RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17697
(110 letters)
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 64.1 bits (156), Expect = 1e-13
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
NN+ L A+ + L NLH+LLL ++ I +AF + L LDL+ N +HTL
Sbjct: 48 HNNLSRLRAEWTPT-RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF 106
Score = 55.6 bits (134), Expect = 1e-10
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
SN++ L F L L LLL + +I +D +AF + L +L L++N+I
Sbjct: 97 SNHLHTLDEFLFS--DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154
Score = 55.6 bits (134), Expect = 1e-10
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N++ + ++AF + NL L L ++ +D FS L L L L N I +
Sbjct: 73 HNHLNFISSEAFV--PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN 130
Score = 50.6 bits (121), Expect = 7e-09
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSG---LGILIELDLTKNRIHTL 106
+N+I + +AF + L L L I+ + L L+ LDL+ N++ L
Sbjct: 121 NNHIVVVDRNAFE--DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
Query: 107 HPG 109
Sbjct: 179 PLT 181
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 62.5 bits (152), Expect = 5e-13
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N+ P + +F GL +L L + + ++ I+ +AF GL L+EL+L N + +L
Sbjct: 227 GNHFPEIRPGSFH--GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284
Score = 61.3 bits (149), Expect = 1e-12
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
NNI + AD FR L +L L L +I I+ AF+GL L L+L N + + G
Sbjct: 84 ENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSG 141
Score = 59.0 bits (143), Expect = 9e-12
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N+I + AF GL +L+ L L D +T I AF L L EL L N I ++
Sbjct: 108 RNSIRQIEVGAFN--GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY 165
Score = 55.5 bits (134), Expect = 1e-10
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGLGILIELDLTKNRIHTLH 107
+N I +P+ AF + +L L L + + I AF GL L L+L I +
Sbjct: 156 NNPIESIPSYAFN--RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212
Score = 54.8 bits (132), Expect = 3e-10
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK-NRIHTLHP 108
N + +P+ AF L L L L++ I I AF+ + L+ LDL + ++ +
Sbjct: 132 DNWLTVIPSGAFE--YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189
Query: 109 G 109
G
Sbjct: 190 G 190
Score = 50.5 bits (121), Expect = 9e-09
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
NI +P LV L L + + +I P +F GL L +L + +++ +
Sbjct: 205 MCNIKDMPNLT----PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260
Score = 47.8 bits (114), Expect = 8e-08
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ +P +T +NL NI I D F L L L L +N I + G
Sbjct: 63 RRGLSEVPQGIPSNTRYLNLME-----NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG 117
Score = 43.6 bits (103), Expect = 2e-06
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
++ + + +AF GL +L L L N++ + D F+ L L+EL L N +
Sbjct: 251 NSQVSLIERNAFD--GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 61.3 bits (148), Expect = 1e-12
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
++ HL R GL L NL + + + PDAF L L+L+ N + +L
Sbjct: 42 QHLQHLELRDLR--GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98
Score = 39.3 bits (91), Expect = 8e-05
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
+ + + DAF L L L + + GL L EL L+ N +H
Sbjct: 65 KSGLRFVAPDAFH--FTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116
Score = 25.5 bits (55), Expect = 4.1
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 3/36 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLH---NLLLKDCNITDI 82
N + L + L L N L C + +
Sbjct: 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWL 124
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 60.9 bits (148), Expect = 2e-12
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I + ++F+ L +L L L +I I+ AF+GL L L+L NR+ T+ G
Sbjct: 73 ENQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130
Score = 60.5 bits (147), Expect = 2e-12
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N++ + +F+ GL++L L + I I+ +AF L L+E++L N + L
Sbjct: 216 GNHLSAIRPGSFQ--GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273
Score = 59.4 bits (144), Expect = 6e-12
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N+I + AF GL NL+ L L D +T I AF L L EL L N I ++
Sbjct: 97 RNHIRTIEIGAFN--GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY 154
Score = 53.6 bits (129), Expect = 6e-10
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGLGILIELDLTKNRIHTLH 107
+N I +P+ AF + +L L L + ++ I AF GL L L+L + +
Sbjct: 145 NNPIESIPSYAFN--RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201
Score = 53.2 bits (128), Expect = 9e-10
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK-NRIHTLHP 108
N + +P AF L L L L++ I I AF+ + L LDL + R+ +
Sbjct: 121 DNRLTTIPNGAFV--YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178
Query: 109 G 109
G
Sbjct: 179 G 179
Score = 50.1 bits (120), Expect = 1e-08
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N+ +P L+ L L L +++ I P +F GL L +L + +++I +
Sbjct: 194 MCNLREIPNLT----PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN 249
Score = 47.1 bits (112), Expect = 1e-07
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N+ +P +T L L + I I ++F L L L L++N I T+ G
Sbjct: 52 RKNLREVPDGISTNT-----RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG 106
Score = 43.2 bits (102), Expect = 3e-06
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
+ I + +AF L +L + L N+T + D F+ L L + L N +
Sbjct: 240 QSQIQVIERNAFD--NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 58.6 bits (142), Expect = 1e-11
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N+ +P A R LV L L L I+ I+ L L E+ L ++ + P
Sbjct: 233 HCNLTAVPYLAVR--HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290
Score = 58.6 bits (142), Expect = 1e-11
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
SN + +P F GL NL L + + I + F L L L++ N + +
Sbjct: 89 SNRLKLIPLGVFT--GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146
Score = 58.2 bits (141), Expect = 2e-11
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I + L+ L + L + ++P AF GL L L+++ N++ TL
Sbjct: 257 YNPISTIEGSMLH--ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314
Score = 57.8 bits (140), Expect = 3e-11
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N++ ++ AF GL +L L L+ CN+T I +A S L LI L L I+ +
Sbjct: 137 DNDLVYISHRAFS--GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194
Score = 57.0 bits (138), Expect = 5e-11
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I L D F +L L L + ++ ++P AF+ L L L L NR+ + G
Sbjct: 41 KNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98
Score = 54.0 bits (130), Expect = 5e-10
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + + AF L NL L L+ + I F+GL L +LD+++N+I L
Sbjct: 65 ENIVSAVEPGAFN--NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY 122
Score = 54.0 bits (130), Expect = 6e-10
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I L F+ L NL +L + D ++ I AFSGL L +L L K + ++
Sbjct: 113 ENKIVILLDYMFQ--DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170
Score = 51.6 bits (124), Expect = 3e-09
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ + + +NL +L + CN+T + A L L L+L+ N I T+
Sbjct: 211 PYLDTMTPNCLY---GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266
Score = 48.6 bits (116), Expect = 4e-08
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N+ +P +A L L L L+ NI I +F L L L+++
Sbjct: 161 KCNLTSIPTEALS--HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218
Score = 47.4 bits (113), Expect = 1e-07
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
+ + AFR GL L L + +T ++ F +G L L L N +
Sbjct: 281 GGQLAVVEPYAFR--GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
Score = 47.0 bits (112), Expect = 1e-07
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITD-IDPDAFSGLGILIELDLTKNRIHTLHP 108
NI + +F+ L L L + D + P+ GL L L +T + +
Sbjct: 185 HLNINAIRDYSFK--RLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPY 241
Query: 109 G 109
Sbjct: 242 L 242
Score = 45.1 bits (107), Expect = 7e-07
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+P T L L I ++ D F+ L EL+L +N + + PG
Sbjct: 20 RKRFVAVPEGIPTET-----RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG 74
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 57.4 bits (139), Expect = 3e-11
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+N I ++ + VNL L+L I I+ D+FS LG L LDL+ N + L
Sbjct: 61 NNRITYISNSDLQ--RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS 118
Score = 50.9 bits (122), Expect = 6e-09
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
SN I + D+F L +L +L L ++++ F L L L+L N TL
Sbjct: 85 SNGINTIEEDSFS--SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET 142
Score = 48.6 bits (116), Expect = 4e-08
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 53 IPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ F GL L L + ++ +P + + + L L + L
Sbjct: 162 FTKIQRKDF--AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216
Score = 44.7 bits (106), Expect = 9e-07
Identities = 7/58 (12%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107
++++ + + N+ +L+L + + L+L + T H
Sbjct: 183 ASDLQSYEPKSL--KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238
Score = 42.0 bits (99), Expect = 8e-06
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ +L L + IT I L L LT N I+T+
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94
Score = 38.9 bits (91), Expect = 8e-05
Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 50 SNNIPHLPADAFRS-TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ + L S N+ + D ++ + + + L+EL+ ++N++ ++
Sbjct: 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSVPD 294
Query: 109 G 109
G
Sbjct: 295 G 295
Score = 37.8 bits (88), Expect = 2e-04
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 28/86 (32%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITD--------------------------ID 83
N + +L + F L +L L L I
Sbjct: 109 YNYLSNLSSSWF--KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166
Query: 84 PDAFSGLGILIELDLTKNRIHTLHPG 109
F+GL L EL++ + + + P
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPK 192
Score = 35.5 bits (82), Expect = 0.002
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 101
++ + + L L + + F L L ++ L N
Sbjct: 263 DESLFQVMKLLN---QISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Score = 33.9 bits (78), Expect = 0.006
Identities = 5/68 (7%), Positives = 17/68 (25%), Gaps = 10/68 (14%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKD--------CNITDIDPDAFSGLGILIELDLTKN 101
L ++ L L+D ++ + ++ + +T
Sbjct: 207 MKQHILLLEIFVD--VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264
Query: 102 RIHTLHPG 109
+ +
Sbjct: 265 SLFQVMKL 272
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 56.9 bits (138), Expect = 4e-11
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I +P AFR GL +L LLL + + P AF LG L+ L L N + L
Sbjct: 162 GNRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219
Score = 56.5 bits (137), Expect = 5e-11
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + LP D FR L NL +L L I+ + AF GL L L L +NR+ +HP
Sbjct: 138 DNALQALPDDTFR--DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195
Score = 55.4 bits (134), Expect = 1e-10
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN-RIHTLHP 108
N I H+PA +FR NL L L + ID AF+GL +L +LDL+ N ++ ++ P
Sbjct: 41 GNRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 109 G 109
Sbjct: 99 A 99
Score = 55.4 bits (134), Expect = 1e-10
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ L FR GL L L L+D + + D F LG L L L NRI ++
Sbjct: 114 RCGLQELGPGLFR--GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171
Score = 54.6 bits (132), Expect = 3e-10
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ + F GL LH L L C + ++ P F GL L L L N + L
Sbjct: 91 AQLRSVDPATFH--GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147
Score = 43.4 bits (103), Expect = 2e-06
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 101
N + H+ AFR L L L L N++ + +A + L L L L N
Sbjct: 186 QNRVAHVHPHAFR--DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 43.1 bits (102), Expect = 3e-06
Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ +P ++ + L I+ + +F L L L N + +
Sbjct: 20 QQGLQAVPVGIPAAS-----QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 56.6 bits (137), Expect = 5e-11
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+N+I L D F+ GL +L+ L+L + I+ I AFS L L +L ++KN + + P
Sbjct: 63 NNDISELRKDDFK--GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN 120
Score = 52.3 bits (126), Expect = 2e-09
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I + + L+ L L I I+ + S L L EL L N++ + G
Sbjct: 202 HNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG 259
Score = 49.6 bits (119), Expect = 1e-08
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 9/84 (10%)
Query: 26 NTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPD 85
N+ G L L++ + +P D L+ L L I I+ +
Sbjct: 161 NSGFEPGAFDGLKLNYLRIS----EAKLTGIPKDLPE-----TLNELHLDHNKIQAIELE 211
Query: 86 AFSGLGILIELDLTKNRIHTLHPG 109
L L L N+I + G
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENG 235
Score = 45.4 bits (108), Expect = 5e-07
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+N I + AF L L L + ++ +I P+ S L EL + NRI + G
Sbjct: 87 NNKISKIHEKAFS--PLRKLQKLYISKNHLVEIPPNLPSSLV---ELRIHDNRIRKVPKG 141
Score = 44.6 bits (106), Expect = 8e-07
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I + + L L L L + ++ + P L +L + L N I +
Sbjct: 226 HNQIRMIENGSLS--FLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVN 282
Score = 44.2 bits (105), Expect = 1e-06
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
N++ +P + +L L + D I + FSGL + +++ N +
Sbjct: 111 KNHLVEIPPNLPS-----SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160
Score = 43.9 bits (104), Expect = 2e-06
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 68 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ L L++ +I+++ D F GL L L L N+I +H
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK 96
Score = 36.9 bits (86), Expect = 5e-04
Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 50 SNNIPHLPADAFRSTG----LVNLHNLLLKDCNIT--DIDPDAFSGLGILIELDLTKNR 102
+NNI + + F G + + L + + ++ P F + + + +
Sbjct: 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
Score = 35.4 bits (82), Expect = 0.002
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 11/68 (16%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI------LIELDLTKNRI 103
+N + +PA L L + L NIT + + F +G + L N +
Sbjct: 250 NNKLSRVPAGLP---DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306
Query: 104 --HTLHPG 109
+ P
Sbjct: 307 PYWEVQPA 314
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 56.2 bits (136), Expect = 6e-11
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ L AF L +L L + N +D + L L LD + N I T
Sbjct: 184 QCQLEQLSPTAFN--SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241
Score = 52.7 bits (127), Expect = 1e-09
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ + D F L NL L L C + + P AF+ L L L+++ N +L
Sbjct: 161 SFQENFLPDIFT--ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217
Score = 45.4 bits (108), Expect = 4e-07
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNIT--DIDPDAFSGLGILIELDLTKNRIHTL 106
+SN + LP F L L L L ++ + G L LDL+ N + T+
Sbjct: 36 ESNKLQSLPHGVFD--KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 93
Query: 107 HPG 109
Sbjct: 94 SSN 96
Score = 43.8 bits (104), Expect = 2e-06
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 50 SNNIPHLPA-DAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR-IHTLH 107
+N+ + F L NL L + + F+GL L L + N
Sbjct: 110 HSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167
Query: 108 PG 109
P
Sbjct: 168 PD 169
Score = 43.8 bits (104), Expect = 2e-06
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
SN + + G +L L L + + F GL L LD + + +
Sbjct: 61 SNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSE 118
Score = 40.4 bits (95), Expect = 3e-05
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI-LIELDLTKNRIH 104
NN L ++ L +L L +I L L+LT+N
Sbjct: 208 HNNFFSLDTFPYK--CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 40.0 bits (94), Expect = 4e-05
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
S + +P + L L+ + + F L L +L L+ N +
Sbjct: 16 SKGLTSVPTGIP-----SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 56.2 bits (136), Expect = 7e-11
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+N I + F+ L NLH L+L + I+ I P AF+ L L L L+KN++ L
Sbjct: 61 NNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK 118
Score = 52.7 bits (127), Expect = 1e-09
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I + A + + GL NL L L +I+ +D + + L EL L N++ + G
Sbjct: 201 GNKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258
Score = 51.5 bits (124), Expect = 3e-09
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
NI +P +L L L IT +D + GL L +L L+ N I + G
Sbjct: 180 DTNITTIPQGLPP-----SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234
Score = 47.7 bits (114), Expect = 7e-08
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITD--IDPDAFSGLGILIELDLTKNRIHTLH 107
N I + F GL + + L + I+ AF G+ L + + I T+
Sbjct: 130 ENEITKVRKSVF--NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187
Query: 108 PG 109
G
Sbjct: 188 QG 189
Score = 46.5 bits (111), Expect = 2e-07
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107
N + LP + L L + + IT + F+GL +I ++L N + +
Sbjct: 109 KNQLKELPEKMPK-----TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161
Score = 45.4 bits (108), Expect = 5e-07
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N+I + + +L L L + + + P + + + L N I +
Sbjct: 225 FNSISAVDNGSLA--NTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSN 281
Score = 45.0 bits (107), Expect = 7e-07
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 50 SNNI--PHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107
+N + + AF+ G+ L + + D NIT I L EL L N+I +
Sbjct: 154 TNPLKSSGIENGAFQ--GMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVD 208
Query: 108 PG 109
Sbjct: 209 AA 210
Score = 44.6 bits (106), Expect = 9e-07
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+N I + AF LV L L L + ++ L EL + +N I +
Sbjct: 85 NNKISKISPGAFA--PLVKLERLYLSKNQLKELPEKMPKTLQ---ELRVHENEITKVRKS 139
Score = 44.2 bits (105), Expect = 1e-06
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ +P D T L L++ IT+I F L L L L N+I + PG
Sbjct: 40 DLGLEKVPKDLPPDT-----ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 94
Score = 38.1 bits (89), Expect = 2e-04
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 50 SNNIPHLPADAFRS----TGLVNLHNLLLKDCNI--TDIDPDAFSGLGILIELDLTKNR 102
+NNI + ++ F T + + L + +I P F + + + L +
Sbjct: 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
Score = 31.1 bits (71), Expect = 0.048
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 11/68 (16%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAF------SGLGILIELDLTKNRI 103
+N + +P + + L + NI+ I + F + + L N +
Sbjct: 249 NNKLVKVPGGLA---DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305
Query: 104 HT--LHPG 109
+ P
Sbjct: 306 QYWEIQPS 313
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 54.2 bits (131), Expect = 3e-10
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + HL + +F L L L C I I+ A+ L L L LT N I +L G
Sbjct: 37 FNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94
Score = 49.2 bits (118), Expect = 2e-08
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N I L AF +GL +L L+ + N+ ++ L L EL++ N I +
Sbjct: 85 GNPIQSLALGAF--SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139
Score = 48.0 bits (115), Expect = 5e-08
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
I + A+ L +L L+L I + AFSGL L +L + + +L
Sbjct: 61 RCEIQTIEDGAY--QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Score = 44.2 bits (105), Expect = 1e-06
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 50 SNNIPHLP-ADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGIL----IELDLTKNRIH 104
N I + F + L NL +L L I I L + + LDL+ N ++
Sbjct: 133 HNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190
Query: 105 TLHPG 109
+ PG
Sbjct: 191 FIQPG 195
Score = 38.8 bits (91), Expect = 8e-05
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 50 SNNIPHLPADAFRSTGLVNL----HNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 105
SN I + R L + +L L + I P AF + L EL L N++ +
Sbjct: 158 SNKIQSIYCTDLR--VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKS 214
Query: 106 LHPG 109
+ G
Sbjct: 215 VPDG 218
Score = 38.8 bits (91), Expect = 9e-05
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 101
N + + AF+ L L L + + F L L ++ L N
Sbjct: 186 LNPMNFIQPGAFKEI---RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 38.8 bits (91), Expect = 1e-04
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ NL L + + +F L LDL++ I T+ G
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 53.9 bits (130), Expect = 6e-10
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N +P + F L+NL L L C I I D F L L LT N + +
Sbjct: 42 FNVLPTIQNTTFS--RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET 99
Score = 48.9 bits (117), Expect = 3e-08
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+N + + A G L +L I+ ID L L L N I ++
Sbjct: 90 ANPLIFMAETALS--GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147
Score = 47.7 bits (114), Expect = 8e-08
Identities = 12/60 (20%), Positives = 23/60 (38%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ + F +++ ++ L+ +I + F L ELDLT + L G
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG 296
Score = 47.3 bits (113), Expect = 1e-07
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
I + D F+ L L+L + + A SG L L + I ++
Sbjct: 66 RCQIYWIHEDTFQ--SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123
Score = 46.9 bits (112), Expect = 1e-07
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 50 SNNIPHLPADAFRS-TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N+ P S L L L+L C+++ ID AF+ L ++ +DL+ NR+ +
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517
Query: 109 G 109
Sbjct: 518 E 518
Score = 46.5 bits (111), Expect = 2e-07
Identities = 13/60 (21%), Positives = 17/60 (28%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
I + L +L L +I+ I L LD N IH L
Sbjct: 114 QTGISSIDFIPLH--NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171
Score = 46.2 bits (110), Expect = 3e-07
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ ++ ++ F L L L +++++ P GL L +L L+ N+ L
Sbjct: 264 HYFFNISSNTFH--CFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFENLCQI 319
Score = 46.2 bits (110), Expect = 3e-07
Identities = 12/59 (20%), Positives = 20/59 (33%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
++I + L +L +L L + +AF L LDL R+
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417
Score = 45.0 bits (107), Expect = 8e-07
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
++ + AF L ++++ L +T +A S L + L+L N I + P
Sbjct: 485 FCDLSSIDQHAFT--SLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPS 541
Score = 44.2 bits (105), Expect = 1e-06
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNI-TDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+N +L + +L +L +K ++ L L ELDL+ + I T
Sbjct: 310 ANKFENLCQISAS--NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367
Query: 109 GK 110
Sbjct: 368 CN 369
Score = 44.2 bits (105), Expect = 2e-06
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGIL--IELDLTKNRIHTLH 107
SN+I + L L ++ I + + S L + L+L N I +
Sbjct: 138 SNHISSIKLPKGF--PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195
Query: 108 PG 109
PG
Sbjct: 196 PG 197
Score = 43.5 bits (103), Expect = 3e-06
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPD-AFSGLGILIELDLTKNRIHTLHP 108
N L +AF+ L L L + D F L +L L+L+ + +
Sbjct: 385 YNEPLSLKTEAFK--ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442
Query: 109 G 109
Sbjct: 443 Q 443
Score = 43.5 bits (103), Expect = 3e-06
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ + +P + L + I FS L L LDLT+ +I+ +H
Sbjct: 21 NLGLNEIPGTLPN-----STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75
Score = 43.1 bits (102), Expect = 4e-06
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ ++ LP+ GL L L+L ++ + S L L + N
Sbjct: 287 ATHLSELPSGLV---GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342
Score = 42.3 bits (100), Expect = 5e-06
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI--LIELDLTKNRIHTLH 107
+ +++ + +L +D + DI P F GL + ++L K+ +
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270
Query: 108 PG 109
Sbjct: 271 SN 272
Score = 41.2 bits (97), Expect = 2e-05
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ A + L L L L + F GL L L+L N +
Sbjct: 409 FTRLKVKDAQSP-FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466
Score = 35.8 bits (83), Expect = 0.001
Identities = 14/61 (22%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDID--PDAFSGLGILIELDLTKNRIHTLHP 108
L L NL L L +I D L L L+L+ N +L
Sbjct: 336 TKRLELGTGCLE--NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393
Query: 109 G 109
Sbjct: 394 E 394
Score = 35.4 bits (82), Expect = 0.002
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
N + +A L ++ L L +I+ I P L ++L +N +
Sbjct: 509 HNRLTSSSIEALS--HLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLD 560
Score = 32.3 bits (74), Expect = 0.020
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+N I +L + S +L L +I I+P AF L+ + +
Sbjct: 162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ-SLNFGGTQNLLVIF 219
Score = 29.6 bits (67), Expect = 0.16
Identities = 9/62 (14%), Positives = 14/62 (22%), Gaps = 5/62 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI--LIELDLTKNRIHTLH 107
N+I + AF S +L + I L +
Sbjct: 188 GNDIAGIEPGAFDSA---VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244
Query: 108 PG 109
P
Sbjct: 245 PA 246
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 53.6 bits (129), Expect = 6e-10
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + HL + +F L L L C I I+ A+ L L L LT N I +L G
Sbjct: 37 FNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94
Score = 49.3 bits (118), Expect = 2e-08
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I L AF GL +L L+ + N+ ++ L L EL++ N I +
Sbjct: 85 GNPIQSLALGAFS--GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 110 K 110
+
Sbjct: 143 E 143
Score = 49.3 bits (118), Expect = 3e-08
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
I + A++ L +L L+L I + AFSGL L +L + + +L
Sbjct: 61 RCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Score = 43.9 bits (104), Expect = 2e-06
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 50 SNNI-PHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N+ + D F L NL L L C + + P AF+ L L L++ N++ ++
Sbjct: 454 GNSFQENFLPDIFT--ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511
Query: 109 G 109
G
Sbjct: 512 G 512
Score = 43.2 bits (102), Expect = 3e-06
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITD-IDPDAFSGLGILIELDLTKNRIHTLHP 108
+ F GL +L L + + + PD F+ L L LDL++ ++ L P
Sbjct: 430 HTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Query: 109 G 109
Sbjct: 488 T 488
Score = 42.8 bits (101), Expect = 4e-06
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
+ L AF L +L L + + + F L L ++ L N
Sbjct: 479 QCQLEQLSPTAFN--SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Score = 41.2 bits (97), Expect = 1e-05
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDID-PDAFSGLGILIELDLTKNRIHTLHP 108
N+ L L L L + I P+ FS L L LDL+ N+I +++
Sbjct: 109 ETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166
Query: 109 G 109
Sbjct: 167 T 167
Score = 40.5 bits (95), Expect = 3e-05
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N +P + ST NL L + + +F L LDL++ I T+ G
Sbjct: 16 ELNFYKIPDNLPFST-----KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Score = 40.1 bits (94), Expect = 4e-05
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHTLHP 108
N + + ++ GL L +L + N+ + F L LI LD++
Sbjct: 382 FNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 109 G 109
G
Sbjct: 439 G 439
Score = 38.2 bits (89), Expect = 2e-04
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
+N+ + + L NL L + + F+GL L L + N
Sbjct: 405 HSNLKQMSEFSV-FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Score = 36.6 bits (85), Expect = 6e-04
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + + G +L L L + + F GL L LD + + +
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEF 414
Score = 36.2 bits (84), Expect = 7e-04
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGIL----IELDLTKNRIHT 105
N I + S L NL +L L I I L + + LDL+ N ++
Sbjct: 133 HNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
Query: 106 LHPG 109
+ PG
Sbjct: 192 IQPG 195
Score = 32.4 bits (74), Expect = 0.021
Identities = 11/69 (15%), Positives = 18/69 (26%), Gaps = 1/69 (1%)
Query: 42 LKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDID-PDAFSGLGILIELDLTK 100
L L N+ A + + L + D D F+ L + L
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291
Query: 101 NRIHTLHPG 109
I +
Sbjct: 292 VTIERVKDF 300
Score = 31.6 bits (72), Expect = 0.031
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLL----LKDCNITDIDPDAFSGLGILIELDLTKNRIHT 105
SN I + R L + L L + I P AF + L +L L N
Sbjct: 158 SNKIQSIYCTDLR--VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL 214
Score = 31.6 bits (72), Expect = 0.039
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDID--PDAFSGLGILIELDLTKNRIHTLH 107
SN + ++ L +L L L ++ + G L LDL+ N + T+
Sbjct: 334 SNKGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389
Query: 108 PG 109
Sbjct: 390 SN 391
Score = 29.3 bits (66), Expect = 0.25
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNIT-DIDPDAFSGLGILIELDLTKNRIH 104
N + + AF+ LH L L++ + ++ GL L L
Sbjct: 186 LNPMNFIQPGAFKEI---RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238
Score = 27.8 bits (62), Expect = 0.72
Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 7/60 (11%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
S I + ++ +L L +C L L L T N+
Sbjct: 291 SVTIERVKDFSYNF----GWQHLELVNCKFGQFP---TLKLKSLKRLTFTSNKGGNAFSE 343
Score = 25.4 bits (56), Expect = 5.3
Identities = 14/72 (19%), Positives = 20/72 (27%), Gaps = 6/72 (8%)
Query: 42 LKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLK------DCNITDIDPDAFSGLGILIE 95
++L NN L GL L L + N+ D A GL L
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259
Query: 96 LDLTKNRIHTLH 107
+ +
Sbjct: 260 EEFRLAYLDYYL 271
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 53.6 bits (129), Expect = 8e-10
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I ++ R NL L+LK I I+ DAF LG L LDL+ N + +L
Sbjct: 35 FNKITYIGHGDLR--ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92
Score = 47.8 bits (114), Expect = 7e-08
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
S+ I + DAF L +L +L L D +++ + F L L L+L N TL
Sbjct: 59 SSRINTIEGDAFY--SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116
Query: 110 K 110
Sbjct: 117 S 117
Score = 43.6 bits (103), Expect = 2e-06
Identities = 11/84 (13%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 25 FNTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP 84
+ +GK + R L + + + + + L + + +++ + +
Sbjct: 274 SDVVSELGKVETVTIRRLHIP----QFYLFYDLSTVYS--LLEKVKRITVENSKVFLVPC 327
Query: 85 DAFSGLGILIELDLTKNRIHTLHP 108
L L LDL++N + +
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYL 351
Score = 43.2 bits (102), Expect = 3e-06
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
S + +P+ + +L L IT I L L L +RI+T+
Sbjct: 14 SRSFTSIPSGLTA-----AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68
Score = 42.8 bits (101), Expect = 5e-06
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ F GL +L+ L +K ++ + + + + L L + L
Sbjct: 134 ETFSEIRRIDFA--GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190
Score = 41.6 bits (98), Expect = 1e-05
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N L + L NL L + + ++I F+GL L EL++ +
Sbjct: 107 GNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165
Query: 109 G 109
Sbjct: 166 Q 166
Score = 38.9 bits (91), Expect = 9e-05
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
N + LP + L + + + + F L L ++ L N
Sbjct: 460 RNKLKTLPDASL----FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
Score = 38.6 bits (90), Expect = 1e-04
Identities = 7/60 (11%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ ++ + + + +S + ++H+L L + L + L+L +
Sbjct: 157 ALSLRNYQSQSLKS--IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS 214
Score = 38.6 bits (90), Expect = 1e-04
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N++ + L NL +L + + PD+ + L+L+ I +
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTC 428
Score = 37.8 bits (88), Expect = 3e-04
Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDI---DPDAFSGLGILIELDLTKNRIHTL 106
++ + +P + L +L L L + + + + L L L++N + ++
Sbjct: 319 NSKVFLVPCSFSQ--HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376
Score = 37.4 bits (87), Expect = 3e-04
Identities = 8/75 (10%), Positives = 25/75 (33%), Gaps = 17/75 (22%)
Query: 50 SNNIPHLPADAFRS---------------TGLVNLHNLLLKDCNITDIDPDAFSGLGILI 94
S I + ++ L L L + + + + +L+
Sbjct: 419 STGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASL--FPVLL 476
Query: 95 ELDLTKNRIHTLHPG 109
+ +++N++ ++ G
Sbjct: 477 VMKISRNQLKSVPDG 491
Score = 37.0 bits (86), Expect = 5e-04
Identities = 4/44 (9%), Positives = 15/44 (34%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
V + L + + +S L + + + +++ +
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328
Score = 34.3 bits (79), Expect = 0.003
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 51 NNIPHLPADAFRSTG-LVNLHNLLLKDCNITDID--PDAFSGLGILIELDLTKNRIHTLH 107
N + G +L L+L ++ + + L L LD+++N H +
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403
Query: 108 PG 109
Sbjct: 404 DS 405
Score = 34.3 bits (79), Expect = 0.004
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 4/62 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDI-DPDAFSGLGILIELDLT-KNRIHTLH 107
N++ L + F L +L L L + F L L L + +
Sbjct: 83 DNHLSSLSSSWFG--PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140
Query: 108 PG 109
Sbjct: 141 RI 142
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 53.5 bits (129), Expect = 8e-10
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + L + +F L L L C I I+ A+ GL L L LT N I + PG
Sbjct: 41 FNPLKILKSYSFS--NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98
Score = 49.6 bits (119), Expect = 2e-08
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
I + A+ GL +L NL+L I P +FSGL L L + ++ +L
Sbjct: 65 RCEIETIEDKAWH--GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF 122
Score = 49.3 bits (118), Expect = 3e-08
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I +F GL +L NL+ + + ++ L L +L++ N IH+
Sbjct: 89 GNPIQSFSPGSFS--GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146
Query: 110 K 110
Sbjct: 147 A 147
Score = 46.9 bits (112), Expect = 1e-07
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ + F L L L + N+ +D ++ L L LD + NRI T
Sbjct: 482 KCQLEQISWGVFD--TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539
Score = 46.2 bits (110), Expect = 3e-07
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 40 RVLKLKIGEKSNN--IPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELD 97
LK+ + N + ++ F NL L L C + I F L L L+
Sbjct: 451 NTLKM-----AGNSFKDNTLSNVFA--NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503
Query: 98 LTKNRIHTLHPG 109
++ N + L
Sbjct: 504 MSHNNLLFLDSS 515
Score = 43.1 bits (102), Expect = 4e-06
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ +P D + N+ L + + +FS L LDL++ I T+
Sbjct: 20 DQKLSKVPDDIPS-----STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74
Score = 42.7 bits (101), Expect = 4e-06
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N + ++ G +L +L L + F GL L LD + + +
Sbjct: 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTE 416
Score = 40.8 bits (96), Expect = 2e-05
Identities = 10/59 (16%), Positives = 14/59 (23%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N+ V + L N D F L + + L I L
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV 303
Score = 39.2 bits (92), Expect = 7e-05
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
NN+ L + + L +L L I L +LT N +
Sbjct: 506 HNNLLFLDSSHYN--QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
Score = 39.2 bits (92), Expect = 9e-05
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG----ILIELDLTKNRIHT 105
N I A+ S L NL ++ L I I + L + + LD++ N I
Sbjct: 137 HNFIHSCKLPAYFS-NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195
Query: 106 LHPG 109
+
Sbjct: 196 IQDQ 199
Score = 38.1 bits (89), Expect = 2e-04
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHTLHP 108
S N + + F GL L +L + + + AF L L+ LD++
Sbjct: 384 SFNGAIIMSANFM--GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441
Query: 109 G 109
G
Sbjct: 442 G 442
Score = 36.9 bits (86), Expect = 5e-04
Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 3/60 (5%)
Query: 50 SNNIPHLPA-DAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ + + AF L L L + N F GL L L + N
Sbjct: 408 HSTLKRVTEFSAFL--SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465
Score = 33.9 bits (78), Expect = 0.005
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 59 DAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI--LIELDLTKNRIHTL 106
+F+ L +L L L ++ ++S LG L LDL+ N +
Sbjct: 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM 391
Score = 33.5 bits (77), Expect = 0.008
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 7/60 (11%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ P + L L +L L + L L LDL++N +
Sbjct: 316 RCQLKQFP-----TLDLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCC 368
Score = 32.3 bits (74), Expect = 0.017
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 50 SNNIPHLPADAFR--STGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 105
N I + + + +L + I I AF G+ L EL L N +
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSS 218
Score = 31.9 bits (73), Expect = 0.028
Identities = 10/59 (16%), Positives = 16/59 (27%), Gaps = 7/59 (11%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+I +L +L + C + L L L LT N+
Sbjct: 294 GVSIKYLEDVPKHF----KWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSISFK 345
Score = 31.2 bits (71), Expect = 0.050
Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 4/60 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N F L N+ + L +I ++ L + + ++
Sbjct: 270 YTNDFSDDIVKFH--CLANVSAMSLAGVSIKYLEDVPKHFK--WQSLSIIRCQLKQFPTL 325
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 53.1 bits (128), Expect = 1e-09
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + LPA F L +L + I+ ++P+ L +L L+L N + L
Sbjct: 34 HNQLRRLPAANFT--RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK 91
Score = 51.5 bits (124), Expect = 3e-09
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + L F NL L L +I I + F LI LDL+ N + + G
Sbjct: 82 HNELSQLSDKTFA--FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139
Score = 50.4 bits (121), Expect = 1e-08
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I L + + L L L L+ ++ + F+ L EL L N I +
Sbjct: 58 FNTISKLEPELCQ--KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115
Score = 50.0 bits (120), Expect = 1e-08
Identities = 14/60 (23%), Positives = 21/60 (35%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
++ + F NL L L N+ + D+F+ L L L N I L
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290
Score = 47.7 bits (114), Expect = 9e-08
Identities = 22/59 (37%), Positives = 27/59 (45%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
++ L + F S LH L L I+ I+ DAFS LG L LDL N I G
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423
Score = 46.9 bits (112), Expect = 2e-07
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
SN+I + + F NL L L ++ L L EL L+ N+I L
Sbjct: 106 SNSIQKIKNNPFV--KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163
Score = 46.1 bits (110), Expect = 3e-07
Identities = 13/59 (22%), Positives = 21/59 (35%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+N I L ++ +L L L I + P F +G L L L ++
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212
Score = 45.8 bits (109), Expect = 4e-07
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
SN +P + F+ L L + L N+ + F+ L L+L KN I ++
Sbjct: 545 SNGFDEIPVEVFK--DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602
Score = 45.0 bits (107), Expect = 7e-07
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ ++ + L NL L L + NI +I+ D GL L LDL N + L
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522
Score = 45.0 bits (107), Expect = 7e-07
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI--LIELDLTKNRIHTLH 107
N + L NL LLL + I + + L +L+L+ N+I
Sbjct: 130 HNGLSSTKLGTQV--QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 187
Query: 108 PG 109
PG
Sbjct: 188 PG 189
Score = 44.6 bits (106), Expect = 1e-06
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ +P D N+ L L + + F+ L LD+ N I L P
Sbjct: 13 HLKLTQVPDDLPT-----NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67
Score = 44.2 bits (105), Expect = 1e-06
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 50 SNNI-PHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI--LIELDLTKNRIHTL 106
+ + P L ++ NL L + ++ F GL L LDL+ N ++ +
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263
Query: 107 HPG 109
Sbjct: 264 GND 266
Score = 43.1 bits (102), Expect = 3e-06
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 50 SNNIPHLPADAFRS------TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
NN+ L A GL +LH L L+ +I + F L L +DL N +
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572
Query: 104 HTLHPG 109
+TL
Sbjct: 573 NTLPAS 578
Score = 41.5 bits (98), Expect = 1e-05
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 7/67 (10%)
Query: 50 SNNIPHLPADAFRSTG-------LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 102
NNI HL + + + + ++ ID +F L L L++ N
Sbjct: 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340
Query: 103 IHTLHPG 109
I +
Sbjct: 341 IPGIKSN 347
Score = 41.5 bits (98), Expect = 1e-05
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNIT-DIDPDAFSGLGILIELDLTKNRIHTLHP 108
N I + +DAF L +L L L I ++ + GL + E+ L+ N+ L
Sbjct: 390 KNKISKIESDAFS--WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447
Query: 109 G 109
Sbjct: 448 N 448
Score = 41.5 bits (98), Expect = 1e-05
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
NN+ + D+F L L L+ NI + + GL + L+L ++
Sbjct: 257 YNNLNVVGNDSFA--WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309
Score = 41.1 bits (97), Expect = 2e-05
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
++P + +F+ L L +L ++D +I I + F+GL L L L+ +
Sbjct: 315 ASLPKIDDFSFQ--WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365
Score = 39.6 bits (93), Expect = 5e-05
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 50 SNNI-PHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107
N I L +R GL N+ + L + ++F+ + L L L + + +
Sbjct: 414 LNEIGQELTGQEWR--GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470
Score = 38.1 bits (89), Expect = 2e-04
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDA--------FSGLGILIELDLTKN 101
+NNI ++ D GL L L L+ N+ + A GL L L+L N
Sbjct: 489 NNNIANINDDML--EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546
Query: 102 RIHTLHPG 109
+
Sbjct: 547 GFDEIPVE 554
Score = 35.7 bits (83), Expect = 0.001
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS---GLGILIELDLTKNRIHTL 106
SN I F + L L L + + + + L L+ +++ T
Sbjct: 180 SNQIKEFSPGCFH--AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237
Query: 107 HPG 109
Sbjct: 238 SNT 240
Score = 34.6 bits (80), Expect = 0.004
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS-GLGILIELDLTKNRIH 104
NN+ LPA F V+L +L L+ IT ++ F L ELD+ N
Sbjct: 569 LNNLNTLPASVFN--NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622
Score = 27.3 bits (61), Expect = 1.2
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
V+ +T + D + + L+LT N++ L
Sbjct: 4 VSHEVADCSHLKLTQVPDDLPTN---ITVLNLTHNQLRRLPAA 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 52.7 bits (127), Expect = 1e-09
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
++ + LPA + L L D I +ID AF+ + +L + N I L P
Sbjct: 54 NSTMRKLPAALL--DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 111
Score = 51.2 bits (123), Expect = 5e-09
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I +LP F+ + L L+L+ +++ + F L L ++ N + +
Sbjct: 102 FNAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 159
Score = 50.4 bits (121), Expect = 9e-09
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N++ LP F L L + + N+ I+ D F L L L+ NR+ +
Sbjct: 126 RNDLSSLPRGIFH--NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 183
Score = 50.0 bits (120), Expect = 1e-08
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
I + AF + L + I + P F + +L L L +N + +L G
Sbjct: 78 DLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 135
Score = 44.3 bits (105), Expect = 1e-06
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + + F + L L + + + + + L LDL+ N + +
Sbjct: 257 YNELEKIMYHPFV--KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERN 313
Score = 43.9 bits (104), Expect = 2e-06
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+NN+ + D F+ +L NL L +T +D L +++ N + TL
Sbjct: 150 NNNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSYNLLSTLAI 203
Score = 43.9 bits (104), Expect = 2e-06
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLL---LKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107
+I D + + L+N K+ + + + L+L +I +
Sbjct: 26 VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 85
Query: 108 PG 109
Sbjct: 86 TY 87
Score = 41.2 bits (97), Expect = 1e-05
Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 17/75 (22%)
Query: 50 SNNIPHLPADAFRS-----------------TGLVNLHNLLLKDCNITDIDPDAFSGLGI 92
N+I + L + L + I F +
Sbjct: 214 HNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273
Query: 93 LIELDLTKNRIHTLH 107
L L ++ NR+ L+
Sbjct: 274 LERLYISNNRLVALN 288
Score = 36.9 bits (86), Expect = 4e-04
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+N + L + L L L ++ ++ + L L L N I TL
Sbjct: 281 NNRLVALNLYG---QPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLS 336
Score = 36.9 bits (86), Expect = 5e-04
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
N++ H+ + L NL L +I + L L L+ N
Sbjct: 304 HNHLLHVERNQP---QFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWD 352
Score = 36.2 bits (84), Expect = 0.001
Identities = 10/71 (14%), Positives = 17/71 (23%), Gaps = 17/71 (23%)
Query: 50 SNNIPHLPADAFRS--------------TGLVNLHNLLLKDCNITDIDPDAFSGLGILIE 95
SN + H+ S + + L +I + L
Sbjct: 174 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE---LTI 230
Query: 96 LDLTKNRIHTL 106
L L N +
Sbjct: 231 LKLQHNNLTDT 241
Score = 26.2 bits (58), Expect = 2.8
Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 5/46 (10%)
Query: 69 LHNLLLKDCNITDIDPDAFSG-----LGILIELDLTKNRIHTLHPG 109
++ + D +I D + G L + + + L
Sbjct: 18 QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 63
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 52.1 bits (125), Expect = 2e-09
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I + AF T L L L + N+ ++ D F G + LD+++ RIH+L
Sbjct: 163 KNGIQEIHNSAFNGTQLDEL--NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220
Score = 47.5 bits (113), Expect = 8e-08
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 50 SNNIP-HLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGLGILIELDLTKNRIHTLH 107
N++ + AD F L LH + ++ N + I+P+AF L L L ++ I L
Sbjct: 63 QNDVLEVIEADVFS--NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP 120
Query: 108 PG 109
Sbjct: 121 DV 122
Score = 45.2 bits (107), Expect = 6e-07
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 51 NNIPHLPADAFRSTGL-VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
NI + ++F GL L L I +I AF+G + N + L
Sbjct: 139 INIHTIERNSFV--GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND 196
Score = 44.8 bits (106), Expect = 7e-07
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN-RIHTLH 107
K+NN+ ++ +AF L NL LL+ + I + + LD+ N IHT+
Sbjct: 88 KANNLLYINPEAF--QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145
Query: 108 PG 109
Sbjct: 146 RN 147
Score = 42.1 bits (99), Expect = 8e-06
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 102
+NN+ LP D F G L + I + L L +
Sbjct: 187 NNNLEELPNDVFH--GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237
Score = 40.2 bits (94), Expect = 3e-05
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI-HTLHP 108
+ + +P+D R+ + + I AFSG G L ++++++N + +
Sbjct: 18 ESKVTEIPSDLPRNAIELRFVLT-----KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 72
Query: 109 G 109
Sbjct: 73 D 73
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 52.2 bits (125), Expect = 2e-09
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
++ + LPA + L L D I +ID AF+ + +L + N I L P
Sbjct: 60 NSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117
Score = 52.2 bits (125), Expect = 2e-09
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I +LP F+ + L L+L+ +++ + F L L ++ N + +
Sbjct: 108 FNAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 165
Score = 51.9 bits (124), Expect = 3e-09
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
I + AF + L + I + P F + +L L L +N + +L G
Sbjct: 84 DLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141
Score = 50.7 bits (121), Expect = 8e-09
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N++ LP F L L + + N+ I+ D F L L L+ NR+ +
Sbjct: 132 RNDLSSLPRGIFH--NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 189
Score = 44.9 bits (106), Expect = 8e-07
Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Query: 51 NNIPHLPADAFRST---GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107
+I D + L N + K+ + + + L+L +I +
Sbjct: 32 VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 91
Query: 108 PG 109
Sbjct: 92 TY 93
Score = 44.5 bits (105), Expect = 1e-06
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + + F + L L + + + + + L LDL+ N + +
Sbjct: 263 YNELEKIMYHPFV--KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERN 319
Score = 44.1 bits (104), Expect = 1e-06
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+NN+ + D F+ +L NL L +T +D L +++ N + TL
Sbjct: 156 NNNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSYNLLSTLAI 209
Score = 41.1 bits (96), Expect = 2e-05
Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 17/76 (22%)
Query: 50 SNNIPHLPADAFRS-----------------TGLVNLHNLLLKDCNITDIDPDAFSGLGI 92
N+I + L + L + I F +
Sbjct: 220 HNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279
Query: 93 LIELDLTKNRIHTLHP 108
L L ++ NR+ L+
Sbjct: 280 LERLYISNNRLVALNL 295
Score = 37.6 bits (87), Expect = 3e-04
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
N++ H+ + L NL L +I + L L L+ N
Sbjct: 310 HNHLLHVERNQP---QFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWD 358
Score = 36.8 bits (85), Expect = 5e-04
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+N + L + L L L ++ ++ + L L L N I TL
Sbjct: 287 NNRLVALNLYGQ---PIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLS 342
Score = 35.3 bits (81), Expect = 0.002
Identities = 10/71 (14%), Positives = 17/71 (23%), Gaps = 17/71 (23%)
Query: 50 SNNIPHLPADAFRS--------------TGLVNLHNLLLKDCNITDIDPDAFSGLGILIE 95
SN + H+ S + + L +I + L
Sbjct: 180 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE---LTI 236
Query: 96 LDLTKNRIHTL 106
L L N +
Sbjct: 237 LKLQHNNLTDT 247
Score = 26.8 bits (59), Expect = 1.6
Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 7/65 (10%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI-----LIELDLTKNRIH 104
N P P + L ++ + D +I D + G + + +
Sbjct: 7 YNVKPRQPEYKCIDSNL--QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64
Query: 105 TLHPG 109
L
Sbjct: 65 KLPAA 69
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 51.2 bits (123), Expect = 3e-09
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I L DAF+ GL +L++L+L IT++ F GL L L L N+I+ L
Sbjct: 66 NQISELAPDAFQ--GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD 122
Score = 50.8 bits (122), Expect = 4e-09
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ N I +P AF L + L + I+++ PDAF GL L L L N+I L
Sbjct: 40 EQNTIKVIPPGAFS--PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK 97
Query: 109 G 109
Sbjct: 98 S 98
Score = 45.0 bits (107), Expect = 5e-07
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I LP F GL +L LLL I + DAF L L L L N++ T+ G
Sbjct: 89 GNKITELPKSLFE--GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146
Score = 39.2 bits (92), Expect = 5e-05
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ + L+ I I P AFS L +DL+ N+I L P
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 51.2 bits (123), Expect = 4e-09
Identities = 9/62 (14%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGLGILIELDLTKNR-IHTLH 107
++ +P+ AF L N+ + + + ++ +F L + +++ R + +
Sbjct: 40 ETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97
Query: 108 PG 109
P
Sbjct: 98 PD 99
Score = 49.6 bits (119), Expect = 1e-08
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGLG-ILIELDLTKNRIHTLH 107
+N + AF T L + L +T ID DAF G+ LD+++ + L
Sbjct: 165 NNGFTSVQGYAFNGT---KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP 221
Query: 108 PG 109
Sbjct: 222 SK 223
Score = 47.3 bits (113), Expect = 1e-07
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ L + +F L + ++ +++ +T IDPDA L +L L + +
Sbjct: 65 DVTLQQLESHSFY--NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD 122
Query: 109 G 109
Sbjct: 123 L 123
Score = 40.4 bits (95), Expect = 2e-05
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDI-DPDAFSGLGILIELDLTKN-RIHTLHP 108
N+ ++ DA L L L + + + D I L++T N + ++
Sbjct: 91 RNLTYIDPDAL--KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148
Query: 109 G 109
Sbjct: 149 N 149
Score = 39.6 bits (93), Expect = 5e-05
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGLG-ILIELDLTKNRIHTLH 107
+ + P L + D +T I +AF GL + L L N ++
Sbjct: 114 NTGLKMFPDLTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172
Query: 108 PG 109
Sbjct: 173 GY 174
Score = 39.2 bits (92), Expect = 6e-05
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 51 NNIPHLPADAFRSTGLVN-LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR-IHTLHP 108
+ +P +AF+ GL N L L + T + AF+G L + L KN+ + +
Sbjct: 141 PYMTSIPVNAFQ--GLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDK 197
Query: 109 G 109
Sbjct: 198 D 198
Score = 38.1 bits (89), Expect = 2e-04
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 10/58 (17%)
Query: 53 IPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN-RIHTLHPG 109
IP LP + L L + ++ I AFS L + + ++ + + L
Sbjct: 26 IPSLPP---------STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH 74
Score = 31.5 bits (72), Expect = 0.029
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 51 NNIPHLPADAFRSTGLVN-LHNLLLKDCNITDIDPDAFSGLGILIELDL 98
+ + DAF G+ + L + ++T + L LI +
Sbjct: 190 KYLTVIDKDAFG--GVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 51.3 bits (123), Expect = 5e-09
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNIT-DIDPDAFSGLGILIELDLTKNRIHTLHP 108
N I + A +F L L L L ID +AF L L LDL ++I+ LHP
Sbjct: 33 FNYIRTVTASSFP--FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90
Query: 109 G 109
Sbjct: 91 D 91
Score = 50.2 bits (120), Expect = 1e-08
Identities = 12/59 (20%), Positives = 24/59 (40%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+NI + F ++ +L L + ++ F L L L+L N+I+ +
Sbjct: 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308
Score = 49.4 bits (118), Expect = 2e-08
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ L + F L +L L L I I +AF GL L L+L+ N + L+
Sbjct: 276 GFVFSLNSRVFE--TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332
Score = 49.4 bits (118), Expect = 2e-08
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I + +AF GL NL L L + ++ F GL + +DL KN I +
Sbjct: 299 YNKINKIADEAFY--GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356
Score = 47.1 bits (112), Expect = 1e-07
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITD--IDPDAFSGLGILIELDLTKNRIHTLH 107
S+ I L DAF+ GL +L L L C ++D + F L L LDL+KN+I +L+
Sbjct: 82 SSKIYFLHPDAFQ--GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139
Query: 108 PGK 110
Sbjct: 140 LHP 142
Score = 46.7 bits (111), Expect = 2e-07
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ L D F GL +L L L + + P FS L L L L NR+ L
Sbjct: 464 QLAWETELCWDVFE--GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521
Query: 109 G 109
Sbjct: 522 N 522
Score = 46.7 bits (111), Expect = 2e-07
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107
N + L + F GL + + L+ +I I F L L LDL N + T+H
Sbjct: 324 NLLGELYSSNF--YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378
Score = 44.0 bits (104), Expect = 1e-06
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 50 SNNIP-HLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
S P + +AFR L NL L L I + PDAF GL L EL L +
Sbjct: 57 SQYTPLTIDKEAFR--NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112
Score = 43.3 bits (102), Expect = 4e-06
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N + LP F + L L L L +T + + L LD+++N++ +P
Sbjct: 489 HNYLNSLPPGVF--SHLTALRGLSLNSNRLTVLSHNDLPAN--LEILDISRNQLLAPNP 543
Score = 39.8 bits (93), Expect = 5e-05
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI-HTLH 107
+ N+ +P L LLL I + +F L L L+L T+
Sbjct: 12 RFCNLTQVP------QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65
Query: 108 PG 109
Sbjct: 66 KE 67
Score = 38.6 bits (90), Expect = 1e-04
Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 3/62 (4%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI--LIELDLTKNRIHTLH 107
N I L L +L ++ I + L L L N +++
Sbjct: 132 KNQIRSLYLHPSFG-KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190
Query: 108 PG 109
Sbjct: 191 SV 192
Score = 37.1 bits (86), Expect = 4e-04
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 50 SNNI--PHLPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHTL 106
+ L FR L L L L I + +F L L +D + N+I +
Sbjct: 106 FCGLSDAVLKDGYFR--NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163
Query: 107 HPG 109
Sbjct: 164 CEH 166
Score = 36.7 bits (85), Expect = 7e-04
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG--ILIELDLTKNRIHTLH 107
SN I A + ++ NI D D + F+GL + LDL+ + +L+
Sbjct: 225 SNAISKSQAFSL--ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282
Query: 108 PG 109
Sbjct: 283 SR 284
Score = 36.3 bits (84), Expect = 9e-04
Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 6/66 (9%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG------ILIELDLTKNRI 103
SN I + L L ++ + +L LD++ N
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216
Query: 104 HTLHPG 109
G
Sbjct: 217 TVDITG 222
Score = 34.4 bits (79), Expect = 0.003
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N+I + F+ L L L L+D +T I + + ++ L+ N++ TL
Sbjct: 347 KNHIAIIQDQTFK--FLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLPKI 399
Score = 33.2 bits (76), Expect = 0.009
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDA-FSGLGILIELDLTKNRIHTLHP 108
N + +L F + +L L+L + D S L +L L +N +
Sbjct: 410 ENRLENLDILYFL-LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468
Score = 27.8 bits (62), Expect = 0.63
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N + LP + + +L L++ +I + L L L +NR +
Sbjct: 390 GNKLVTLPKINLTANLI-HLSENRLENLDILYF----LLRVPHLQILILNQNRFSSCSG 443
Score = 27.8 bits (62), Expect = 0.75
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 105
SN + L + + NL L + + +PD F L LD+T N+
Sbjct: 513 SNRLTVLSHNDLPA----NLEILDISRNQLLAPNPDVFVS---LSVLDITHNKFIC 561
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 50.9 bits (122), Expect = 5e-09
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I + +AF GL +L L L + ID F L L LDL+ N I L
Sbjct: 308 QNEINKIDDNAFW--GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365
Score = 50.5 bits (121), Expect = 8e-09
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + + + F L L L L +I + +F GL L EL L N++ ++ G
Sbjct: 332 QNFLGSIDSRMFE--NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389
Score = 50.5 bits (121), Expect = 9e-09
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ I L F +L L L I ID +AF GL L++L+L++N + ++
Sbjct: 284 KSKIFALLKSVFS--HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341
Score = 48.2 bits (115), Expect = 6e-08
Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITD--IDPDAFSGLGILIELDLTKNRIHTLH 107
N L AF GL NL L L CN+ + + F L L L L N I +
Sbjct: 88 YNQFLQLETGAFN--GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145
Query: 108 PG 109
P
Sbjct: 146 PA 147
Score = 45.1 bits (107), Expect = 7e-07
Identities = 11/60 (18%), Positives = 18/60 (30%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N F+ + L I + FS L +L L +N I+ +
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317
Score = 42.0 bits (99), Expect = 9e-06
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 101
N+I L +F GL NL L L + + F L L ++ L N
Sbjct: 356 YNHIRALGDQSF--LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 40.1 bits (94), Expect = 3e-05
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 50 SNNIP-HLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
+ + FR GL +L L L ++ AF+GL L L LT+ +
Sbjct: 63 QQTPGLVIRNNTFR--GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116
Score = 38.2 bits (89), Expect = 2e-04
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 50 SNNI--PHLPADAFRSTGLVNLHNLLLKDCNITDIDPD-AFSGLGILIELDLTKNRIHTL 106
N+ L + F+ L +L L+L+D NI I P F + LDLT N++ ++
Sbjct: 112 QCNLDGAVLSGNFFK--PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169
Query: 107 HPG 109
Sbjct: 170 CEE 172
Score = 35.5 bits (82), Expect = 0.001
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Query: 53 IPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT-LHPG 109
+P LPA +++ + L +I +++ +FS L L L + + +
Sbjct: 25 VPELPA---------HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN 73
Score = 32.4 bits (74), Expect = 0.016
Identities = 8/69 (11%), Positives = 19/69 (27%), Gaps = 8/69 (11%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP--------DAFSGLGILIELDLTKN 101
N + + + + + L L + D++ + LDL+ N
Sbjct: 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222
Query: 102 RIHTLHPGK 110
+
Sbjct: 223 GFKESMAKR 231
Score = 31.6 bits (72), Expect = 0.038
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 5/64 (7%)
Query: 50 SNNIPHL-PADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI--LIELDLTKNRIHTL 106
NNI + PA F + H L L + I + L L+ + +
Sbjct: 138 DNNIKKIQPASFF--LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195
Query: 107 HPGK 110
+
Sbjct: 196 NEYW 199
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 50.9 bits (122), Expect = 6e-09
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + LP A R GL L L LK + + P + L +L L N + L G
Sbjct: 109 FNRLTSLPLGALR--GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166
Score = 45.1 bits (107), Expect = 6e-07
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + LP L L L + N+T++ +GL L L L +N ++T+ G
Sbjct: 133 GNELKTLPPGLLT--PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Score = 43.9 bits (104), Expect = 1e-06
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + LP + L L L + +T + A GLG L EL L N + TL PG
Sbjct: 86 HNQLQSLPL-LGQ--TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Score = 42.0 bits (99), Expect = 7e-06
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N + L L L +T + L +L LDL+ N++ +L
Sbjct: 40 ENLLYTFSLATL--MPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSL 92
Score = 35.9 bits (83), Expect = 0.001
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N+ LP D + T L L + + L +L+L + + L
Sbjct: 19 KRNLTALPPDLPKDT-----TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Score = 30.8 bits (70), Expect = 0.053
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 101
+NN+ LPA GL NL LLL++ ++ I F G +L L N
Sbjct: 157 NNNLTELPAGLLN--GLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 49.7 bits (119), Expect = 1e-08
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+N L A L L + + ITDI+ AF G + E+ LT NR+ +
Sbjct: 40 NNNEFTVLEATGIFK-KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH 98
Query: 109 G 109
Sbjct: 99 K 99
Score = 48.5 bits (116), Expect = 3e-08
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
SN + ++ F+ GL +L L+L+ IT + D+F GL + L L N+I T+ PG
Sbjct: 90 SNRLENVQHKMFK--GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147
Score = 46.2 bits (110), Expect = 2e-07
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+N I + AF G ++ +LL + ++ F GL L L L NRI +
Sbjct: 66 NNKITDIEEGAF--EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND 123
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 50.0 bits (120), Expect = 1e-08
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + LPA F L NL L + D + + F L L EL L +N++ +L P
Sbjct: 70 DNKLQTLPAGIF--KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR 127
Score = 48.8 bits (117), Expect = 3e-08
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+SN + LP+ AF L L L L D + + F L L L +T N++ L
Sbjct: 45 QSNKLSSLPSKAF--HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI 102
Query: 109 G 109
G
Sbjct: 103 G 103
Score = 48.1 bits (115), Expect = 5e-08
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + LP F L L L L + + F L L EL L N++ + G
Sbjct: 118 RNQLKSLPPRVF--DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175
Score = 46.1 bits (110), Expect = 3e-07
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + LP F LVNL L L + + P F L L L L N + +L G
Sbjct: 94 DNKLQALPIGVF--DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151
Score = 44.6 bits (106), Expect = 1e-06
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + LP F L +L L L + + + AF L L L L N++ + G
Sbjct: 142 YNELQSLPKGVFD--KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199
Score = 37.7 bits (88), Expect = 2e-04
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ L L+ ++ + AF L L L L N++ TL G
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 48.5 bits (116), Expect = 4e-08
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + HL + +F L L L C I I+ A+ L L L LT N I +L G
Sbjct: 37 FNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94
Score = 45.4 bits (108), Expect = 5e-07
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I L AF GL +L L+ + N+ ++ L L EL++ N I +
Sbjct: 85 GNPIQSLALGAFS--GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 110 K 110
+
Sbjct: 143 E 143
Score = 44.6 bits (106), Expect = 1e-06
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
I + A++ L +L L+L I + AFSGL L +L + + +L
Sbjct: 61 RCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Score = 43.5 bits (103), Expect = 2e-06
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ L AF L +L L + N +D + L L LD + N I T
Sbjct: 479 QCQLEQLSPTAFN--SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536
Score = 41.2 bits (97), Expect = 2e-05
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 50 SNNIP-HLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N+ + D F T L NL L L C + + P AF+ L L L+++ N +L
Sbjct: 454 GNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511
Query: 109 G 109
Sbjct: 512 F 512
Score = 39.6 bits (93), Expect = 6e-05
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N +P + + NL L + + +F L LDL++ I T+ G
Sbjct: 16 ELNFYKIPDNLPF-----STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Score = 36.5 bits (85), Expect = 6e-04
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Query: 50 SNNIPHL-PADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+N+ + F L NL L + + F+GL L L + N
Sbjct: 405 HSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Score = 36.2 bits (84), Expect = 0.001
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG----ILIELDLTKNRIHT 105
N I + S L NL +L L I I L + + LDL+ N ++
Sbjct: 133 HNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
Query: 106 LHPG 109
+ PG
Sbjct: 192 IQPG 195
Score = 35.4 bits (82), Expect = 0.002
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHTLHP 108
N + + ++ GL L +L + N+ + F L LI LD++
Sbjct: 382 FNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 109 G 109
G
Sbjct: 439 G 439
Score = 33.8 bits (78), Expect = 0.007
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N + + G +L L L + + + F GL L LD + + +
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE 413
Score = 33.5 bits (77), Expect = 0.009
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI-LIELDLTKNRIH 104
NN L ++ L +L L +I L L+LT+N
Sbjct: 503 HNNFFSLDTFPYK--CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 31.2 bits (71), Expect = 0.052
Identities = 11/69 (15%), Positives = 18/69 (26%), Gaps = 1/69 (1%)
Query: 42 LKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNI-TDIDPDAFSGLGILIELDLTK 100
L L N+ A + + L + D D F+ L + L
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291
Query: 101 NRIHTLHPG 109
I +
Sbjct: 292 VTIERVKDF 300
Score = 30.0 bits (68), Expect = 0.14
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 8/65 (12%)
Query: 45 KIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
+ ++I L L N+ + L I + FS L+L +
Sbjct: 266 YLDYYLDDIIDLFN------CLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFG 317
Query: 105 TLHPG 109
Sbjct: 318 QFPTL 322
Score = 29.6 bits (67), Expect = 0.19
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 60 AFRSTGLVNLHNLLLKDCNITDID--PDAFSGLGILIELDLTKNRIHTLHPG 109
AF L +L L L ++ + G L LDL+ N + T+
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391
Score = 28.8 bits (65), Expect = 0.32
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 7/58 (12%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLL----LKDCNITDIDPDAFSGLGILIELDLTKNRI 103
SN I + R L + L L + I P AF + L +L L N
Sbjct: 158 SNKIQSIYCTDLR--VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFD 212
Score = 28.5 bits (64), Expect = 0.43
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNIT-DIDPDAFSGLGILIELDLTKNRI 103
N + + AF+ LH L L++ + ++ GL L L
Sbjct: 186 LNPMNFIQPGAFKEI---RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 46.8 bits (111), Expect = 2e-07
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+++ A + N+ L L ++ I + L L+L+ N ++
Sbjct: 19 DSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75
Score = 46.0 bits (109), Expect = 3e-07
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+NNI + + N+ L + IT + + LDL N I T++
Sbjct: 108 NNNISRVSCSRGQ-----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162
Score = 38.7 bits (90), Expect = 1e-04
Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 5/57 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N I + L L L + + F + + L N++ +
Sbjct: 178 YNFIYDVKGQVV----FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLI 229
Score = 38.7 bits (90), Expect = 1e-04
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N I + + L +L L+ I D+ L LDL+ N++ + P
Sbjct: 153 LNEIDTVNFAELAA-SSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGP 208
Score = 38.7 bits (90), Expect = 1e-04
Identities = 6/44 (13%), Positives = 13/44 (29%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ D ++ + ELDL+ N + +
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA 52
Score = 38.7 bits (90), Expect = 1e-04
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSG-LGILIELDLTKNRIHTLHP 108
+N I L + L LK I ++ + L L+L N I+ +
Sbjct: 129 NNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186
Query: 109 G 109
Sbjct: 187 Q 187
Score = 37.5 bits (87), Expect = 3e-04
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + + A L L L + + L L LDL N + L G
Sbjct: 43 GNPLSQISAADLA--PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG 98
Query: 110 K 110
Sbjct: 99 P 99
Score = 35.6 bits (82), Expect = 0.001
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 10/60 (16%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+N + L ++ L + NI+ + G + L N+I L
Sbjct: 89 NNYVQELLV-------GPSIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDL 138
Score = 34.4 bits (79), Expect = 0.004
Identities = 4/60 (6%), Positives = 10/60 (16%), Gaps = 3/60 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ L + + + I L+ K +
Sbjct: 322 GSETERLECERE---NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSN 378
Score = 33.7 bits (77), Expect = 0.007
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
SN + + F + + L++ + I A L DL N H
Sbjct: 200 SNKLAFMG-PEF--QSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTL 254
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 46.4 bits (110), Expect = 2e-07
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N I L L L L++ I +D F L LDL+ N++ +
Sbjct: 30 QNYISELWTSDIL--SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84
Score = 37.2 bits (86), Expect = 4e-04
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 50 SNNIPHLPADAFRSTGLVNL-HNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N + H+P D + T ++N+ N I+++ L L L ++ NRI L
Sbjct: 9 KNGLIHVPKDLSQKTTILNISQN------YISELWTSDILSLSKLRILIISHNRIQYLDI 62
Query: 109 G 109
Sbjct: 63 S 63
Score = 35.6 bits (82), Expect = 0.001
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 101
SN I +P + L L L + + + F L L ++ L N
Sbjct: 430 SNKIKSIPKQVVK---LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 34.8 bits (80), Expect = 0.002
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
SN + + L L I I L L EL++ N++ ++ G
Sbjct: 408 SNILTDTIFRCL----PPRIKVLDLHSNKIKSIPKQVVK-LEALQELNVASNQLKSVPDG 462
Score = 34.1 bits (78), Expect = 0.005
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
+ + + +L + +TD + L L L L N++ L
Sbjct: 310 SGTRMVHMLCPSK--ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363
Score = 32.9 bits (75), Expect = 0.013
Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPD-AFSGLGILIELDLTKNRIHTLHP 108
N + L A +T + +L L + +++ + S L+ L+++ N +
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416
Query: 109 GK 110
Sbjct: 417 RC 418
Score = 27.5 bits (61), Expect = 0.91
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 6/58 (10%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDI-DPDAFSGLGILIELDLTKNRIHTL 106
N + + VNL +L L + F + L L L+ +
Sbjct: 78 HNKLVKISCH-----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS 130
Score = 27.1 bits (60), Expect = 1.4
Identities = 6/61 (9%), Positives = 16/61 (26%), Gaps = 2/61 (3%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
S+ + + N++ + S + + LD + N +
Sbjct: 284 VSDVFGFPQSYIY--EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341
Query: 109 G 109
Sbjct: 342 E 342
Score = 26.8 bits (59), Expect = 1.5
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N++ + S +L +L + +TD + LDL N+I ++
Sbjct: 383 QNSVSYDEKKGDCS-WTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIKSIPKQ 439
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 45.8 bits (109), Expect = 3e-07
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+++ A + N+ L L ++ I + L L+L+ N ++
Sbjct: 19 DSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75
Score = 45.8 bits (109), Expect = 3e-07
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+NNI + + N+ L + IT + + LDL N I T++
Sbjct: 108 NNNISRVSCSRGQ-----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162
Score = 39.6 bits (93), Expect = 6e-05
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + + A L L L + + L L LDL N + L G
Sbjct: 43 GNPLSQISAADLA--PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG 98
Query: 110 K 110
Sbjct: 99 P 99
Score = 39.2 bits (92), Expect = 7e-05
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSG-LGILIELDLTKNRIHTLHP 108
+N I L + L LK I ++ + L L+L N I+ +
Sbjct: 129 NNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186
Query: 109 G 109
Sbjct: 187 Q 187
Score = 38.8 bits (91), Expect = 9e-05
Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 5/57 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N I + L L L + + F + + L N++ +
Sbjct: 178 YNFIYDVKGQVV----FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLI 229
Score = 38.4 bits (90), Expect = 1e-04
Identities = 6/44 (13%), Positives = 13/44 (29%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ D ++ + ELDL+ N + +
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA 52
Score = 37.7 bits (88), Expect = 2e-04
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N I + + L +L L+ I D+ L LDL+ N++ + P
Sbjct: 153 LNEIDTVNFAELAA-SSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGP 208
Score = 35.0 bits (81), Expect = 0.002
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 10/60 (16%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+N + L ++ L + NI+ + G + L N+I L
Sbjct: 89 NNYVQELLV-------GPSIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDL 138
Score = 33.8 bits (78), Expect = 0.005
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
SN + + F + + L++ + I A L DL N H
Sbjct: 200 SNKLAFMG-PEF--QSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCG 252
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 44.5 bits (105), Expect = 1e-06
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N+I L L L L L I +D F L LD++ NR+ +
Sbjct: 61 QNSISELRMPDISF--LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC 118
Query: 110 K 110
Sbjct: 119 P 119
Score = 33.7 bits (77), Expect = 0.007
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
++ P + S + L TD S L L L L +N +
Sbjct: 339 SDTPFIHMVCPPS--PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392
Score = 33.3 bits (76), Expect = 0.008
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 68 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
L L +I+++ S L L L L+ NRI +L
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH 94
Score = 30.6 bits (69), Expect = 0.089
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 19 LTVESCFNTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCN 78
L L+ + A + + S+N L FR + L L +
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN--MLTGSVFRC-LPPKVKVLDLHNNR 461
Query: 79 ITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
I I P + L L EL++ N++ ++ G
Sbjct: 462 IMSI-PKDVTHLQALQELNVASNQLKSVPDG 491
Score = 27.9 bits (62), Expect = 0.66
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 101
+N I +P D L L L + + + F L L + L N
Sbjct: 459 NNRIMSIPKDVTH---LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 25.6 bits (56), Expect = 4.0
Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGL----GILIELDLTKNRIH 104
+ N + + A N+ +L D ++ ++ A+ ++ L+L+ N +
Sbjct: 385 QRNGLKNFFKVALM---TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441
Score = 25.6 bits (56), Expect = 4.4
Identities = 6/61 (9%), Positives = 15/61 (24%), Gaps = 2/61 (3%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
K+ + + ++ +L + I L+ T+N
Sbjct: 313 KNQVFLFSKEALY--SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370
Query: 109 G 109
Sbjct: 371 Q 371
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 42.6 bits (100), Expect = 5e-06
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 3/63 (4%)
Query: 50 SNNIPHLPADAFRSTGLVNL---HNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N P S+ L H + I P + LI+L + N I +
Sbjct: 762 YNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV 821
Query: 107 HPG 109
Sbjct: 822 DEK 824
Score = 40.6 bits (95), Expect = 3e-05
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 50 SNNIPHLPADAFRSTG---LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N I + S +N + L I + F+ + + L+ N + ++
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712
Query: 107 HP 108
Sbjct: 713 PE 714
Score = 39.1 bits (91), Expect = 9e-05
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N + HL A V L +L L I +I D + + L + N++ +
Sbjct: 582 HNKVRHLEA----FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634
Score = 38.7 bits (90), Expect = 1e-04
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 9/67 (13%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDI-------DPDAFSGLGILIELDLTKNR 102
N I P + F + + ++L + +T I + +L +DL N+
Sbjct: 682 YNEIQKFPTELFAT--GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739
Query: 103 IHTLHPG 109
+ +L
Sbjct: 740 LTSLSDD 746
Score = 38.7 bits (90), Expect = 1e-04
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDI-DPDAFSGLGILIELDLTKNRIHTLHP 108
N I +P D + L + I + + ++ +D + N+I +
Sbjct: 604 YNQIEEIPEDFCA--FTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661
Query: 109 G 109
Sbjct: 662 N 662
Score = 36.4 bits (84), Expect = 7e-04
Identities = 7/65 (10%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI-----LIELDLTKNRIH 104
N + ++P + F + + + ++ I + + + L+ N I
Sbjct: 628 HNKLKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686
Query: 105 TLHPG 109
Sbjct: 687 KFPTE 691
Score = 35.6 bits (82), Expect = 0.001
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 50 SNNIPHLPADAFRS-----TGLVNLHNLLLKDCNITDIDPD-AFSGLGILIELDLTKNRI 103
+N + +P ++ + L + L+ +T + D + L L +D++ N
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF 765
Query: 104 HTLHPG 109
+
Sbjct: 766 SSFPTQ 771
Score = 35.6 bits (82), Expect = 0.002
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L +L ++ L +C PD L L L++ NR +
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ 532
Score = 34.9 bits (80), Expect = 0.003
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
NN+ PA A +V L L + ++ AF L +L L N+I +
Sbjct: 557 YNNLEEFPASASLQ-KMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPED 613
Score = 29.8 bits (67), Expect = 0.14
Identities = 10/59 (16%), Positives = 14/59 (23%), Gaps = 2/59 (3%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ P + G + L L PDA L L L +
Sbjct: 309 DMWGDQPGVDLDNNG--RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365
Score = 29.1 bits (65), Expect = 0.25
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N I + +L L + +I +D L LD+ N ++
Sbjct: 791 GNRILRQWPTGITT--CPSLIQLQIGSNDIRKVDEKLTPQLY---ILDIADNPNISIDVT 845
Score = 27.1 bits (60), Expect = 1.3
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
++ + + D+ S + NL IT I A L L + + +
Sbjct: 410 RNPEMKPIKKDSRISLKDTQIGNL---TNRITFI-SKAIQRLTKLQIIYFANSPFTYDNI 465
Score = 26.0 bits (57), Expect = 3.1
Identities = 5/53 (9%), Positives = 10/53 (18%), Gaps = 9/53 (16%)
Query: 65 GLVNLHNLLLKDCNITDID---------PDAFSGLGILIELDLTKNRIHTLHP 108
L L +L + D + + N +
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565
Score = 25.6 bits (56), Expect = 4.0
Identities = 12/66 (18%), Positives = 16/66 (24%), Gaps = 4/66 (6%)
Query: 38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELD 97
RV L + DA L L L + T +
Sbjct: 322 NGRVTGLSLA--GFGAKGRVPDAIGQ--LTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377
Query: 98 LTKNRI 103
K+RI
Sbjct: 378 ERKHRI 383
Score = 25.2 bits (55), Expect = 6.2
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 3/63 (4%)
Query: 44 LKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
+IG +N I + A + L L + + T + +N
Sbjct: 428 TQIGNLTNRITFIS-KAIQR--LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484
Query: 104 HTL 106
+
Sbjct: 485 LSW 487
Score = 25.2 bits (55), Expect = 6.2
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
SN+I + L+ L + D ID + L ++ +
Sbjct: 815 SNDIRKVDEKL-----TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 39.7 bits (93), Expect = 4e-05
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+S + L FR GL L L L + + F L L L L N++ +L
Sbjct: 43 QSTGLATLSDATFR--GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100
Query: 109 G 109
G
Sbjct: 101 G 101
Score = 37.8 bits (88), Expect = 2e-04
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + L A F L L L L + + + F L L +L L N++ +L G
Sbjct: 68 YNQLQTLSAGVFD--DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG 125
Score = 33.1 bits (76), Expect = 0.008
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+N + LP F L L L L + + F L L EL L N++ ++ G
Sbjct: 92 NNQLASLPLGVF--DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG 149
Score = 32.7 bits (75), Expect = 0.014
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ L L+ + + F GL L L+L N++ TL G
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77
Score = 29.7 bits (67), Expect = 0.14
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + LP+ F L L L L + I AF L L L L+ N++ ++ G
Sbjct: 116 GNQLKSLPSGVFDR--LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 38.5 bits (89), Expect = 1e-04
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L L +L L+ I+DI+ L L L L N+I +
Sbjct: 107 DLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITV 148
Score = 38.2 bits (88), Expect = 2e-04
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L L L L+D I+DI P +GL L L L+KN I L
Sbjct: 151 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA 192
Score = 36.6 bits (84), Expect = 6e-04
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N + + L NL L L + I D+ L L L L N I ++
Sbjct: 74 GNKLTDIKPLT----NLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDING 126
Score = 35.1 bits (80), Expect = 0.002
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L L +L L + ITDI S L L L L N+I + P
Sbjct: 129 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 170
Score = 33.9 bits (77), Expect = 0.005
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L N+ L L +TDI P + L L L L +N+I L
Sbjct: 63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS 104
Score = 33.9 bits (77), Expect = 0.006
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 6/59 (10%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
S I + D LK ++TD + L + ++ + I ++
Sbjct: 8 STPIKQIFPDD----AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG 60
Score = 33.2 bits (75), Expect = 0.011
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N I + A GL L NL L +I+D+ +GL L L+L
Sbjct: 162 DNQISDIVPLA----GLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPI 214
Score = 32.4 bits (73), Expect = 0.022
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L ++ ++ + +I + L + +L L N++ + P
Sbjct: 41 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP 82
Score = 29.3 bits (65), Expect = 0.21
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 69 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ + I I PD I+ +L K +
Sbjct: 1 MGETITVSTPIKQIFPD--DAFAETIKDNLKKKSVTDAVT 38
Score = 25.1 bits (54), Expect = 6.0
Identities = 10/45 (22%), Positives = 15/45 (33%)
Query: 64 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
GL NL L L + + S L + + T + T
Sbjct: 194 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 37.3 bits (87), Expect = 3e-04
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N + + +D L +L L LK +T I+P+AF G + EL L +N+I +
Sbjct: 37 NDNELGRISSDGLFG-RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Query: 109 G 109
Sbjct: 96 K 96
Score = 33.8 bits (78), Expect = 0.005
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + + +AF ++ L L + I +I F GL L L+L N+I + PG
Sbjct: 63 RNQLTGIEPNAFEG--ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120
Score = 26.1 bits (58), Expect = 2.5
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 101
N I + F GL L L L D I+ + P +F L L L+L N
Sbjct: 87 ENKIKEISNKMF--LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 37.5 bits (88), Expect = 3e-04
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
SN I + L L++L L + + + D + GL L L L++N I + P
Sbjct: 274 SNQISDISVLN----NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 34.4 bits (80), Expect = 0.004
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ L+ L + + + D+ P + L L L L N+I + P
Sbjct: 153 NMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194
Score = 34.1 bits (79), Expect = 0.005
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L +L++L L I DI P + L L N+I + P
Sbjct: 175 NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216
Score = 33.7 bits (78), Expect = 0.005
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
+N + + + GL NL L L +ITDI P + L + D I
Sbjct: 296 NNQLGNEDMEVI--GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345
Score = 32.9 bits (76), Expect = 0.011
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ + + L NL L L ITDI P S L L L + N+I +
Sbjct: 53 GEKVASIQGIEY----LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA 105
Score = 32.5 bits (75), Expect = 0.015
Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
I + DA L +L+ ++TD+ L + +L + ++ ++
Sbjct: 9 PAPINQIFPDA----DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQG 61
Score = 32.1 bits (74), Expect = 0.020
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 64 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
L L L + I+DI + L L L L N++
Sbjct: 262 KDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDME 305
Score = 32.1 bits (74), Expect = 0.023
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 64 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ LV L NL + ITDI L L EL L ++ I + P
Sbjct: 85 SNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP 127
Score = 31.4 bits (72), Expect = 0.036
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+N I + A L NL L L + NI+DI P + L + L+L N +
Sbjct: 97 TNKITDISA----LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP 150
Score = 31.0 bits (71), Expect = 0.060
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ L++L + + ITD+ P + L L L++ N+I ++
Sbjct: 219 NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA 260
Score = 30.2 bits (69), Expect = 0.097
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+NI + L +++L L + D S + L L +T++++ + P
Sbjct: 119 EDNISDISP----LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP 172
Score = 26.4 bits (59), Expect = 2.4
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 69 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
L I I PD + L I L K + +
Sbjct: 2 AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDV 37
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 36.9 bits (86), Expect = 5e-04
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 50 SNNIPHLPADAFRS-----TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
N I + F +N+ ++ L + I+ + FS L ++L N +
Sbjct: 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470
Query: 105 TLHPG 109
+
Sbjct: 471 EIPKN 475
Score = 36.6 bits (85), Expect = 6e-04
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 50 SNNIPHLPADAFRSTGLVNL---HNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N+ P S+ L + + P+ + L +L + N I +
Sbjct: 522 YNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV 581
Score = 33.5 bits (77), Expect = 0.008
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDI-------DPDAFSGLGILIELDLTKNR 102
+N I P + F + L ++ L +T+I + + F +L +DL N+
Sbjct: 442 NNQISKFPKELF--STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499
Query: 103 IHTLHP 108
+ L
Sbjct: 500 LTKLSD 505
Score = 32.3 bits (74), Expect = 0.021
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
+ L +L L IT+I + + L N++ +
Sbjct: 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392
Score = 31.9 bits (73), Expect = 0.031
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 50 SNNIPHLPADAFRS-----TGLVNLHNLLLKDCNITDIDPD-AFSGLGILIELDLTKNRI 103
N + +P ++ + L ++ L+ +T + D + L L+ +DL+ N
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF 525
Query: 104 HTL 106
Sbjct: 526 SKF 528
Score = 31.2 bits (71), Expect = 0.043
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSG-LGILIELDLTKNRIHTLHP 108
N I +PA+ + NL + I + + ++ +D + N I ++
Sbjct: 362 YNQITEIPANFCGF--TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419
Query: 109 G 109
Sbjct: 420 K 420
Score = 30.4 bits (69), Expect = 0.082
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
L +L ++ + +C P L + +++ NR +
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288
Score = 30.4 bits (69), Expect = 0.084
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
NN+ P + + L L + AF L L+L N+I +
Sbjct: 314 YNNLKTFPVETSLQ-KMKKLGMLECLYNQLEGK-LPAFGSEIKLASLNLAYNQITEIPAN 371
Score = 29.6 bits (67), Expect = 0.19
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 8/67 (11%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI-------LIELDLTKNR 102
N + ++P + + + I +D F L + ++L+ N+
Sbjct: 386 HNKLKYIPNIFDAK-SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444
Query: 103 IHTLHPG 109
I
Sbjct: 445 ISKFPKE 451
Score = 27.7 bits (62), Expect = 0.69
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 68 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ L L+ + PDA L L L L +
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122
Score = 27.7 bits (62), Expect = 0.76
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 5/54 (9%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
SN+I + N+ L +KD ID L ++
Sbjct: 575 SNDIRKVNEKITP-----NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 36.1 bits (84), Expect = 8e-04
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 64 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
+GL NL L + ++T SGL L LD++ +
Sbjct: 85 SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124
Score = 34.2 bits (79), Expect = 0.004
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 101
++ +GL +L L + D + L + +DL+ N
Sbjct: 97 GKDVTSDKIPNL--SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146
Score = 33.0 bits (76), Expect = 0.009
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N+ +L + + + T+ +P SGL L L + + +
Sbjct: 64 YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKI 105
Score = 31.9 bits (73), Expect = 0.023
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ L ++++ L ITDI P L L L++ + +H
Sbjct: 121 HSAHDDSILTKI--NTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRG 176
Score = 30.7 bits (70), Expect = 0.058
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 64 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
L L +L ++ + D L +L I
Sbjct: 156 KTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193
Score = 28.8 bits (65), Expect = 0.26
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ +L + L + N+TD+ + +L + +P
Sbjct: 43 MNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 35.8 bits (83), Expect = 0.001
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N I L L + L L + ++ +GL + LDLT +I + P
Sbjct: 72 DNQITDLAPLK----NLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP 124
Score = 35.0 bits (81), Expect = 0.002
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L NL L LKD ITD+ P L + EL+L+ N + +
Sbjct: 61 YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA 102
Score = 33.9 bits (78), Expect = 0.006
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
GL NL L L IT+I P +GL L L + ++ L P
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP 168
Score = 32.0 bits (73), Expect = 0.024
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 64 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L + L +T I+ L LI L+L N+I L P
Sbjct: 38 ADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP 80
Score = 31.6 bits (72), Expect = 0.036
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L L L D I+DI P + L LIE+ L N+I + P
Sbjct: 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
Score = 30.8 bits (70), Expect = 0.053
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
N I + L NL + LK+ I+D+ P + L + LT I
Sbjct: 182 DNKISDISP----LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTI 229
Score = 30.0 bits (68), Expect = 0.12
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 6/60 (10%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ I + D L N + N+TD + L + L + T+
Sbjct: 5 QPTAINVIFPDP----ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG 58
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 35.0 bits (81), Expect = 0.002
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L L L L+D I+DI P +GL L L L+KN I L
Sbjct: 154 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA 195
Score = 33.9 bits (78), Expect = 0.005
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 64 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L L +L L+ I+DI+ L L L L N+I +
Sbjct: 109 KDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITV 151
Score = 33.5 bits (77), Expect = 0.008
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 64 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L L +L L + ITDI S L L L L N+I + P
Sbjct: 131 VHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 173
Score = 32.3 bits (74), Expect = 0.017
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N + + A L NL L L + + D+ L L L L N I ++
Sbjct: 77 GNKLTDIKPLA----NLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING 129
Score = 31.2 bits (71), Expect = 0.048
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L N+ L L +TDI P + L L L L +N++ L
Sbjct: 66 YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS 107
Score = 30.4 bits (69), Expect = 0.077
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 6/60 (10%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
I + +D LK ++TD + L + ++ + I ++
Sbjct: 10 VPTPIKQIFSDD----AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG 63
Score = 30.4 bits (69), Expect = 0.082
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L ++ ++ + +I + L + +L L N++ + P
Sbjct: 44 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP 85
Score = 24.6 bits (54), Expect = 8.9
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N+I L A A GL NL L L + + S L + + T + T
Sbjct: 188 NHISDLRALA----GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 34.6 bits (80), Expect = 0.003
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L NL L +++ + I L L LDL N I
Sbjct: 126 HLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG 167
Score = 32.7 bits (75), Expect = 0.015
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
NL L L I+D+ P L L EL + +NR+ L+
Sbjct: 62 FTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG 102
Score = 30.8 bits (70), Expect = 0.053
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107
L L L L IT+ + L + +DLT +
Sbjct: 148 FLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEP 188
Score = 30.8 bits (70), Expect = 0.064
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L + N + NI + L EL L+ N+I L P
Sbjct: 40 LSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP 80
Score = 30.0 bits (68), Expect = 0.10
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L L L + + +++ + L L L N +
Sbjct: 83 DLTKLEELSVNRNRLKNLNGIPSAC---LSRLFLDNNELRDTDS 123
Score = 28.8 bits (65), Expect = 0.30
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 48 EKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107
++ I + D GL N L ++TD+ L + + + I +L
Sbjct: 4 QRPTPINQVFPDP----GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA 57
Query: 108 P 108
Sbjct: 58 G 58
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.003
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 28/94 (29%)
Query: 7 CSDLLIDIDQLGLTVESCFNTWLSVGKHHALAARVLKLKIGEKSNN-IPHLPAD-----A 60
+++ + + + V F+ G RVL I E+ + I LP
Sbjct: 445 KNNVSFNAKDIQIPVYDTFD-----GSD----LRVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 61 FRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILI 94
F++T H I D P SGLG+L
Sbjct: 496 FKAT-----H--------ILDFGPGGASGLGVLT 516
Score = 25.4 bits (55), Expect = 5.9
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 10/42 (23%)
Query: 29 LSV-G-KHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVN 68
LS+ + V K+N+ HLPA LVN
Sbjct: 339 LSISNLTQEQVQDYV------NKTNS--HLPAGKQVEISLVN 372
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 34.2 bits (79), Expect = 0.005
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N + L A L L L + ++DI + L L L T N+I + P
Sbjct: 164 GNQVTDLKPLA----NLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP 216
Score = 33.8 bits (78), Expect = 0.006
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+N I + L NL L L + DI + L L +LDL N+I L P
Sbjct: 208 NNQISDITPLG----ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP 260
Score = 33.4 bits (77), Expect = 0.008
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+N I + A L NL L L + ITDIDP L L L+L+ N I +
Sbjct: 99 NNQIADITPLA----NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA 151
Score = 33.0 bits (76), Expect = 0.010
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
GL L NL L + + DI P S L L L L N I + P
Sbjct: 285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326
Score = 33.0 bits (76), Expect = 0.011
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L NL + + +TDI P L L+++ + N+I + P
Sbjct: 66 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 107
Score = 31.9 bits (73), Expect = 0.029
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L L L + ++D+ + L + L N+I L P
Sbjct: 329 SLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP 370
Score = 31.5 bits (72), Expect = 0.042
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N+ + L + L I ID L L +++ + N++ + P
Sbjct: 33 KTNVTDTVSQT----DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP 85
Score = 31.1 bits (71), Expect = 0.056
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+N I +L + GL L L L I++I P +GL L L+L +N++ + P
Sbjct: 252 NNQISNLAPLS----GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304
Score = 29.9 bits (68), Expect = 0.11
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
L N++ L I+D+ P + L + +L L
Sbjct: 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 393
Score = 28.8 bits (65), Expect = 0.32
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+N I + L NL+ L L I+DI SGL L +L N++ L P
Sbjct: 121 NNQITDIDPLK----NLTNLNRLELSSNTISDISA--LSGLTSLQQLSF-GNQVTDLKP 172
Score = 28.8 bits (65), Expect = 0.36
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
+ P + + + N +K+ I P S G E D+T N
Sbjct: 384 DQAWTNAPVNYKANVSIPNT----VKNVTGALIAPATISDGGSYTEPDITWNLPSYT 436
Score = 28.8 bits (65), Expect = 0.37
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
SN I + A +GL +L L +TD+ P + L L LD++ N++ +
Sbjct: 143 SNTISDISA----LSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSDISV 194
Score = 28.0 bits (63), Expect = 0.55
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 71 NLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ +D I I D + L ++ L K +
Sbjct: 6 ATITQDTPINQIFTD--TALAEKMKTVLGKTNVTDTVS 41
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 33.6 bits (77), Expect = 0.006
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
L L L L + I L L L+L+ N++ +
Sbjct: 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110
Score = 28.2 bits (63), Expect = 0.43
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
VNL L L + + + L L +L+L++NRI
Sbjct: 48 FVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENRIFGGLDM 89
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 33.5 bits (77), Expect = 0.006
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
L L L L D ++ L L+L+ N+I L
Sbjct: 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103
Score = 28.5 bits (64), Expect = 0.31
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
L L + +T I L L +L+L+ NR+
Sbjct: 41 FEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNRVSGGLEV 82
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 32.7 bits (75), Expect = 0.011
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
L L LL+ + I I L L EL LT N + L
Sbjct: 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103
Score = 27.3 bits (61), Expect = 0.73
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
L + D I +D F L L L + NRI + G
Sbjct: 41 LDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEG 82
Score = 24.6 bits (54), Expect = 8.4
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDI-DPDAFSGLGILIELDLTKNRI 103
N I + ++ L +L L+L + ++ ++ D D + L L L + +N +
Sbjct: 74 NRICRIGEGLDQA--LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125
Score = 24.2 bits (53), Expect = 9.9
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
V L L+ I I+ + + L +D + N I L
Sbjct: 18 AVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL 57
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 32.7 bits (75), Expect = 0.013
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N + LP F L NL L+L + + + F L L L+L N++ +L
Sbjct: 93 TGNQLQSLPNGVFD--KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150
Query: 109 G 109
G
Sbjct: 151 G 151
Score = 30.4 bits (69), Expect = 0.080
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
L NL L+L + + F L L EL L +N++ +L G
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG 127
Score = 28.4 bits (64), Expect = 0.35
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + LP F L NL L L + + F L L ELDL+ N++ +L G
Sbjct: 118 ENQLQSLPDGVFDK--LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 32.4 bits (74), Expect = 0.018
Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N I L F L+NL L L + + F L L LDL N++ L
Sbjct: 48 HDNQITKLEPGVFD--SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105
Query: 109 G 109
Sbjct: 106 A 106
Score = 30.4 bits (69), Expect = 0.069
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 71 NLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
L L D IT ++P F L L EL L N++ L G
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82
Score = 27.7 bits (62), Expect = 0.57
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
SN + LP F S L L L L +T + F L L EL + N++ L G
Sbjct: 73 SNQLGALPVGVFDS--LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG 130
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 32.2 bits (74), Expect = 0.020
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
S +P P AFR L +L ++ + + ++ PD L L L +N + L
Sbjct: 90 SVPLPQFPDQAFR---LSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPLRALPA 144
Score = 31.1 bits (71), Expect = 0.047
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
GLVNL +L L+ I + P + + L L L + + + L
Sbjct: 181 GLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSAL 221
Score = 30.7 bits (70), Expect = 0.059
Identities = 8/56 (14%), Positives = 14/56 (25%), Gaps = 2/56 (3%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
+ D L L+ + PD L L + + + L
Sbjct: 66 RALKATA-DLLEDATQPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLMEL 119
Score = 26.1 bits (58), Expect = 2.9
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 66 LVNLHNLLLKDCN-ITDIDPDAFSGLGILIELDLTKN 101
L L+LKDC+ + + P L L +LDL
Sbjct: 252 RAPLKRLILKDCSNLLTL-PLDIHRLTQLEKLDLRGC 287
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 32.0 bits (73), Expect = 0.022
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
++N++ LP F L +L L L + + F+ L L L+L+ N++ +L
Sbjct: 36 ETNSLKSLPNGVFD--ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93
Query: 109 G 109
G
Sbjct: 94 G 94
Score = 29.6 bits (67), Expect = 0.15
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 71 NLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
L L+ ++ + F L L +L L N++ +L G
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70
Score = 28.9 bits (65), Expect = 0.22
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
N + LP F L +L L L + + F L L EL L N++ +L G
Sbjct: 61 GNKLQSLPNGVFNK--LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDG 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 32.0 bits (72), Expect = 0.023
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N + LP L L L D + ++D + L L EL L NR+
Sbjct: 472 HNRLRALPPA---LAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQS 523
Score = 30.5 bits (68), Expect = 0.086
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 72 LLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
L L ++T + L ++ LDL+ NR+ L P
Sbjct: 446 LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPA 481
Score = 30.1 bits (67), Expect = 0.13
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L+ + +L L + + P A + L L L + N + +
Sbjct: 462 LLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVDG 503
Score = 26.6 bits (58), Expect = 1.7
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 66 LVNLHNLLLKDCNITDI-DPDAFSGLGILIELDLTKNRI 103
L L LLL + + L+ L+L N +
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 31.5 bits (72), Expect = 0.028
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+N I L +F + + L L+L + I P F GL L L L N I + G
Sbjct: 63 NNRISTLSNQSFSN--MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG 120
Score = 30.7 bits (70), Expect = 0.051
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
N +P +L + L + I+ + +FS + L+ L L+ NR+ + P
Sbjct: 39 DGNQFTLVPK-ELS--NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 109 G 109
Sbjct: 96 R 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 31.9 bits (72), Expect = 0.030
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLL-LKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
+N + LPA R+ ++ IT I P+ L + L N + +
Sbjct: 189 TNLLESLPAVPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSR 245
Score = 31.5 bits (71), Expect = 0.038
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 47 GEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
GE N L + + L L N++ + + + L++T+N + +L
Sbjct: 43 GENRNEAVSLLKECL----INQFSELQLNRLNLSSLPDNLPPQI---TVLEITQNALISL 95
Query: 107 HP 108
Sbjct: 96 PE 97
Score = 26.5 bits (58), Expect = 1.8
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
+N + LP +L L +++ +T + P+ L LD++ N + +L
Sbjct: 149 NNQLTMLPEL------PTSLEVLSVRNNQLTFL-PE---LPESLEALDVSTNLLESL 195
Score = 26.5 bits (58), Expect = 2.0
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N + LP +L +L + + +T + P+ +L ++ N++ L
Sbjct: 109 DNRLSTLPEL------PASLKHLDVDNNQLTML-PEL---PALLEYINADNNQLTML 155
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 31.4 bits (71), Expect = 0.043
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N + LP L +L + +T + P++ L ++L N +
Sbjct: 250 GNRLTSLPM------LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSER 299
Score = 31.4 bits (71), Expect = 0.048
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N + LPA L L + +T + P SGL EL ++ N++ +L
Sbjct: 150 DNQLASLPA------LPSELCKLWAYNNQLTSL-PMLPSGL---QELSVSDNQLASL 196
Score = 29.9 bits (67), Expect = 0.13
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
NN+ LPA L L + +T + P GL L + L G
Sbjct: 70 DNNLTSLPA------LPPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPALPSG 122
Score = 29.9 bits (67), Expect = 0.16
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 10/56 (17%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N + LP L L++ +T + L+ L + +N++ L
Sbjct: 231 NRLTSLPVL------PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL 276
Score = 27.2 bits (60), Expect = 1.1
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N + LP L+ L + +T + L EL ++ NR+ +L
Sbjct: 190 DNQLASLPTL------PSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSL 236
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 30.8 bits (70), Expect = 0.066
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 64 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPGK 110
L L L+ NIT +D S L L N++ L
Sbjct: 61 EKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLDVTP 104
Score = 30.4 bits (69), Expect = 0.088
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 68 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N + + + D + L L LD + I +
Sbjct: 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM 57
Score = 30.0 bits (68), Expect = 0.13
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 64 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
+ L+ L NIT +D + L LD + N++ +
Sbjct: 188 SQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEI 227
Score = 28.9 bits (65), Expect = 0.29
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 64 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
T L L IT++D S +L L+ N I L
Sbjct: 167 TPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL 206
Score = 28.9 bits (65), Expect = 0.32
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 64 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
T L+ L + IT++D S L+ L L + L
Sbjct: 294 THNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTEL 333
Score = 28.5 bits (64), Expect = 0.35
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+NNI L + L L +T+ID + L L D + N + L
Sbjct: 200 TNNITKLDL-----NQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVS 251
Query: 110 K 110
Sbjct: 252 T 252
Score = 28.5 bits (64), Expect = 0.42
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
SN + +L T L L L +T +D S +L L+ +N + +
Sbjct: 94 SNKLTNLDV-----TPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI 142
Score = 28.5 bits (64), Expect = 0.42
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 64 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPGK 110
+ NL L +T++D + L L L+ N++ L +
Sbjct: 82 SQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQ 125
Score = 27.7 bits (62), Expect = 0.68
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 64 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
L L +L + +ITD+ L L +L T N I TL
Sbjct: 39 EQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTL 79
Score = 26.6 bits (59), Expect = 1.7
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 64 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
T L L +T++D S L L + + +
Sbjct: 230 TPLTQLTYFDCSVNPLTELDVSTLSK---LTTLHCIQTDLLEI 269
Score = 26.6 bits (59), Expect = 1.9
Identities = 7/59 (11%), Positives = 17/59 (28%), Gaps = 7/59 (11%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ + L + L +L + +I D + L + + T+
Sbjct: 327 NTELTELDV-----SHNTKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTITMPK 378
Score = 26.2 bits (58), Expect = 2.6
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 64 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
+ L L L + +T++D S L L I
Sbjct: 315 SQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDF 354
Score = 25.0 bits (55), Expect = 6.4
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
+N + L + L L +T+ID S L ELD N+ T
Sbjct: 115 TNKLTKLD-----VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITK 163
Score = 25.0 bits (55), Expect = 7.1
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 8/56 (14%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 105
N + L + L L L ++ +ID + LI R
Sbjct: 242 VNPLTELD-----VSTLSKLTTLHCIQTDLLEID---LTHNTQLIYFQAEGCRKIK 289
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 30.1 bits (69), Expect = 0.084
Identities = 9/57 (15%), Positives = 14/57 (24%), Gaps = 4/57 (7%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
+ L A L L +T + A L +L + L
Sbjct: 36 YQELTRLKAAVGE---LPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTRL 88
Score = 30.1 bits (69), Expect = 0.090
Identities = 6/41 (14%), Positives = 10/41 (24%), Gaps = 1/41 (2%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
L L +T + A L + + L
Sbjct: 118 LPEKSKLQEIYQELTQL-KAAVGELPDQSKQQQIYQELTDL 157
Score = 28.6 bits (65), Expect = 0.30
Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 1/41 (2%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
L L +T + A L +L + L
Sbjct: 3 LPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTRL 42
Score = 28.6 bits (65), Expect = 0.32
Identities = 9/57 (15%), Positives = 14/57 (24%), Gaps = 4/57 (7%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
+ L A L L +T + A L +L + L
Sbjct: 59 YQELTRLKAAVGE---LPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTEL 111
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 29.6 bits (67), Expect = 0.15
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 8/57 (14%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
+N++ LP +L + + + ++ L L + N + L
Sbjct: 162 NNSLKKLPD------LPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKL 210
Score = 29.6 bits (67), Expect = 0.15
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N++ LP ++L +++ + + ++ L L + N + TL
Sbjct: 205 NSLKKLPD------LPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTL 252
Score = 26.5 bits (59), Expect = 1.8
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 10/59 (16%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+N + LPA L L+ ++ ++ L +L + N +
Sbjct: 326 NNKLIELPAL------PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPD 374
Score = 26.5 bits (59), Expect = 2.2
Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 6/55 (10%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
+N + P ++ +L + + D A L + + H
Sbjct: 405 TNPLREFPD------IPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
Score = 26.1 bits (58), Expect = 2.6
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ + LP +L +L+ ++T++ P+ L L+ + + L P
Sbjct: 80 NLGLSSLPEL------PPHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKALSDLPP 131
Score = 25.3 bits (56), Expect = 5.3
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 10/57 (17%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
SN I L +L L + + + ++ + L L + N + +
Sbjct: 306 SNEIRSLCDL------PPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEV 352
Score = 25.0 bits (55), Expect = 7.0
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 4/41 (9%)
Query: 68 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
H L L + ++ + L L + N + L
Sbjct: 72 QAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPE 108
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 28.4 bits (64), Expect = 0.33
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+SN + LP F L L L L I + F L L L L +N++ +L
Sbjct: 36 ESNKLQSLPHGVFDK--LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN 93
Query: 109 G 109
G
Sbjct: 94 G 94
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 27.7 bits (62), Expect = 0.68
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 68 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
L L + I + L L L ++ N+I
Sbjct: 94 TLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNW 130
Score = 27.3 bits (61), Expect = 0.82
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 33 KHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI 92
+ +A K+++ I + A + L +L L NI I SG+
Sbjct: 17 RKSVVATEAEKVELHGMIPPIEKMDATL---STLKACKHLALSTNNIEKISS--LSGMEN 71
Query: 93 LIELDLTKNRIHTL 106
L L L +N I +
Sbjct: 72 LRILSLGRNLIKKI 85
Score = 26.6 bits (59), Expect = 1.6
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
G+ NL L L I I+ + + L EL ++ N+I +L
Sbjct: 68 GMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASL 108
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 27.1 bits (60), Expect = 0.83
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 101
V+ L+L N+T + P L L L N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 1.1
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 34/108 (31%)
Query: 21 VESCFNT---WLSVGKHHALAARVLKLK------------IGEKSNNIPHLPADA----- 60
V+ + WL++ ++ + L+ + S+NI
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 61 --FRSTGLVN-LHNLLLKD-CNITDIDPDAFSGLG--ILIELDLTKNR 102
+S N L L+L + N +AF L IL+ T+ +
Sbjct: 236 RLLKSKPYENCL--LVLLNVQNAKAW--NAF-NLSCKILL---TTRFK 275
Score = 26.4 bits (57), Expect = 2.7
Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 25/109 (22%)
Query: 12 IDIDQLGLTVESCFNTWLSVGKH----HALA---------ARVLKLKIGEKSNNIPHLPA 58
++ D+L +ES N L ++ L+ +L L + + +
Sbjct: 350 VNCDKLTTIIESSLNV-LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 59 DAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107
+ LV S I +EL + + LH
Sbjct: 409 NKLHKYSLVEKQP-----------KESTISIPSIYLELKVKLENEYALH 446
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 26.9 bits (59), Expect = 1.4
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 68 NLHNLLLKDCNITDIDP--DAFSGLGILIELDLTKNRIHTL 106
L +L L + + +D L L+L+ N + +
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 26.5 bits (59), Expect = 2.2
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 65 GLVNLHNLLLKDCNITDID----PDAFSGLGILIELDLTKNRI 103
L + L DC +T+ A L EL+L N +
Sbjct: 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 68
Score = 24.9 bits (55), Expect = 7.9
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 68 NLHNLLLKDCNITDID----PDAFSGLGILIELDLTKNRI 103
+ L L++C +T L L EL L+ N +
Sbjct: 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1
d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B
2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Length = 785
Score = 26.3 bits (59), Expect = 2.7
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 17/59 (28%)
Query: 44 LKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 102
L +GE + P DA L ++ ++++L++T NR
Sbjct: 123 LGVGEYGGGLLEFPEDAL--PPGTPLSEAWPEE---------------VVLDLEVTPNR 164
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 26.0 bits (57), Expect = 3.2
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
N++ L++L L + + + L LDL+ NR+
Sbjct: 237 HNSLRDAAGAPS-CDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDRN 289
Score = 24.9 bits (54), Expect = 6.3
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 68 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L L + + + + L LDL+ N
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 25.6 bits (56), Expect = 3.6
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 63 STGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 99
+ L NL L+ ++D + + L+ L+L+
Sbjct: 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 24.1 bits (53), Expect = 9.3
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 101
+N I L F LVNL L +T I F L L +LDL N
Sbjct: 42 NNQITKLEPGVFDH--LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 24.5 bits (53), Expect = 9.9
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 63 STGLVNLHNLLLKDCNITDIDPDAF-SGLGILIELDLTKNRI 103
T + L + +D+ SG L +L++
Sbjct: 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.432
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,796,678
Number of extensions: 95463
Number of successful extensions: 1157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 729
Number of HSP's successfully gapped: 552
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)