109 1-98 (347)
5 2o6r_A Variable lymphocyte rec 99.4 8.4E-13 2.9E-17 87.8 6.4 83 20-108 1-93 (177)
6 2wfh_A SLIT homolog 2 protein 99.4 1.1E-12 3.7E-17 89.1 6.1 85 18-108 2-119 (193)
7 2o6s_A Variable lymphocyte rec 99.3 1.8E-12 6E-17 88.1 6.4 83 20-108 1-93 (208)
8 1w8a_A SLIT protein; signaling 99.3 2.2E-12 7.6E-17 87.2 5.6 84 19-108 1-95 (192)
9 2v70_A SLIT-2, SLIT homolog 2 99.3 6.8E-12 2.3E-16 86.5 6.2 18 18-35 3-20 (220)
10 2xot_A Amphoterin-induced prot 99.2 2.2E-11 7.5E-16 89.3 5.9 89 15-108 7-105 (361)
11 4g8a_A TOLL-like receptor 4; l 99.2 3.5E-11 1.2E-15 92.0 5.6 65 38-108 53-117 (635)
12 3zyi_A Leucine-rich repeat-con 99.1 1E-10 3.4E-15 87.8 7.3 86 17-108 43-140 (452)
13 2xwt_C Thyrotropin receptor; s 99.1 8.1E-11 2.8E-15 81.3 5.6 85 18-108 2-98 (239)
14 3zyj_A Leucine-rich repeat-con 99.1 2E-10 6.8E-15 85.9 7.5 86 17-108 32-129 (440)
15 2id5_A Lingo-1, leucine rich r 99.1 2.5E-10 8.5E-15 85.8 7.0 84 19-108 2-97 (477)
16 3e6j_A Variable lymphocyte rec 99.1 2.4E-10 8.3E-15 79.0 6.3 83 20-108 13-105 (229)
17 4ay9_X Follicle-stimulating ho 99.0 1.3E-10 4.5E-15 84.7 4.6 83 20-108 2-97 (350)
18 1xku_A Decorin; proteoglycan, 99.0 3.4E-10 1.2E-14 81.5 6.2 88 15-108 20-117 (330)
19 2z66_A Variable lymphocyte rec 99.0 1.2E-10 4.1E-15 82.9 3.7 82 20-107 1-94 (306)
20 1ozn_A Reticulon 4 receptor; N 99.0 3.6E-10 1.2E-14 79.8 6.0 84 19-108 1-98 (285)
21 2ft3_A Biglycan; proteoglycan, 99.0 4E-10 1.4E-14 81.3 5.8 86 17-108 24-119 (332)
22 2v9t_B SLIT homolog 2 protein 98.9 2.2E-09 7.4E-14 73.9 6.8 65 38-108 81-145 (220)
23 3m19_A Variable lymphocyte rec 98.9 1.5E-09 5E-14 75.7 5.2 64 38-107 36-99 (251)
24 1w8a_A SLIT protein; signaling 98.9 3.3E-09 1.1E-13 71.5 6.2 65 38-108 55-119 (192)
25 3e6j_A Variable lymphocyte rec 98.9 4E-09 1.4E-13 72.8 6.7 65 38-108 65-129 (229)
26 2z80_A TOLL-like receptor 2, v 98.9 3.2E-09 1.1E-13 77.1 6.0 84 17-107 21-116 (353)
27 2v70_A SLIT-2, SLIT homolog 2 98.9 4.8E-09 1.6E-13 72.1 6.5 65 38-108 82-146 (220)
28 3g39_A Variable lymphocyte rec 98.9 4.9E-09 1.7E-13 69.5 6.1 62 38-105 55-116 (170)
29 2o6q_A Variable lymphocyte rec 98.9 1.4E-08 4.8E-13 71.3 8.7 65 38-108 38-102 (270)
30 2o6r_A Variable lymphocyte rec 98.8 6.6E-09 2.3E-13 68.7 6.6 65 38-108 53-117 (177)
31 3v47_A TOLL-like receptor 5B a 98.8 2.6E-09 8.9E-14 79.4 5.1 85 18-108 2-96 (455)
32 4g8a_A TOLL-like receptor 4; l 98.8 3.8E-09 1.3E-13 80.7 6.0 65 38-108 77-141 (635)
33 2r9u_A Variable lymphocyte rec 98.8 8.2E-09 2.8E-13 68.8 6.2 64 38-107 58-121 (174)
34 3t6q_A CD180 antigen; protein- 98.8 6.9E-09 2.3E-13 79.8 6.2 84 19-108 3-98 (606)
35 2wfh_A SLIT homolog 2 protein 98.8 1.2E-08 4E-13 69.0 6.6 62 41-109 35-96 (193)
36 3m19_A Variable lymphocyte rec 98.8 1.4E-08 4.9E-13 70.6 6.7 65 38-108 108-172 (251)
37 1p9a_G Platelet glycoprotein I 98.8 1.4E-08 4.9E-13 72.4 6.7 57 49-107 132-188 (290)
38 1p9a_G Platelet glycoprotein I 98.8 1.5E-08 5.2E-13 72.3 6.7 66 38-109 101-166 (290)
39 2o6s_A Variable lymphocyte rec 98.8 1.7E-08 6E-13 68.1 6.7 65 38-108 77-141 (208)
40 3rfe_A Platelet glycoprotein I 98.7 3.3E-08 1.1E-12 63.5 7.0 66 19-104 1-68 (130)
41 2z62_A TOLL-like receptor 4, v 98.7 2.6E-08 9E-13 69.8 6.2 64 38-107 29-92 (276)
42 2xot_A Amphoterin-induced prot 98.7 1.6E-08 5.6E-13 73.9 5.0 64 38-107 89-152 (361)
43 2o6q_A Variable lymphocyte rec 98.7 4.7E-08 1.6E-12 68.6 6.7 65 38-108 134-198 (270)
44 3a79_B TLR6, VLRB.59, TOLL-lik 98.6 5E-08 1.7E-12 74.8 6.3 66 38-109 53-118 (562)
45 2z81_A CD282 antigen, TOLL-lik 98.6 4E-08 1.4E-12 74.6 5.2 63 38-106 27-89 (549)
46 3vq2_A TLR4, TOLL-like recepto 98.6 5.7E-08 1.9E-12 74.6 6.1 64 38-107 33-96 (606)
47 3rfs_A Internalin B, repeat mo 98.6 1E-07 3.5E-12 67.0 6.7 64 38-107 110-173 (272)
48 3rfs_A Internalin B, repeat mo 98.6 1.2E-07 4.1E-12 66.7 6.7 64 38-107 134-197 (272)
49 3zyj_A Leucine-rich repeat-con 98.6 7.5E-08 2.6E-12 71.9 5.8 65 38-108 208-272 (440)
50 2z63_A TOLL-like receptor 4, v 98.6 1E-07 3.5E-12 72.4 6.6 64 38-107 53-116 (570)
51 3zyi_A Leucine-rich repeat-con 98.6 8.4E-08 2.9E-12 71.8 5.9 65 38-108 100-164 (452)
52 1a9n_A U2A', U2A'; complex (nu 98.5 6E-08 2E-12 64.1 4.1 64 38-107 65-129 (176)
53 1ziw_A TOLL-like receptor 3; i 98.5 5.4E-08 1.9E-12 75.8 4.2 57 49-107 57-113 (680)
54 2z7x_B TOLL-like receptor 1, v 98.5 7.1E-08 2.4E-12 72.9 4.5 65 38-108 22-86 (520)
55 1ozn_A Reticulon 4 receptor; N 98.5 2.4E-07 8.1E-12 65.2 6.6 36 68-103 130-165 (285)
56 2xwt_C Thyrotropin receptor; s 98.5 1.4E-07 4.9E-12 64.8 5.4 65 38-109 156-223 (239)
57 3o6n_A APL1; leucine-rich repe 98.5 1.8E-07 6.1E-12 68.5 6.1 65 38-108 70-134 (390)
58 1a9n_A U2A', U2A'; complex (nu 98.5 8E-08 2.8E-12 63.5 3.6 63 38-108 43-105 (176)
59 2z80_A TOLL-like receptor 2, v 98.5 1.7E-07 5.7E-12 68.0 5.2 65 38-108 77-141 (353)
60 3v47_A TOLL-like receptor 5B a 98.5 1.8E-07 6.1E-12 69.5 5.5 65 38-108 324-388 (455)
61 3o6n_A APL1; leucine-rich repe 98.5 3.3E-07 1.1E-11 67.1 6.8 64 38-107 94-157 (390)
62 1ziw_A TOLL-like receptor 3; i 98.5 2.5E-07 8.4E-12 72.1 6.2 64 38-107 537-600 (680)
63 2z62_A TOLL-like receptor 4, v 98.5 2.5E-07 8.4E-12 64.8 5.5 64 38-107 53-116 (276)
64 2ifg_A High affinity nerve gro 98.4 2.5E-07 8.6E-12 66.8 5.4 60 38-104 57-116 (347)
65 4ay9_X Follicle-stimulating ho 98.4 2.3E-07 7.8E-12 67.5 4.8 65 38-109 155-220 (350)
66 2z66_A Variable lymphocyte rec 98.4 4.6E-07 1.6E-11 64.2 6.2 65 38-108 176-240 (306)
67 3vq2_A TLR4, TOLL-like recepto 98.4 3.3E-07 1.1E-11 70.4 5.8 64 38-107 57-120 (606)
68 2id5_A Lingo-1, leucine rich r 98.4 2.8E-07 9.6E-12 69.1 5.2 65 38-108 249-313 (477)
69 3oja_B Anopheles plasmodium-re 98.4 4.2E-07 1.4E-11 70.4 6.1 65 38-108 76-140 (597)
70 3oja_B Anopheles plasmodium-re 98.4 5.5E-07 1.9E-11 69.8 6.8 65 38-108 100-164 (597)
71 2ell_A Acidic leucine-rich nuc 98.4 2.7E-07 9.2E-12 60.3 4.2 64 38-107 72-136 (168)
72 1xku_A Decorin; proteoglycan, 98.4 4E-07 1.4E-11 65.3 5.4 56 49-107 224-279 (330)
73 2ell_A Acidic leucine-rich nuc 98.4 2.7E-07 9.1E-12 60.3 4.0 66 38-109 96-165 (168)
74 2z63_A TOLL-like receptor 4, v 98.4 4.4E-07 1.5E-11 69.0 5.7 65 38-108 29-93 (570)
75 2ft3_A Biglycan; proteoglycan, 98.4 2.8E-07 9.5E-12 66.2 3.9 63 38-107 218-280 (332)
76 2je0_A Acidic leucine-rich nuc 98.3 5.6E-07 1.9E-11 57.6 4.1 65 38-108 65-130 (149)
77 1dce_A Protein (RAB geranylger 98.3 8.1E-07 2.8E-11 69.1 5.5 63 38-108 487-550 (567)
78 3t6q_A CD180 antigen; protein- 98.3 7.6E-07 2.6E-11 68.4 5.3 63 38-106 58-120 (606)
79 2je0_A Acidic leucine-rich nuc 98.3 3.1E-07 1.1E-11 58.8 2.7 62 38-107 43-104 (149)
80 2z81_A CD282 antigen, TOLL-lik 98.3 8.1E-07 2.8E-11 67.4 5.1 63 38-106 51-113 (549)
81 1ogq_A PGIP-2, polygalacturona 98.3 5.1E-07 1.8E-11 64.8 3.6 75 23-104 33-114 (313)
82 3j0a_A TOLL-like receptor 5; m 98.3 8.7E-07 3E-11 71.2 5.2 62 38-105 49-111 (844)
83 3a79_B TLR6, VLRB.59, TOLL-lik 98.2 2.4E-06 8.2E-11 65.4 6.9 62 39-109 33-94 (562)
84 1xeu_A Internalin C; cellular 98.2 2.4E-06 8.1E-11 60.0 5.8 60 38-107 42-101 (263)
85 4b8c_D Glucose-repressible alc 98.2 1.2E-06 4.2E-11 69.8 4.7 62 38-107 225-286 (727)
86 4fcg_A Uncharacterized protein 98.2 1.5E-06 5.1E-11 62.8 4.5 63 38-108 82-144 (328)
87 1dce_A Protein (RAB geranylger 98.2 2.5E-06 8.6E-11 66.3 6.0 61 38-107 464-524 (567)
88 3o53_A Protein LRIM1, AGAP0063 98.1 1.1E-06 3.6E-11 63.0 2.8 62 38-107 35-96 (317)
89 3oja_A Leucine-rich immune mol 98.1 1.6E-06 5.4E-11 66.0 3.9 63 38-108 35-97 (487)
90 4ezg_A Putative uncharacterize 98.1 2.6E-06 9.1E-11 57.0 4.5 63 38-106 89-152 (197)
91 3j0a_A TOLL-like receptor 5; m 98.1 3.8E-06 1.3E-10 67.5 6.0 65 38-108 291-355 (844)
92 4b8c_D Glucose-repressible alc 98.1 1.8E-06 6.3E-11 68.8 4.0 62 38-107 248-309 (727)
93 3o53_A Protein LRIM1, AGAP0063 98.1 3.6E-06 1.2E-10 60.2 4.9 64 38-107 121-185 (317)
94 3rgz_A Protein brassinosteroid 98.1 5.4E-06 1.8E-10 66.0 6.0 61 38-104 633-693 (768)
95 3sb4_A Hypothetical leucine ri 98.0 5.2E-06 1.8E-10 59.7 5.0 63 38-108 251-314 (329)
96 3sb4_A Hypothetical leucine ri 98.0 4.4E-06 1.5E-10 60.1 4.5 63 38-108 227-290 (329)
97 2z7x_B TOLL-like receptor 1, v 98.0 7.3E-06 2.5E-10 61.9 5.8 60 38-104 422-481 (520)
98 1wwl_A Monocyte differentiatio 98.0 8.3E-06 2.8E-10 58.2 5.7 60 38-106 229-289 (312)
99 3rgz_A Protein brassinosteroid 98.0 5.7E-06 2E-10 65.9 5.3 62 38-105 657-718 (768)
100 1ogq_A PGIP-2, polygalacturona 98.0 2E-06 7E-11 61.6 2.4 39 66-104 124-162 (313)
101 3oja_A Leucine-rich immune mol 98.0 4.6E-06 1.6E-10 63.4 4.5 64 38-107 121-185 (487)
102 1wwl_A Monocyte differentiatio 98.0 5.2E-06 1.8E-10 59.3 4.2 37 67-103 149-185 (312)
103 4eco_A Uncharacterized protein 98.0 1.1E-05 3.7E-10 63.1 6.2 65 38-108 458-530 (636)
104 4eco_A Uncharacterized protein 98.0 5.8E-06 2E-10 64.7 4.3 65 38-108 434-505 (636)
105 1h6t_A Internalin B; cell adhe 98.0 1.1E-05 3.6E-10 57.4 5.3 59 38-106 135-193 (291)
106 4fmz_A Internalin; leucine ric 98.0 6.9E-06 2.4E-10 58.9 4.4 63 38-108 266-328 (347)
107 1h6u_A Internalin H; cell adhe 97.9 1.1E-05 3.7E-10 57.7 5.1 7 49-55 115-121 (308)
108 1xeu_A Internalin C; cellular 97.9 1.3E-05 4.5E-10 56.2 5.4 39 67-107 106-144 (263)
109 1h6u_A Internalin H; cell adhe 97.9 1.3E-05 4.5E-10 57.3 5.5 39 66-106 106-144 (308)
110 4glp_A Monocyte differentiatio 97.9 8.9E-06 3E-10 57.9 4.4 61 38-104 146-210 (310)
111 4ezg_A Putative uncharacterize 97.9 1.6E-05 5.4E-10 53.2 5.1 60 38-105 67-126 (197)
112 1h6t_A Internalin B; cell adhe 97.9 1.8E-05 6E-10 56.3 5.5 58 38-105 69-126 (291)
113 4fcg_A Uncharacterized protein 97.9 2.9E-05 9.8E-10 56.0 6.3 50 49-101 214-263 (328)
114 4glp_A Monocyte differentiatio 97.9 1.7E-05 5.9E-10 56.4 4.9 63 38-107 225-288 (310)
115 4fmz_A Internalin; leucine ric 97.8 2.2E-05 7.7E-10 56.2 5.4 60 38-107 67-126 (347)
116 4ecn_A Leucine-rich repeat pro 97.8 3.7E-05 1.3E-09 62.8 6.8 65 38-108 698-770 (876)
117 1o6v_A Internalin A; bacterial 97.8 2.9E-05 9.8E-10 58.2 5.4 60 38-107 69-128 (466)
118 4ecn_A Leucine-rich repeat pro 97.7 4.6E-05 1.6E-09 62.2 6.2 63 39-108 755-823 (876)
119 1m9s_A Internalin B; cell inva 97.7 4E-05 1.4E-09 60.1 5.4 39 66-106 152-190 (605)
120 3cvr_A Invasion plasmid antige 97.7 7.2E-05 2.5E-09 58.4 6.1 55 38-106 81-135 (571)
121 3cvr_A Invasion plasmid antige 97.7 7.2E-05 2.5E-09 58.4 5.9 14 92-105 181-194 (571)
122 1ds9_A Outer arm dynein; leuci 97.6 1.3E-06 4.6E-11 58.5 -3.5 37 67-105 93-129 (198)
123 3bz5_A Internalin-J, INLJ; leu 97.6 8.1E-05 2.8E-09 56.1 5.8 57 38-106 65-121 (457)
124 1m9s_A Internalin B; cell inva 97.6 6.1E-05 2.1E-09 59.0 5.3 59 38-106 88-146 (605)
125 3bz5_A Internalin-J, INLJ; leu 97.6 9.1E-05 3.1E-09 55.9 6.0 57 38-106 86-142 (457)
126 3rw6_A Nuclear RNA export fact 97.6 7.8E-05 2.7E-09 53.2 4.5 61 38-105 171-234 (267)
127 3g06_A SSPH2 (leucine-rich rep 97.6 0.00013 4.5E-09 57.4 6.1 55 38-106 62-116 (622)
128 3g06_A SSPH2 (leucine-rich rep 97.5 0.00011 3.9E-09 57.7 5.6 38 67-105 261-298 (622)
129 1o6v_A Internalin A; bacterial 97.5 0.00012 4.2E-09 54.8 5.3 14 90-103 308-321 (466)
130 3goz_A Leucine-rich repeat-con 97.4 4E-05 1.4E-09 55.7 1.7 62 39-106 53-124 (362)
131 1jl5_A Outer protein YOPM; leu 97.4 0.0003 1E-08 53.0 6.5 29 49-81 139-167 (454)
132 1ds9_A Outer arm dynein; leuci 97.3 3.4E-06 1.1E-10 56.6 -4.7 39 66-104 114-153 (198)
133 1jl5_A Outer protein YOPM; leu 97.3 0.00047 1.6E-08 51.9 6.3 58 38-107 216-273 (454)
134 3goz_A Leucine-rich repeat-con 97.1 9.3E-05 3.2E-09 53.7 0.5 63 38-104 81-151 (362)
135 4fdw_A Leucine rich hypothetic 97.0 0.0013 4.3E-08 49.0 5.5 52 53-108 146-197 (401)
136 4fdw_A Leucine rich hypothetic 96.9 0.00088 3E-08 49.9 4.3 52 52-107 310-361 (401)
137 3rw6_A Nuclear RNA export fact 96.9 0.00054 1.9E-08 48.8 2.8 42 65-106 168-211 (267)
138 2ast_B S-phase kinase-associat 96.8 0.00078 2.7E-08 47.8 3.4 36 66-101 117-152 (336)
139 2ast_B S-phase kinase-associat 96.8 0.00032 1.1E-08 49.8 1.0 60 38-104 71-131 (336)
140 4h09_A Hypothetical leucine ri 96.7 0.0017 5.9E-08 47.1 4.6 56 38-100 287-342 (379)
141 3rfe_A Platelet glycoprotein I 96.5 0.0023 8E-08 40.5 3.3 37 38-80 32-68 (130)
142 2ca6_A RAN GTPase-activating p 96.4 0.001 3.5E-08 48.4 1.5 39 66-104 215-257 (386)
143 4h09_A Hypothetical leucine ri 96.3 0.0082 2.8E-07 43.5 6.1 62 38-107 264-325 (379)
144 4fs7_A Uncharacterized protein 96.3 0.0054 1.8E-07 44.9 5.1 61 38-107 298-358 (394)
145 2ca6_A RAN GTPase-activating p 96.3 0.00072 2.5E-08 49.2 0.2 40 66-105 243-288 (386)
146 4gt6_A Cell surface protein; l 95.9 0.011 3.8E-07 43.2 4.9 56 38-101 312-367 (394)
147 4fs7_A Uncharacterized protein 95.7 0.0055 1.9E-07 44.8 2.8 56 38-101 321-376 (394)
148 4gt6_A Cell surface protein; l 95.6 0.014 4.9E-07 42.6 4.7 53 51-107 297-349 (394)
149 1z7x_W Ribonuclease inhibitor; 95.6 0.0017 6E-08 47.8 -0.2 61 38-104 29-98 (461)
150 3un9_A NLR family member X1; l 95.6 0.0019 6.5E-08 47.6 -0.2 13 91-103 239-251 (372)
151 1z7x_W Ribonuclease inhibitor; 95.6 0.0026 8.9E-08 46.9 0.5 35 69-103 87-125 (461)
152 3un9_A NLR family member X1; l 95.1 0.0057 1.9E-07 45.0 0.9 15 67-81 155-169 (372)
153 2lz0_A Uncharacterized protein 94.5 0.088 3E-06 31.8 5.2 51 49-102 4-54 (100)
154 3ogk_B Coronatine-insensitive 93.9 0.009 3.1E-07 45.4 -0.3 62 38-105 464-527 (592)
155 3ogk_B Coronatine-insensitive 92.1 0.022 7.4E-07 43.3 -0.6 63 38-106 165-235 (592)
156 1io0_A Tropomodulin; LRR prote 91.2 0.039 1.3E-06 36.4 0.0 15 67-81 93-107 (185)
157 2p1m_B Transport inhibitor res 90.9 0.025 8.4E-07 42.9 -1.4 60 38-103 457-518 (594)
158 1io0_A Tropomodulin; LRR prote 89.5 0.049 1.7E-06 35.9 -0.7 61 38-104 94-164 (185)
159 3e4g_A ATP synthase subunit S, 87.4 0.29 9.8E-06 32.6 2.0 58 38-101 62-124 (176)
160 3e4g_A ATP synthase subunit S, 86.6 0.88 3E-05 30.2 4.1 38 67-104 61-99 (176)
161 2p1m_B Transport inhibitor res 84.3 0.54 1.8E-05 35.5 2.4 59 38-101 157-221 (594)
162 2ra8_A Uncharacterized protein 78.3 0.91 3.1E-05 33.2 1.8 40 66-105 251-293 (362)
163 2ljs_A Trypsin inhibitor 3; be 70.5 0.8 2.7E-05 21.3 -0.2 24 6-29 3-26 (30)
164 2ra8_A Uncharacterized protein 70.3 1.7 5.8E-05 31.7 1.5 38 67-104 279-320 (362)
165 1pgv_A TMD-1, tropomodulin TMD 66.9 2.5 8.7E-05 28.4 1.7 14 67-80 70-83 (197)
166 1h9h_I EETI-II, trypsin inhibi 37.1 6 0.0002 19.2 -0.3 24 7-30 2-25 (36)
167 1lu0_A CMTI-I, trypsin inhibit 24.7 15 0.00051 17.0 -0.1 23 7-29 3-25 (29)
No 1
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=3.1e-14 Score=94.91 Aligned_cols=85 Identities=26% Similarity=0.364 Sum_probs=74.0
Q ss_pred CCCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCccccc
Q psy17697 19 LTVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS 88 (110)
Q Consensus 19 ~cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~ 88 (110)
.||..|.|.+..+.+... + .++.|++ ++|.++.+++..|. ++++|+.|++++|+++.+++..|.
T Consensus 2 ~CP~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L----~~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 2 ACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYL----YDNQITKLEPGVFD--RLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp CCC-CCEEETTEEECTTSCCSSCCSCCCTTCSEEEC----CSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTT
T ss_pred cCcCcCCcCCCEEEeCCCCcCccCccCCCCCcEEEc----CCCcCCccChhhhc--CcccCCEEECCCCCcCccChhhcc
Confidence 699999999876666444 1 7889999 99999999999998 789999999999999999999899
Q ss_pred CCcCCcEEeCCCCCCccccCC
Q psy17697 89 GLGILIELDLTKNRIHTLHPG 109 (110)
Q Consensus 89 ~l~~L~~l~Ls~N~l~~l~~~ 109 (110)
.+++|+.|+|++|+|+.++++
T Consensus 76 ~l~~L~~L~L~~N~l~~~~~~ 96 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIPRG 96 (170)
T ss_dssp TCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCCEEECCCCccCEeCHH
Confidence 999999999999999988764
No 2
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=1.5e-13 Score=92.11 Aligned_cols=88 Identities=27% Similarity=0.377 Sum_probs=75.2
Q ss_pred ccCCCCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcc
Q psy17697 16 QLGLTVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPD 85 (110)
Q Consensus 16 ~~~~cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~ 85 (110)
.+..||..|.|....+.+... + .++.|++ ++|.+..+++..|. ++++|+.|++++|+++.+++.
T Consensus 2 ~~~~CP~~C~C~~~~l~~~~n~l~~iP~~~~~~L~~L~L----s~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~~ 75 (174)
T 2r9u_A 2 HSAGCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWL----NNNQITKLEPGVFD--HLVNLQQLYFNSNKLTAIPTG 75 (174)
T ss_dssp CCCSSCTTSEECSSEEECCSSCCSSCCSCCCTTCSEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCCCCCEECCcEEEeCCCCCCccCCCcCCCCcEEEe----CCCCccccCHHHhc--CCcCCCEEECCCCCCCccChh
Confidence 467899999997655555433 1 7889999 99999999999998 789999999999999999998
Q ss_pred cccCCcCCcEEeCCCCCCccccCC
Q psy17697 86 AFSGLGILIELDLTKNRIHTLHPG 109 (110)
Q Consensus 86 ~f~~l~~L~~l~Ls~N~l~~l~~~ 109 (110)
.|..+++|+.|+|++|+|+.++++
T Consensus 76 ~~~~l~~L~~L~L~~N~l~~l~~~ 99 (174)
T 2r9u_A 76 VFDKLTQLTQLDLNDNHLKSIPRG 99 (174)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTT
T ss_pred HhCCcchhhEEECCCCccceeCHH
Confidence 888999999999999999988764
No 3
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=3.6e-13 Score=92.94 Aligned_cols=86 Identities=28% Similarity=0.356 Sum_probs=65.8
Q ss_pred cCCCCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCccc
Q psy17697 17 LGLTVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDA 86 (110)
Q Consensus 17 ~~~cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~ 86 (110)
...||..|.|.+..+.|... + .++.|++ ++|.+..+++..|. ++++|+.|++++|.++.+.+..
T Consensus 2 ~~~CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l----~~n~i~~i~~~~~~--~l~~L~~L~Ls~N~i~~~~~~~ 75 (220)
T 2v9t_B 2 SLHCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRL----EQNTIKVIPPGAFS--PYKKLRRIDLSNNQISELAPDA 75 (220)
T ss_dssp CCCSCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEEC----CSSCCCEECTTSST--TCTTCCEEECCSSCCCEECTTT
T ss_pred CCCCCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEEC----CCCcCCCcCHhHhh--CCCCCCEEECCCCcCCCcCHHH
Confidence 45799999999876666443 1 6777888 88888888877777 6777888888888887777777
Q ss_pred ccCCcCCcEEeCCCCCCccccC
Q psy17697 87 FSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 87 f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
|.++++|+.|+|++|.|+.+|+
T Consensus 76 ~~~l~~L~~L~Ls~N~l~~l~~ 97 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNKITELPK 97 (220)
T ss_dssp TTTCSSCCEEECCSSCCCCCCT
T ss_pred hhCCcCCCEEECCCCcCCccCH
Confidence 7777777777777777777665
No 4
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.38 E-value=5.6e-13 Score=96.69 Aligned_cols=84 Identities=24% Similarity=0.312 Sum_probs=76.6
Q ss_pred CCCCC-cccccCceeEEE--------E----eeeEEEEeeCCCC-ccCCCCCcCccCccCcccccEEeccCCCCcccCcc
Q psy17697 20 TVESC-FNTWLSVGKHHA--------L----AARVLKLKIGEKS-NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPD 85 (110)
Q Consensus 20 cp~~c-~c~~~~~~~~~~--------l----~l~~l~l~~~~~~-n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~ 85 (110)
||..| .|.+..+.|... + .++.|++ ++ |.|..+++..|. ++++|+.|+|++|+|+.+++.
T Consensus 1 cp~~c~~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l----~~~n~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~ 74 (347)
T 2ifg_A 1 CPDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYI----ENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAPD 74 (347)
T ss_dssp CCSSSCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEEC----CSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECTT
T ss_pred CCCcCccccCCEEEcCCCCCCCccCCCCCCCCeeEEEc----cCCCCCCCcChhHhc--cccCCCEEECCCCccceeCHH
Confidence 89999 999887777654 2 6899999 96 999999999998 899999999999999999999
Q ss_pred cccCCcCCcEEeCCCCCCccccCC
Q psy17697 86 AFSGLGILIELDLTKNRIHTLHPG 109 (110)
Q Consensus 86 ~f~~l~~L~~l~Ls~N~l~~l~~~ 109 (110)
+|..+++|+.|+|++|+|+.+|++
T Consensus 75 ~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 75 AFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp GGGSCSCCCEEECCSSCCSCCCST
T ss_pred HhcCCcCCCEEeCCCCccceeCHH
Confidence 999999999999999999999864
No 5
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.37 E-value=8.4e-13 Score=87.76 Aligned_cols=83 Identities=27% Similarity=0.369 Sum_probs=61.6
Q ss_pred CCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccC
Q psy17697 20 TVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSG 89 (110)
Q Consensus 20 cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~ 89 (110)
||..|.|.|..+.+... + .++.|++ ++|.+..++...|. .+++|+.+++++|.++.+++..|..
T Consensus 1 Cp~~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l----~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (177)
T 2o6r_A 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLEL----ESNKLQSLPHGVFD--KLTQLTKLSLSQNQIQSLPDGVFDK 74 (177)
T ss_dssp CCTTCEEETTEEECCSSCCSSCCTTCCTTCSEEEC----CSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CcCCCEeCCCEEEecCCCCccCCCCCCCCCcEEEe----CCCcccEeCHHHhc--CcccccEEECCCCcceEeChhHccC
Confidence 89999999987777544 1 6677777 77777777777776 5677777777777777777766677
Q ss_pred CcCCcEEeCCCCCCccccC
Q psy17697 90 LGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 90 l~~L~~l~Ls~N~l~~l~~ 108 (110)
+++|+.|++++|.++.+++
T Consensus 75 l~~L~~L~l~~N~l~~~~~ 93 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSLPN 93 (177)
T ss_dssp CTTCCEEECCSSCCCCCCT
T ss_pred CCccCEEECCCCCccccCH
Confidence 7777777777777776654
No 6
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=1.1e-12 Score=89.06 Aligned_cols=85 Identities=25% Similarity=0.316 Sum_probs=48.9
Q ss_pred CCCCCCCcccccCceeEEE-E--------------------------------eeeEEEEeeCCCCccCCCCCcCccCcc
Q psy17697 18 GLTVESCFNTWLSVGKHHA-L--------------------------------AARVLKLKIGEKSNNIPHLPADAFRST 64 (110)
Q Consensus 18 ~~cp~~c~c~~~~~~~~~~-l--------------------------------~l~~l~l~~~~~~n~l~~~~~~~f~~~ 64 (110)
..||..|.|.+..+.|... + .++.|++ ++|.++.+++..|.
T Consensus 2 ~~CP~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~L----s~N~i~~i~~~~f~-- 75 (193)
T 2wfh_A 2 SRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDL----SNNRISTLSNQSFS-- 75 (193)
T ss_dssp --CCTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEEC----CSSCCCCCCTTTTT--
T ss_pred CCCCCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEEC----CCCcCCEeCHhHcc--
Confidence 4699999998765444332 1 3444555 55555555555555
Q ss_pred CcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 65 ~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
++++|+.|++++|.++.+++.+|.++++|+.|+|++|.|+.+++
T Consensus 76 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~ 119 (193)
T 2wfh_A 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE 119 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence 45555666666666666555555556666666666666655554
No 7
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.34 E-value=1.8e-12 Score=88.09 Aligned_cols=83 Identities=23% Similarity=0.342 Sum_probs=62.4
Q ss_pred CCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccC
Q psy17697 20 TVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSG 89 (110)
Q Consensus 20 cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~ 89 (110)
||..|.|.|..+.|... + .++.|++ ++|.+..++...|. ++++|+.+++++|.++.+++..|..
T Consensus 1 Cp~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l----~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (208)
T 2o6s_A 1 CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDL----ETNSLKSLPNGVFD--ELTSLTQLYLGGNKLQSLPNGVFNK 74 (208)
T ss_dssp CCTTCEEETTEEECCSSCCSSCCSCCCTTCSEEEC----CSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CcCCCEECCCEEEecCCCccCCCCCCCCCCcEEEc----CCCccCcCChhhhc--ccccCcEEECCCCccCccChhhcCC
Confidence 89999999988877654 1 5777777 77777777777776 5677777777777777777766677
Q ss_pred CcCCcEEeCCCCCCccccC
Q psy17697 90 LGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 90 l~~L~~l~Ls~N~l~~l~~ 108 (110)
+++|+.|++++|.++.+++
T Consensus 75 l~~L~~L~Ls~n~l~~~~~ 93 (208)
T 2o6s_A 75 LTSLTYLNLSTNQLQSLPN 93 (208)
T ss_dssp CTTCCEEECCSSCCCCCCT
T ss_pred CCCcCEEECCCCcCCccCH
Confidence 7777777777777776654
No 8
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=2.2e-12 Score=87.20 Aligned_cols=84 Identities=29% Similarity=0.394 Sum_probs=57.7
Q ss_pred CCCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcC-ccCccCcccccEEeccCCCCcccCcccc
Q psy17697 19 LTVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPAD-AFRSTGLVNLHNLLLKDCNITDIDPDAF 87 (110)
Q Consensus 19 ~cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~-~f~~~~~~~L~~l~l~~n~l~~i~~~~f 87 (110)
.||..|.|.|..+.+... + .++.|++ ++|.+..+++. .|. .+++|+.|++++|+++.+.+..|
T Consensus 1 ~CP~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l----~~n~i~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~ 74 (192)
T 1w8a_A 1 DCPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLL----NDNELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPNAF 74 (192)
T ss_dssp CCCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEEC----CSCCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTTTT
T ss_pred CcCCCCEECCCEEEcCCCCcCcCccCCCCCCCEEEC----CCCcCCccCCccccc--cCCCCCEEECCCCCCCCcCHhHc
Confidence 599999999876655433 1 6667777 77777776654 455 56677777777777777766666
Q ss_pred cCCcCCcEEeCCCCCCccccC
Q psy17697 88 SGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 88 ~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++++|+.|++++|.|+.+++
T Consensus 75 ~~l~~L~~L~Ls~N~l~~~~~ 95 (192)
T 1w8a_A 75 EGASHIQELQLGENKIKEISN 95 (192)
T ss_dssp TTCTTCCEEECCSCCCCEECS
T ss_pred CCcccCCEEECCCCcCCccCH
Confidence 666777777777776666554
No 9
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.27 E-value=6.8e-12 Score=86.52 Aligned_cols=18 Identities=17% Similarity=0.004 Sum_probs=13.0
Q ss_pred CCCCCCCcccccCceeEE
Q psy17697 18 GLTVESCFNTWLSVGKHH 35 (110)
Q Consensus 18 ~~cp~~c~c~~~~~~~~~ 35 (110)
..||..|.|.+..+.+..
T Consensus 3 ~~CP~~C~C~~~~l~~s~ 20 (220)
T 2v70_A 3 LACPEKCRCEGTTVDCSN 20 (220)
T ss_dssp -CCCTTCEEETTEEECCS
T ss_pred CCCCCCCEECCCEeEeCC
Confidence 579999999887655543
No 10
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.19 E-value=2.2e-11 Score=89.29 Aligned_cols=89 Identities=29% Similarity=0.369 Sum_probs=63.4
Q ss_pred cccCCCCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc
Q psy17697 15 DQLGLTVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP 84 (110)
Q Consensus 15 ~~~~~cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~ 84 (110)
.....||..|.|.+..+.|... + .++.|++ ++|.+..++...|.. ++++|+.|++++|+++.+++
T Consensus 7 ~~~~~Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~L----s~N~l~~l~~~~~~~-~l~~L~~L~L~~N~i~~i~~ 81 (361)
T 2xot_A 7 RSVVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDL----SHNNLSRLRAEWTPT-RLTNLHSLLLSHNHLNFISS 81 (361)
T ss_dssp CCCTTCCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEEC----CSSCCCEECTTSSSS-CCTTCCEEECCSSCCCEECT
T ss_pred CcCCCCCCCCEECCCEEEeCCCCcCccCccCCCCCCEEEC----CCCCCCccChhhhhh-cccccCEEECCCCcCCccCh
Confidence 4467799999998766666544 2 5677788 888888777776631 25677777777777777777
Q ss_pred ccccCCcCCcEEeCCCCCCccccC
Q psy17697 85 DAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 85 ~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.+|..+++|+.|+|++|.|+.+++
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~~~~ 105 (361)
T 2xot_A 82 EAFVPVPNLRYLDLSSNHLHTLDE 105 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECT
T ss_pred hhccCCCCCCEEECCCCcCCcCCH
Confidence 667777777777777777776654
No 11
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.15 E-value=3.5e-11 Score=92.00 Aligned_cols=65 Identities=32% Similarity=0.430 Sum_probs=56.7
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.+++|++ ++|.|+.+++..|. ++++|+.|++++|+|+.+++++|.++++|+.|+|++|+|+.+|+
T Consensus 53 ~~~~LdL----s~N~i~~l~~~~f~--~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 53 STKNLDL----SFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp TCCEEEC----TTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCCEEEe----eCCCCCCCCHHHHh--CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 7788899 99999999888888 78889999999998888888888888888888888888888765
No 12
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.13 E-value=1e-10 Score=87.77 Aligned_cols=86 Identities=31% Similarity=0.350 Sum_probs=59.2
Q ss_pred cCCCCCCCcccccC--ceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc
Q psy17697 17 LGLTVESCFNTWLS--VGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP 84 (110)
Q Consensus 17 ~~~cp~~c~c~~~~--~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~ 84 (110)
...||..|.|.+.. +.|... + .++.|++ ++|.+..+++..|. ++++|+.|++++|.++.+.+
T Consensus 43 ~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L----~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~ 116 (452)
T 3zyi_A 43 PQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNL----MENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEV 116 (452)
T ss_dssp -CCCCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEEC----CSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECT
T ss_pred cCCCCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEEC----cCCcCceECHHHcC--CCCCCCEEECCCCccCCcCh
Confidence 45799999997643 333222 1 5677777 77777777777776 66777777777777777776
Q ss_pred ccccCCcCCcEEeCCCCCCccccC
Q psy17697 85 DAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 85 ~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
..|.++++|+.|+|++|.++.+++
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~~~~ 140 (452)
T 3zyi_A 117 GAFNGLASLNTLELFDNWLTVIPS 140 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSBCCT
T ss_pred hhccCcccCCEEECCCCcCCccCh
Confidence 667777777777777777766654
No 13
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.11 E-value=8.1e-11 Score=81.33 Aligned_cols=85 Identities=15% Similarity=0.344 Sum_probs=63.8
Q ss_pred CCCCCCCcccc-cCceeEEE-E--------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCC-CcccCccc
Q psy17697 18 GLTVESCFNTW-LSVGKHHA-L--------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDA 86 (110)
Q Consensus 18 ~~cp~~c~c~~-~~~~~~~~-l--------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~-l~~i~~~~ 86 (110)
+.||..|.|.. ......+. + .++.+++ ++|.++.+++..|. ++++|+.+++++|. ++.+++.+
T Consensus 2 ~~cp~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l----~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~ 75 (239)
T 2xwt_C 2 GCSSPPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKL----IETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHS 75 (239)
T ss_dssp -CCSSSCSEEECSTTEEEECSCSSCCCCCTTCCEEEE----ESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTT
T ss_pred CCCCCCCeeCCCCcceeEccCccccCCCCCcccEEEE----eCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhH
Confidence 46999999987 55542221 1 5777888 88888888887777 67888888888885 88887777
Q ss_pred ccCCcCCcEEeCCC-CCCccccC
Q psy17697 87 FSGLGILIELDLTK-NRIHTLHP 108 (110)
Q Consensus 87 f~~l~~L~~l~Ls~-N~l~~l~~ 108 (110)
|.++++|+.|++++ |.++.+++
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEECT
T ss_pred cCCCcCCcEEECCCCCCeeEcCH
Confidence 88888888888887 78877764
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.10 E-value=2e-10 Score=85.89 Aligned_cols=86 Identities=29% Similarity=0.361 Sum_probs=60.1
Q ss_pred cCCCCCCCccccc--CceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc
Q psy17697 17 LGLTVESCFNTWL--SVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP 84 (110)
Q Consensus 17 ~~~cp~~c~c~~~--~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~ 84 (110)
...||..|.|... .+.|... + .++.|++ ++|.+..++...|. ++++|+.|++++|.++.+.+
T Consensus 32 ~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L----~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~ 105 (440)
T 3zyj_A 32 AQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNL----HENQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEI 105 (440)
T ss_dssp -CCCCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEEC----CSCCCCEECTTTTS--SCSSCCEEECCSSCCCEECG
T ss_pred cccCCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEc----cCCcCCeeCHHHhh--CCCCCCEEECCCCcCCccCh
Confidence 5679999999753 3333332 1 5677777 77777777777776 67777777777777777777
Q ss_pred ccccCCcCCcEEeCCCCCCccccC
Q psy17697 85 DAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 85 ~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.+|.++++|+.|+|++|.++.+++
T Consensus 106 ~~~~~l~~L~~L~L~~n~l~~~~~ 129 (440)
T 3zyj_A 106 GAFNGLANLNTLELFDNRLTTIPN 129 (440)
T ss_dssp GGGTTCSSCCEEECCSSCCSSCCT
T ss_pred hhccCCccCCEEECCCCcCCeeCH
Confidence 777777777777777777776654
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.07 E-value=2.5e-10 Score=85.75 Aligned_cols=84 Identities=27% Similarity=0.363 Sum_probs=66.0
Q ss_pred CCCCCCccccc--CceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCccc
Q psy17697 19 LTVESCFNTWL--SVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDA 86 (110)
Q Consensus 19 ~cp~~c~c~~~--~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~ 86 (110)
.||..|.|... .+.|... + .++.|++ ++|.+..+++..|. .+++|+.|++++|.++.+.+.+
T Consensus 2 ~Cp~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L----~~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~ 75 (477)
T 2id5_A 2 GCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDL----GKNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPGA 75 (477)
T ss_dssp CCSTTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEEC----CSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTT
T ss_pred cccCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEEC----CCCccceECHhHcc--CCCCCCEEECCCCccCEeChhh
Confidence 69999999753 3444333 2 7778888 88888888888887 6788888888888888888877
Q ss_pred ccCCcCCcEEeCCCCCCccccC
Q psy17697 87 FSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 87 f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
|..+++|+.|+|++|.++.+++
T Consensus 76 ~~~l~~L~~L~L~~n~l~~~~~ 97 (477)
T 2id5_A 76 FNNLFNLRTLGLRSNRLKLIPL 97 (477)
T ss_dssp TTTCTTCCEEECCSSCCCSCCT
T ss_pred hhCCccCCEEECCCCcCCccCc
Confidence 8888888888888888877765
No 16
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.06 E-value=2.4e-10 Score=79.03 Aligned_cols=83 Identities=27% Similarity=0.376 Sum_probs=50.2
Q ss_pred CCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccC
Q psy17697 20 TVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSG 89 (110)
Q Consensus 20 cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~ 89 (110)
....|.|.|..+.|... + .++.|++ ++|.+..+++..|. ++++|+.|++++|+++.+++..|..
T Consensus 13 ~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~L----s~n~i~~~~~~~~~--~l~~L~~L~L~~N~l~~i~~~~~~~ 86 (229)
T 3e6j_A 13 CPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYL----HDNQITKLEPGVFD--SLINLKELYLGSNQLGALPVGVFDS 86 (229)
T ss_dssp CCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEc----CCCccCccCHHHhh--CccCCcEEECCCCCCCCcChhhccc
Confidence 34567788877766543 1 5566666 66666666655555 4556666666666666665555555
Q ss_pred CcCCcEEeCCCCCCccccC
Q psy17697 90 LGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 90 l~~L~~l~Ls~N~l~~l~~ 108 (110)
+++|+.|+|++|.|+.+++
T Consensus 87 l~~L~~L~Ls~N~l~~l~~ 105 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLTVLPS 105 (229)
T ss_dssp CTTCCEEECCSSCCCCCCT
T ss_pred CCCcCEEECCCCcCCccCh
Confidence 6666666666666555543
No 17
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.05 E-value=1.3e-10 Score=84.74 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=65.7
Q ss_pred CCCC-CcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCC-cccCcccc
Q psy17697 20 TVES-CFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNI-TDIDPDAF 87 (110)
Q Consensus 20 cp~~-c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l-~~i~~~~f 87 (110)
||.+ |.|.+..+.|... + ++++|++ ++|.|+.+|+++|. ++++|+.|++++|.+ +.+++.+|
T Consensus 2 Cp~~~C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~L----s~N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~f 75 (350)
T 4ay9_X 2 CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRF----VLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADVF 75 (350)
T ss_dssp CCCSSSEEETTEEEEESTTCCSCCTTCCTTCSEEEE----ESCCCSEECTTSST--TCTTCCEEEEECCTTCCEECTTSB
T ss_pred CCCCccEeeCCEEEecCCCCCccCcCcCCCCCEEEc----cCCcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChhHh
Confidence 8865 9999888877654 2 7889999 99999999999998 789999999999986 44666777
Q ss_pred cCCcCCcE-EeCCCCCCccccC
Q psy17697 88 SGLGILIE-LDLTKNRIHTLHP 108 (110)
Q Consensus 88 ~~l~~L~~-l~Ls~N~l~~l~~ 108 (110)
.+++++.. +.+..|+++.+++
T Consensus 76 ~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 76 SNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp CSCTTCCEEEEEEETTCCEECT
T ss_pred hcchhhhhhhcccCCcccccCc
Confidence 77777654 5556677777654
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.03 E-value=3.4e-10 Score=81.47 Aligned_cols=88 Identities=30% Similarity=0.385 Sum_probs=75.6
Q ss_pred cccCCCCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc
Q psy17697 15 DQLGLTVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP 84 (110)
Q Consensus 15 ~~~~~cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~ 84 (110)
+....||..|.|.+....+... + .++.+++ ++|.+..+++..|. .+++|+.+++++|.++.+.+
T Consensus 20 ~~~~~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L----~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~ 93 (330)
T 1xku_A 20 PMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDL----QNNKITEIKDGDFK--NLKNLHTLILINNKISKISP 93 (330)
T ss_dssp --CCCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEEC----CSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCT
T ss_pred cccCCCCCCCcCCCeEEEecCCCccccCccCCCCCeEEEC----CCCcCCEeChhhhc--cCCCCCEEECCCCcCCeeCH
Confidence 3456699999998876665433 1 7889999 99999999998898 78999999999999999999
Q ss_pred ccccCCcCCcEEeCCCCCCccccC
Q psy17697 85 DAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 85 ~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
..|..+++|+.|++++|.++.+|.
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~l~~ 117 (330)
T 1xku_A 94 GAFAPLVKLERLYLSKNQLKELPE 117 (330)
T ss_dssp TTTTTCTTCCEEECCSSCCSBCCS
T ss_pred HHhcCCCCCCEEECCCCcCCccCh
Confidence 889999999999999999998875
No 19
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.03 E-value=1.2e-10 Score=82.92 Aligned_cols=82 Identities=26% Similarity=0.290 Sum_probs=66.7
Q ss_pred CCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccC--cccc
Q psy17697 20 TVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDID--PDAF 87 (110)
Q Consensus 20 cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~--~~~f 87 (110)
||..|.|.|..+.|... + .++.|++ ++|.+..+|...|. .+++|+.+++++|.++.+. +..+
T Consensus 1 CP~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L----~~n~l~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~ 74 (306)
T 2z66_A 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLEL----ESNKLQSLPHGVFD--KLTQLTKLSLSSNGLSFKGCCSQSD 74 (306)
T ss_dssp CCTTCEEETTEEECCSSCCSSCCSCCCTTCCEEEC----CSSCCCCCCTTTTT--TCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred CcCCCeeCCCEEEcCCCCcccCCCCCCCCCCEEEC----CCCccCccCHhHhh--ccccCCEEECCCCccCcccCccccc
Confidence 89999999987777654 2 7889999 99999999999998 7899999999999988664 3445
Q ss_pred cCCcCCcEEeCCCCCCcccc
Q psy17697 88 SGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 88 ~~l~~L~~l~Ls~N~l~~l~ 107 (110)
..+++|+.|++++|.++.++
T Consensus 75 ~~~~~L~~L~Ls~n~i~~l~ 94 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVITMS 94 (306)
T ss_dssp HSCSCCCEEECCSCSEEEEE
T ss_pred ccccccCEEECCCCccccCh
Confidence 56777777777777776654
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.03 E-value=3.6e-10 Score=79.78 Aligned_cols=84 Identities=32% Similarity=0.492 Sum_probs=62.7
Q ss_pred CCCCCCcccccC---ceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcc
Q psy17697 19 LTVESCFNTWLS---VGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPD 85 (110)
Q Consensus 19 ~cp~~c~c~~~~---~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~ 85 (110)
.||..|.|.... +.|... + .++.|++ ++|.+..+++..|. .+++|+.+++++|.++.+.+.
T Consensus 1 ~CP~~C~C~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~l----~~n~i~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~ 74 (285)
T 1ozn_A 1 PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFL----HGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAA 74 (285)
T ss_dssp CCCTTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEEC----TTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTT
T ss_pred CcCCCceECCCCCeEEEcCcCCcccCCcCCCCCceEEEe----eCCcCCccCHHHcc--cCCCCCEEECCCCccceeCHh
Confidence 499999997654 333222 1 6778888 88888888887777 678888888888888888777
Q ss_pred cccCCcCCcEEeCCCCC-CccccC
Q psy17697 86 AFSGLGILIELDLTKNR-IHTLHP 108 (110)
Q Consensus 86 ~f~~l~~L~~l~Ls~N~-l~~l~~ 108 (110)
.|..+++|+.|++++|. ++.+++
T Consensus 75 ~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 75 AFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp TTTTCTTCCEEECCSCTTCCCCCT
T ss_pred hcCCccCCCEEeCCCCCCccccCH
Confidence 77778888888888886 666643
No 21
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.01 E-value=4e-10 Score=81.27 Aligned_cols=86 Identities=30% Similarity=0.437 Sum_probs=75.1
Q ss_pred cCCCCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCccc
Q psy17697 17 LGLTVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDA 86 (110)
Q Consensus 17 ~~~cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~ 86 (110)
...||..|.|.+....+... + .++.|++ ++|.+..+++..|. ++++|+.+++++|.++.+.+..
T Consensus 24 ~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l----~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~ 97 (332)
T 2ft3_A 24 SAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDL----QNNDISELRKDDFK--GLQHLYALVLVNNKISKIHEKA 97 (332)
T ss_dssp -CCCCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEEC----CSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECGGG
T ss_pred cCCCCCCCcccCCEEECCCCCccccCCCCCCCCeEEEC----CCCcCCccCHhHhh--CCCCCcEEECCCCccCccCHhH
Confidence 55699999998876666443 1 7889999 99999999998888 7899999999999999999998
Q ss_pred ccCCcCCcEEeCCCCCCccccC
Q psy17697 87 FSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 87 f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
|..+++|+.|++++|.++.+|.
T Consensus 98 ~~~l~~L~~L~L~~n~l~~l~~ 119 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNHLVEIPP 119 (332)
T ss_dssp STTCTTCCEEECCSSCCCSCCS
T ss_pred hhCcCCCCEEECCCCcCCccCc
Confidence 9999999999999999998875
No 22
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.93 E-value=2.2e-09 Score=73.87 Aligned_cols=65 Identities=35% Similarity=0.474 Sum_probs=50.1
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+|+..|. ++++|+.|++++|.++.+.+..|..+++|+.|+|++|.++.+++
T Consensus 81 ~L~~L~L----s~N~l~~l~~~~f~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 81 SLNSLVL----YGNKITELPKSLFE--GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp SCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCCEEEC----CCCcCCccCHhHcc--CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 6677777 77777777777777 67778888888888877777777777788888888888777665
No 23
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.91 E-value=1.5e-09 Score=75.67 Aligned_cols=64 Identities=28% Similarity=0.413 Sum_probs=34.1
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.|++ ++|.+..+++..|. ++++|+.|++++|.++.+.+..|..+++|+.|++++|.++.++
T Consensus 36 ~l~~L~L----~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 99 (251)
T 3m19_A 36 DTEKLDL----QSTGLATLSDATFR--GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99 (251)
T ss_dssp TCCEEEC----TTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred CCCEEEc----cCCCcCccCHhHhc--CcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC
Confidence 4555555 55555555555555 4555555555555555555554555555555555555554444
No 24
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.88 E-value=3.3e-09 Score=71.46 Aligned_cols=65 Identities=31% Similarity=0.484 Sum_probs=57.3
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.++.+++..|. ++++|+.|++++|.++.+++..|.++++|+.|++++|+++.+++
T Consensus 55 ~L~~L~L----s~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 119 (192)
T 1w8a_A 55 HLVKLEL----KRNQLTGIEPNAFE--GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119 (192)
T ss_dssp TCCEEEC----CSSCCCCBCTTTTT--TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred CCCEEEC----CCCCCCCcCHhHcC--CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH
Confidence 6788999 99999998888888 78899999999999999988888889999999999999887754
No 25
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.88 E-value=4e-09 Score=72.83 Aligned_cols=65 Identities=29% Similarity=0.326 Sum_probs=49.8
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..++...|. ++++|+.|++++|.++.+++..|..+++|+.|++++|.|+.+|.
T Consensus 65 ~L~~L~L----~~N~l~~i~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~ 129 (229)
T 3e6j_A 65 NLKELYL----GSNQLGALPVGVFD--SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR 129 (229)
T ss_dssp TCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred CCcEEEC----CCCCCCCcChhhcc--cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCc
Confidence 6777778 88888878777777 67778888888888887777777777777777777777777654
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.87 E-value=3.2e-09 Score=77.09 Aligned_cols=84 Identities=30% Similarity=0.372 Sum_probs=54.5
Q ss_pred cCCCCCCCcccccCceeEEE---E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc
Q psy17697 17 LGLTVESCFNTWLSVGKHHA---L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP 84 (110)
Q Consensus 17 ~~~cp~~c~c~~~~~~~~~~---l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~ 84 (110)
...|+..|.|.|... |.+. + .++.|++ ++|.+..++...|. ++++|+.+++++|.++.+.+
T Consensus 21 ~~~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l----~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~ 93 (353)
T 2z80_A 21 ESSNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDL----SNNRITYISNSDLQ--RCVNLQALVLTSNGINTIEE 93 (353)
T ss_dssp ------CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEEC----TTSCCCEECTTTTT--TCTTCCEEECTTSCCCEECT
T ss_pred cCCCccCCCCCCCeE-eeCCCCCcccccccccccCcEEEC----CCCcCcccCHHHhc--cCCCCCEEECCCCccCccCH
Confidence 344777777777654 3332 1 6777777 77777777777776 56777777777777777777
Q ss_pred ccccCCcCCcEEeCCCCCCcccc
Q psy17697 85 DAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 85 ~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
..|..+++|+.|++++|.++.++
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSSCC
T ss_pred hhcCCCCCCCEEECCCCcCCcCC
Confidence 66777777777777777776654
No 27
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.86 E-value=4.8e-09 Score=72.13 Aligned_cols=65 Identities=32% Similarity=0.517 Sum_probs=40.6
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+++..|. ++++|+.|++++|.++.+.+..|..+++|+.|+|++|.++.+++
T Consensus 82 ~L~~L~L----s~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 82 GVNEILL----TSNRLENVQHKMFK--GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp TCCEEEC----CSSCCCCCCGGGGT--TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred CCCEEEC----CCCccCccCHhHhc--CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 4555666 66666666666665 55666666666666666666666666666666666666666543
No 28
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.85 E-value=4.9e-09 Score=69.50 Aligned_cols=62 Identities=31% Similarity=0.400 Sum_probs=58.6
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 105 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~ 105 (110)
.++.|++ ++|.|..+++..|. ++++|+.|++++|.++.+++..|..+++|+.|+|++|.++-
T Consensus 55 ~L~~L~L----s~N~l~~l~~~~f~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 55 QLTRLDL----DNNQLTVLPAGVFD--KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TCSEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred cCCEEEC----CCCCcCccChhhcc--CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 7899999 99999999999998 79999999999999999999989999999999999998763
No 29
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.85 E-value=1.4e-08 Score=71.33 Aligned_cols=65 Identities=31% Similarity=0.459 Sum_probs=43.3
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+++..|. ++++|+.|++++|.++.+++..|..+++|+.|++++|.++.+++
T Consensus 38 ~l~~L~l----~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~ 102 (270)
T 2o6q_A 38 DTKKLDL----QSNKLSSLPSKAFH--RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI 102 (270)
T ss_dssp TCSEEEC----CSSCCSCCCTTSSS--SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT
T ss_pred CCCEEEC----cCCCCCeeCHHHhc--CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH
Confidence 4666777 77777777766666 56667777777666666666666666666666666666665553
No 30
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.85 E-value=6.6e-09 Score=68.70 Aligned_cols=65 Identities=28% Similarity=0.421 Sum_probs=52.8
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+++..|. ++++|+.+++++|.++.+++..|..+++|+.+++++|.++.+++
T Consensus 53 ~L~~L~l----~~n~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 117 (177)
T 2o6r_A 53 QLTKLSL----SQNQIQSLPDGVFD--KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD 117 (177)
T ss_dssp TCSEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccEEEC----CCCcceEeChhHcc--CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCH
Confidence 6778888 88888888888777 67888888888888888887777788888888888888887765
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.85 E-value=2.6e-09 Score=79.42 Aligned_cols=85 Identities=24% Similarity=0.251 Sum_probs=59.3
Q ss_pred CCCCCCCcccccCceeEEE-E--------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCc-ccCcccc
Q psy17697 18 GLTVESCFNTWLSVGKHHA-L--------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNIT-DIDPDAF 87 (110)
Q Consensus 18 ~~cp~~c~c~~~~~~~~~~-l--------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~-~i~~~~f 87 (110)
..||..|.|....+.|... + .++.|++ ++|.+..+++..|. ++++|+.|++++|.+. .+++..|
T Consensus 2 ~p~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~L----s~n~i~~~~~~~~~--~l~~L~~L~L~~n~~~~~i~~~~~ 75 (455)
T 3v47_A 2 DPGTSECSVIGYNAICINRGLHQVPELPAHVNYVDL----SLNSIAELNETSFS--RLQDLQFLKVEQQTPGLVIRNNTF 75 (455)
T ss_dssp -----CCEEETTEEECCSSCCSSCCCCCTTCCEEEC----CSSCCCEECTTTTS--SCTTCCEEECCCCSTTCEECTTTT
T ss_pred CCccceeEEEccccCcCCCCcccCCCCCCccCEEEe----cCCccCcCChhHhc--cCccccEEECcCCcccceECcccc
Confidence 4588888887766666544 2 6778888 88888888777777 6778888888888775 5666777
Q ss_pred cCCcCCcEEeCCCCCCccccC
Q psy17697 88 SGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 88 ~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++++|+.|++++|.++.+++
T Consensus 76 ~~l~~L~~L~Ls~n~l~~~~~ 96 (455)
T 3v47_A 76 RGLSSLIILKLDYNQFLQLET 96 (455)
T ss_dssp TTCTTCCEEECTTCTTCEECT
T ss_pred cccccCCEEeCCCCccCccCh
Confidence 777788888888887776643
No 32
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.84 E-value=3.8e-09 Score=80.74 Aligned_cols=65 Identities=28% Similarity=0.415 Sum_probs=60.1
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.|+.+++++|. ++++|+.|++++|+++.++++.|.++++|+.|++++|.++.+++
T Consensus 77 ~L~~L~L----s~N~i~~i~~~~f~--~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~ 141 (635)
T 4g8a_A 77 ELQVLDL----SRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 141 (635)
T ss_dssp TCCEEEC----TTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTT
T ss_pred CCCEEEC----CCCcCCCcChhHhc--CCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCCh
Confidence 7889999 99999999999998 78999999999999999999999999999999999999988875
No 33
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.81 E-value=8.2e-09 Score=68.78 Aligned_cols=64 Identities=27% Similarity=0.354 Sum_probs=59.6
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.|++ ++|.|+.+|...|. ++++|+.|++++|+++.+++..|..+++|+.+++++|.++..+
T Consensus 58 ~L~~L~L----s~N~l~~i~~~~~~--~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 58 NLQQLYF----NSNKLTAIPTGVFD--KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp TCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CCCEEEC----CCCCCCccChhHhC--CcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 7899999 99999999999998 7899999999999999999988999999999999999987543
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.80 E-value=6.9e-09 Score=79.78 Aligned_cols=84 Identities=25% Similarity=0.327 Sum_probs=61.6
Q ss_pred CCCCCCcccccCceeEEE---E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCccc
Q psy17697 19 LTVESCFNTWLSVGKHHA---L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDA 86 (110)
Q Consensus 19 ~cp~~c~c~~~~~~~~~~---l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~ 86 (110)
.|+..|.|........+. + .++.+++ ++|.++.+++..|. ++++|+.|++++|.++.+.+.+
T Consensus 3 ~~~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~L----s~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~ 76 (606)
T 3t6q_A 3 SSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEF----SFNVLPTIQNTTFS--RLINLTFLDLTRCQIYWIHEDT 76 (606)
T ss_dssp ---CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEEC----TTCCCSEECTTTST--TCTTCSEEECTTCCCCEECTTT
T ss_pred cccCceecccCCceEECCCCCcccCcCCCCCcCcEEEc----cCCccCcCChhHhc--cCccceEEECCCCccceeChhh
Confidence 578888886433322222 1 6788888 88888888888887 6888888888888888888888
Q ss_pred ccCCcCCcEEeCCCCCCccccC
Q psy17697 87 FSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 87 f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
|.++++|+.|++++|.++.+++
T Consensus 77 ~~~l~~L~~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 77 FQSQHRLDTLVLTANPLIFMAE 98 (606)
T ss_dssp TTTCTTCCEEECTTCCCSEECT
T ss_pred ccCccccCeeeCCCCcccccCh
Confidence 8888888888888888877654
No 35
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.80 E-value=1.2e-08 Score=68.99 Aligned_cols=62 Identities=24% Similarity=0.398 Sum_probs=51.6
Q ss_pred EEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697 41 VLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109 (110)
Q Consensus 41 ~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~ 109 (110)
.|++ ++|.++.+| ..|. ++++|+.|++++|.++.+++..|.++++|+.|+|++|.|+.++++
T Consensus 35 ~L~L----~~n~i~~ip-~~~~--~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~ 96 (193)
T 2wfh_A 35 ELYL----DGNQFTLVP-KELS--NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR 96 (193)
T ss_dssp EEEC----CSSCCCSCC-GGGG--GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred EEEC----CCCcCchhH-HHhh--cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHH
Confidence 3556 777777776 4566 688899999999999999998899999999999999999988763
No 36
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.78 E-value=1.4e-08 Score=70.59 Aligned_cols=65 Identities=28% Similarity=0.417 Sum_probs=33.7
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+++..|. ++++|+.|++++|.++.+++..|..+++|+.|++++|.++.+++
T Consensus 108 ~L~~L~L----~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 108 QLDKLYL----GGNQLKSLPSGVFD--RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp TCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCCEEEc----CCCcCCCcChhHhc--cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 3444455 55555555554444 44555555555555555555445555555555555555555443
No 37
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.77 E-value=1.4e-08 Score=72.44 Aligned_cols=57 Identities=28% Similarity=0.391 Sum_probs=27.4
Q ss_pred CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
++|.+..+++..|. .+++|+.|++++|+++.+++..|..+++|+.|++++|+++.+|
T Consensus 132 ~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip 188 (290)
T 1p9a_G 132 KGNELKTLPPGLLT--PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188 (290)
T ss_dssp TTSCCCCCCTTTTT--TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCCCccChhhcc--cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC
Confidence 44444444444444 3444444444444444444444444445555555555544444
No 38
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.77 E-value=1.5e-08 Score=72.30 Aligned_cols=66 Identities=32% Similarity=0.487 Sum_probs=62.0
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~ 109 (110)
.++.|++ ++|.++.+++..|. ++++|+.|++++|+++.+++..|..+++|+.|++++|+++.+|++
T Consensus 101 ~L~~L~l----~~N~l~~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 166 (290)
T 1p9a_G 101 ALTVLDV----SFNRLTSLPLGALR--GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166 (290)
T ss_dssp TCCEEEC----CSSCCCCCCSSTTT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred CCCEEEC----CCCcCcccCHHHHc--CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHH
Confidence 7889999 99999999999998 799999999999999999999999999999999999999998863
No 39
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.76 E-value=1.7e-08 Score=68.13 Aligned_cols=65 Identities=25% Similarity=0.432 Sum_probs=35.6
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+++..|. ++++|+.+++++|.++.+++..|..+++|+.|++++|.++.+++
T Consensus 77 ~L~~L~L----s~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 77 SLTYLNL----STNQLQSLPNGVFD--KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp TCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCEEEC----CCCcCCccCHhHhc--CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence 4455555 55555555555554 45555555555555555555555555555555555555555443
No 40
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.74 E-value=3.3e-08 Score=63.52 Aligned_cols=66 Identities=20% Similarity=0.247 Sum_probs=55.9
Q ss_pred CCCCCCcccccCceeEEEEeeeEEEEeeCCCCccCC--CCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEE
Q psy17697 19 LTVESCFNTWLSVGKHHALAARVLKLKIGEKSNNIP--HLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIEL 96 (110)
Q Consensus 19 ~cp~~c~c~~~~~~~~~~l~l~~l~l~~~~~~n~l~--~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l 96 (110)
.||..|.|... .++- +++.++ .+|.... .+++.|+|++|+|+.++++.|..+++|+.+
T Consensus 1 ~CP~~C~C~~~-----------~v~C----s~~~L~~~~vP~~lp-----~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L 60 (130)
T 3rfe_A 1 PCPAPCSCAGT-----------LVDC----GRRGLTWASLPTAFP-----VDTTELVLTGNNLTALPPGLLDALPALRTA 60 (130)
T ss_dssp CCCTTCEEETT-----------EEEC----CSSCCCTTTSCSCCC-----TTCSEEECTTSCCSSCCTTTGGGCTTCCEE
T ss_pred CcCCCCEEcCC-----------EEEe----CCCCCccccCCCCCC-----cCCCEEECCCCcCCccChhhhhhccccCEE
Confidence 49999999643 5566 899998 8887643 468999999999999999999999999999
Q ss_pred eCCCCCCc
Q psy17697 97 DLTKNRIH 104 (110)
Q Consensus 97 ~Ls~N~l~ 104 (110)
+|++|.+.
T Consensus 61 ~L~~NP~~ 68 (130)
T 3rfe_A 61 HLGANPWR 68 (130)
T ss_dssp ECCSSCCB
T ss_pred EecCCCee
Confidence 99999764
No 41
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.70 E-value=2.6e-08 Score=69.85 Aligned_cols=64 Identities=33% Similarity=0.449 Sum_probs=37.4
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.|++ ++|.+..++...|. ++++|+.+++++|.++.+++..|..+++|+.|++++|.++.++
T Consensus 29 ~l~~L~l----s~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 29 STKNLDL----SFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp TCCEEEC----TTCCCCEECTTTTT--TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CccEEEC----CCCcccccCHhHhc--cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 3555666 66666665555555 4555666666666666655555555566666666666555544
No 42
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.69 E-value=1.6e-08 Score=73.94 Aligned_cols=64 Identities=33% Similarity=0.430 Sum_probs=36.5
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.|++ ++|.+..+++..|. ++++|+.|++++|.++.+.+..|..+++|+.|+|++|.|+.+|
T Consensus 89 ~L~~L~L----s~N~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 89 NLRYLDL----SSNHLHTLDEFLFS--DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp TCCEEEC----CSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CCCEEEC----CCCcCCcCCHHHhC--CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 4555555 55555555555555 4555555555555555555555555555555555555555544
No 43
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.67 E-value=4.7e-08 Score=68.62 Aligned_cols=65 Identities=26% Similarity=0.385 Sum_probs=37.6
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..++...|. .+++|+.+++++|.++.+++..|..+++|+.|++++|.++.+++
T Consensus 134 ~L~~L~L----s~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 134 KLTYLSL----GYNELQSLPKGVFD--KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp TCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCCEEEC----CCCcCCccCHhHcc--CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence 4455555 55555555555555 45556666666666666655555556666666666666655543
No 44
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.63 E-value=5e-08 Score=74.80 Aligned_cols=66 Identities=26% Similarity=0.259 Sum_probs=61.5
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~ 109 (110)
.++.|++ ++|.+..+++..|. ++++|+.|++++|.++.+.+.+|.++++|+.|++++|.++.+|..
T Consensus 53 ~L~~L~L----s~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 118 (562)
T 3a79_B 53 RTKALSL----SQNSISELRMPDIS--FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC 118 (562)
T ss_dssp TCCEEEC----CSSCCCCCCGGGTT--TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC
T ss_pred CcCEEEC----CCCCccccChhhhc--cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc
Confidence 7889999 99999999999998 799999999999999999999999999999999999999988753
No 45
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.61 E-value=4e-08 Score=74.57 Aligned_cols=63 Identities=38% Similarity=0.547 Sum_probs=32.1
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l 106 (110)
.++++++ ++|.+..+++..|. ++++|+.|++++|.++.+++.+|..+++|+.|++++|.++.+
T Consensus 27 ~L~~L~L----s~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 27 AMKSLDL----SFNKITYIGHGDLR--ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp TCCEEEC----CSSCCCEECSSTTS--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred CccEEEC----cCCccCccChhhhh--cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence 4455555 55555555444444 445555555555555555544455555555555555554443
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.61 E-value=5.7e-08 Score=74.65 Aligned_cols=64 Identities=30% Similarity=0.432 Sum_probs=39.2
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.+++ ++|.+..+++..|. ++++|+.+++++|.++.+.+.+|..+++|+.|++++|.++.++
T Consensus 33 ~l~~L~L----s~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~ 96 (606)
T 3vq2_A 33 STKNIDL----SFNPLKILKSYSFS--NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96 (606)
T ss_dssp TCCEEEC----TTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC
T ss_pred CcCEEEC----CCCCcCEeChhhcc--CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC
Confidence 4556666 66666666666665 5566666666666666666655666666666666666665553
No 47
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.60 E-value=1e-07 Score=67.02 Aligned_cols=64 Identities=31% Similarity=0.451 Sum_probs=32.1
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.|++ ++|.+..+++..|. ++++|+.|++++|.++.+++..|..+++|+.|++++|.++.++
T Consensus 110 ~L~~L~L----~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 110 NLKELVL----VENQLQSLPDGVFD--KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TCCEEEC----TTSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCEEEC----CCCcCCccCHHHhc--cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 3444445 55555554444444 3445555555555555554444445555555555555554444
No 48
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.58 E-value=1.2e-07 Score=66.68 Aligned_cols=64 Identities=27% Similarity=0.403 Sum_probs=30.9
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.|++ ++|.+..+++..|. .+++|+.+++++|.++.+++..|..+++|+.|++++|.++.++
T Consensus 134 ~L~~L~L----~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 134 NLTYLNL----AHNQLQSLPKGVFD--KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp TCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCCEEEC----CCCccCccCHHHhc--cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 3444444 45555544444444 3444555555555554444444444445555555555444443
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.57 E-value=7.5e-08 Score=71.87 Aligned_cols=65 Identities=28% Similarity=0.504 Sum_probs=54.7
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+++..|. ++++|+.|++++|+++.+.+..|..+++|+.|+|++|+++.+++
T Consensus 208 ~L~~L~L----s~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 208 KLDELDL----SGNHLSAIRPGSFQ--GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp SCCEEEC----TTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred ccCEEEC----CCCccCccChhhhc--cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 6777888 88888888788887 78888888888888888888888888889999999998888775
No 50
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.57 E-value=1e-07 Score=72.41 Aligned_cols=64 Identities=28% Similarity=0.427 Sum_probs=34.2
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.+++|++ ++|.+..+++..|. ++++|+.|++++|.++.+++..|.++++|+.|++++|.++.++
T Consensus 53 ~L~~L~L----s~n~i~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 116 (570)
T 2z63_A 53 ELQVLDL----SRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116 (570)
T ss_dssp SCCEEEC----TTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred CceEEEC----CCCcCCccCccccc--CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCC
Confidence 4445555 55555555555554 4555555555555555555555555555555555555555443
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.57 E-value=8.4e-08 Score=71.82 Aligned_cols=65 Identities=37% Similarity=0.428 Sum_probs=57.5
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+++..|. ++++|+.|++++|.++.+++..|..+++|+.|++++|.++.+++
T Consensus 100 ~L~~L~L----s~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 164 (452)
T 3zyi_A 100 HLEVLQL----GRNSIRQIEVGAFN--GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS 164 (452)
T ss_dssp TCCEEEC----CSSCCCEECTTTTT--TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT
T ss_pred CCCEEEC----CCCccCCcChhhcc--CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCH
Confidence 7888999 99999999888888 78899999999999999988888889999999999998888765
No 52
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.55 E-value=6e-08 Score=64.13 Aligned_cols=64 Identities=19% Similarity=0.306 Sum_probs=35.6
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc-ccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~-~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.+++ ++|.+..+++..|. ++++|+.+++++|.++.++. ..+..+++|+.+++++|.++.+|
T Consensus 65 ~L~~L~L----s~N~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~ 129 (176)
T 1a9n_A 65 RLKTLLV----NNNRICRIGEGLDQ--ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129 (176)
T ss_dssp SCCEEEC----CSSCCCEECSCHHH--HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred CCCEEEC----CCCcccccCcchhh--cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH
Confidence 4555555 55655555555544 45556666666666555543 23555555666666666555544
No 53
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.53 E-value=5.4e-08 Score=75.80 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=27.6
Q ss_pred CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
++|.+..+++..|. ++++|+.|++++|.++.+++..|..+++|+.|++++|.++.++
T Consensus 57 s~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 113 (680)
T 1ziw_A 57 GFNTISKLEPELCQ--KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113 (680)
T ss_dssp CSSCCCCCCTTHHH--HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCCccCccCHHHHh--cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC
Confidence 44444444444443 3444555555555555554444555555555555555554443
No 54
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.52 E-value=7.1e-08 Score=72.94 Aligned_cols=65 Identities=23% Similarity=0.276 Sum_probs=52.5
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.+++ ++|.+..+++..|. ++++|+.|++++|.++.+.+..|..+++|++|++++|.++.+|.
T Consensus 22 ~L~~L~L----s~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 86 (520)
T 2z7x_B 22 KTTILNI----SQNYISELWTSDIL--SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC 86 (520)
T ss_dssp TCSEEEC----CSSCCCCCCHHHHT--TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC
T ss_pred cccEEEC----CCCcccccChhhcc--ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc
Confidence 4677888 88888888877777 67888888888888888877778888888888888888887765
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.51 E-value=2.4e-07 Score=65.22 Aligned_cols=36 Identities=39% Similarity=0.537 Sum_probs=12.9
Q ss_pred cccEEeccCCCCcccCcccccCCcCCcEEeCCCCCC
Q psy17697 68 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103 (110)
Q Consensus 68 ~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l 103 (110)
+|+.+++++|.++.+++..|..+++|+.|++++|.+
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence 333333333333333333333333333333333333
No 56
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.51 E-value=1.4e-07 Score=64.85 Aligned_cols=65 Identities=29% Similarity=0.427 Sum_probs=51.2
Q ss_pred eee-EEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCC-CcccCcccccCC-cCCcEEeCCCCCCccccCC
Q psy17697 38 AAR-VLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGL-GILIELDLTKNRIHTLHPG 109 (110)
Q Consensus 38 ~l~-~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~-l~~i~~~~f~~l-~~L~~l~Ls~N~l~~l~~~ 109 (110)
.++ .+++ ++|.+..+|...|. + ++|+.+++++|. ++.+++..|..+ ++|+.+++++|.++.+|+.
T Consensus 156 ~L~~~L~l----~~n~l~~i~~~~~~--~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 156 NETLTLKL----YNNGFTSVQGYAFN--G-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp SSEEEEEC----CSCCCCEECTTTTT--T-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred cceeEEEc----CCCCCcccCHhhcC--C-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 566 7777 88888888887776 4 678888888884 888888778888 8888888888888877753
No 57
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.50 E-value=1.8e-07 Score=68.53 Aligned_cols=65 Identities=22% Similarity=0.311 Sum_probs=39.7
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.+++|++ ++|.+..+++..|. ++++|+.|++++|.++.+++..|..+++|+.|++++|.++.+|+
T Consensus 70 ~L~~L~L----~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 134 (390)
T 3o6n_A 70 QVELLNL----NDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 134 (390)
T ss_dssp CCSEEEC----TTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCcEEEC----CCCcccccChhhcc--CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH
Confidence 4556666 66666666665555 55666666666666666666555666666666666666665554
No 58
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.49 E-value=8e-08 Score=63.50 Aligned_cols=63 Identities=30% Similarity=0.332 Sum_probs=56.7
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+ ..|. .+++|+.+++++|.++.+++..|..+++|+.|++++|.++.+|+
T Consensus 43 ~L~~L~L----s~N~l~~~--~~l~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 105 (176)
T 1a9n_A 43 QFDAIDF----SDNEIRKL--DGFP--LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD 105 (176)
T ss_dssp CCSEEEC----CSSCCCEE--CCCC--CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGG
T ss_pred CCCEEEC----CCCCCCcc--cccc--cCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchh
Confidence 6889999 99999988 4666 68999999999999999988878899999999999999988764
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.47 E-value=1.7e-07 Score=67.95 Aligned_cols=65 Identities=29% Similarity=0.341 Sum_probs=59.2
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+++..|. ++++|+.|++++|.++.+++..|..+++|+.|++++|.++.++.
T Consensus 77 ~L~~L~L----~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 141 (353)
T 2z80_A 77 NLQALVL----TSNGINTIEEDSFS--SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE 141 (353)
T ss_dssp TCCEEEC----TTSCCCEECTTTTT--TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS
T ss_pred CCCEEEC----CCCccCccCHhhcC--CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc
Confidence 7889999 99999999888888 78999999999999999988888999999999999999988775
No 60
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.47 E-value=1.8e-07 Score=69.46 Aligned_cols=65 Identities=26% Similarity=0.319 Sum_probs=34.6
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+++..|. ++++|+.|++++|.++.+.+..|..+++|+.|++++|+++.+++
T Consensus 324 ~L~~L~L----s~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 324 HLLKLNL----SQNFLGSIDSRMFE--NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp TCCEEEC----CSSCCCEECGGGGT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCEEEC----CCCccCCcChhHhc--CcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCH
Confidence 4445555 55555555544444 45555555555555555555555555555555555555555443
No 61
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.47 E-value=3.3e-07 Score=67.11 Aligned_cols=64 Identities=20% Similarity=0.347 Sum_probs=34.6
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.|++ ++|.+..+++..|. ++++|+.|++++|.++.+++..|..+++|+.|++++|.++.++
T Consensus 94 ~L~~L~L----~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 94 TIQKLYM----GFNAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp TCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CcCEEEC----CCCCCCcCCHHHhc--CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 4555555 55555555555554 4555555555555555555554555555555555555555443
No 62
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.46 E-value=2.5e-07 Score=72.08 Aligned_cols=64 Identities=27% Similarity=0.422 Sum_probs=43.3
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.+++ ++|.+..+|...|. ++++|+.+++++|+++.+++..|..+++|+.|++++|.++.++
T Consensus 537 ~L~~L~L----~~N~l~~i~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 537 HLHILNL----ESNGFDEIPVEVFK--DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp TCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred CCCEEEC----CCCCCCCCCHHHcc--cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 3556666 66666666666666 5667777777777777776666666777777777777766654
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.45 E-value=2.5e-07 Score=64.85 Aligned_cols=64 Identities=28% Similarity=0.427 Sum_probs=39.8
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.|++ ++|.+..+++..|. ++++|+.+++++|.++.+.+..|..+++|+.|++++|.++.++
T Consensus 53 ~L~~L~l----~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 116 (276)
T 2z62_A 53 ELQVLDL----SRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116 (276)
T ss_dssp TCSEEEC----TTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred CCcEEEC----CCCcCCccCHHHcc--CCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccC
Confidence 5566666 66666666666665 5566666666666666666555666666666666666555544
No 64
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.44 E-value=2.5e-07 Score=66.76 Aligned_cols=60 Identities=27% Similarity=0.325 Sum_probs=56.1
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~ 104 (110)
.++.|++ ++|.|..+++..|. ++++|+.|+|++|+++.+++..|..++ |+.|+|.+|.+.
T Consensus 57 ~L~~L~l----~~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 57 ELRNLTI----VKSGLRFVAPDAFH--FTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSEEEC----CSSCCCEECTTGGG--SCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCEEEC----CCCccceeCHHHhc--CCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8999999 99999999999998 799999999999999999998887766 999999999986
No 65
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.42 E-value=2.3e-07 Score=67.49 Aligned_cols=65 Identities=29% Similarity=0.451 Sum_probs=56.9
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEecc-CCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLK-DCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~-~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~ 109 (110)
.++.+++ ++|.|+.++...|. ...++.+++. .|.++.+++++|.++++|+.|++++|+|+.+|++
T Consensus 155 ~l~~L~L----~~N~i~~i~~~~f~---~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 155 ESVILWL----NKNGIQEIHNSAFN---GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp SCEEEEC----CSSCCCEECTTSST---TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred hhhhhcc----ccccccCCChhhcc---ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence 4667889 99999999999987 4678899987 5789999999999999999999999999999864
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.42 E-value=4.6e-07 Score=64.21 Aligned_cols=65 Identities=26% Similarity=0.319 Sum_probs=49.2
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+++..|. .+++|+.+++++|.++.+++..|..+++|+.|++++|.++..++
T Consensus 176 ~L~~L~L----s~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 176 NLTFLDL----SQCQLEQLSPTAFN--SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp TCCEEEC----TTSCCCEECTTTTT--TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred CCCEEEC----CCCCcCCcCHHHhc--CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 6777777 78877777777776 67778888888888887777667777788888888887766543
No 67
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.41 E-value=3.3e-07 Score=70.38 Aligned_cols=64 Identities=30% Similarity=0.466 Sum_probs=47.5
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.|++ ++|.+..+++..|. ++++|+.|++++|.++.+.|..|.++++|+.|++++|.++.++
T Consensus 57 ~L~~L~L----s~n~l~~i~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 120 (606)
T 3vq2_A 57 ELQWLDL----SRCEIETIEDKAWH--GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120 (606)
T ss_dssp TCCEEEC----TTCCCCEECTTTTT--TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSS
T ss_pred cCcEEeC----CCCcccccCHHHhh--chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccc
Confidence 6777777 77777777777776 6777777777777777777777777777777777777776665
No 68
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.41 E-value=2.8e-07 Score=69.06 Aligned_cols=65 Identities=28% Similarity=0.448 Sum_probs=47.0
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..++...|. ++++|+.|++++|.++.+.+..|..+++|+.|++++|.++.+++
T Consensus 249 ~L~~L~L----s~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 249 YLRFLNL----SYNPISTIEGSMLH--ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp TCCEEEC----CSSCCCEECTTSCT--TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred ccCeeEC----CCCcCCccChhhcc--ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence 5666777 77777777776666 56777777777777777777777777777777777777776654
No 69
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.40 E-value=4.2e-07 Score=70.44 Aligned_cols=65 Identities=22% Similarity=0.311 Sum_probs=41.2
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+++..|. ++++|+.|++++|.++.+++..|..+++|+.|+|++|.++.+|+
T Consensus 76 ~L~~L~L----~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 140 (597)
T 3oja_B 76 QVELLNL----NDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 140 (597)
T ss_dssp CCSEEEC----TTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCcEEEC----CCCCCCCCChHHhc--CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCH
Confidence 4556666 66666666666665 56666666666666666666656666666666666666665554
No 70
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.40 E-value=5.5e-07 Score=69.75 Aligned_cols=65 Identities=20% Similarity=0.338 Sum_probs=42.4
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+++..|. ++++|+.|++++|.++.+++..|..+++|+.|++++|.++.+++
T Consensus 100 ~L~~L~L----~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 164 (597)
T 3oja_B 100 TIQKLYM----GFNAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164 (597)
T ss_dssp TCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred CCCEEEC----CCCcCCCCCHHHHc--CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence 5666666 66666666666665 56666666666666666666656666666666666666665544
No 71
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.39 E-value=2.7e-07 Score=60.26 Aligned_cols=64 Identities=27% Similarity=0.270 Sum_probs=30.3
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc-ccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~-~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.|++ ++|.+....+..+. .+++|+.|++++|.++.++. ..|..+++|+.|++++|.++.++
T Consensus 72 ~L~~L~L----s~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 72 KLKKLEL----SENRIFGGLDMLAE--KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp SCCEEEE----ESCCCCSCCCHHHH--HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred CCCEEEC----cCCcCchHHHHHHh--hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH
Confidence 3444555 55555543333333 24455555555555555432 33444555555555555554443
No 72
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.39 E-value=4e-07 Score=65.27 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=25.8
Q ss_pred CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
++|.+..++...|. .+++|+.+++++|.++.++.. +..+++|+.+++++|.++.++
T Consensus 224 s~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 224 SFNSISAVDNGSLA--NTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp CSSCCCEECTTTGG--GSTTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCCCCCC
T ss_pred CCCcCceeChhhcc--CCCCCCEEECCCCcCccCChh-hccCCCcCEEECCCCcCCccC
Confidence 44444444444444 344444444444444444332 344444555555555544443
No 73
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.38 E-value=2.7e-07 Score=60.28 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=59.5
Q ss_pred eeeEEEEeeCCCCccCCCCCc-CccCccCcccccEEeccCCCCcccCc---ccccCCcCCcEEeCCCCCCccccCC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPA-DAFRSTGLVNLHNLLLKDCNITDIDP---DAFSGLGILIELDLTKNRIHTLHPG 109 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~-~~f~~~~~~~L~~l~l~~n~l~~i~~---~~f~~l~~L~~l~Ls~N~l~~l~~~ 109 (110)
.++.|++ ++|.+..++. ..|. .+++|+.+++++|.++.+++ ..|..+++|+.+++++|.+..+|.+
T Consensus 96 ~L~~L~L----s~N~l~~~~~~~~l~--~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 96 NLTHLNL----SGNKLKDISTLEPLK--KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp TCCEEEC----BSSSCCSSGGGGGGS--SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred CCCEEec----cCCccCcchhHHHHh--cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 7889999 9999999875 5666 68999999999999999987 5789999999999999999999875
No 74
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.38 E-value=4.4e-07 Score=68.95 Aligned_cols=65 Identities=32% Similarity=0.430 Sum_probs=46.0
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+++..|. ++++|+.+++++|.++.+++.+|..+++|+.|++++|.++.+++
T Consensus 29 ~l~~L~L----s~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 29 STKNLDL----SFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (570)
T ss_dssp SCCEEEC----CSCCCCEECTTTTT--TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred cccEEEc----cCCccCccChhHhh--CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH
Confidence 5666777 77777777776666 56777777777777777777667777777777777777766654
No 75
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.35 E-value=2.8e-07 Score=66.24 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=31.8
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.|++ ++|.+..+++..|. .+++|+.+++++|.++.++.. +..+++|+.+++++|.++.++
T Consensus 218 ~L~~L~L----~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 218 KLYRLGL----GHNQIRMIENGSLS--FLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp TCSCCBC----CSSCCCCCCTTGGG--GCTTCCEEECCSSCCCBCCTT-GGGCTTCCEEECCSSCCCBCC
T ss_pred CCCEEEC----CCCcCCcCChhHhh--CCCCCCEEECCCCcCeecChh-hhcCccCCEEECCCCCCCccC
Confidence 3444444 55555555544444 445555555555555544333 444555555555555555544
No 76
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.30 E-value=5.6e-07 Score=57.63 Aligned_cols=65 Identities=23% Similarity=0.232 Sum_probs=39.4
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccC-cccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDID-PDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~-~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.+++ ++|.+....+..+. .+++|+.+++++|.++.++ +..+..+++|+.+++++|.++.+++
T Consensus 65 ~L~~L~L----s~n~i~~~~~~~~~--~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 65 KLKKLEL----SDNRVSGGLEVLAE--KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp TCCEEEC----CSSCCCSCTHHHHH--HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred CCCEEEC----CCCcccchHHHHhh--hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 5566666 66666664344443 3566666666666666653 2446666667777777776665543
No 77
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.29 E-value=8.1e-07 Score=69.11 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=40.3
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccC-cccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDID-PDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~-~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.++.+| .|. ++++|+.|++++|.++.+. |..|..+++|+.|+|++|.++.+|+
T Consensus 487 ~L~~L~L----s~N~l~~lp--~l~--~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 487 CLEVLQA----SDNALENVD--GVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp TCCEEEC----CSSCCCCCG--GGT--TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCEEEC----CCCCCCCCc--ccC--CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 5556666 666666655 344 4666667777777666665 5556666777777777776666554
No 78
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.29 E-value=7.6e-07 Score=68.37 Aligned_cols=63 Identities=22% Similarity=0.271 Sum_probs=40.8
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l 106 (110)
.+++|++ ++|.+..+.+..|. ++++|+.|++++|.++.+.+..|..+++|+.|++++|.++.+
T Consensus 58 ~L~~L~L----s~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l 120 (606)
T 3t6q_A 58 NLTFLDL----TRCQIYWIHEDTFQ--SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI 120 (606)
T ss_dssp TCSEEEC----TTCCCCEECTTTTT--TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCG
T ss_pred cceEEEC----CCCccceeChhhcc--CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccC
Confidence 5666666 66666666666666 566666666666666666666666666666666666666554
No 79
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.29 E-value=3.1e-07 Score=58.84 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=54.6
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.+++ ++|.+..+ ..|. .+++|+.+++++|.++...+..+..+++|+.|++++|.++.++
T Consensus 43 ~L~~L~l----~~n~l~~~--~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~ 104 (149)
T 2je0_A 43 ELEFLST----INVGLTSI--ANLP--KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104 (149)
T ss_dssp TCCEEEC----TTSCCCCC--TTCC--CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHH
T ss_pred CCcEEEC----cCCCCCCc--hhhh--cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChH
Confidence 6889999 99999998 5666 6899999999999999966776778999999999999998764
No 80
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.28 E-value=8.1e-07 Score=67.36 Aligned_cols=63 Identities=35% Similarity=0.430 Sum_probs=57.4
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l 106 (110)
.+++|++ ++|.+..+++..|. ++++|+.|++++|.++.+++..|..+++|+.|++++|.++.+
T Consensus 51 ~L~~L~L----s~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 113 (549)
T 2z81_A 51 NLQVLIL----KSSRINTIEGDAFY--SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL 113 (549)
T ss_dssp TCCEEEC----TTSCCCEECTTTTT--TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSS
T ss_pred cccEEEC----CCCCcCccChhhcc--ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccccc
Confidence 7889999 99999999988888 789999999999999999988899999999999999998854
No 81
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.26 E-value=5.1e-07 Score=64.75 Aligned_cols=75 Identities=27% Similarity=0.388 Sum_probs=38.0
Q ss_pred CCcccccCceeEEE---EeeeEEEEeeCCCCccCCC---CCcCccCccCcccccEEeccC-CCCcccCcccccCCcCCcE
Q psy17697 23 SCFNTWLSVGKHHA---LAARVLKLKIGEKSNNIPH---LPADAFRSTGLVNLHNLLLKD-CNITDIDPDAFSGLGILIE 95 (110)
Q Consensus 23 ~c~c~~~~~~~~~~---l~l~~l~l~~~~~~n~l~~---~~~~~f~~~~~~~L~~l~l~~-n~l~~i~~~~f~~l~~L~~ 95 (110)
.|.|.|.++.|... -.++.+++ ++|.+.. +|+ .|. .+++|+.|++++ |.+....|..|..+++|+.
T Consensus 33 ~C~~~w~gv~C~~~~~~~~l~~L~L----~~~~l~~~~~~~~-~l~--~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~ 105 (313)
T 1ogq_A 33 CCNRTWLGVLCDTDTQTYRVNNLDL----SGLNLPKPYPIPS-SLA--NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105 (313)
T ss_dssp TTTTCSTTEEECCSSSCCCEEEEEE----ECCCCSSCEECCG-GGG--GCTTCSEEEEEEETTEESCCCGGGGGCTTCSE
T ss_pred CCcCCCcceEeCCCCCCceEEEEEC----CCCCccCCcccCh-hHh--CCCCCCeeeCCCCCcccccCChhHhcCCCCCE
Confidence 45666998888643 24555555 5555553 332 333 345555555552 4444433433444444444
Q ss_pred EeCCCCCCc
Q psy17697 96 LDLTKNRIH 104 (110)
Q Consensus 96 l~Ls~N~l~ 104 (110)
|++++|.++
T Consensus 106 L~Ls~n~l~ 114 (313)
T 1ogq_A 106 LYITHTNVS 114 (313)
T ss_dssp EEEEEECCE
T ss_pred EECcCCeeC
Confidence 444444443
No 82
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.26 E-value=8.7e-07 Score=71.22 Aligned_cols=62 Identities=35% Similarity=0.410 Sum_probs=39.1
Q ss_pred eeeEEEEeeCCCCc-cCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697 38 AARVLKLKIGEKSN-NIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 105 (110)
Q Consensus 38 ~l~~l~l~~~~~~n-~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~ 105 (110)
.++.|++ ++| .+..+++..|. ++++|+.|++++|.++.+.+..|.++++|+.|+|++|.++.
T Consensus 49 ~L~~LdL----s~n~~~~~i~~~~f~--~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 111 (844)
T 3j0a_A 49 QLQLLEL----GSQYTPLTIDKEAFR--NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD 111 (844)
T ss_dssp SCSEEEE----CTTCCCCEECTTTTS--SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS
T ss_pred cCeEEeC----CCCCCccccCHHHhc--CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc
Confidence 5555666 555 33445555565 56666666666666666666666666677777777666654
No 83
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.24 E-value=2.4e-06 Score=65.44 Aligned_cols=62 Identities=26% Similarity=0.325 Sum_probs=55.3
Q ss_pred eeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697 39 ARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109 (110)
Q Consensus 39 l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~ 109 (110)
.+.+++ ++|.++.+|...+ ++++.+++++|.++.+++..|..+++|+.|++++|.++.++++
T Consensus 33 ~~~l~l----s~~~L~~ip~~~~-----~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 94 (562)
T 3a79_B 33 ESMVDY----SNRNLTHVPKDLP-----PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH 94 (562)
T ss_dssp CCEEEC----TTSCCCSCCTTSC-----TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT
T ss_pred CcEEEc----CCCCCccCCCCCC-----CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH
Confidence 357889 9999999998664 5799999999999999999999999999999999999988653
No 84
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.20 E-value=2.4e-06 Score=60.04 Aligned_cols=60 Identities=28% Similarity=0.465 Sum_probs=32.9
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.+++ ++|.+..++ .+. .+++|+.|++++|.++.+++ |..+++|+.|++++|.++.++
T Consensus 42 ~L~~L~l----~~n~i~~l~--~l~--~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~ 101 (263)
T 1xeu_A 42 GVQNFNG----DNSNIQSLA--GMQ--FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLN 101 (263)
T ss_dssp TCSEEEC----TTSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCT
T ss_pred cCcEEEC----cCCCcccch--HHh--hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcC
Confidence 4555555 555555554 233 35555566666655555544 555555555555555555544
No 85
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.20 E-value=1.2e-06 Score=69.77 Aligned_cols=62 Identities=27% Similarity=0.381 Sum_probs=29.1
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.|++ ++|.+..++...|. +++|+.|+|++|.++.++. .|..+++|+.|+|++|.|+.+|
T Consensus 225 ~L~~L~L----s~n~l~~l~~~~~~---l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp 286 (727)
T 4b8c_D 225 LWHALDL----SNLQIFNISANIFK---YDFLTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTSLP 286 (727)
T ss_dssp CCCEEEC----TTSCCSCCCGGGGG---CCSCSCCBCTTSCCSCCCG-GGGGGTTCCEEECTTSCCSSCC
T ss_pred CCcEEEC----CCCCCCCCChhhcC---CCCCCEEEeeCCcCcccCh-hhhCCCCCCEEeCcCCcCCccC
Confidence 3444555 55555555554442 4444444554444444432 2444444444444444444443
No 86
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.18 E-value=1.5e-06 Score=62.82 Aligned_cols=63 Identities=24% Similarity=0.473 Sum_probs=42.1
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+|+..+. +++|+.|++++|.++.++. .|..+++|+.|++++|.++.+|+
T Consensus 82 ~l~~L~L----~~n~l~~lp~~l~~---l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~ 144 (328)
T 4fcg_A 82 GRVALEL----RSVPLPQFPDQAFR---LSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLRALPA 144 (328)
T ss_dssp TCCEEEE----ESSCCSSCCSCGGG---GTTCSEEEEESSCCCCCCS-CGGGGTTCSEEEEESCCCCCCCG
T ss_pred ceeEEEc----cCCCchhcChhhhh---CCCCCEEECCCCCccchhH-HHhccCCCCEEECCCCccccCcH
Confidence 5667777 77777777766543 6677777777777775543 35666777777777777766653
No 87
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.18 E-value=2.5e-06 Score=66.33 Aligned_cols=61 Identities=30% Similarity=0.369 Sum_probs=48.9
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.|++ ++|.+..+|. .|. ++++|+.|++++|.++.++ .|..+++|+.|+|++|.|+.++
T Consensus 464 ~L~~L~L----s~N~l~~lp~-~~~--~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~ 524 (567)
T 1dce_A 464 LVTHLDL----SHNRLRALPP-ALA--ALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSA 524 (567)
T ss_dssp TCCEEEC----CSSCCCCCCG-GGG--GCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSS
T ss_pred cCcEeec----Ccccccccch-hhh--cCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCC
Confidence 6778888 8888888876 444 5788888888888888875 5788888888888888888773
No 88
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.13 E-value=1.1e-06 Score=63.04 Aligned_cols=62 Identities=23% Similarity=0.303 Sum_probs=53.3
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.|++ ++|.+..+++..|. .+++|+.|++++|.++.+.+ |..+++|+.|++++|.++.++
T Consensus 35 ~L~~L~L----~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~ 96 (317)
T 3o53_A 35 NVKELDL----SGNPLSQISAADLA--PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL 96 (317)
T ss_dssp GCSEEEC----TTSCCCCCCHHHHT--TCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE
T ss_pred CCCEEEC----cCCccCcCCHHHhh--CCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc
Confidence 5788999 99999999888888 78999999999999987765 788889999999999887765
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.13 E-value=1.6e-06 Score=65.96 Aligned_cols=63 Identities=22% Similarity=0.288 Sum_probs=55.1
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+++..|. .+++|+.|++++|.++.+.+ |..+++|+.|++++|.++.+++
T Consensus 35 ~L~~L~L----s~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~ 97 (487)
T 3oja_A 35 NVKELDL----SGNPLSQISAADLA--PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV 97 (487)
T ss_dssp GCCEEEC----CSSCCCCCCGGGGT--TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE
T ss_pred CccEEEe----eCCcCCCCCHHHHh--CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC
Confidence 5788999 99999999988888 78999999999999988765 7888999999999998887664
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.13 E-value=2.6e-06 Score=57.03 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=32.6
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCC-Cccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR-IHTL 106 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~-l~~l 106 (110)
.++.|++ ++|.+.......|. .+++|+.|++++|.++...+..|..+++|+.|++++|. ++.+
T Consensus 89 ~L~~L~l----~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~ 152 (197)
T 4ezg_A 89 NLERLRI----MGKDVTSDKIPNLS--GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152 (197)
T ss_dssp TCCEEEE----ECTTCBGGGSCCCT--TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC
T ss_pred CCCEEEe----ECCccCcccChhhc--CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc
Confidence 4555555 55555543333344 45555555555555555444445555555555555554 4443
No 91
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.11 E-value=3.8e-06 Score=67.50 Aligned_cols=65 Identities=32% Similarity=0.436 Sum_probs=40.6
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+++..|. ++++|+.|++++|.++.+.+..|.++++|+.|++++|.++.+++
T Consensus 291 ~L~~L~L----~~n~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 291 DLKVLNL----AYNKINKIADEAFY--GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp CCCEEEE----ESCCCCEECTTTTT--TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred CCCEEEC----CCCcCCCCChHHhc--CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh
Confidence 5566666 66666666666665 56666666666666666666556666666666666666655543
No 92
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.10 E-value=1.8e-06 Score=68.78 Aligned_cols=62 Identities=26% Similarity=0.291 Sum_probs=28.7
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.|++ ++|.|..+|.. |. .+++|+.|+|++|.|+.++. .|..+++|+.|+|++|.|+.+|
T Consensus 248 ~L~~L~L----s~N~l~~lp~~-~~--~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~lp 309 (727)
T 4b8c_D 248 FLTRLYL----NGNSLTELPAE-IK--NLSNLRVLDLSHNRLTSLPA-ELGSCFQLKYFYFFDNMVTTLP 309 (727)
T ss_dssp SCSCCBC----TTSCCSCCCGG-GG--GGTTCCEEECTTSCCSSCCS-SGGGGTTCSEEECCSSCCCCCC
T ss_pred CCCEEEe----eCCcCcccChh-hh--CCCCCCEEeCcCCcCCccCh-hhcCCCCCCEEECCCCCCCccC
Confidence 3444445 55555544432 22 34455555555555554422 2444445555555555544444
No 93
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.09 E-value=3.6e-06 Score=60.25 Aligned_cols=64 Identities=20% Similarity=0.140 Sum_probs=41.1
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccc-cCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAF-SGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f-~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.+++ ++|.+..+++..|. .+++|+.|++++|.++.+.+..+ ..+++|+.|++++|.++.++
T Consensus 121 ~L~~L~l----~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 185 (317)
T 3o53_A 121 GKKNIYL----ANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (317)
T ss_dssp SCEEEEC----CSSCCCSGGGBCTG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCCEEEC----CCCCCCCccchhhh--ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence 4566666 66777766666665 56677777777777776655544 24566666666666666554
No 94
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.07 E-value=5.4e-06 Score=66.00 Aligned_cols=61 Identities=23% Similarity=0.251 Sum_probs=32.0
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~ 104 (110)
.++.+++ ++|.+....+..+. .++.|+.|++++|.+++..|..|..+++|+.|+|++|+++
T Consensus 633 ~L~~LdL----s~N~l~g~ip~~l~--~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 633 SMMFLDM----SYNMLSGYIPKEIG--SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp CCCEEEC----CSSCCBSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred cccEEEC----cCCcccccCCHHHh--ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence 3445555 55555544334444 3555555555555555444444555555555555555554
No 95
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.04 E-value=5.2e-06 Score=59.72 Aligned_cols=63 Identities=27% Similarity=0.259 Sum_probs=33.6
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCccccc-EEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLH-NLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~-~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.+.+ .+| +..+++.+|. +..+|+ .+.+++ +++.|.+.+|.++++|+.+++++|.++.+++
T Consensus 251 ~L~~l~l----~~n-i~~I~~~aF~--~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 251 YLLKIKL----PHN-LKTIGQRVFS--NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp TCCEEEC----CTT-CCEECTTTTT--TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred CCCEEEC----Ccc-cceehHHHhh--CChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 4444444 444 4555555555 445555 555555 5555555555555555555555555555543
No 96
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.03 E-value=4.4e-06 Score=60.07 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=57.6
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCc-EEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILI-ELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~-~l~Ls~N~l~~l~~ 108 (110)
.++.+++ ++|.+..+++.+|. +..+|+.+++++| ++.|.+.+|.++.+|+ .+++++ .++.+++
T Consensus 227 ~L~~l~L----~~n~i~~I~~~aF~--~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~ 290 (329)
T 3sb4_A 227 NLVSLDI----SKTNATTIPDFTFA--QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF 290 (329)
T ss_dssp TCCEEEC----TTBCCCEECTTTTT--TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT
T ss_pred CCeEEEC----CCCCcceecHhhhh--CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch
Confidence 6889999 99999999999999 8899999999998 9999999999999999 999998 7777654
No 97
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.03 E-value=7.3e-06 Score=61.88 Aligned_cols=60 Identities=25% Similarity=0.365 Sum_probs=45.2
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~ 104 (110)
.++.|++ ++|.+..+|...+. +++|+.+++++|.++.+++..|..+++|+.+++++|.++
T Consensus 422 ~L~~L~L----s~N~l~~ip~~~~~---l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 422 RIKVLDL----HSNKIKSIPKQVVK---LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp TCCEEEC----CSSCCCCCCGGGGG---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCEEEC----CCCcccccchhhhc---CCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence 4667777 77777777776663 677888888888888777766777778888888888764
No 98
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.02 E-value=8.3e-06 Score=58.23 Aligned_cols=60 Identities=22% Similarity=0.185 Sum_probs=30.2
Q ss_pred eeeEEEEeeCCCCccCCCCC-cCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLP-ADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~-~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l 106 (110)
.++.|++ ++|.+...+ ...+. .+++|+.|++++|.++.++...+ ++|+.|++++|+++.+
T Consensus 229 ~L~~L~L----s~N~l~~~~~~~~~~--~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 229 QLQGLDL----SHNSLRDAAGAPSCD--WPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp CCSEEEC----TTSCCCSSCCCSCCC--CCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSC
T ss_pred CCCEEEC----CCCcCCcccchhhhh--hcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCC
Confidence 4455555 555555543 23333 34555555555555555544322 4555555555555544
No 99
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.02 E-value=5.7e-06 Score=65.85 Aligned_cols=62 Identities=29% Similarity=0.349 Sum_probs=56.3
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 105 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~ 105 (110)
.++.|++ ++|.+....+..|. .++.|+.|++++|++++..|..|..+++|+.+++++|+++.
T Consensus 657 ~L~~L~L----s~N~l~g~ip~~l~--~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 657 YLFILNL----GHNDISGSIPDEVG--DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp TCCEEEC----CSSCCCSCCCGGGG--GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred cCCEEeC----cCCccCCCCChHHh--CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 7889999 99999976666777 68999999999999999888889999999999999999874
No 100
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.02 E-value=2e-06 Score=61.60 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=16.9
Q ss_pred cccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCc
Q psy17697 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104 (110)
Q Consensus 66 ~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~ 104 (110)
+++|+.|++++|.++...+..|..+++|+.|++++|.++
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc
Confidence 344444444444444333333444444444444444443
No 101
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.01 E-value=4.6e-06 Score=63.41 Aligned_cols=64 Identities=20% Similarity=0.140 Sum_probs=39.1
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCccccc-CCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS-GLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~-~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.|++ ++|.+..+++..|. .+++|+.|++++|.++.+.+..|. .+++|+.|+|++|.++.++
T Consensus 121 ~L~~L~L----~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 121 GKKNIYL----ANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SCEEEEC----CSSCCCSGGGBCGG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCCEEEC----CCCCCCCCCchhhc--CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 3455666 66666666665555 466677777777776665555443 4566666666666665543
No 102
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.99 E-value=5.2e-06 Score=59.28 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=20.5
Q ss_pred ccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCC
Q psy17697 67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103 (110)
Q Consensus 67 ~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l 103 (110)
++|+.|++++|.++.+++..|..+++|+.|++++|.+
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence 4555555555555555555555555555555555553
No 103
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.99 E-value=1.1e-05 Score=63.10 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=42.2
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcc-------cccEEeccCCCCcccCcccc-cCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLV-------NLHNLLLKDCNITDIDPDAF-SGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~-------~L~~l~l~~n~l~~i~~~~f-~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+|...|. +.. +|+.|++++|.++.++...+ ..+++|+.|++++|.++.+|.
T Consensus 458 ~L~~L~L----s~N~l~~i~~~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~ 530 (636)
T 4eco_A 458 PLSSINL----MGNMLTEIPKNSLK--DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT 530 (636)
T ss_dssp CCSEEEC----CSSCCSBCCSSSSE--ETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCC
T ss_pred CCCEEEC----CCCCCCCcCHHHhc--cccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcCh
Confidence 4666677 77777777666665 332 67777777777776655432 366777777777777766653
No 104
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.97 E-value=5.8e-06 Score=64.66 Aligned_cols=65 Identities=22% Similarity=0.362 Sum_probs=49.6
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCc-------CCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG-------ILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~-------~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+|...|. .+++|+.|++++|.++.++...|.... +|+.|++++|.++.+|.
T Consensus 434 ~L~~L~L----s~N~l~~lp~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 505 (636)
T 4eco_A 434 NVSSINL----SNNQISKFPKELFS--TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD 505 (636)
T ss_dssp CEEEEEC----CSSCCCSCCTHHHH--TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCG
T ss_pred CCCEEEC----cCCccCcCCHHHHc--cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccCh
Confidence 5677788 88888888877776 577888888888888877776665443 78888888888887764
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.97 E-value=1.1e-05 Score=57.41 Aligned_cols=59 Identities=37% Similarity=0.517 Sum_probs=30.5
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l 106 (110)
.++.|++ ++|.+..+ ..+. .+++|+.|++++|.++.+.+ +..+++|+.|++++|.++.+
T Consensus 135 ~L~~L~l----~~n~l~~~--~~l~--~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 135 QLESLYL----GNNKITDI--TVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp TCCEEEC----CSSCCCCC--GGGG--GCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCCEEEc----cCCcCCcc--hhhc--cCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence 3444555 55555544 2233 34555555555555555543 45555555566665555544
No 106
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.96 E-value=6.9e-06 Score=58.89 Aligned_cols=63 Identities=27% Similarity=0.481 Sum_probs=44.7
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.+++ ++|.+..++ .+. .+++|+.+++++|.++.+.+..|..+++|+.+++++|.++.+++
T Consensus 266 ~L~~L~l----~~n~l~~~~--~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 266 KLKMLNV----GSNQISDIS--VLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp TCCEEEC----CSSCCCCCG--GGG--GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CcCEEEc----cCCccCCCh--hhc--CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 5666777 777777663 344 56777777777777777777777777788888888887776543
No 107
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.94 E-value=1.1e-05 Score=57.70 Aligned_cols=7 Identities=29% Similarity=0.382 Sum_probs=2.6
Q ss_pred CCccCCC
Q psy17697 49 KSNNIPH 55 (110)
Q Consensus 49 ~~n~l~~ 55 (110)
++|.+..
T Consensus 115 ~~n~l~~ 121 (308)
T 1h6u_A 115 TSTQITD 121 (308)
T ss_dssp TTSCCCC
T ss_pred CCCCCCC
Confidence 3333333
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.94 E-value=1.3e-05 Score=56.17 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=21.6
Q ss_pred ccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 67 ~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
++|+.|++++|+++.++ .+..+++|+.|++++|+++.++
T Consensus 106 ~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~ 144 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV 144 (263)
T ss_dssp SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG
T ss_pred CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh
Confidence 34444445555444442 2556666666777776666553
No 109
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.94 E-value=1.3e-05 Score=57.26 Aligned_cols=39 Identities=36% Similarity=0.521 Sum_probs=19.1
Q ss_pred cccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106 (110)
Q Consensus 66 ~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l 106 (110)
+++|+.|++++|.++.+++ +..+++|+.|++++|.++.+
T Consensus 106 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 144 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNI 144 (308)
T ss_dssp CTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcC
Confidence 4445555555555444422 44455555555555555443
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.93 E-value=8.9e-06 Score=57.94 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=32.5
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcc---cCc-ccccCCcCCcEEeCCCCCCc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITD---IDP-DAFSGLGILIELDLTKNRIH 104 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~---i~~-~~f~~l~~L~~l~Ls~N~l~ 104 (110)
.++.|++ ++|.+..++...|. ++++|+.|++++|++.. +.. ..+..+++|+.|++++|+++
T Consensus 146 ~L~~L~L----s~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 210 (310)
T 4glp_A 146 GLKVLSI----AQAHSPAFSCEQVR--AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME 210 (310)
T ss_dssp CCCEEEE----ECCSSCCCCTTSCC--CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred CCCEEEe----eCCCcchhhHHHhc--cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence 4556666 66666666666665 55666666666665443 111 11233444555555555544
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.90 E-value=1.6e-05 Score=53.17 Aligned_cols=60 Identities=22% Similarity=0.285 Sum_probs=43.9
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 105 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~ 105 (110)
.++.|++ ++|.+..++ .+. .+++|+.+++++|.++...+..|..+++|+.|++++|.++.
T Consensus 67 ~L~~L~l----~~n~~~~~~--~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 126 (197)
T 4ezg_A 67 NIKDLTI----NNIHATNYN--PIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126 (197)
T ss_dssp TCSEEEE----ESCCCSCCG--GGT--TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred CCCEEEc----cCCCCCcch--hhh--cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence 5667777 777666554 344 56778888888888877656667788888888888888775
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.90 E-value=1.8e-05 Score=56.26 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=26.7
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 105 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~ 105 (110)
.++.|++ ++|.+..+++ +. .+++|+.|++++|.++.++. +..+++|+.|++++|.++.
T Consensus 69 ~L~~L~L----~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~i~~ 126 (291)
T 1h6t_A 69 NVTKLFL----NGNKLTDIKP--LA--NLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISD 126 (291)
T ss_dssp TCCEEEC----CSSCCCCCGG--GT--TCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCC
T ss_pred CCCEEEc----cCCccCCCcc--cc--cCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCCcCCC
Confidence 3445555 5555555444 33 34445555555554444321 3444444444444444443
No 113
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.87 E-value=2.9e-05 Score=56.02 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=21.3
Q ss_pred CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCC
Q psy17697 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 101 (110)
Q Consensus 49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N 101 (110)
++|.+..+|+. |. .+++|+.|++++|.+....+..|..+++|+.|++++|
T Consensus 214 ~~N~l~~l~~~-l~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 214 RNSPLSALGPA-IH--HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp ESSCCCCCCGG-GG--GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC
T ss_pred cCCCCCcCchh-hc--cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC
Confidence 44444444432 22 2344444444444444333333444444444444443
No 114
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.86 E-value=1.7e-05 Score=56.41 Aligned_cols=63 Identities=22% Similarity=0.205 Sum_probs=40.5
Q ss_pred eeeEEEEeeCCCCccCCCC-CcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHL-PADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~-~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.|++ ++|.+..+ |+..+...++++|+.|++++|+++.++...+ ++|+.|++++|+++.+|
T Consensus 225 ~L~~L~L----s~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~ 288 (310)
T 4glp_A 225 QPHSLDL----SHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAP 288 (310)
T ss_dssp CCSSEEC----TTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCC
T ss_pred CCCEEEC----CCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCc
Confidence 5667777 77877776 3333220012577778888887777755432 67777777777777654
No 115
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.85 E-value=2.2e-05 Score=56.20 Aligned_cols=60 Identities=33% Similarity=0.471 Sum_probs=42.0
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.+++ ++|.+..++. |. .+++|+.+++++|.++.++ .|..+++|+.|++++|.++.++
T Consensus 67 ~L~~L~l----~~n~i~~~~~--~~--~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~~n~i~~~~ 126 (347)
T 4fmz_A 67 NLEYLNL----NGNQITDISP--LS--NLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDIS 126 (347)
T ss_dssp TCCEEEC----CSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECTTSCCCCCG
T ss_pred CccEEEc----cCCccccchh--hh--cCCcCCEEEccCCcccCch--HHcCCCcCCEEECcCCcccCch
Confidence 5677777 7777777665 55 5677777777777777662 3667777777777777776654
No 116
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=3.7e-05 Score=62.77 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=45.4
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcc-------cccEEeccCCCCcccCcccc-cCCcCCcEEeCCCCCCccccC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLV-------NLHNLLLKDCNITDIDPDAF-SGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~-------~L~~l~l~~n~l~~i~~~~f-~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
.++.|++ ++|.+..+|...|. +.. +|+.|++++|.++.++...+ ..+++|+.|+|++|.++.+|.
T Consensus 698 ~L~~L~L----s~N~L~~ip~~~~~--~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~ 770 (876)
T 4ecn_A 698 PISTIIL----SNNLMTSIPENSLK--PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT 770 (876)
T ss_dssp CCSEEEC----CSCCCSCCCTTSSS--CTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCC
T ss_pred CCCEEEC----CCCcCCccChHHhc--cccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccch
Confidence 5667777 77777777777765 332 77778888887777655532 267778888888887777653
No 117
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.79 E-value=2.9e-05 Score=58.20 Aligned_cols=60 Identities=23% Similarity=0.478 Sum_probs=42.1
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.|++ ++|.+..+++ |. .+++|+.+++++|.++.+++ |..+++|+.|++++|.++.++
T Consensus 69 ~L~~L~L----s~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~ 128 (466)
T 1o6v_A 69 NLTQINF----SNNQLTDITP--LK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128 (466)
T ss_dssp TCCEEEC----CSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCEEEC----CCCccCCchh--hh--ccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh
Confidence 5667777 7777777765 55 56777777777777777655 667777777777777766654
No 118
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.74 E-value=4.6e-05 Score=62.21 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=33.7
Q ss_pred eeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccC------CCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 39 ARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKD------CNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 39 l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~------n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
++.|++ ++|.+..+|...+ .+++|+.|++++ |.+....|..|..+++|+.|+|++|.+..+|.
T Consensus 755 L~~L~L----s~N~L~~lp~~l~---~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~ 823 (876)
T 4ecn_A 755 LSNMDV----SYNCFSSFPTQPL---NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE 823 (876)
T ss_dssp CCEEEC----CSSCCSSCCCGGG---GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCS
T ss_pred cCEEEe----CCCCCCccchhhh---cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCH
Confidence 445555 5555555444333 245555555543 44444444455566666666666666666654
No 119
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.73 E-value=4e-05 Score=60.09 Aligned_cols=39 Identities=46% Similarity=0.640 Sum_probs=18.2
Q ss_pred cccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106 (110)
Q Consensus 66 ~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l 106 (110)
+++|+.|++++|.++.+.+ +..+++|+.|+|++|.|+.+
T Consensus 152 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 152 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence 4444444444444444433 44444455555555444443
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.67 E-value=7.2e-05 Score=58.39 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=28.0
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l 106 (110)
.++.|++ ++|.+..+| . .+++|+.|++++|.++.++. |.. +|+.|++++|.|+.+
T Consensus 81 ~L~~L~L----s~N~l~~ip-~-----~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~l 135 (571)
T 3cvr_A 81 QITVLEI----TQNALISLP-E-----LPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLTML 135 (571)
T ss_dssp TCSEEEC----CSSCCSCCC-C-----CCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCSCC
T ss_pred CCCEEEC----cCCCCcccc-c-----ccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCCCC
Confidence 4566666 666666665 1 13455555555555555443 222 444444444444443
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.66 E-value=7.2e-05 Score=58.38 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=5.7
Q ss_pred CCcEEeCCCCCCcc
Q psy17697 92 ILIELDLTKNRIHT 105 (110)
Q Consensus 92 ~L~~l~Ls~N~l~~ 105 (110)
+|+.|++++|.|+.
T Consensus 181 ~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 181 SLEALDVSTNLLES 194 (571)
T ss_dssp TCCEEECCSSCCSS
T ss_pred CCCEEECcCCCCCc
Confidence 34444444444433
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.65 E-value=1.3e-06 Score=58.53 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=17.2
Q ss_pred ccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697 67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 105 (110)
Q Consensus 67 ~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~ 105 (110)
++|+.|++++|.++.++ .+..+++|+.|++++|.++.
T Consensus 93 ~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 93 DTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp HHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCC
T ss_pred CcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCc
Confidence 44444444444444442 23444455555555555443
No 123
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.64 E-value=8.1e-05 Score=56.15 Aligned_cols=57 Identities=28% Similarity=0.320 Sum_probs=33.7
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l 106 (110)
.++.+++ ++|.++.++ +. .+++|+.|++++|.++.++ +..+++|+.|++++|.++.+
T Consensus 65 ~L~~L~L----s~n~l~~~~---~~--~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l 121 (457)
T 3bz5_A 65 GLTKLIC----TSNNITTLD---LS--QNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKL 121 (457)
T ss_dssp TCSEEEC----CSSCCSCCC---CT--TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCC
T ss_pred CCCEEEc----cCCcCCeEc---cc--cCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCee
Confidence 4555566 666665553 33 4556666666666666652 55566666666666666554
No 124
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.64 E-value=6.1e-05 Score=59.05 Aligned_cols=59 Identities=31% Similarity=0.397 Sum_probs=29.4
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l 106 (110)
.++.|++ ++|.+..++ .+. .+++|+.|++++|.++.++ .+..+++|+.|+|++|.++.+
T Consensus 88 ~L~~L~L----s~N~l~~l~--~l~--~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l 146 (605)
T 1m9s_A 88 NLGWLFL----DENKIKDLS--SLK--DLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI 146 (605)
T ss_dssp TCCEEEC----CSSCCCCCT--TST--TCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC
T ss_pred CCCEEEC----cCCCCCCCh--hhc--cCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc
Confidence 4444555 555554443 233 3455555555555555541 244555555555555555443
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.63 E-value=9.1e-05 Score=55.88 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=34.0
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l 106 (110)
.++.|++ ++|.+..++ |. .+++|+.+++++|.++.++ +..+++|+.|++++|.++.+
T Consensus 86 ~L~~L~L----s~N~l~~~~---~~--~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l 142 (457)
T 3bz5_A 86 NLTYLAC----DSNKLTNLD---VT--PLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI 142 (457)
T ss_dssp TCSEEEC----CSSCCSCCC---CT--TCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCC
T ss_pred CCCEEEC----cCCCCceee---cC--CCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCcccee
Confidence 5556666 666666653 44 4566666666666666652 55566666666666666554
No 126
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.56 E-value=7.8e-05 Score=53.19 Aligned_cols=61 Identities=26% Similarity=0.250 Sum_probs=49.4
Q ss_pred eeeEEEEeeCCCCccCCCCCc--CccCccCcccccEEeccCCCCcccCc-ccccCCcCCcEEeCCCCCCcc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPA--DAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHT 105 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~--~~f~~~~~~~L~~l~l~~n~l~~i~~-~~f~~l~~L~~l~Ls~N~l~~ 105 (110)
.++.|++ ++|.|..++. ..+. .+++|+.|+|++|.++.+.. ..+..+ +|+.|+|++|.+..
T Consensus 171 ~L~~L~L----s~N~l~~l~~l~~~~~--~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 171 ELLSLNL----SNNRLYRLDDMSSIVQ--KAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp TCCEEEC----TTSCCCCCGGGTTHHH--HSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred CCCEEEC----CCCCCCCCccchhHHh--hCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 6889999 9999998775 3444 57899999999999998833 344444 99999999999874
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.55 E-value=0.00013 Score=57.40 Aligned_cols=55 Identities=25% Similarity=0.288 Sum_probs=30.5
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l 106 (110)
.++.|++ ++|.++.+|. . +++|+.|++++|.++.++. .+++|+.|++++|.++.+
T Consensus 62 ~L~~L~L----~~N~l~~lp~---~---l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l 116 (622)
T 3g06_A 62 HITTLVI----PDNNLTSLPA---L---PPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHL 116 (622)
T ss_dssp TCSEEEE----CSCCCSCCCC---C---CTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCC
T ss_pred CCcEEEe----cCCCCCCCCC---c---CCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCC
Confidence 5666666 6666666665 1 3456666666666665544 234444555555544444
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.54 E-value=0.00011 Score=57.74 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=19.7
Q ss_pred ccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697 67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 105 (110)
Q Consensus 67 ~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~ 105 (110)
++|+.|++++|.++.+++. |..+++|+.|++++|.++.
T Consensus 261 ~~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 261 SGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp TTCCEEECCSSCCCSCCGG-GGGSCTTCEEECCSCCCCH
T ss_pred ccCcEEeCCCCCCCcCCHH-HhhccccCEEEecCCCCCC
Confidence 3455555555555554332 4555555555555555543
No 129
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.52 E-value=0.00012 Score=54.77 Aligned_cols=14 Identities=43% Similarity=0.280 Sum_probs=5.5
Q ss_pred CcCCcEEeCCCCCC
Q psy17697 90 LGILIELDLTKNRI 103 (110)
Q Consensus 90 l~~L~~l~Ls~N~l 103 (110)
+++|+.|++++|.+
T Consensus 308 l~~L~~L~L~~n~l 321 (466)
T 1o6v_A 308 LKNLTYLTLYFNNI 321 (466)
T ss_dssp CTTCSEEECCSSCC
T ss_pred CCCCCEEECcCCcC
Confidence 33333444444333
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.44 E-value=4e-05 Score=55.69 Aligned_cols=62 Identities=19% Similarity=0.232 Sum_probs=29.6
Q ss_pred eeEEEEeeCCCCccCCCCCcCccCccCc-----ccccEEeccCCCCcccCccc----ccCC-cCCcEEeCCCCCCccc
Q psy17697 39 ARVLKLKIGEKSNNIPHLPADAFRSTGL-----VNLHNLLLKDCNITDIDPDA----FSGL-GILIELDLTKNRIHTL 106 (110)
Q Consensus 39 l~~l~l~~~~~~n~l~~~~~~~f~~~~~-----~~L~~l~l~~n~l~~i~~~~----f~~l-~~L~~l~Ls~N~l~~l 106 (110)
++.|++ ++|.+.......|. .. ++|+.|++++|.++...+.. +... ++|+.|++++|.++..
T Consensus 53 L~~L~L----s~N~l~~~~~~~l~--~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 53 VTSLNL----SGNSLGFKNSDELV--QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp CCEEEC----CSSCGGGSCHHHHH--HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred eeEEEC----cCCCCCHHHHHHHH--HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 445555 55555544443333 22 45555555555555544432 2222 4555555555555443
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.43 E-value=0.0003 Score=52.95 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=12.0
Q ss_pred CCccCCCCCcCccCccCcccccEEeccCCCCcc
Q psy17697 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITD 81 (110)
Q Consensus 49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~ 81 (110)
++|.+..+| .|. ++++|+.+++++|+++.
T Consensus 139 ~~n~l~~lp--~~~--~l~~L~~L~l~~N~l~~ 167 (454)
T 1jl5_A 139 SNNQLEKLP--ELQ--NSSFLKIIDVDNNSLKK 167 (454)
T ss_dssp CSSCCSSCC--CCT--TCTTCCEEECCSSCCSC
T ss_pred cCCCCCCCc--ccC--CCCCCCEEECCCCcCcc
Confidence 444444444 133 33444444444444333
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.34 E-value=3.4e-06 Score=56.56 Aligned_cols=39 Identities=33% Similarity=0.421 Sum_probs=19.6
Q ss_pred cccccEEeccCCCCcccCc-ccccCCcCCcEEeCCCCCCc
Q psy17697 66 LVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIH 104 (110)
Q Consensus 66 ~~~L~~l~l~~n~l~~i~~-~~f~~l~~L~~l~Ls~N~l~ 104 (110)
+++|+.+++++|.++.++. ..+..+++|+.+++++|.++
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 4455555555555554433 33445555555555555443
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.31 E-value=0.00047 Score=51.89 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=31.2
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.+++ ++|.+..+|. |. .+++|+.+++++|+++.++.. +++|+.+++++|.++.+|
T Consensus 216 ~L~~L~l----~~n~l~~lp~--~~--~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~N~l~~l~ 273 (454)
T 1jl5_A 216 SLESIVA----GNNILEELPE--LQ--NLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDLP 273 (454)
T ss_dssp TCCEEEC----CSSCCSSCCC--CT--TCTTCCEEECCSSCCSSCCSC----CTTCCEEECCSSCCSCCC
T ss_pred cccEEEC----cCCcCCcccc--cC--CCCCCCEEECCCCcCCccccc----ccccCEEECCCCcccccC
Confidence 3555666 6666665553 44 456666666666666655431 244455555555444433
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.11 E-value=9.3e-05 Score=53.75 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=33.9
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCcc--Cc-ccccEEeccCCCCcccCcccc----cC-CcCCcEEeCCCCCCc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRST--GL-VNLHNLLLKDCNITDIDPDAF----SG-LGILIELDLTKNRIH 104 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~--~~-~~L~~l~l~~n~l~~i~~~~f----~~-l~~L~~l~Ls~N~l~ 104 (110)
.++.|++ ++|.+.......+... .. ++|+.|++++|.++......+ .. ..+|+.|++++|.++
T Consensus 81 ~L~~L~L----s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 81 NVTSLNL----SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp TCCEEEC----CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred CccEEEC----cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 3556666 6666665554422200 12 556666666666666555432 22 246666666666665
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.96 E-value=0.0013 Score=49.03 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=30.0
Q ss_pred CCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697 53 IPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108 (110)
Q Consensus 53 l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~ 108 (110)
++.+...+|. + ..|+.+.+.. .++.|...+|.++.+|+.+++++|.++.++.
T Consensus 146 i~~I~~~aF~--~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~ 197 (401)
T 4fdw_A 146 LKSIGDMAFF--N-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPA 197 (401)
T ss_dssp CCEECTTTTT--T-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECT
T ss_pred ccEECHHhcC--C-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEech
Confidence 5555555555 2 3455555553 5566666666666666666666665555543
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.91 E-value=0.00088 Score=49.87 Aligned_cols=52 Identities=19% Similarity=0.237 Sum_probs=30.4
Q ss_pred cCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 52 NIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 52 ~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.++..+|. +..+|+.+.+.. .++.|...+|.++ +|+.+++.+|.+..++
T Consensus 310 ~i~~I~~~aF~--~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 310 SIRILGQGLLG--GNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp TCCEECTTTTT--TCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred ceEEEhhhhhc--CCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence 35555555665 455666666643 3566666666666 6666666666655544
No 137
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.87 E-value=0.00054 Score=48.79 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=36.5
Q ss_pred CcccccEEeccCCCCcccCc--ccccCCcCCcEEeCCCCCCccc
Q psy17697 65 GLVNLHNLLLKDCNITDIDP--DAFSGLGILIELDLTKNRIHTL 106 (110)
Q Consensus 65 ~~~~L~~l~l~~n~l~~i~~--~~f~~l~~L~~l~Ls~N~l~~l 106 (110)
.+++|+.|+|++|.++.+.+ ..+..+++|+.|+|++|.|+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence 36789999999999999764 5567899999999999999876
No 138
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.83 E-value=0.00078 Score=47.78 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=17.1
Q ss_pred cccccEEeccCCCCcccCcccccCCcCCcEEeCCCC
Q psy17697 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 101 (110)
Q Consensus 66 ~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N 101 (110)
+++|+.|++++|.++...+..+..+++|+.|++++|
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 444444455444444333334444555555555555
No 139
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.78 E-value=0.00032 Score=49.84 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=37.9
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCccc-CcccccCCcCCcEEeCCCCCCc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDI-DPDAFSGLGILIELDLTKNRIH 104 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i-~~~~f~~l~~L~~l~Ls~N~l~ 104 (110)
.++.+++ ++|.+...+...+. +++|+.+++++|.++.. .+..+..+++|+.|++++|.++
T Consensus 71 ~l~~L~l----~~n~l~~~~~~~~~---~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~ 131 (336)
T 2ast_B 71 GVIAFRC----PRSFMDQPLAEHFS---PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS 131 (336)
T ss_dssp TCSEEEC----TTCEECSCCCSCCC---CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC
T ss_pred cceEEEc----CCccccccchhhcc---CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC
Confidence 4566666 77776666665543 56677777777766543 3344566677777777777654
No 140
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.73 E-value=0.0017 Score=47.09 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=31.5
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 100 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~ 100 (110)
.++.+.+ ..+.++.+++.+|. +..+|+.+.+.. .++.|...+|.++.+|+.+.++.
T Consensus 287 ~L~~i~l----~~~~i~~I~~~aF~--~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 287 NLTKVVM----DNSAIETLEPRVFM--DCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TCCEEEE----CCTTCCEECTTTTT--TCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccc----cccccceehhhhhc--CCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECC
Confidence 4555555 55555556666665 455566665543 25556555666666665555544
No 141
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.46 E-value=0.0023 Score=40.51 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=34.4
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNIT 80 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~ 80 (110)
.++.|++ ++|.|+.++.+.|. ++++|+.++|.+|.+.
T Consensus 32 ~l~~L~L----s~N~l~~l~~~~f~--~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVL----TGNNLTALPPGLLD--ALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEEC----TTSCCSSCCTTTGG--GCTTCCEEECCSSCCB
T ss_pred CCCEEEC----CCCcCCccChhhhh--hccccCEEEecCCCee
Confidence 6889999 99999999999999 7899999999999864
No 142
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.38 E-value=0.001 Score=48.39 Aligned_cols=39 Identities=26% Similarity=0.152 Sum_probs=17.0
Q ss_pred cccccEEeccCCCCc----ccCcccccCCcCCcEEeCCCCCCc
Q psy17697 66 LVNLHNLLLKDCNIT----DIDPDAFSGLGILIELDLTKNRIH 104 (110)
Q Consensus 66 ~~~L~~l~l~~n~l~----~i~~~~f~~l~~L~~l~Ls~N~l~ 104 (110)
.++|+.|++++|.++ ..-+..+..+++|+.|+|++|.++
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 444555555555542 111223344444444555544443
No 143
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.35 E-value=0.0082 Score=43.46 Aligned_cols=62 Identities=19% Similarity=0.363 Sum_probs=48.5
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.+.+ . +.+..++..+|. +..+|+.+.+.++.++.|...+|.++.+|+.+.++.+ ++++.
T Consensus 264 ~l~~i~l----~-~~i~~i~~~aF~--~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 325 (379)
T 4h09_A 264 ALKTLNF----Y-AKVKTVPYLLCS--GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ 325 (379)
T ss_dssp TCCEEEE----C-CCCSEECTTTTT--TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred hhccccc----c-ccceeccccccc--cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEH
Confidence 4555555 3 346778888888 7788999999988999999999999999999999755 55554
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.33 E-value=0.0054 Score=44.90 Aligned_cols=61 Identities=16% Similarity=0.298 Sum_probs=36.9
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
.++.+.+ .. .++.+.+.+|. +..+|+.+.+.. .++.|...+|.++.+|+.+.++.| ++++.
T Consensus 298 ~L~~i~l----~~-~i~~I~~~aF~--~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 298 SLTEVKL----LD-SVKFIGEEAFE--SCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp TCCEEEE----CT-TCCEECTTTTT--TCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred ccccccc----cc-ccceechhhhc--CCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 4445555 33 35666666666 556677766653 366666666777777777666655 44443
No 145
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.28 E-value=0.00072 Score=49.21 Aligned_cols=40 Identities=35% Similarity=0.321 Sum_probs=19.2
Q ss_pred cccccEEeccCCCCcccC----cccc--cCCcCCcEEeCCCCCCcc
Q psy17697 66 LVNLHNLLLKDCNITDID----PDAF--SGLGILIELDLTKNRIHT 105 (110)
Q Consensus 66 ~~~L~~l~l~~n~l~~i~----~~~f--~~l~~L~~l~Ls~N~l~~ 105 (110)
.++|+.|++++|.++... +..+ ..+++|+.|++++|.++.
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 455555555555554431 1222 124555555555555543
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.89 E-value=0.011 Score=43.22 Aligned_cols=56 Identities=21% Similarity=0.402 Sum_probs=32.7
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 101 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N 101 (110)
.++.+.+ .. .++.|...+|. +..+|+.+.+.. .++.|...+|.++.+|+.+++++|
T Consensus 312 ~L~~i~l----p~-~v~~I~~~aF~--~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 312 SLKSIDI----PE-GITQILDDAFA--GCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TCCEEEC----CT-TCCEECTTTTT--TCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred CcCEEEe----CC-cccEehHhHhh--CCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCc
Confidence 4455555 33 35556666666 556666666653 356666666666666666666654
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.73 E-value=0.0055 Score=44.83 Aligned_cols=56 Identities=23% Similarity=0.351 Sum_probs=49.0
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 101 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N 101 (110)
.++.+.+ . +.++.+...+|. +..+|+.+.+..+ ++.|...+|.++.+|+.++++.+
T Consensus 321 ~L~~i~l----p-~~v~~I~~~aF~--~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 321 SLVSIDL----P-YLVEEIGKRSFR--GCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TCCEECC----C-TTCCEECTTTTT--TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCEEEe----C-CcccEEhHHhcc--CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 6778878 5 448999999999 7899999999876 89999999999999999999765
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.64 E-value=0.014 Score=42.60 Aligned_cols=53 Identities=26% Similarity=0.504 Sum_probs=41.3
Q ss_pred ccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107 (110)
Q Consensus 51 n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~ 107 (110)
+.+..++..+|. +..+|+.+.+.. .++.|...+|.++.+|+.+.++.+ ++++.
T Consensus 297 ~~i~~I~~~aF~--~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~ 349 (394)
T 4gt6_A 297 SRITELPESVFA--GCISLKSIDIPE-GITQILDDAFAGCEQLERIAIPSS-VTKIP 349 (394)
T ss_dssp TTCCEECTTTTT--TCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEECTT-CCBCC
T ss_pred CcccccCceeec--CCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEECcc-cCEEh
Confidence 567778888888 678888888875 478888888998889988888754 55543
No 149
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.64 E-value=0.0017 Score=47.82 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=35.8
Q ss_pred eeeEEEEeeCCCCccCCCCC----cCccCccCcccccEEeccCCCCcccCcccc-cCCc----CCcEEeCCCCCCc
Q psy17697 38 AARVLKLKIGEKSNNIPHLP----ADAFRSTGLVNLHNLLLKDCNITDIDPDAF-SGLG----ILIELDLTKNRIH 104 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~----~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f-~~l~----~L~~l~Ls~N~l~ 104 (110)
.++.+++ ++|.+.... ...+. ..++|+.+++++|.++......+ ..+. +|+.|++++|.++
T Consensus 29 ~L~~L~L----~~~~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 98 (461)
T 1z7x_W 29 QCQVVRL----DDCGLTEARCKDISSALR--VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98 (461)
T ss_dssp TCSEEEE----ESSCCCHHHHHHHHHHHH--TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCB
T ss_pred CccEEEc----cCCCCCHHHHHHHHHHHH--hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCC
Confidence 5666777 777665321 12233 35677777777777766433222 2333 5777777777766
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.59 E-value=0.0019 Score=47.56 Aligned_cols=13 Identities=31% Similarity=0.138 Sum_probs=5.4
Q ss_pred cCCcEEeCCCCCC
Q psy17697 91 GILIELDLTKNRI 103 (110)
Q Consensus 91 ~~L~~l~Ls~N~l 103 (110)
++|+.|+|++|.|
T Consensus 239 ~~L~~L~Ls~N~i 251 (372)
T 3un9_A 239 PSLELLHLYFNEL 251 (372)
T ss_dssp SSCCEEECTTSSC
T ss_pred CCCCEEeccCCCC
Confidence 3344444444443
No 151
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.59 E-value=0.0026 Score=46.88 Aligned_cols=35 Identities=29% Similarity=0.508 Sum_probs=15.2
Q ss_pred ccEEeccCCCCcccC----cccccCCcCCcEEeCCCCCC
Q psy17697 69 LHNLLLKDCNITDID----PDAFSGLGILIELDLTKNRI 103 (110)
Q Consensus 69 L~~l~l~~n~l~~i~----~~~f~~l~~L~~l~Ls~N~l 103 (110)
|+.|++++|.++... +..|..+++|+.|++++|.+
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence 444444444444211 33344444444444444444
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.06 E-value=0.0057 Score=44.99 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=7.0
Q ss_pred ccccEEeccCCCCcc
Q psy17697 67 VNLHNLLLKDCNITD 81 (110)
Q Consensus 67 ~~L~~l~l~~n~l~~ 81 (110)
+.|+.|++++|.++.
T Consensus 155 ~~L~~L~Ls~n~l~~ 169 (372)
T 3un9_A 155 CQITTLRLSNNPLTA 169 (372)
T ss_dssp CCCCEEECCSSCCHH
T ss_pred CccceeeCCCCCCCh
Confidence 334455555554433
No 153
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=94.54 E-value=0.088 Score=31.80 Aligned_cols=51 Identities=22% Similarity=0.271 Sum_probs=44.0
Q ss_pred CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCC
Q psy17697 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 102 (110)
Q Consensus 49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~ 102 (110)
.+..+..|...+|. +-..|+.+.+.. .++.|...+|.++.+|+.+.+.+..
T Consensus 4 ~g~~vt~I~~~aF~--~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 4 EGEPVVGMDKSLFA--GNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCCSSCSCTTT--TCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCCccCEecHHHhc--CCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCCC
Confidence 45678899999999 789999999987 5789999999999999999887754
No 154
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=93.91 E-value=0.009 Score=45.36 Aligned_cols=62 Identities=21% Similarity=0.178 Sum_probs=43.7
Q ss_pred eeeEEEEeeCCCCccCCCCC-cCccCccCcccccEEeccCCCCcccC-cccccCCcCCcEEeCCCCCCcc
Q psy17697 38 AARVLKLKIGEKSNNIPHLP-ADAFRSTGLVNLHNLLLKDCNITDID-PDAFSGLGILIELDLTKNRIHT 105 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~-~~~f~~~~~~~L~~l~l~~n~l~~i~-~~~f~~l~~L~~l~Ls~N~l~~ 105 (110)
.++.|++ ++|.+.... ...+. +.++|+.|++++|.++... +..+..+++|+.|++++|+++.
T Consensus 464 ~L~~L~L----~~n~l~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 464 NVRWMLL----GYVGESDEGLMEFSR--GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp TCCEEEE----CSCCSSHHHHHHHHT--CCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred cceEeec----cCCCCCHHHHHHHHh--cCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 5788888 888776421 22234 5788999999999876532 2223567899999999998764
No 155
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=92.08 E-value=0.022 Score=43.26 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=36.5
Q ss_pred eeeEEEEeeCCCCccCCCCCcC----ccCccCcccccEEeccCCCCcccCcc----cccCCcCCcEEeCCCCCCccc
Q psy17697 38 AARVLKLKIGEKSNNIPHLPAD----AFRSTGLVNLHNLLLKDCNITDIDPD----AFSGLGILIELDLTKNRIHTL 106 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~----~f~~~~~~~L~~l~l~~n~l~~i~~~----~f~~l~~L~~l~Ls~N~l~~l 106 (110)
.+++|++ ++|.+...... .+. ..++|+.|++++|.++.+... .+..+++|+.|++++|.+..+
T Consensus 165 ~L~~L~L----~~~~~~~~~~~~l~~~~~--~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l 235 (592)
T 3ogk_B 165 KIKTLLM----EESSFSEKDGKWLHELAQ--HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL 235 (592)
T ss_dssp TCSEEEC----TTCEEECCCSHHHHHHHH--HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG
T ss_pred CCCEEEC----ccccccCcchhHHHHHHh--cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH
Confidence 5666677 66665433211 122 356677777777777644322 234567777777777765543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=91.23 E-value=0.039 Score=36.39 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=7.2
Q ss_pred ccccEEeccCCCCcc
Q psy17697 67 VNLHNLLLKDCNITD 81 (110)
Q Consensus 67 ~~L~~l~l~~n~l~~ 81 (110)
+.|+.|++++|.|+.
T Consensus 93 ~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 93 NTLKSLNVESNFISG 107 (185)
T ss_dssp SSCCEEECCSSCCCH
T ss_pred CCcCEEECcCCcCCH
Confidence 345555555555443
No 157
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=90.88 E-value=0.025 Score=42.89 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=35.7
Q ss_pred eeeEEEEeeCCCCccCCCCCcCcc-CccCcccccEEeccCCCCcccCcc-cccCCcCCcEEeCCCCCC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAF-RSTGLVNLHNLLLKDCNITDIDPD-AFSGLGILIELDLTKNRI 103 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f-~~~~~~~L~~l~l~~n~l~~i~~~-~f~~l~~L~~l~Ls~N~l 103 (110)
.++.|++ ++|.+.......+ . ++++|+.|++++|.++..... ....+++|+.|++++|.+
T Consensus 457 ~L~~L~L----~~~~i~~~~~~~l~~--~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 457 KMEMLSV----AFAGDSDLGMHHVLS--GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp TCCEEEE----ESCCSSHHHHHHHHH--HCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred hccEeec----cCCCCcHHHHHHHHh--cCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 4667777 7766543222112 2 356778888888777443322 223467788888887776
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=89.47 E-value=0.049 Score=35.88 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=44.0
Q ss_pred eeeEEEEeeCCCCccCCCCC----cCccCccCcccccEEec--cCCCCcccCc----ccccCCcCCcEEeCCCCCCc
Q psy17697 38 AARVLKLKIGEKSNNIPHLP----ADAFRSTGLVNLHNLLL--KDCNITDIDP----DAFSGLGILIELDLTKNRIH 104 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~----~~~f~~~~~~~L~~l~l--~~n~l~~i~~----~~f~~l~~L~~l~Ls~N~l~ 104 (110)
.++.|++ ++|.|...- ...+. ....|+.|++ ++|.++.-.. ..+...+.|+.|++++|.+.
T Consensus 94 ~L~~L~L----~~N~i~~~g~~~l~~~L~--~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 94 TLKSLNV----ESNFISGSGILALVEALQ--SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SCCEEEC----CSSCCCHHHHHHHHHGGG--GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CcCEEEC----cCCcCCHHHHHHHHHHHH--hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 6888999 999887521 12233 3567999999 8899877432 23445688999999999875
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=87.35 E-value=0.29 Score=32.62 Aligned_cols=58 Identities=19% Similarity=0.314 Sum_probs=27.8
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCC-CcccCcccccCC----cCCcEEeCCCC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGL----GILIELDLTKN 101 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~-l~~i~~~~f~~l----~~L~~l~Ls~N 101 (110)
.++.+++ +++.++..--..+. +.++|+.|+++++. ++.---..+... ++|+.|+|+++
T Consensus 62 ~L~~LDL----s~~~Itd~GL~~L~--~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 62 KIQAIDA----TDSCIMSIGFDHME--GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CEEEEEE----ESCCCCGGGGGGGT--TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred eEeEEeC----cCCCccHHHHHHhc--CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence 4666666 66654432222233 45666666666652 433221222222 24566666554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=86.61 E-value=0.88 Score=30.21 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=31.2
Q ss_pred ccccEEeccCCCCcccCcccccCCcCCcEEeCCCCC-Cc
Q psy17697 67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR-IH 104 (110)
Q Consensus 67 ~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~-l~ 104 (110)
-.|+.++++++.|+..--..+.++++|+.|+|+++. |+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It 99 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE 99 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC
Confidence 459999999999877655667889999999999974 44
No 161
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=84.33 E-value=0.54 Score=35.46 Aligned_cols=59 Identities=14% Similarity=0.194 Sum_probs=27.6
Q ss_pred eeeEEEEeeCCCCccCCCCCcCccCcc--CcccccEEeccCCCCcccCcccc----cCCcCCcEEeCCCC
Q psy17697 38 AARVLKLKIGEKSNNIPHLPADAFRST--GLVNLHNLLLKDCNITDIDPDAF----SGLGILIELDLTKN 101 (110)
Q Consensus 38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~--~~~~L~~l~l~~n~l~~i~~~~f----~~l~~L~~l~Ls~N 101 (110)
.+++|++ ++|.+.......+..+ ..++|+.|+++++. ..+....+ ..+++|+.|++++|
T Consensus 157 ~L~~L~L----~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 157 NLKELDL----RESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TCCEEEC----TTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCEEeC----cCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 4555666 6555444332222100 23456666666654 22322222 22466666666665
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=78.28 E-value=0.91 Score=33.17 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=22.8
Q ss_pred cccccEEeccCCCCcccCcccc---cCCcCCcEEeCCCCCCcc
Q psy17697 66 LVNLHNLLLKDCNITDIDPDAF---SGLGILIELDLTKNRIHT 105 (110)
Q Consensus 66 ~~~L~~l~l~~n~l~~i~~~~f---~~l~~L~~l~Ls~N~l~~ 105 (110)
+++|+.|.+.+|.+..-....+ ..+++|+.|+|+.|.+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 4667777777776653211111 134567777777776653
No 163
>2ljs_A Trypsin inhibitor 3; beta strand, helix, cyclic backbone, hydrolase inhibitor; HET: PCA; NMR {Momordica cochinchinensis}
Probab=70.53 E-value=0.8 Score=21.26 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=18.2
Q ss_pred hhHHhhhcccccCCCCCCCccccc
Q psy17697 6 RCSDLLIDIDQLGLTVESCFNTWL 29 (110)
Q Consensus 6 ~~~~~~~~~~~~~~cp~~c~c~~~ 29 (110)
+|..++.......+||..|.|...
T Consensus 3 ~cprilkkckrdsdcpgecic~~~ 26 (30)
T 2ljs_A 3 ACPRILKKCRRDSDCPGECICKGN 26 (30)
T ss_dssp CCCCCCCBCSSGGGSSTTCCBCTT
T ss_pred ccHHHHHHhccccCCchhheeccC
Confidence 466667777778889999999653
No 164
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=70.35 E-value=1.7 Score=31.73 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=16.9
Q ss_pred ccccEEeccCCCCcccCcccc----cCCcCCcEEeCCCCCCc
Q psy17697 67 VNLHNLLLKDCNITDIDPDAF----SGLGILIELDLTKNRIH 104 (110)
Q Consensus 67 ~~L~~l~l~~n~l~~i~~~~f----~~l~~L~~l~Ls~N~l~ 104 (110)
++|+.|+++.|.++.....++ ..+++|+.|++++|.|+
T Consensus 279 ~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 445555555555444211111 12345555555555443
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=66.93 E-value=2.5 Score=28.44 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=6.7
Q ss_pred ccccEEeccCCCCc
Q psy17697 67 VNLHNLLLKDCNIT 80 (110)
Q Consensus 67 ~~L~~l~l~~n~l~ 80 (110)
..|+.|+|++|+|.
T Consensus 70 ~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 70 KHIEKFSLANTAIS 83 (197)
T ss_dssp SCCCEEECTTSCCB
T ss_pred CCcCEEEccCCCCC
Confidence 33445555555444
No 166
>1h9h_I EETI-II, trypsin inhibitor II; hydrolase inhibitor, complex (serine protease/inhibitor), squash inhibitor, cystine knot, hydrolase; 1.5A {Ecballium elaterium} SCOP: g.3.2.1 PDB: 1mcv_I
Probab=37.12 E-value=6 Score=19.20 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=16.5
Q ss_pred hHHhhhcccccCCCCCCCcccccC
Q psy17697 7 CSDLLIDIDQLGLTVESCFNTWLS 30 (110)
Q Consensus 7 ~~~~~~~~~~~~~cp~~c~c~~~~ 30 (110)
|..++.--....+|+..|.|...+
T Consensus 2 CPRILm~CK~DsDCl~~CvC~~~G 25 (36)
T 1h9h_I 2 CPRILIRCKQDSDCLAGCVCGPNG 25 (36)
T ss_dssp EECCCCBCSSGGGSCTTCEECTTS
T ss_pred CchhhcccccccCccccCeEccCC
Confidence 444555556677899999997643
No 167
>1lu0_A CMTI-I, trypsin inhibitor I; serine protease inhibitor, metal coordination, hydrolase INH; 1.03A {Cucurbita maxima} SCOP: g.3.2.1 PDB: 2v1v_A 1cti_A 1ppe_I 2cti_A 2sta_I 3cti_A 2btc_I 2stb_I 2eti_A 2it7_A
Probab=24.67 E-value=15 Score=17.02 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=15.4
Q ss_pred hHHhhhcccccCCCCCCCccccc
Q psy17697 7 CSDLLIDIDQLGLTVESCFNTWL 29 (110)
Q Consensus 7 ~~~~~~~~~~~~~cp~~c~c~~~ 29 (110)
|..++.--....+|+..|.|...
T Consensus 3 CPrIlm~CK~DsDCl~~C~C~~~ 25 (29)
T 1lu0_A 3 CPRILLECKKDSDCLAECVCLEH 25 (29)
T ss_dssp CCSCCCBCSSGGGSCTTCCBCTT
T ss_pred CchhhhhccccccccCCCEEccc
Confidence 44444555567789999988654
Done!