BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17699
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +GIE EVFLSLPC++ G+T ++NQ L +E+ +LKKSA +
Sbjct: 278 KGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTL 323
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +GIE EVFLSLPC++ G+T ++NQ L +E+ +LKKSA +
Sbjct: 278 KGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTL 323
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +GIE EVFLSLPCV+ G+T ++NQ L +E+ +LK SA +
Sbjct: 279 QGMYGIENEVFLSLPCVLNARGLTSVINQKLKDDEVAQLKNSADTL 324
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G HGI+EEVFLS+PCV+ ++G+T V +T EE LKKSA +
Sbjct: 277 KGFHGIKEEVFLSIPCVLGESGITDFVKVNMTAEEEGLLKKSADTL 322
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari
pdb|2V65|B Chain B, Apo Ldh From The Psychrophile C. Gunnari
Length = 331
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 37/46 (80%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G HG+++EVFLS+PCV+ ++G+T +++ L EE ++L+KSA+ +
Sbjct: 277 QGMHGVKDEVFLSVPCVLGNSGLTDVIHMTLKAEEEKQLQKSAETL 322
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +GI+E+VFLS+PC++ NG++ +V LT +E +LKKSA +
Sbjct: 278 KGLYGIKEDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKSADTL 323
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +GI+E+VFLS+PC++ NG++ +V LT +E +LKKSA +
Sbjct: 277 KGLYGIKEDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKSADTL 322
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|B Chain B, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|C Chain C, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|D Chain D, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|E Chain E, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|F Chain F, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|G Chain G, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|H Chain H, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|4I8X|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I9H|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9N|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9U|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
Length = 331
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +GI+E+VFLS+PCV+ NG++ +V LT EE LKKSA +
Sbjct: 277 KGLYGIKEDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKKSADTL 322
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +GI+++VFLS+PC++ NG++ +V LT EE +LKKSA +
Sbjct: 277 KGLYGIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKSADTL 322
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +GI+++VFLS+PC++ NG++ +V LT EE +LKKSA +
Sbjct: 277 KGLYGIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKSADTL 322
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 56 NVESCEKSKS--EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
N+ C + +G HG+ EEVFLS+PC++ ++G+T +V+ L +E ++L KSA+ +
Sbjct: 266 NLRKCHPVSTLVKGMHGVNEEVFLSVPCILGNSGLTDVVHMTLKSDEEKQLVKSAETL 323
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +GI+E VFLS+PC++ NG++ +V LT EE LKKSA +
Sbjct: 278 KGLYGIKENVFLSVPCILGQNGISDVVKVTLTPEEEAHLKKSADTL 323
>pdb|2I6T|A Chain A, Orthorhombic Structure Of The Ldh Domain Of Human
Ubiquitin- Conjugating Enzyme E2-Like Isoform A
pdb|2I6T|B Chain B, Orthorhombic Structure Of The Ldh Domain Of Human
Ubiquitin- Conjugating Enzyme E2-Like Isoform A
pdb|3DL2|A Chain A, Hexagonal Structure Of The Ldh Domain Of Human Ubiquitin-
Conjugating Enzyme E2-Like Isoform A
pdb|3DL2|B Chain B, Hexagonal Structure Of The Ldh Domain Of Human Ubiquitin-
Conjugating Enzyme E2-Like Isoform A
Length = 303
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 65 SEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEI-EKLKKSAQAI 111
++G++ I EVFLSLPC++ NGV+ ++ L ++ + EKL+ SA +I
Sbjct: 247 AKGYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSI 294
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
pdb|8LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 330
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 69 HGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+GI++ VFLSLPCV+ D+G+++IV L E ++L+KSA +
Sbjct: 279 YGIKDNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATTL 321
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 329
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 69 HGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+GI++ VFLSLPCV+ D+G+++IV L E ++L+KSA +
Sbjct: 278 YGIKDNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATTL 320
>pdb|3LDH|A Chain A, A Comparison Of The Structures Of Apo Dogfish M4 Lactate
Dehydrogenase And Its Ternary Complexes
Length = 330
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Query: 69 HGIEEEVFLSLPCVMADNGVTH--IVNQPLTQEEIEKLKKSAQAI 111
+GI++ VFLSLPCV+ +NG++H IV L +E ++L+KSA +
Sbjct: 278 YGIKDNVFLSLPCVL-NNGISHCNIVKMKLKPDEEQQLQKSATTL 321
>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LLD|B Chain B, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LTH|T Chain T, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
pdb|1LTH|R Chain R, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
Length = 319
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 69 HGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYF 118
HGI + + +S+P ++ GV + +N P++ +E+ LK+SA+ + + F
Sbjct: 269 HGISD-ICMSVPTLLNRQGVNNTINTPVSDKELAALKRSAETLKETAAQF 317
>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
pdb|3H3J|B Chain B, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
Length = 317
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 72 EEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYM 116
EE+V++ +P V+ NG+ ++V PL EE K SA+ + +D M
Sbjct: 267 EEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFAHSAKTL-KDIM 310
>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D0O|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D4P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
pdb|3D4P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
Length = 317
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 72 EEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYM 116
EE+V++ +P V+ NG+ ++V PL EE K SA+ + +D M
Sbjct: 267 EEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFAHSAKTL-KDIM 310
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQ 113
+G +GI + +++ P V+ NG+ +I+ PLT E E ++KSA + +
Sbjct: 264 DGQYGIND-LYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKK 310
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|B Chain B, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|C Chain C, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|D Chain D, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|A Chain A, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|B Chain B, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|C Chain C, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|D Chain D, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|E Chain E, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|F Chain F, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|3VKV|A Chain A, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|B Chain B, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|C Chain C, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|D Chain D, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|E Chain E, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|F Chain F, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
Length = 326
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQ 113
+G +G+ + +++ P V+ NG+ +I+ PLT E E ++KSA + +
Sbjct: 265 DGQYGLND-IYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKK 311
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQ 113
+G +G+ + +++ P V+ NG+ +I+ PLT E E ++KSA + +
Sbjct: 265 DGQYGLND-IYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKK 311
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQD 114
+G +GI+ F+ +P + NGV HI L Q +++ L+KSA+ + ++
Sbjct: 254 DGQYGIDG-TFVGVPVKLGKNGVEHIYEIKLDQSDLDLLQKSAKIVDEN 301
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 67 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
G +G+ + ++ +P ++ GV I+ PL +EE+ L SA+A+
Sbjct: 256 GQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAV 299
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 67 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
G +G+ + ++ +P ++ GV I+ PL +EE+ L SA+A+
Sbjct: 256 GQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAV 299
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 67 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
G +G+ + ++ +P ++ GV I+ PL +EE+ L SA+A+
Sbjct: 256 GQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAV 299
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 67 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
G +G+ + ++ +P ++ GV I+ PL +EE+ L SA+A+
Sbjct: 256 GQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAV 299
>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|B Chain B, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|C Chain C, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|D Chain D, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
Length = 308
Score = 33.1 bits (74), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 37 GPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96
GP GL ++ + DS +G +G + + +P V+ +G+ I+ PL
Sbjct: 224 GPAAGLVLTVEA--IKRDSKRIYPYSLYLQGEYGYND-IVAEVPAVIGKSGIERIIELPL 280
Query: 97 TQEEIEKLKKSAQAISQ 113
T++E K ++ QA+ +
Sbjct: 281 TEDEKRKFDEAVQAVKK 297
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 33.1 bits (74), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQD 114
EG +GI++ F+ +P + NGV I L Q +++ L+KSA+ + ++
Sbjct: 254 EGQYGIDK-TFVGVPVKLGRNGVEQIYEINLDQADLDLLQKSAKIVDEN 301
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 33.1 bits (74), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQD 114
EG +GI++ F+ +P + NGV I L Q +++ L+KSA+ + ++
Sbjct: 254 EGQYGIDK-TFVGVPVKLGRNGVEQIYEINLDQADLDLLQKSAKIVDEN 301
>pdb|2ZBL|A Chain A, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
pdb|2ZBL|B Chain B, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
pdb|2ZBL|C Chain C, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
pdb|2ZBL|D Chain D, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
pdb|2ZBL|E Chain E, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
pdb|2ZBL|F Chain F, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
Length = 421
Score = 32.7 bits (73), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 1 MNFGSGGWWFEFKSSHKISV-VFSAGNDIKFMLNTIEGPR----GGLTHNIQVPLLDFDS 55
M++ +G WW E + +K++ V+ DI +L+ + PR GL + LLD ++
Sbjct: 353 MDYENGSWWQELDADNKVTTKVWDGKQDIYHLLHCLVIPRLPLAPGLAPAVAAGLLDINA 412
Query: 56 NVE 58
+E
Sbjct: 413 KLE 415
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Nadh
pdb|2X0J|A Chain A, 2.8 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Etheno-Nad
Length = 294
Score = 32.7 bits (73), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQ 113
+G +GIE V + +P + NG + + L+ EEIEKL+ SA+ + +
Sbjct: 242 QGEYGIEN-VAVGVPAKLGKNG-AEVADIKLSDEEIEKLRNSAKILRE 287
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 27 DIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKS---------EGHHGIEEEVFL 77
D+K TI +G + I V + ++ VE+ K+++ G +GIE+ V +
Sbjct: 219 DVKTAGATIIKNKGATYYGIAVSI---NTIVETLLKNQNTIRTVGTVINGMYGIED-VAI 274
Query: 78 SLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQ 113
SLP ++ GV ++ LT EE E L+ SA+ + +
Sbjct: 275 SLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQVKK 310
>pdb|2RGK|A Chain A, Functional Annotation Of Escherichia Coli Yihs-Encoded
Protein
pdb|2RGK|B Chain B, Functional Annotation Of Escherichia Coli Yihs-Encoded
Protein
pdb|2RGK|C Chain C, Functional Annotation Of Escherichia Coli Yihs-Encoded
Protein
pdb|2RGK|D Chain D, Functional Annotation Of Escherichia Coli Yihs-Encoded
Protein
pdb|2RGK|E Chain E, Functional Annotation Of Escherichia Coli Yihs-Encoded
Protein
pdb|2RGK|F Chain F, Functional Annotation Of Escherichia Coli Yihs-Encoded
Protein
Length = 421
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 1 MNFGSGGWWFEFKSSHKISV-VFSAGNDIKFMLNTIEGPR----GGLTHNIQVPLLDFDS 55
M++ +G WW E + +K++ V+ DI +L+ + PR G+ + LLD ++
Sbjct: 353 MDYENGSWWQELDADNKVTTKVWDGKQDIYHLLHCLVIPRIPLAPGMAPAVAAGLLDINA 412
Query: 56 NVE 58
+E
Sbjct: 413 KLE 415
>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOV|B Chain B, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOW|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
pdb|1SOW|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
Length = 328
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQ 113
+G +G+ + +F+ LP V+ G+ ++ LT EE E +KS + +
Sbjct: 271 QGEYGLHD-MFIGLPAVIGGGGIEQVIELELTHEEQECFRKSVDDVVE 317
>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
pdb|3CZM|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
Length = 326
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQ 113
+G +G+ + +F+ LP V+ G+ ++ LT EE E +KS + +
Sbjct: 271 QGEYGLHD-MFIGLPAVIGGGGIEQVIELELTHEEQECFRKSVDDVVE 317
>pdb|3IZR|F Chain F, Localization Of The Large Subunit Ribosomal Proteins
Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
Translating 80s Ribosome
Length = 190
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 34 TIEGPRGGLTHNIQVPLLDF 53
T+EGPRG LT N + LDF
Sbjct: 26 TVEGPRGKLTRNFKHLNLDF 45
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 75 VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSA 108
V LSLP V+ GV ++ LT +E +KL++SA
Sbjct: 259 VSLSLPRVVGRQGVLSTLHPKLTGDEQQKLEQSA 292
>pdb|2AFA|A Chain A, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
pdb|2AFA|B Chain B, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
pdb|2AFA|C Chain C, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
pdb|2AFA|D Chain D, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
pdb|2AFA|E Chain E, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
pdb|2AFA|F Chain F, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
Length = 425
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 2 NFGSGGWWFEFKSSHKISV-VFSAGNDIKFMLNTIEGPR----GGLTHNIQVPLLDFDS 55
++ +G WW E + +K++ V+ DI +L+ + PR GL + LLD ++
Sbjct: 356 DYENGSWWQELDADNKVTTKVWDGKQDIYHLLHCLVIPRLPLAPGLAPAVAAGLLDINA 414
>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
Length = 317
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +G E +V++ +P V+ NG+ ++ L +E + SA +
Sbjct: 263 DGLYG-ERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATL 307
>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|B Chain B, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|C Chain C, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|D Chain D, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|E Chain E, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|F Chain F, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|G Chain G, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|H Chain H, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
Length = 316
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +G E +V++ +P V+ NG+ ++ L +E + SA +
Sbjct: 263 DGLYG-ERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATL 307
>pdb|1HYH|A Chain A, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|B Chain B, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|C Chain C, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|D Chain D, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
Length = 309
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 75 VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTT 121
++LS P ++ +GV LT +E EKL +S I Q + + T
Sbjct: 262 MYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSRDYIQQRFDEIVDT 308
>pdb|1WZ8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|B Chain B, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|C Chain C, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|D Chain D, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|E Chain E, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|F Chain F, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
Length = 264
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 83 MADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMY 117
MA ++N+PLT EE E+L A A+ + +Y
Sbjct: 162 MAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVY 196
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei
pdb|1OC4|B Chain B, Lactate Dehydrogenase From Plasmodium Berghei
Length = 322
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQ 113
EG +G +++F P V+ NGV ++ L +E +K ++ S+
Sbjct: 265 EGQYG-HKDIFAGTPLVIGGNGVEQVIELQLNADEKKKFDEAVAETSR 311
>pdb|3N2S|A Chain A, Structure Of Nfra1 Nitroreductase From B. Subtilis
pdb|3N2S|B Chain B, Structure Of Nfra1 Nitroreductase From B. Subtilis
pdb|3N2S|C Chain C, Structure Of Nfra1 Nitroreductase From B. Subtilis
pdb|3N2S|D Chain D, Structure Of Nfra1 Nitroreductase From B. Subtilis
Length = 249
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 78 SLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIS 112
++ ++ + +Q LT EEI+ L KSAQA S
Sbjct: 4 TIETILNHRSIRSFTDQLLTAEEIDTLVKSAQAAS 38
>pdb|2F9I|A Chain A, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
pdb|2F9I|C Chain C, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
Length = 327
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 38 PRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLT 97
PRG + + + PL + + +ES ++S+ + ++EE+ + + + + +P
Sbjct: 10 PRGSML-DFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWD 68
Query: 98 QEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127
+ +I +L++ + YIP IF
Sbjct: 69 RVQIARLQERPTTLD---------YIPYIF 89
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYG|B Chain B, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYE|A Chain A, Crystal Structure Of The Mj0490 Gene Product, The Family
Of LactateMALATE DEHYDROGENASE, DIMERIC STRUCTURE
Length = 313
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 73 EEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQ 113
+V + +P + +G+ +V+ L ++EI +KSA+ I +
Sbjct: 265 RDVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEIIKK 305
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 47 QVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKK 106
QVP +D N+ES ++ I E L D GV H++N + + +E++KK
Sbjct: 46 QVPTIDL-KNIESDDEK-------IRENCIEELKKASLDWGVMHLINHGIPADLMERVKK 97
Query: 107 SAQ 109
+ +
Sbjct: 98 AGE 100
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 47 QVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKK 106
QVP +D N+ES ++ I E L D GV H++N + + +E++KK
Sbjct: 45 QVPTIDL-KNIESDDEK-------IRENCIEELKKASLDWGVMHLINHGIPADLMERVKK 96
Query: 107 SAQ 109
+ +
Sbjct: 97 AGE 99
>pdb|1N5W|C Chain C, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N5W|F Chain F, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N60|C Chain C, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N60|F Chain F, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N61|C Chain C, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N61|F Chain F, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N62|C Chain C, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N62|F Chain F, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N63|C Chain C, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1N63|F Chain F, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
Length = 288
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 81 CVMADNGVTHIVNQPLTQEEIEKL 104
CV A G+T++ N PL EE K+
Sbjct: 209 CVTASIGLTNVANTPLWAEEAGKV 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,383,982
Number of Sequences: 62578
Number of extensions: 159733
Number of successful extensions: 517
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 62
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)