RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17697
(110 letters)
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 43.7 bits (104), Expect = 3e-07
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 68 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
NL +L L + +T I AF GL L LDL+ N + ++ P
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPE 42
Score = 38.3 bits (90), Expect = 3e-05
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
+N + +P AF+ GL NL L L N+T I P+AFSGL L LDL+ N +
Sbjct: 9 NNRLTVIPDGAFK--GLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 29.8 bits (68), Expect = 0.044
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 68 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
NL L L + ITD+ P S L L LDL+ N+I L P
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
>gnl|CDD|165857 PLN02213, PLN02213, sinapoylglucose-malate O-sinapoyltransferase/
carboxypeptidase.
Length = 319
Score = 28.1 bits (62), Expect = 0.96
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 56 LPADAFRSTGLVNLHNLLLKDCNITDI-DPDAF 87
L + + T +N+H++L DC++T++ PD +
Sbjct: 144 LTEEYHKCTAKINIHHILTPDCDVTNVTSPDCY 176
>gnl|CDD|178590 PLN03016, PLN03016, sinapoylglucose-malate O-sinapoyltransferase.
Length = 433
Score = 27.7 bits (61), Expect = 1.4
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 56 LPADAFRSTGLVNLHNLLLKDCNITDI-DPDAF 87
L + + T +N+H++L DC++T++ PD +
Sbjct: 258 LTEEYHKCTAKINIHHILTPDCDVTNVTSPDCY 290
>gnl|CDD|234080 TIGR02987, met_A_Alw26, type II restriction m6 adenine DNA
methyltransferase, Alw26I/Eco31I/Esp3I family. Members
of this family are the m6-adenine DNA methyltransferase
protein, or domain of a fusion protein that also carries
m5 cytosine methyltransferase activity, of type II
restriction systems of the Alw26I/Eco31I/Esp3I family. A
methyltransferase of this family is alway accompanied by
a type II restriction endonuclease from the
Alw26I/Eco31I/Esp3I family (TIGR02986) and by an
adenine-specific modification methyltransferase. Members
of this family are unusual in that regions of similarity
to homologs outside this family are circularly permuted
[DNA metabolism, Restriction/modification].
Length = 524
Score = 27.4 bits (61), Expect = 1.7
Identities = 14/44 (31%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
LVN K IDP G G LI L KN
Sbjct: 20 LVNEIGKNDKSTKTKIIDP--CCGDGRLIAALLKKNEEINYFKE 61
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 26.7 bits (59), Expect = 2.7
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 68 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
L +L L ++ P +FS + +L +LDL++N++
Sbjct: 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559
Score = 26.3 bits (58), Expect = 3.9
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 56 LPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
LP D+F S L NL L + P L L++L L++N++
Sbjct: 468 LP-DSFGSK---RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511
>gnl|CDD|182259 PRK10132, PRK10132, hypothetical protein; Provisional.
Length = 108
Score = 25.6 bits (56), Expect = 3.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 9 DLLIDIDQLGLTVESCFNTWLSVGKHHALAARV 41
D+ D++QL ++ES +W S K A AAR
Sbjct: 16 DIQNDVNQLADSLESVLKSWGSDAKGEAEAARR 48
>gnl|CDD|234012 TIGR02784, addA_alphas, double-strand break repair helicase AddA,
alphaproteobacterial type. AddAB, also called RexAB,
substitutes for RecBCD in several bacterial lineages.
These DNA recombination proteins act before synapse and
are particularly important for DNA repair of
double-stranded breaks by homologous recombination. The
term AddAB is used broadly, with AddA homologous
between the alphaproteobacteria (as modeled here) and
the Firmicutes, while the partner AddB proteins show no
strong homology across the two groups of species [DNA
metabolism, DNA replication, recombination, and
repair].
Length = 1135
Score = 26.2 bits (58), Expect = 4.2
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Query: 26 NTWLSV----GKHHALAARVLKL 44
+ W+S GK H L RV++L
Sbjct: 12 SAWVSANAGSGKTHVLTQRVIRL 34
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 25.6 bits (57), Expect = 6.8
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 9/35 (25%)
Query: 60 AFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILI 94
+ + L N + D DP+A +GL L+
Sbjct: 221 LWLTAALFNQ---------LVDEDPEALAGLRQLL 246
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 25.0 bits (55), Expect = 9.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 71 NLLLKDCNITDIDPDAFSGLGI 92
++L K +I D++P+ + LGI
Sbjct: 65 DILFKGESILDLEPEERAHLGI 86
>gnl|CDD|153083 cd00576, RNR_PFL, Ribonucleotide reductase and Pyruvate formate
lyase. Ribonucleotide reductase (RNR) and pyruvate
formate lyase (PFL) are believed to have diverged from a
common ancestor. They have a structurally similar
ten-stranded alpha-beta barrel domain that hosts the
active site, and are radical enzymes. RNRs are found in
all organisms and provide the only mechanism by which
nucleotides are converted to deoxynucleotides. RNRs are
separated into three classes based on their
metallocofactor usage. Class I RNRs use a diiron-tyrosyl
radical while Class II RNRs use coenzyme B12
(adenosylcobalamin, AdoCbl). Class III RNRs use an FeS
cluster and S-adenosylmethionine to generate a glycyl
radical. PFL, an essential enzyme in anaerobic bacteria,
catalyzes the conversion of pyruvate and CoA to
acteylCoA and formate in a mechanism that uses a glycyl
radical.
Length = 401
Score = 25.2 bits (55), Expect = 9.5
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 17 LGLTVESCFNTWLSVGKHH-----ALAARVLKLKIGEKSNNIPHLP--ADAFRSTGL--V 67
L +E N + V LA R L I IP + D R+ GL
Sbjct: 207 LARIMEKAINGSMDVVLEELEELAFLAVRALDCVIDSHDERIPTIELGGDERRTVGLGIA 266
Query: 68 NLHNLLLKDCNITDIDPDA 86
+ +LL+K DP+A
Sbjct: 267 GVADLLIKLGLEKVGDPEA 285
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.432
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,702,192
Number of extensions: 478430
Number of successful extensions: 361
Number of sequences better than 10.0: 1
Number of HSP's gapped: 357
Number of HSP's successfully gapped: 30
Length of query: 110
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 36
Effective length of database: 7,655,406
Effective search space: 275594616
Effective search space used: 275594616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (23.8 bits)