RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17697
(110 letters)
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 39.3 bits (90), Expect = 3e-05
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+N I + F+ L NLH L+L + I+ I P AF+ L L L L+KN++ L
Sbjct: 40 NNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK 97
Score = 26.9 bits (58), Expect = 0.45
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 50 SNNIPHLPADAFRSTG----LVNLHNLLLKDCNIT--DIDPDAFSGLGILIELDL 98
+NNI + ++ F G + + L + +I P F + + + L
Sbjct: 251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
Score = 26.9 bits (58), Expect = 0.51
Identities = 9/58 (15%), Positives = 16/58 (27%), Gaps = 6/58 (10%)
Query: 55 HLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI------LIELDLTKNRIHTL 106
L + + L + NI+ I + F G + L N +
Sbjct: 230 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 287
Score = 25.8 bits (55), Expect = 1.2
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 3/86 (3%)
Query: 24 CFNTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDID 83
++ + + + +N + + G+ L + + D NIT I
Sbjct: 107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 166
Query: 84 PDAFSGLGILIELDLTKNRIHTLHPG 109
L EL L N+I +
Sbjct: 167 QGLPPSL---TELHLDGNKITKVDAA 189
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 31.8 bits (70), Expect = 0.011
Identities = 9/48 (18%), Positives = 12/48 (25%), Gaps = 2/48 (4%)
Query: 55 HLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 102
LP D F G L + I + L L +
Sbjct: 191 ELPNDVFH--GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 28.0 bits (60), Expect = 0.22
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 68 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
L + N+ ++ D F G + LD+++ RIH+L
Sbjct: 178 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 219
Score = 28.0 bits (60), Expect = 0.24
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
+ + +P+D R N L + I AFSG G L ++++++N +
Sbjct: 17 ESKVTEIPSDLPR-----NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 66
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 30.7 bits (68), Expect = 0.029
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 64 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+ L L L + ++D + + L + L N+I L P
Sbjct: 326 SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368
Score = 26.9 bits (58), Expect = 0.55
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L + L I ID L L +++ + N++ + P
Sbjct: 43 LDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP 83
Score = 24.6 bits (52), Expect = 3.3
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+N I + + NL L L + DI + L L +LDL N+I L P
Sbjct: 206 NNQISDITPLGILT----NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP 258
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 30.1 bits (66), Expect = 0.046
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107
N+ LP D + + L L + + L +L+L + + L
Sbjct: 19 KRNLTALPPDLPK-----DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 29.5 bits (65), Expect = 0.050
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 56 LPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L A + T V L L+ I I + + L +D + N I L
Sbjct: 7 LIEQAAQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDG 58
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 29.6 bits (64), Expect = 0.062
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 65 GLVNLHNLLLKDCNITDID----PDAFSGLGILIELDLTKNRI 103
L + L DC +T+ A L EL+L N +
Sbjct: 25 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 67
Score = 26.9 bits (57), Expect = 0.58
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 68 NLHNLLLKDCNITDID----PDAFSGLGILIELDLTKNRI 103
L L L DC+++D L ELDL+ N +
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 29.0 bits (63), Expect = 0.10
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 10/57 (17%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
+N + LPA L L+ ++ ++ L +L + N +
Sbjct: 293 NNKLIELPA------LPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLREF 339
Score = 24.8 bits (52), Expect = 2.9
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 68 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
H L L + ++ + P+ L L + N + L
Sbjct: 39 QAHELELNNLGLSSL-PEL---PPHLESLVASCNSLTEL 73
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 27.8 bits (60), Expect = 0.24
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 76 DCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
+ I +I F GL L L+L N+I + PG
Sbjct: 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 27.3 bits (59), Expect = 0.40
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 68 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
L L D I+DI P + L LIE+ L N+I + P
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
Score = 26.5 bits (57), Expect = 0.68
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 99
N I + A L NL + LK+ I+D+ P + L + LT
Sbjct: 182 DNKISDISPLA----SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
Score = 25.0 bits (53), Expect = 2.2
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
L + L +T I+ L LI L+L N+I
Sbjct: 40 LDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQIT 76
Score = 25.0 bits (53), Expect = 2.3
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 59 DAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
F L N + N+TD + L + L + T+
Sbjct: 11 VIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG 58
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 26.6 bits (57), Expect = 0.60
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 7/90 (7%)
Query: 18 GLTVESCFNTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDC 77
T++ + A A ++L IP + + L +L L
Sbjct: 4 ATTIKDAIRIFEERKSVVATEAEKVEL-----HGMIPPIEKMDATLSTLKACKHLALSTN 58
Query: 78 NITDIDPDAFSGLGILIELDLTKNRIHTLH 107
NI I SG+ L L L +N I +
Sbjct: 59 NIEKISS--LSGMENLRILSLGRNLIKKIE 86
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 26.3 bits (57), Expect = 0.73
Identities = 11/59 (18%), Positives = 16/59 (27%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+N + L + NL L L + L EL L N +
Sbjct: 74 NNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132
Score = 24.0 bits (51), Expect = 4.0
Identities = 8/69 (11%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 43 KLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDID--PDAFSGLGILIELDLTK 100
+ + +++ + + L +L L + + +D L L+L+
Sbjct: 43 IDVVLNRRSSMAATLRIIEEN--IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 100
Query: 101 NRIHTLHPG 109
N + +
Sbjct: 101 NELKSEREL 109
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 26.3 bits (56), Expect = 0.79
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 68 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
NL+ L L++ I P + L L L+++ N + P
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 24.2 bits (51), Expect = 3.9
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 53 IPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
+P F LK ++TD + L + ++ + I ++
Sbjct: 10 VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQG 63
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 24.5 bits (51), Expect = 4.0
Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 50 SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDA-----FSGLGILIELDLTKNRI 103
S DAF + L L L+ I + L+ L+L NR
Sbjct: 256 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 23.9 bits (51), Expect = 4.1
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 72 LLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
L L ++T + L ++ LDL+ NR+ L P
Sbjct: 3 LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPA 38
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
subunit I {Thermus thermophilus [TaxId: 274]}
Length = 549
Score = 23.4 bits (50), Expect = 7.5
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 83 DPDAFSGLGILIELDLTKNRIHTLH 107
+ DA+ L L+ + + TLH
Sbjct: 35 NVDAYPLLKRLLPFVQSYYQGLTLH 59
>d2veaa2 d.110.2.4 (A:327-514) Phytochrome-like protein Cph1
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 188
Score = 22.9 bits (49), Expect = 9.6
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 13 DIDQLGLTVESCFNTWLSVGKHHAL 37
+ ++ L F+ W + + +L
Sbjct: 137 EDGKIELHPRQSFDLWKEIVRLQSL 161
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.432
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 429,315
Number of extensions: 17194
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 41
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)