Query psy17699
Match_columns 149
No_of_seqs 141 out of 1306
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 20:43:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02866 Ldh_1_C: lactate/mala 99.9 3.2E-26 6.9E-31 178.2 9.7 100 19-120 69-172 (174)
2 COG0039 Mdh Malate/lactate deh 99.9 1.2E-25 2.5E-30 192.6 11.5 103 16-121 206-310 (313)
3 PTZ00082 L-lactate dehydrogena 99.9 1.1E-25 2.3E-30 191.7 10.8 97 19-118 221-320 (321)
4 TIGR01763 MalateDH_bact malate 99.9 4E-25 8.8E-30 186.7 10.3 97 18-117 205-304 (305)
5 cd05292 LDH_2 A subgroup of L- 99.9 4.6E-25 1E-29 185.9 10.4 97 18-117 210-307 (308)
6 TIGR01771 L-LDH-NAD L-lactate 99.9 4.6E-25 9.9E-30 186.3 10.0 93 18-113 206-299 (299)
7 PLN02602 lactate dehydrogenase 99.9 7.6E-25 1.6E-29 189.3 10.6 100 18-119 248-349 (350)
8 TIGR01756 LDH_protist lactate 99.9 1.7E-24 3.6E-29 184.6 12.3 104 18-121 203-311 (313)
9 PTZ00117 malate dehydrogenase; 99.9 1.3E-24 2.8E-29 184.4 11.5 100 18-120 214-316 (319)
10 cd01336 MDH_cytoplasmic_cytoso 99.9 1.2E-24 2.7E-29 185.5 11.0 100 19-118 223-324 (325)
11 PLN00135 malate dehydrogenase 99.9 1.6E-24 3.4E-29 184.6 11.4 105 18-122 202-308 (309)
12 cd05291 HicDH_like L-2-hydroxy 99.9 1.2E-24 2.7E-29 182.5 9.1 97 17-116 208-305 (306)
13 PTZ00325 malate dehydrogenase; 99.9 4.8E-24 1E-28 182.5 11.2 100 19-120 210-315 (321)
14 cd01338 MDH_choloroplast_like 99.9 9.6E-24 2.1E-28 180.1 12.1 101 18-118 218-320 (322)
15 cd05290 LDH_3 A subgroup of L- 99.9 4.7E-24 1E-28 181.0 10.1 95 18-115 211-306 (307)
16 TIGR01759 MalateDH-SF1 malate 99.9 7.6E-24 1.6E-28 181.1 11.4 99 19-117 220-322 (323)
17 cd05293 LDH_1 A subgroup of L- 99.9 9E-24 1.9E-28 179.5 10.9 97 18-116 214-311 (312)
18 cd00704 MDH Malate dehydrogena 99.9 1.3E-23 2.8E-28 179.4 11.1 100 19-118 220-322 (323)
19 TIGR01772 MDH_euk_gproteo mala 99.9 2E-23 4.3E-28 178.0 11.2 101 18-120 202-308 (312)
20 KOG1495|consensus 99.9 6.8E-24 1.5E-28 180.3 7.6 96 21-118 234-330 (332)
21 PRK00066 ldh L-lactate dehydro 99.9 2.7E-23 5.8E-28 176.5 11.2 98 18-118 215-313 (315)
22 cd00300 LDH_like L-lactate deh 99.9 2.3E-23 5E-28 175.1 10.5 95 18-115 204-299 (300)
23 cd01339 LDH-like_MDH L-lactate 99.9 3.6E-23 7.9E-28 172.8 10.3 94 19-115 203-299 (300)
24 PRK05442 malate dehydrogenase; 99.9 1.1E-22 2.3E-27 174.2 12.0 100 19-119 221-323 (326)
25 PRK05086 malate dehydrogenase; 99.9 1.9E-22 4.2E-27 171.0 11.5 99 19-120 204-308 (312)
26 cd05294 LDH-like_MDH_nadp A la 99.9 1.7E-22 3.7E-27 170.8 10.6 97 18-117 210-308 (309)
27 TIGR01758 MDH_euk_cyt malate d 99.9 2.6E-22 5.7E-27 171.4 11.2 102 18-119 219-323 (324)
28 cd01337 MDH_glyoxysomal_mitoch 99.9 3.6E-22 7.7E-27 170.3 10.8 99 18-119 203-307 (310)
29 PLN00106 malate dehydrogenase 99.9 1.3E-21 2.9E-26 167.5 10.2 96 18-116 221-322 (323)
30 PRK06223 malate dehydrogenase; 99.9 3.1E-21 6.8E-26 160.6 10.6 98 18-118 206-306 (307)
31 TIGR01757 Malate-DH_plant mala 99.8 5.6E-21 1.2E-25 167.6 11.8 101 18-120 260-366 (387)
32 PLN00112 malate dehydrogenase 99.8 1.2E-20 2.7E-25 167.9 11.6 101 18-118 316-420 (444)
33 cd05295 MDH_like Malate dehydr 99.8 2.3E-19 5E-24 160.2 11.2 98 18-117 352-449 (452)
34 cd00650 LDH_MDH_like NAD-depen 99.7 2.6E-16 5.7E-21 129.2 10.5 76 38-115 187-262 (263)
35 KOG1494|consensus 99.1 4.4E-10 9.5E-15 96.8 9.6 100 18-120 232-337 (345)
36 cd05298 GH4_GlvA_pagL_like Gly 98.7 1.7E-07 3.7E-12 83.7 11.1 81 38-120 315-396 (437)
37 KOG1496|consensus 98.0 5.3E-05 1.1E-09 65.0 9.4 106 14-119 221-327 (332)
38 COG1486 CelF Alpha-galactosida 97.1 0.0047 1E-07 56.0 10.3 88 39-128 319-407 (442)
39 PRK15076 alpha-galactosidase; 95.8 0.13 2.9E-06 46.0 11.1 78 39-118 307-385 (431)
40 PF11975 Glyco_hydro_4C: Famil 95.7 0.16 3.5E-06 41.2 10.3 91 30-127 132-223 (232)
41 cd05297 GH4_alpha_glucosidase_ 95.6 0.16 3.5E-06 45.1 10.7 80 39-120 310-390 (423)
42 cd05296 GH4_P_beta_glucosidase 95.5 0.18 3.8E-06 45.2 10.7 79 39-119 302-381 (419)
43 cd05197 GH4_glycoside_hydrolas 95.4 0.21 4.5E-06 44.8 10.8 66 39-106 313-379 (425)
44 PF14584 DUF4446: Protein of u 71.9 8.9 0.00019 30.1 4.8 15 93-107 136-150 (151)
45 PF02786 CPSase_L_D2: Carbamoy 63.8 29 0.00063 28.1 6.4 50 88-146 125-178 (211)
46 PF05397 Med15_fungi: Mediator 59.9 21 0.00045 26.7 4.6 34 95-129 28-61 (115)
47 COG1086 Predicted nucleoside-d 56.3 12 0.00025 35.6 3.3 102 30-141 116-227 (588)
48 PF11239 DUF3040: Protein of u 49.7 21 0.00045 24.7 3.0 21 94-114 1-21 (82)
49 PF04026 SpoVG: SpoVG; InterP 49.6 29 0.00063 24.7 3.7 35 74-108 42-76 (84)
50 PF10335 DUF294_C: Putative nu 46.2 32 0.00068 26.1 3.7 31 91-121 113-144 (145)
51 PF05524 PEP-utilisers_N: PEP- 45.1 90 0.0019 22.5 5.9 49 73-122 8-58 (123)
52 PF09011 HMG_box_2: HMG-box do 42.8 50 0.0011 21.8 3.9 27 95-121 45-71 (73)
53 PRK12897 methionine aminopepti 42.6 37 0.0008 27.5 3.8 29 96-124 5-33 (248)
54 PRK13259 regulatory protein Sp 41.8 45 0.00098 24.4 3.8 35 74-108 42-76 (94)
55 PF08848 DUF1818: Domain of un 41.3 41 0.00088 25.7 3.6 44 78-125 17-60 (117)
56 PF00505 HMG_box: HMG (high mo 40.7 48 0.001 21.0 3.5 28 95-122 41-68 (69)
57 COG4671 Predicted glycosyl tra 40.0 1.8E+02 0.0039 26.6 7.9 85 35-128 19-111 (400)
58 cd00139 PIPKc Phosphatidylinos 39.5 55 0.0012 28.4 4.6 41 95-135 115-156 (313)
59 TIGR00500 met_pdase_I methioni 39.3 45 0.00098 26.7 3.8 28 97-124 5-32 (247)
60 PRK10972 Z-ring-associated pro 36.6 66 0.0014 24.1 4.1 30 91-120 14-43 (109)
61 smart00398 HMG high mobility g 36.0 84 0.0018 19.6 4.1 28 95-122 42-69 (70)
62 PF06296 DUF1044: Protein of u 34.4 57 0.0012 24.7 3.5 31 94-124 83-113 (120)
63 PF15508 NAAA-beta: beta subun 34.4 96 0.0021 21.9 4.5 36 90-125 6-46 (95)
64 PRK11546 zraP zinc resistance 34.1 79 0.0017 24.8 4.3 40 90-129 38-77 (143)
65 PF14164 YqzH: YqzH-like prote 33.1 60 0.0013 22.4 3.0 21 93-113 23-43 (64)
66 PRK09706 transcriptional repre 32.2 80 0.0017 23.3 3.9 30 95-124 98-127 (135)
67 TIGR00135 gatC glutamyl-tRNA(G 31.8 96 0.0021 21.6 4.1 29 92-120 13-41 (93)
68 PRK00034 gatC aspartyl/glutamy 31.5 1E+02 0.0022 21.4 4.2 30 91-120 14-43 (95)
69 PRK12318 methionine aminopepti 31.3 69 0.0015 27.1 3.8 30 96-125 44-73 (291)
70 PF01504 PIP5K: Phosphatidylin 30.6 80 0.0017 26.2 4.1 51 96-146 35-88 (252)
71 PRK09458 pspB phage shock prot 30.4 94 0.002 22.0 3.8 25 94-118 34-61 (75)
72 PRK07281 methionine aminopepti 30.3 73 0.0016 27.0 3.8 30 96-125 5-34 (286)
73 PF12296 HsbA: Hydrophobic sur 29.8 90 0.002 22.2 3.8 33 94-126 59-91 (124)
74 PRK05716 methionine aminopepti 29.5 82 0.0018 25.2 3.8 29 97-125 7-35 (252)
75 PF01230 HIT: HIT domain; Int 29.3 98 0.0021 21.2 3.8 37 82-120 31-67 (98)
76 PRK12896 methionine aminopepti 28.9 85 0.0018 25.1 3.8 30 96-125 11-40 (255)
77 PF05377 FlaC_arch: Flagella a 28.3 1.2E+02 0.0025 20.3 3.7 25 98-122 20-44 (55)
78 COG0721 GatC Asp-tRNAAsn/Glu-t 28.3 1.1E+02 0.0024 22.0 4.0 28 93-120 16-43 (96)
79 cd01389 MATA_HMG-box MATA_HMG- 28.3 97 0.0021 20.6 3.5 28 95-122 42-69 (77)
80 cd07019 S49_SppA_1 Signal pept 27.7 1.7E+02 0.0038 23.2 5.4 77 36-120 82-167 (211)
81 cd01885 EF2 EF2 (for archaea a 27.5 75 0.0016 25.8 3.3 63 78-140 125-197 (222)
82 PLN02472 uncharacterized prote 27.0 1.6E+02 0.0035 24.6 5.3 42 74-124 186-227 (246)
83 cd01854 YjeQ_engC YjeQ/EngC. 26.9 49 0.0011 27.7 2.2 43 81-141 216-259 (287)
84 PF06059 DUF930: Domain of Unk 26.9 37 0.00081 25.1 1.3 12 3-14 56-67 (101)
85 cd06007 R3H_DEXH_helicase R3H 26.6 95 0.0021 20.6 3.1 22 89-110 18-39 (59)
86 PF10083 DUF2321: Uncharacteri 26.4 56 0.0012 26.2 2.3 52 60-112 44-114 (158)
87 cd02640 R3H_NRF R3H domain of 25.8 96 0.0021 20.6 3.0 24 88-111 18-41 (60)
88 PF01402 RHH_1: Ribbon-helix-h 25.2 38 0.00082 19.6 0.9 21 92-112 2-22 (39)
89 cd02639 R3H_RRM R3H domain of 25.1 1.1E+02 0.0023 20.5 3.2 23 89-111 19-41 (60)
90 KOG3176|consensus 24.1 1.3E+02 0.0028 25.4 4.1 36 93-128 120-155 (223)
91 PF13487 HD_5: HD domain; PDB: 23.9 78 0.0017 20.5 2.3 24 95-118 2-25 (64)
92 TIGR02993 ectoine_eutD ectoine 23.7 1.1E+02 0.0024 26.7 3.9 44 82-125 145-188 (391)
93 cd01388 SOX-TCF_HMG-box SOX-TC 23.7 1.4E+02 0.003 19.6 3.6 25 95-119 42-66 (72)
94 PF11101 DUF2884: Protein of u 23.7 85 0.0018 25.9 3.0 41 81-129 26-68 (229)
95 PF08938 HBS1_N: HBS1 N-termin 23.6 14 0.00031 25.5 -1.4 22 94-115 18-39 (79)
96 cd04757 Commd9 COMM_Domain con 23.6 1.3E+02 0.0027 22.7 3.6 31 89-119 77-107 (108)
97 cd01390 HMGB-UBF_HMG-box HMGB- 23.4 1.5E+02 0.0033 18.4 3.6 23 95-117 41-63 (66)
98 PF09274 ParG: ParG; InterPro 23.3 90 0.0019 22.1 2.6 39 86-124 31-69 (76)
99 PLN03185 phosphatidylinositol 23.3 1.3E+02 0.0027 29.7 4.4 45 95-139 463-507 (765)
100 PF02251 PA28_alpha: Proteasom 23.1 1.4E+02 0.003 20.2 3.5 36 97-132 2-38 (64)
101 PF05121 GvpK: Gas vesicle pro 22.8 1.8E+02 0.0038 21.2 4.1 30 93-122 39-68 (88)
102 PF12495 Vip3A_N: Vegetative i 22.8 1.2E+02 0.0027 23.9 3.6 29 100-128 84-112 (177)
103 smart00065 GAF Domain present 22.6 2.2E+02 0.0048 18.2 6.4 46 74-119 92-143 (149)
104 PF04201 TPD52: Tumour protein 22.4 1.6E+02 0.0034 23.7 4.2 33 94-126 24-56 (162)
105 PRK11409 antitoxin YefM; Provi 22.2 1.5E+02 0.0032 20.7 3.6 30 78-109 24-53 (83)
106 PF02686 Glu-tRNAGln: Glu-tRNA 22.2 86 0.0019 20.4 2.3 24 96-119 1-24 (72)
107 COG2088 SpoVG Uncharacterized 22.1 1.2E+02 0.0026 22.3 3.2 35 74-108 42-76 (95)
108 PF10339 Vel1p: Yeast-specific 21.6 72 0.0016 26.2 2.1 66 61-143 34-99 (203)
109 cd01275 FHIT FHIT (fragile his 21.4 1.7E+02 0.0038 21.0 4.0 27 94-120 49-75 (126)
110 PRK10391 oriC-binding nucleoid 21.4 58 0.0013 22.9 1.3 41 93-139 27-69 (71)
111 PF15337 Vasculin: Vascular pr 21.4 1.1E+02 0.0024 22.6 2.9 22 93-114 31-52 (97)
112 PF02953 zf-Tim10_DDP: Tim10/D 21.3 2E+02 0.0043 18.6 3.9 30 93-122 34-63 (66)
113 PF13801 Metal_resist: Heavy-m 21.2 2.1E+02 0.0045 19.4 4.2 27 93-119 39-65 (125)
114 PF05164 ZapA: Cell division p 20.7 76 0.0016 21.3 1.8 31 91-121 10-40 (89)
115 PF14513 DAG_kinase_N: Diacylg 20.4 1.3E+02 0.0028 23.3 3.2 28 95-122 7-34 (138)
116 PF11460 DUF3007: Protein of u 20.4 75 0.0016 23.8 1.8 14 95-108 89-102 (104)
117 PF08899 DUF1844: Domain of un 20.2 1.3E+02 0.0027 21.2 2.8 21 93-113 52-72 (74)
No 1
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=99.93 E-value=3.2e-26 Score=178.22 Aligned_cols=100 Identities=31% Similarity=0.343 Sum_probs=94.7
Q ss_pred hhhhccchhh-ccc-CcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccc-eEEEeeEEEcCCceeEEec-C
Q psy17699 19 SVVFSAGNDI-KFM-LNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEE-VFLSLPCVMADNGVTHIVN-Q 94 (149)
Q Consensus 19 ~~V~~ag~eI-~~K-G~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~d-V~lSvP~vIGr~GVe~vl~-l 94 (149)
+.|+++|++| ++| |+|+||||.++++|+++|+.|+ +.++|+|++++|+||++++ +|||+||+||++|++++++ +
T Consensus 69 ~~v~~~g~~ii~~k~g~t~~s~A~a~~~~v~ail~~~--~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~ 146 (174)
T PF02866_consen 69 ERVRKAGYEIIKAKGGSTSYSIAAAAARIVEAILKDE--RRILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDL 146 (174)
T ss_dssp HHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHTTH--TEEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSB
T ss_pred cccEeccceeeeeccccCcCCHHHHHHHHHHHHhhcc--cccccceeccccccCcccccceecceEEEcCCeeEEEeCCC
Confidence 4588999999 988 9999999999999999999997 8999999999999999833 9999999999999999999 9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
+||++|+++|++|++.|++.+++.++
T Consensus 147 ~L~~~E~~~l~~sa~~l~~~i~~~~~ 172 (174)
T PF02866_consen 147 PLSEEEQEKLKESAKELKKEIEKGLE 172 (174)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998875
No 2
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=99.93 E-value=1.2e-25 Score=192.63 Aligned_cols=103 Identities=28% Similarity=0.379 Sum_probs=96.9
Q ss_pred cchhhhhccchhh-cccCc-ceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEec
Q psy17699 16 HKISVVFSAGNDI-KFMLN-TIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVN 93 (149)
Q Consensus 16 ~~~~~V~~ag~eI-~~KG~-T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~ 93 (149)
.-.+.||++|++| ++||+ |+||||+++++|+++||+|+ ++++|+|+|++|+||.+ |+|+|+|++||++|++++++
T Consensus 206 ~i~~~v~~~g~eII~~kG~~t~~~~A~a~a~~~~ail~d~--~~vl~~s~~l~G~yg~~-dv~~gvP~~lg~~Gv~~iie 282 (313)
T COG0039 206 ELIERVRNAGAEIIEAKGAGTYYGPAAALARMVEAILRDE--KRVLPVSVYLDGEYGVE-DVYFGVPAVLGKNGVEEILE 282 (313)
T ss_pred HHHHHHHhhHHHHHHccCccchhhHHHHHHHHHHHHHcCC--CceEEEEEeecCccCcC-CeEEEeeEEEcCCCcEEEec
Confidence 3456799999999 99988 99999999999999999997 79999999999999986 99999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFLTT 121 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~ 121 (149)
++|+++|+++|++|++.||+.++.+..-
T Consensus 283 ~~l~~~E~~~l~~s~~~lk~~i~~~~~~ 310 (313)
T COG0039 283 LLLSDDEQEKLDKSAEELKKNIELVKEL 310 (313)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987653
No 3
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=99.93 E-value=1.1e-25 Score=191.71 Aligned_cols=97 Identities=21% Similarity=0.254 Sum_probs=91.4
Q ss_pred hhhhccchhh-c--ccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCC
Q psy17699 19 SVVFSAGNDI-K--FMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQP 95 (149)
Q Consensus 19 ~~V~~ag~eI-~--~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~ 95 (149)
+.++++|++| + +||+|+||||.++++|+++|++|+ ++++|||++++|+||++ |+|+|+||+||++||+++++++
T Consensus 221 ~~~~~~g~~i~~~~gkg~t~~~ia~a~~~i~~ail~d~--~~v~~vs~~~~g~yg~~-~v~~s~P~~ig~~Gv~~i~~~~ 297 (321)
T PTZ00082 221 ERTRNTGKEIVDLLGTGSAYFAPAAAAIEMAEAYLKDK--KRVLPCSAYLEGQYGHK-DIYMGTPAVIGANGVEKIIELD 297 (321)
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHcCC--CcEEEEEEEecccCCCC-CeEEEEEEEEeCCeEEEEeCCC
Confidence 4588999999 7 589999999999999999999996 89999999999999996 9999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
||++|+++|++|++.||++++.+
T Consensus 298 l~~~E~~~l~~sa~~i~~~~~~~ 320 (321)
T PTZ00082 298 LTPEEQKKFDESIKEVKRLEALL 320 (321)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999987654
No 4
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=99.92 E-value=4e-25 Score=186.69 Aligned_cols=97 Identities=22% Similarity=0.365 Sum_probs=91.0
Q ss_pred hhhhhccchhh-cc--cCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecC
Q psy17699 18 ISVVFSAGNDI-KF--MLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQ 94 (149)
Q Consensus 18 ~~~V~~ag~eI-~~--KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l 94 (149)
.+.++++|++| ++ ||+|+||||+++++|+++|++|+ +.++|||++++|+||++ |+|+|+||+||++||++++++
T Consensus 205 ~~~v~~~g~~ii~~~~kg~t~~~~a~~~~~i~~ai~~~~--~~v~~~s~~~~~~yg~~-~v~~s~P~~ig~~Gv~~i~~~ 281 (305)
T TIGR01763 205 VERTRKGGGEIVNLLKQGSAYYAPAASVVEMVEAILKDR--KRVLPCAAYLDGQYGID-GIYVGVPVILGKNGVEHIYEL 281 (305)
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhCCC--CeEEEEEEEecccCCCC-ceEEEEEEEEeCCeEEEEeCC
Confidence 34589999999 74 88999999999999999999997 78999999999999996 999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
+||++|+++|++|++.||++++.
T Consensus 282 ~l~~~E~~~l~~s~~~i~~~~~~ 304 (305)
T TIGR01763 282 KLDQSELALLNKSAKIVDENCKM 304 (305)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998764
No 5
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=99.92 E-value=4.6e-25 Score=185.95 Aligned_cols=97 Identities=29% Similarity=0.354 Sum_probs=92.3
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.+.++++|++| ++||+|+||||.++++|+++|+.|+ ++++|||++++|+||++ |+|+|+||+||++||+++++++|
T Consensus 210 ~~~v~~~g~~ii~~kg~t~~~~a~a~~~i~~ail~~~--~~v~~~s~~~~g~yg~~-~~~~s~P~~ig~~Gv~~i~~~~L 286 (308)
T cd05292 210 FEEVRNAAYEIIERKGATYYAIGLALARIVEAILRDE--NSVLTVSSLLDGQYGIK-DVALSLPCIVGRSGVERVLPPPL 286 (308)
T ss_pred HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHcCC--CcEEEEEEEEcccCCCC-CEEEEEEEEEeCCceEEecCCCC
Confidence 45688999999 9999999999999999999999996 89999999999999986 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q psy17699 97 TQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
|++|+++|++|++.|++.++.
T Consensus 287 ~~~E~~~l~~s~~~i~~~~~~ 307 (308)
T cd05292 287 SEEEEEALRASAEVLKEAIES 307 (308)
T ss_pred CHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998874
No 6
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=99.92 E-value=4.6e-25 Score=186.29 Aligned_cols=93 Identities=28% Similarity=0.363 Sum_probs=88.6
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.+.|+++|++| ++||+|+||||+++++|+++|++|+ ++++|||++++|+||++ |+|+|+||+||++|++++++++|
T Consensus 206 ~~~v~~~g~~ii~~kG~t~~~~a~a~~~~i~ail~d~--~~v~~~s~~~~g~yg~~-~~~~s~P~~ig~~Gv~~i~~l~L 282 (299)
T TIGR01771 206 EKEVRDAAYEIINRKGATYYGIGMAVARIVEAILHDE--NRVLPVSAYLDGEYGIK-DVYIGVPAVLGRNGVEEIIELPL 282 (299)
T ss_pred HHHHHHHHHHHhhcCCeeeHHHHHHHHHHHHHHHcCC--CcEEEEEEEecccCCCC-CEEEEEEEEEeCCeeEEEccCCC
Confidence 45588999999 9999999999999999999999996 89999999999999997 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy17699 97 TQEEIEKLKKSAQAISQ 113 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~ 113 (149)
|++|+++|++|++.||+
T Consensus 283 ~~~E~~~l~~s~~~ik~ 299 (299)
T TIGR01771 283 SDEEKEAFQKSAETLKK 299 (299)
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 99999999999999974
No 7
>PLN02602 lactate dehydrogenase
Probab=99.92 E-value=7.6e-25 Score=189.26 Aligned_cols=100 Identities=30% Similarity=0.318 Sum_probs=93.8
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCC-ccceEEEeeEEEcCCceeEEecCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGI-EEEVFLSLPCVMADNGVTHIVNQP 95 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi-~~dV~lSvP~vIGr~GVe~vl~l~ 95 (149)
.+.++++|++| ++||+|+||||.++++|+++|++|+ +.++|||++++|+||+ .+++|+|+||+||++||+++++++
T Consensus 248 ~~~v~~~g~eIi~~KG~t~~gia~a~a~ii~ail~d~--~~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l~ 325 (350)
T PLN02602 248 HRAVVDSAYEVIKLKGYTSWAIGYSVASLVRSLLRDQ--RRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNVH 325 (350)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhcC--CCeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEecCC
Confidence 45689999999 9999999999999999999999997 7999999999999998 249999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
||++|+++|++|++.||+++++++
T Consensus 326 L~~~E~~~l~~sa~~l~~~~~~~~ 349 (350)
T PLN02602 326 LTDEEAERLRKSAKTLWEVQSQLG 349 (350)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999988753
No 8
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=99.92 E-value=1.7e-24 Score=184.59 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=95.0
Q ss_pred hhhhhccchhh-cccCcceeeHH-HHHHHHHHhhhcCCCCCeEEEeeeecc--CcCCCccceEEEeeEEEcCCceeEEec
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPR-GGLTHNIQVPLLDFDSNVESCEKSKSE--GHHGIEEEVFLSLPCVMADNGVTHIVN 93 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA-~aia~IveaIL~D~de~~IlpvS~~l~--G~YGi~~dV~lSvP~vIGr~GVe~vl~ 93 (149)
.+.|+++|++| ++||+|+|||+ +++++|+++|++|+|+++++|||++++ |+||+++|+|+|+||+||++|++++++
T Consensus 203 ~~~v~~~g~~Ii~~kg~t~~~~~a~ai~~iv~ail~~~~~~~i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive 282 (313)
T TIGR01756 203 FEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWLFGTRPGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVE 282 (313)
T ss_pred HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHHHhcCCCCCeEEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcC
Confidence 46789999999 99999999988 599999999999776789999999996 399995599999999999999999999
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17699 94 -QPLTQEEIEKLKKSAQAISQDYMYFLTT 121 (149)
Q Consensus 94 -l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~ 121 (149)
++|+++|+++|++|++.|++--+.+++.
T Consensus 283 ~l~L~~~E~~~l~~Sa~~l~~e~~~~~~~ 311 (313)
T TIGR01756 283 NFELNPWLKTKLAQTEKDLFEERETALKA 311 (313)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887777653
No 9
>PTZ00117 malate dehydrogenase; Provisional
Probab=99.92 E-value=1.3e-24 Score=184.39 Aligned_cols=100 Identities=20% Similarity=0.256 Sum_probs=93.8
Q ss_pred hhhhhccchhh-cc--cCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecC
Q psy17699 18 ISVVFSAGNDI-KF--MLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQ 94 (149)
Q Consensus 18 ~~~V~~ag~eI-~~--KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l 94 (149)
.+.++++|++| ++ ||+|+||||.++++|+++|++|+ +.++|||++++|+||++ |+|||+||+||++||++++++
T Consensus 214 ~~~v~~~g~~ii~~~~kg~t~~~~a~a~~~~~~ail~~~--~~v~~~s~~~~g~yg~~-~~~~s~P~~ig~~Gv~~i~~l 290 (319)
T PTZ00117 214 IKKTRNMGGEIVKLLKKGSAFFAPAAAIVAMIEAYLKDE--KRVLVCSVYLNGQYNCK-NLFVGVPVVIGGKGIEKVIEL 290 (319)
T ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCC--CeEEEEEEEeccccCCC-CeEEEEEEEEeCCeEEEEeCC
Confidence 44689999999 74 99999999999999999999996 79999999999999997 999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
+||++|+++|++|++.||+.+++++.
T Consensus 291 ~l~~~E~~~l~~s~~~l~~~~~~~~~ 316 (319)
T PTZ00117 291 ELNAEEKELFDKSIESIQELTQKAKA 316 (319)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887653
No 10
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=99.92 E-value=1.2e-24 Score=185.47 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=93.2
Q ss_pred hhhhccchhh-c-ccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 19 SVVFSAGNDI-K-FMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 19 ~~V~~ag~eI-~-~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
+.++++|++| + +||+|+||||.++++|+++|++|++++.++|||++++|+||+.+|+|+|+||+||++||+++++++|
T Consensus 223 ~~v~~~g~~Ii~~~~g~t~~~~a~~~~~i~~ail~~~~~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~~L 302 (325)
T cd01336 223 STVQKRGAAVIKARKLSSAMSAAKAICDHVHDWWFGTPEGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGLSI 302 (325)
T ss_pred HHHHhhHHHHHHccccchHHHHHHHHHHHHHHHHcCCCCCeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCCCC
Confidence 5689999999 7 4789999999999999999999965589999999999999994499999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
|++|+++|++|++.|++.++.+
T Consensus 303 ~~~E~~~l~~s~~~l~~e~~~~ 324 (325)
T cd01336 303 DDFSREKIDATAKELVEEKETA 324 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988764
No 11
>PLN00135 malate dehydrogenase
Probab=99.91 E-value=1.6e-24 Score=184.59 Aligned_cols=105 Identities=14% Similarity=0.161 Sum_probs=96.7
Q ss_pred hhhhhccchhh-cc-cCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCC
Q psy17699 18 ISVVFSAGNDI-KF-MLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQP 95 (149)
Q Consensus 18 ~~~V~~ag~eI-~~-KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~ 95 (149)
.+.++.+|++| ++ ||+|+||||.++++|+++|++++|+++++|||++++|+||+.+|+|+|+||++|++|++++++++
T Consensus 202 ~~~v~~~g~~Ii~~~kg~t~~~ia~a~~~iv~ai~~~~~~~~v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l~ 281 (309)
T PLN00135 202 ITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGLS 281 (309)
T ss_pred HHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhCCcCCeEEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecCCC
Confidence 46689999999 75 89999999999999999999954458999999999999999349999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
|+++|+++|++|++.||+..+.+++++
T Consensus 282 L~~~E~~~l~~S~~~lk~~~~~~~~~~ 308 (309)
T PLN00135 282 IDEFSRKKMDATAKELKEEKELAYSCL 308 (309)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999887764
No 12
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=99.91 E-value=1.2e-24 Score=182.55 Aligned_cols=97 Identities=28% Similarity=0.327 Sum_probs=92.2
Q ss_pred chhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCC
Q psy17699 17 KISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQP 95 (149)
Q Consensus 17 ~~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~ 95 (149)
-.+.++++|++| ++||+|+||||+++++|+++|++|+ +.++|||++++|+||.+ |+|+|+||+||++|++++++++
T Consensus 208 ~~~~v~~~g~~ii~~kg~t~~~~a~a~~~~~~ail~~~--~~v~~~s~~~~g~yg~~-~v~~s~P~~ig~~Gv~~i~~~~ 284 (306)
T cd05291 208 IEEDVRKAGYEIINGKGATYYGIATALARIVKAILNDE--NAILPVSAYLDGEYGEK-DVYIGVPAIIGRNGVEEVIELD 284 (306)
T ss_pred HHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHcCC--CEEEEEEEEeccccCCC-CEEEEEEEEEeCCCEEEEECCC
Confidence 456689999999 9999999999999999999999996 89999999999999975 9999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q psy17699 96 LTQEEIEKLKKSAQAISQDYM 116 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~ 116 (149)
||++|+++|++|++.|+++++
T Consensus 285 l~~~E~~~l~~s~~~l~~~~~ 305 (306)
T cd05291 285 LTEEEQEKFEKSADIIKENIK 305 (306)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999875
No 13
>PTZ00325 malate dehydrogenase; Provisional
Probab=99.91 E-value=4.8e-24 Score=182.46 Aligned_cols=100 Identities=17% Similarity=0.077 Sum_probs=91.5
Q ss_pred hhhhccchhh-ccc---CcceeeHHHHHHHHHHhhhcC-CCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEec
Q psy17699 19 SVVFSAGNDI-KFM---LNTIEGPRGGLTHNIQVPLLD-FDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVN 93 (149)
Q Consensus 19 ~~V~~ag~eI-~~K---G~T~ygiA~aia~IveaIL~D-~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~ 93 (149)
+.|+++|++| ++| |+|+||||.++++|+++|++| .|++.++|++ +++|+||.+ |+|+|+||+||++||+++++
T Consensus 210 ~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~ail~~~~~~~~v~~~~-~~~g~yg~~-~v~~s~P~~ig~~Gv~~i~~ 287 (321)
T PTZ00325 210 HRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTSVLKALRGDKGIVECA-FVESDMRPE-CPFFSSPVELGKEGVERVLP 287 (321)
T ss_pred HHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhcCCCCCeEEEE-EEecCCCCC-CeEEEEEEEEcCCeeEEEcC
Confidence 5589999999 755 899999999999999999977 4458899995 999999986 99999999999999999999
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 94 -QPLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 94 -l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
++||++|+++|++|++.|++++++.++
T Consensus 288 ~~~L~~~E~~~l~~S~~~i~~~~~~~~~ 315 (321)
T PTZ00325 288 IGPLNAYEEELLEAAVPDLKKNIEKGLE 315 (321)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999987665
No 14
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=99.90 E-value=9.6e-24 Score=180.14 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=92.9
Q ss_pred hhhhhccchhh-cccCcceeeHHH-HHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRG-GLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQP 95 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~-aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~ 95 (149)
.+.++++|++| ++||+|+||||+ ++++|+++|++|++.+.++|||++++|+||+++|+|+|+|++||++||+++++++
T Consensus 218 ~~~v~~~g~~Ii~~kG~t~~~~~a~a~~~iv~ail~~~~~~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l~ 297 (322)
T cd01338 218 IPTVQKRGAAIIKARGASSAASAANAAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGLE 297 (322)
T ss_pred HHHHHhhHHHHHhCcCCccHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCCC
Confidence 34589999999 999999999995 9999999999997335999999999999999449999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
||++|+++|++|++.|++.-+++
T Consensus 298 L~~~E~~~l~~s~~~l~~~~~~~ 320 (322)
T cd01338 298 IDDFAREKIDATLAELLEEREAV 320 (322)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987654
No 15
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=99.90 E-value=4.7e-24 Score=181.04 Aligned_cols=95 Identities=31% Similarity=0.347 Sum_probs=90.3
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.+.|+++|++| ++||+|+||||.++++|+++|+.|+ +.++|+|++++|+||.+ |+|+|+||+||++|++++++++|
T Consensus 211 ~~~v~~~g~~Ii~~KG~t~~~ia~a~~~ii~ail~d~--~~v~~vsv~~~G~yg~~-~v~~svP~~ig~~Gv~~i~~l~L 287 (307)
T cd05290 211 LEEVVQAAYDVFNRKGWTNAGIAKSASRLIKAILLDE--RSILPVCTLLSGEYGLS-DVALSLPTVIGAKGIERVLEIPL 287 (307)
T ss_pred HHHHHHHHHHHHHccCeehHHHHHHHHHHHHHHHhCC--CeEEEEEEeeCCccCCC-CEEEEEEEEEeCCCceEecCCCC
Confidence 35589999999 9999999999999999999999996 79999999999999975 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy17699 97 TQEEIEKLKKSAQAISQDY 115 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i 115 (149)
|++|+++|++|++.|++.+
T Consensus 288 ~~~E~~~l~~s~~~i~~~~ 306 (307)
T cd05290 288 DEWELEKLHKSAKAIRETI 306 (307)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 16
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=99.90 E-value=7.6e-24 Score=181.12 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=91.3
Q ss_pred hhhhccchhh-cccCcceee-HHHHHHHHHHhhhcCCCCCeEEEeeeeccC-cCCCccceEEEeeEEEcCCceeEEec-C
Q psy17699 19 SVVFSAGNDI-KFMLNTIEG-PRGGLTHNIQVPLLDFDSNVESCEKSKSEG-HHGIEEEVFLSLPCVMADNGVTHIVN-Q 94 (149)
Q Consensus 19 ~~V~~ag~eI-~~KG~T~yg-iA~aia~IveaIL~D~de~~IlpvS~~l~G-~YGi~~dV~lSvP~vIGr~GVe~vl~-l 94 (149)
+.++++|++| ++||+|+|| +|.++++|+++|++|++.++++|||++++| +||+++|+|||+||+|||+|++++++ +
T Consensus 220 ~~v~~~g~~Ii~~kG~t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l 299 (323)
T TIGR01759 220 PTVQQRGAAVIEARGASSAASAANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGL 299 (323)
T ss_pred HHHHhhHHHHHhccCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCC
Confidence 4589999999 999999996 668999999999999633789999999999 99994499999999999999999999 9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
+||++|+++|++|++.|++.+++
T Consensus 300 ~L~~~E~~~l~~sa~~lk~~~~~ 322 (323)
T TIGR01759 300 PLDDFVRGKLDATEDELLEEKEE 322 (323)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998764
No 17
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=99.90 E-value=9e-24 Score=179.50 Aligned_cols=97 Identities=34% Similarity=0.484 Sum_probs=92.1
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.+.|+++|++| ++||+|+||||.++++|+++|++|+ +.++|+|++++|+||+.+|+|+|+||+||++|++++++++|
T Consensus 214 ~~~v~~~g~~Ii~~kg~t~~~~a~a~~~ii~ail~d~--~~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l~L 291 (312)
T cd05293 214 HKQVVDSAYEVIKLKGYTSWAIGLSVADLVDAILRNT--GRVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQPL 291 (312)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHcCC--CeEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecCCC
Confidence 35689999999 9999999999999999999999996 79999999999999995599999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q psy17699 97 TQEEIEKLKKSAQAISQDYM 116 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~ 116 (149)
|++|+++|++|++.|+++++
T Consensus 292 ~~~E~~~l~~s~~~i~~~~~ 311 (312)
T cd05293 292 TEEEQEKLQKSADTLWEVQK 311 (312)
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999875
No 18
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=99.90 E-value=1.3e-23 Score=179.43 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=91.5
Q ss_pred hhhhccchhh-cccCcceee-HHHHHHHHHHhhhcCCCCCeEEEeeeeccCcC-CCccceEEEeeEEEcCCceeEEecCC
Q psy17699 19 SVVFSAGNDI-KFMLNTIEG-PRGGLTHNIQVPLLDFDSNVESCEKSKSEGHH-GIEEEVFLSLPCVMADNGVTHIVNQP 95 (149)
Q Consensus 19 ~~V~~ag~eI-~~KG~T~yg-iA~aia~IveaIL~D~de~~IlpvS~~l~G~Y-Gi~~dV~lSvP~vIGr~GVe~vl~l~ 95 (149)
+.++++|++| ++||+|+|| ||.++++|+++|++|++.+.++|||++++|+| |+++|+|+|+||+||++||+++++++
T Consensus 220 ~~v~~~~~~Ii~~kg~t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l~ 299 (323)
T cd00704 220 KTVQKRGAAIIKKRGASSAASAAKAIADHVKDWLFGTPPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDLK 299 (323)
T ss_pred HHHHhhHHHHHhccCcchhHHHHHHHHHHHHHHHhCCCCCcEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCCC
Confidence 5689999999 999999998 69999999999999972228999999999999 99449999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
|+++|+++|++|++.||+.-+.+
T Consensus 300 L~~~E~~~l~~s~~~l~~~~~~~ 322 (323)
T cd00704 300 LNDWLREKLKATEEELIEEKEIA 322 (323)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999876543
No 19
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=99.90 E-value=2e-23 Score=177.98 Aligned_cols=101 Identities=14% Similarity=0.048 Sum_probs=90.3
Q ss_pred hhhhhccchhh-cc---cCcceeeHHHHHHHHHHhhhcC-CCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEe
Q psy17699 18 ISVVFSAGNDI-KF---MLNTIEGPRGGLTHNIQVPLLD-FDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIV 92 (149)
Q Consensus 18 ~~~V~~ag~eI-~~---KG~T~ygiA~aia~IveaIL~D-~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl 92 (149)
.+.|+++|++| ++ ||+|+||||.++++|+++|+++ .|+++++|+| +++|+||.+ |+|+|+||+||++||++++
T Consensus 202 ~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~~~d~~~v~~~s-~~~g~yg~~-~v~~s~P~~ig~~Gv~~i~ 279 (312)
T TIGR01772 202 IHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRGLKGEEGVVECA-YVESDGVTE-ATFFATPLLLGKNGVEKRL 279 (312)
T ss_pred HHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHhhCCCccEEEEE-EEccCCCcC-ceEEEEEEEEcCCeeEEEE
Confidence 35689999999 74 7999999999999999999963 2248999955 999999986 9999999999999999999
Q ss_pred cC-CCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 93 NQ-PLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 93 ~l-~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
++ +||++|+++|++|++.|++++++-.+
T Consensus 280 ~~~~L~~~E~~~l~~S~~~i~~~~~~g~~ 308 (312)
T TIGR01772 280 GIGKLSSFEEKMLNGALPELKKNIKKGEE 308 (312)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999999886543
No 20
>KOG1495|consensus
Probab=99.90 E-value=6.8e-24 Score=180.32 Aligned_cols=96 Identities=32% Similarity=0.444 Sum_probs=92.2
Q ss_pred hhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCCCHH
Q psy17699 21 VFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQE 99 (149)
Q Consensus 21 V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~Ls~e 99 (149)
|..++||| +.||+|+||||.++++|+++|++|. +++.|||+.++|.||+++|||||+||++|++|+..+++.+||++
T Consensus 234 v~~sayeviklKGyTswaIglsva~l~~ail~n~--~~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~~Lt~~ 311 (332)
T KOG1495|consen 234 VVDSAYEVIKLKGYTSWAIGLSVADLAQAILRNL--RRIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQKLTDE 311 (332)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCc--CceeeeeeccccccCCCCceEEecceeecCCchhhhhcccCCHH
Confidence 77889999 9999999999999999999999997 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy17699 100 EIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 100 Eqe~L~~Sa~~Ik~~i~~~ 118 (149)
|+++|++||+.|.+..+++
T Consensus 312 E~akL~kSa~tl~~~q~~l 330 (332)
T KOG1495|consen 312 EVAKLKKSAKTLLEAQKSL 330 (332)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999987654
No 21
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=99.90 E-value=2.7e-23 Score=176.46 Aligned_cols=98 Identities=26% Similarity=0.272 Sum_probs=92.8
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.+.++++|++| ++||+|+||||.++++|+++|++|+ +.++|+|++++|+||.+ ++|+|+||+||++||+++++++|
T Consensus 215 ~~~v~~~g~~ii~~kg~t~~~~a~~~~~i~~ail~~~--~~v~~~sv~~~g~yg~~-~v~~S~Pv~ig~~Gv~~i~~l~L 291 (315)
T PRK00066 215 FENVRDAAYEIIEKKGATYYGIAMALARITKAILNNE--NAVLPVSAYLEGQYGEE-DVYIGVPAVVNRNGIREIVELPL 291 (315)
T ss_pred HHHHHHHHHHHHhcCCeehHHHHHHHHHHHHHHHcCC--CeEEEEEEEeccccCCC-CEEEEeEEEEeCCcEEEEcCCCC
Confidence 45588899999 9999999999999999999999996 79999999999999975 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
|++|+++|++|++.|++.++++
T Consensus 292 ~~~E~~~L~~s~~~l~~~~~~~ 313 (315)
T PRK00066 292 NDDEKQKFAHSADVLKEIMDEA 313 (315)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998865
No 22
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=99.90 E-value=2.3e-23 Score=175.08 Aligned_cols=95 Identities=33% Similarity=0.405 Sum_probs=90.3
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.+.++++|++| ++||+|+||||.++++|+++|++|+ +.++|||++++|+||.+ ++|+|+||++|++|++++++++|
T Consensus 204 ~~~v~~~~~~ii~~kg~t~~~~a~a~~~~~~ai~~~~--~~v~~~s~~~~g~yg~~-~~~~s~Pv~ig~~Gi~~i~~l~L 280 (300)
T cd00300 204 EEEVRTSGYEIIRLKGATNYGIATAIADIVKSILLDE--RRVLPVSAVQEGQYGIE-DVALSVPAVVGREGVVRILEIPL 280 (300)
T ss_pred HHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHcCC--CeEEEEEEEecCccCCC-CEEEEEEEEEeCCCeEEEecCCC
Confidence 35688999999 9999999999999999999999996 89999999999999975 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy17699 97 TQEEIEKLKKSAQAISQDY 115 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i 115 (149)
|++|+++|++|++.|++.+
T Consensus 281 ~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd00300 281 TEDEEAKLQKSAEALKEVL 299 (300)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 23
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=99.89 E-value=3.6e-23 Score=172.78 Aligned_cols=94 Identities=24% Similarity=0.386 Sum_probs=89.1
Q ss_pred hhhhccchhh-ccc--CcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCC
Q psy17699 19 SVVFSAGNDI-KFM--LNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQP 95 (149)
Q Consensus 19 ~~V~~ag~eI-~~K--G~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~ 95 (149)
+.++.+|++| +.| |+|+||||+++++|+++|++|+ +.++|||++++|+||++ |+|+|+||+||++|++++++++
T Consensus 203 ~~v~~~~~~ii~~k~~g~t~~~~a~~~~~i~~ail~~~--~~i~~~s~~~~g~yg~~-~~~~s~P~~ig~~G~~~~~~l~ 279 (300)
T cd01339 203 ERTRNGGAEIVNLLKTGSAYYAPAAAIAEMVEAILKDK--KRVLPCSAYLEGEYGIK-DIFVGVPVVLGKNGVEKIIELD 279 (300)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHcCC--CcEEEEEEEeccccCCC-CeEEEEEEEEeCCeEEEEeCCC
Confidence 5688999999 754 9999999999999999999996 79999999999999997 9999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q psy17699 96 LTQEEIEKLKKSAQAISQDY 115 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i 115 (149)
||++|+++|++|++.|++.+
T Consensus 280 l~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd01339 280 LTDEEKEAFDKSVESVKELI 299 (300)
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 24
>PRK05442 malate dehydrogenase; Provisional
Probab=99.89 E-value=1.1e-22 Score=174.22 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=91.0
Q ss_pred hhhhccchhh-cccCcceeeHHHH-HHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEec-CC
Q psy17699 19 SVVFSAGNDI-KFMLNTIEGPRGG-LTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVN-QP 95 (149)
Q Consensus 19 ~~V~~ag~eI-~~KG~T~ygiA~a-ia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~-l~ 95 (149)
+.++++|++| ++||+|+||||++ +++|+++|++|..+++++|||++++|+||+++|+|+|+||+|| +|++++++ ++
T Consensus 221 ~~v~~~g~~Ii~~kG~t~~~~a~~~~~~iv~ail~~~~~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l~ 299 (326)
T PRK05442 221 PTVQKRGAAIIEARGASSAASAANAAIDHVRDWVLGTPEGDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGLE 299 (326)
T ss_pred HHHHhhHHHHHhCcCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCCC
Confidence 4589999999 9999999999999 5999999999921279999999999999994499999999999 99999966 99
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
||++|+++|++|++.|++..+.+.
T Consensus 300 L~~~E~~~l~~s~~~l~~~~~~~~ 323 (326)
T PRK05442 300 IDDFSREKIDATLAELEEERDAVK 323 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999877654
No 25
>PRK05086 malate dehydrogenase; Provisional
Probab=99.88 E-value=1.9e-22 Score=171.04 Aligned_cols=99 Identities=14% Similarity=0.073 Sum_probs=89.6
Q ss_pred hhhhccchhh-ccc---CcceeeHHHHHHHHHHhhhcC-CCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEec
Q psy17699 19 SVVFSAGNDI-KFM---LNTIEGPRGGLTHNIQVPLLD-FDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVN 93 (149)
Q Consensus 19 ~~V~~ag~eI-~~K---G~T~ygiA~aia~IveaIL~D-~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~ 93 (149)
+.|+++|++| ++| |+|+||||.++++|+++|++| .|+++++|+| +++|+ |.. |+|+|+||+||++|++++++
T Consensus 204 ~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai~~~~~~~~~v~~~~-~~~~~-g~~-~v~~s~P~~ig~~Gv~~i~~ 280 (312)
T PRK05086 204 KRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECA-YVEGD-GKY-ARFFAQPVLLGKNGVEERLP 280 (312)
T ss_pred HHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHHhcCCCCCcEEEEE-EEecc-CCc-ceEEEEEEEEcCCeeEEEcC
Confidence 5689999999 866 999999999999999999977 4458899976 88987 875 99999999999999999999
Q ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 94 Q-PLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 94 l-~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
+ +|+++|+++|++|++.|++.+++-.+
T Consensus 281 ~~~L~~~E~~~l~~s~~~i~~~~~~g~~ 308 (312)
T PRK05086 281 IGTLSAFEQNALEGMLDTLKKDIALGEE 308 (312)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999999887543
No 26
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=99.88 E-value=1.7e-22 Score=170.83 Aligned_cols=97 Identities=23% Similarity=0.325 Sum_probs=91.7
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcC-CCccceEEEeeEEEcCCceeEEecCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHH-GIEEEVFLSLPCVMADNGVTHIVNQP 95 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~Y-Gi~~dV~lSvP~vIGr~GVe~vl~l~ 95 (149)
.+.|+.+|++| ++||+|+||||.++++|+++|++|+ +.++|||++++|+| |++ |+|+|+||+||++|++++++++
T Consensus 210 ~~~v~~~g~~i~~~kg~t~~~~a~~~~~ii~ail~~~--~~v~~vsv~~~g~~~~~~-~~~~svP~~ig~~Gv~~i~~l~ 286 (309)
T cd05294 210 VETVKNAGQNIISLKGGSEYGPASAISNLVRTIANDE--RRILTVSTYLEGEIDGIR-DVCIGVPVKLGKNGIEEIVPIE 286 (309)
T ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHCCC--CeEEEEEEEECCccCCCC-CeEEEeEEEEcCCccEEEeCCC
Confidence 34589999999 9999999999999999999999997 79999999999998 997 9999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
||++|+++|++|++.||+.++.
T Consensus 287 l~~~E~~~l~~s~~~i~~~~~~ 308 (309)
T cd05294 287 MDDDEREAFRKSAEIVKKYTRE 308 (309)
T ss_pred CCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998764
No 27
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=99.88 E-value=2.6e-22 Score=171.44 Aligned_cols=102 Identities=15% Similarity=0.155 Sum_probs=90.8
Q ss_pred hhhhhccchhh-ccc-CcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCc-CCCccceEEEeeEEEcCCceeEEecC
Q psy17699 18 ISVVFSAGNDI-KFM-LNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGH-HGIEEEVFLSLPCVMADNGVTHIVNQ 94 (149)
Q Consensus 18 ~~~V~~ag~eI-~~K-G~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~-YGi~~dV~lSvP~vIGr~GVe~vl~l 94 (149)
.+.++++|++| ++| |+|.||||.++++|+++|+.+.|++.++|||++++|+ ||+++|+|+|+||+||++|++.+.++
T Consensus 219 ~~~v~~~g~~Ii~~k~~~t~~~ia~~~~~i~~ai~~~~~~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el 298 (324)
T TIGR01758 219 ITTVQQRGAAIIRARKLSSALSAAKAAVDQMHDWVLGTPEGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGL 298 (324)
T ss_pred HHHHHhCHHHHHhccCCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCC
Confidence 34589999999 755 5999999999999999999433358999999999999 99944999999999998888888889
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
+||++|+++|++|++.||+.++.++
T Consensus 299 ~L~~~E~~~l~~s~~~lk~~~~~~~ 323 (324)
T TIGR01758 299 CVDDSSRKKLALTAKELEEERDEAL 323 (324)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988764
No 28
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=99.87 E-value=3.6e-22 Score=170.27 Aligned_cols=99 Identities=13% Similarity=0.035 Sum_probs=87.3
Q ss_pred hhhhhccchhh-cc---cCcceeeHHHHHHHHHHhhhcC-CCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEe
Q psy17699 18 ISVVFSAGNDI-KF---MLNTIEGPRGGLTHNIQVPLLD-FDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIV 92 (149)
Q Consensus 18 ~~~V~~ag~eI-~~---KG~T~ygiA~aia~IveaIL~D-~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl 92 (149)
.+.|+++|++| ++ ||+|+||||.++++|+++|++| .+++.++|+| +++|+ |.+ |+|+|+||+||++||++++
T Consensus 203 ~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl~~~~~~~~~~~~s-~~~~~-g~~-~v~~s~P~~ig~~Gv~~i~ 279 (310)
T cd01337 203 THRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLRGLKGEKGVIECA-YVESD-VTE-APFFATPVELGKNGVEKNL 279 (310)
T ss_pred HHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHHHhcCCCcceEEEE-EEecc-CCC-ceEEEEEEEEeCCeEEEEe
Confidence 35689999999 75 6999999999999999999977 3446788887 88876 775 9999999999999999999
Q ss_pred cC-CCCHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 93 NQ-PLTQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 93 ~l-~Ls~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
++ +||++|+++|++|++.||+.+++-.
T Consensus 280 ~l~~L~~~E~~~l~~S~~~i~~~~~~g~ 307 (310)
T cd01337 280 GLGKLNDYEKKLLEAALPELKKNIEKGV 307 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 99 6999999999999999999887543
No 29
>PLN00106 malate dehydrogenase
Probab=99.86 E-value=1.3e-21 Score=167.54 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=85.0
Q ss_pred hhhhhccchhh-cc---cCcceeeHHHHHHHHHHhhhcCC-CCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEe
Q psy17699 18 ISVVFSAGNDI-KF---MLNTIEGPRGGLTHNIQVPLLDF-DSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIV 92 (149)
Q Consensus 18 ~~~V~~ag~eI-~~---KG~T~ygiA~aia~IveaIL~D~-de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl 92 (149)
.+.|+++|++| ++ ||+|+||||.++++|+++|++|. |++.++||| +++++| .+++|+|+||+||++|+++++
T Consensus 221 ~~~v~~~g~~Ii~~k~~kg~t~~~~a~a~~~ii~ail~~~~~~~~v~~~s-~~~~~~--~~~v~~s~P~~ig~~Gv~~i~ 297 (323)
T PLN00106 221 TKRIQNGGTEVVEAKAGAGSATLSMAYAAARFADACLRGLNGEADVVECS-YVQSEV--TELPFFASKVRLGRNGVEEVL 297 (323)
T ss_pred HHHHHHHHHHHHhCccCCCCchHHHHHHHHHHHHHHHhccCCCceEEEEE-EECccc--CCceEEEEEEEEcCCeeEEEc
Confidence 45689999999 74 79999999999999999999973 257999999 667765 213999999999999999999
Q ss_pred cC-CCCHHHHHHHHHHHHHHHHHHH
Q psy17699 93 NQ-PLTQEEIEKLKKSAQAISQDYM 116 (149)
Q Consensus 93 ~l-~Ls~eEqe~L~~Sa~~Ik~~i~ 116 (149)
++ +||++|+++|++|++.|++.++
T Consensus 298 ~~~~L~~~E~~~l~~S~~~i~~~~~ 322 (323)
T PLN00106 298 GLGPLSEYEQKGLEALKPELKASIE 322 (323)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99 9999999999999999998865
No 30
>PRK06223 malate dehydrogenase; Reviewed
Probab=99.85 E-value=3.1e-21 Score=160.63 Aligned_cols=98 Identities=20% Similarity=0.293 Sum_probs=91.6
Q ss_pred hhhhhccchhh-c--ccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecC
Q psy17699 18 ISVVFSAGNDI-K--FMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQ 94 (149)
Q Consensus 18 ~~~V~~ag~eI-~--~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l 94 (149)
.+.++..|++| + +||+|+|++|.++++++++|+.|+ +.++|+|++++|+||++ |+++|+||+||++|+++++++
T Consensus 206 ~~~v~~~~~~ii~~~~kg~t~~~~A~~~~~ii~ail~~~--~~~~~~~v~~~g~yg~~-~~~~s~P~~i~~~Gv~~i~~~ 282 (307)
T PRK06223 206 VERTRKGGAEIVGLLKTGSAYYAPAASIAEMVEAILKDK--KRVLPCSAYLEGEYGVK-DVYVGVPVKLGKNGVEKIIEL 282 (307)
T ss_pred HHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHcCC--CcEEEEEEEecCcCCCC-CeEEEeEEEEeCCeEEEEeCC
Confidence 35588889999 7 499999999999999999999996 79999999999999995 999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
+||++|+++|++|++.|++.++++
T Consensus 283 ~l~~~e~~~l~~s~~~l~~~~~~~ 306 (307)
T PRK06223 283 ELDDEEKAAFDKSVEAVKKLIEAL 306 (307)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998754
No 31
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=99.85 E-value=5.6e-21 Score=167.57 Aligned_cols=101 Identities=15% Similarity=0.188 Sum_probs=91.6
Q ss_pred hhhhhccchhh-cccCccee-eHHHHHHHHHHhhh--cCCCCCeEEEeeeeccCc-CCCccceEEEeeEEEcCCceeEEe
Q psy17699 18 ISVVFSAGNDI-KFMLNTIE-GPRGGLTHNIQVPL--LDFDSNVESCEKSKSEGH-HGIEEEVFLSLPCVMADNGVTHIV 92 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~y-giA~aia~IveaIL--~D~de~~IlpvS~~l~G~-YGi~~dV~lSvP~vIGr~GVe~vl 92 (149)
.+.|+++|++| ++||+|+| ++|.++++++++++ .|+ ++++|+|++++|+ ||+.+|+|+|+||+||++|+++++
T Consensus 260 ~~~v~~~g~eIi~~KG~t~~~s~a~ai~~~i~ai~~g~d~--~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv 337 (387)
T TIGR01757 260 TPTVQKRGGALIKKWGRSSAASTAVSIADAIKSLVVPTPE--GDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELA 337 (387)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC--CeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEEC
Confidence 34589999999 99998888 99999999999999 775 8999999999996 998449999999999999999996
Q ss_pred -cCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 93 -NQPLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 93 -~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
+++||++|+++|++|++.|++--+.+++
T Consensus 338 ~~l~L~~~E~~~l~~Sa~~L~~e~~~~~~ 366 (387)
T TIGR01757 338 TDVSMDDFLRERIRKSEDELLKEKECVAH 366 (387)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887766655
No 32
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=99.84 E-value=1.2e-20 Score=167.92 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=89.6
Q ss_pred hhhhhccchhh-cccCccee-eHHHHHHHHHHhhhcCCCCCeEEEeeeeccC-cCCCccceEEEeeEEEcCCceeEEe-c
Q psy17699 18 ISVVFSAGNDI-KFMLNTIE-GPRGGLTHNIQVPLLDFDSNVESCEKSKSEG-HHGIEEEVFLSLPCVMADNGVTHIV-N 93 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~y-giA~aia~IveaIL~D~de~~IlpvS~~l~G-~YGi~~dV~lSvP~vIGr~GVe~vl-~ 93 (149)
.+.|+++|++| ++||+|+| ++|.++++++++|+...|++.++|||++++| +||+.+|+|+|+||+||++|+++++ +
T Consensus 316 ~~~v~~~g~~Ii~~kG~t~~~s~a~ai~~~I~ail~~~d~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~e 395 (444)
T PLN00112 316 TPKVQKRGGVLIKKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKD 395 (444)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCC
Confidence 35589999999 99999888 9999999999999933334899999999999 5997449999999999999999999 7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
++||++|+++|++|++.|++--+.+
T Consensus 396 l~L~~~E~~~l~~Sa~~L~~e~~~~ 420 (444)
T PLN00112 396 VEIDDYLRERIKKSEAELLAEKRCV 420 (444)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765544
No 33
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=99.80 E-value=2.3e-19 Score=160.18 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=88.3
Q ss_pred hhhhhccchhhcccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCCC
Q psy17699 18 ISVVFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLT 97 (149)
Q Consensus 18 ~~~V~~ag~eI~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~Ls 97 (149)
.+.|++.|+ .+||+|+||+|.|+++++++++.|+.++.++|||++++|+||+++|+|+|+||++|++|++.+++++||
T Consensus 352 ~~~v~~rg~--~rkgsT~~siA~A~~~iv~ail~~t~~~~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~L~L~ 429 (452)
T cd05295 352 VATLKSLSS--SLNHEAAISPAHAIATTLSYWYHGSPPGEIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTDLELS 429 (452)
T ss_pred HHHHHHHHH--hccCChHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeCCCCC
Confidence 345666666 789999999999999999999999744799999999999999966999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17699 98 QEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 98 ~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
++|+++|++|++.|.+--+.
T Consensus 430 e~E~~kL~~S~~eL~~E~~~ 449 (452)
T cd05295 430 EILREVLKRITSDLIQEKLV 449 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999875443
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=99.68 E-value=2.6e-16 Score=129.16 Aligned_cols=76 Identities=29% Similarity=0.432 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCCCHHHHHHHHHHHHHHHHHH
Q psy17699 38 PRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDY 115 (149)
Q Consensus 38 iA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i 115 (149)
+|.++++|+++|++|+ +.++|+|++.+|+||+.+|+++|+||+||++|++++++++|+++|+++|++|++.++.++
T Consensus 187 ~a~~~~~ii~ai~~~~--~~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~~l~~~e~~~l~~s~~~~~~~~ 262 (263)
T cd00650 187 IATSIADLIRSLLNDE--GEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEVGLTDFELEKLQKSADTLKKEL 262 (263)
T ss_pred HHHHHHHHHHHHHcCC--CEEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecCCCCHHHHHHHHHHHHHHHHHh
Confidence 8999999999999996 799999999999999656999999999999999999999999999999999999999875
No 35
>KOG1494|consensus
Probab=99.10 E-value=4.4e-10 Score=96.82 Aligned_cols=100 Identities=11% Similarity=0.067 Sum_probs=83.5
Q ss_pred hhhhhccchhh-c---ccCcceeeHHHHHHHHHHhhhcCC-CCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEe
Q psy17699 18 ISVVFSAGNDI-K---FMLNTIEGPRGGLTHNIQVPLLDF-DSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIV 92 (149)
Q Consensus 18 ~~~V~~ag~eI-~---~KG~T~ygiA~aia~IveaIL~D~-de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl 92 (149)
...++++|.|| + ++|+++..+|.|.++++.++|+.- ++..+.-||-+....++++ ||+.|+.+|++||++++
T Consensus 232 t~RiQ~gGtEVV~AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~~---fFaspv~Lg~~Gv~~v~ 308 (345)
T KOG1494|consen 232 THRIQNGGTEVVKAKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASPVTELP---FFATPVTLGKKGVEEVL 308 (345)
T ss_pred HHHHHhCCceEEEeccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEeccccCcc---ceeceEEecCCceeeec
Confidence 45688999999 5 679999999999999999988742 1245666665544446765 99999999999999999
Q ss_pred cC-CCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 93 NQ-PLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 93 ~l-~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
.+ +||+.|++.|+++...||++|++-.+
T Consensus 309 ~l~~lsd~E~~~l~~~~~eLk~sI~KGv~ 337 (345)
T KOG1494|consen 309 GLGKLSDYEEKALEAAKPELKKSIEKGVT 337 (345)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHhhHH
Confidence 88 99999999999999999999998654
No 36
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=98.69 E-value=1.7e-07 Score=83.72 Aligned_cols=81 Identities=7% Similarity=0.028 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCC-CccceEEEeeEEEcCCceeEEecCCCCHHHHHHHHHHHHHHHHHHH
Q psy17699 38 PRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHG-IEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYM 116 (149)
Q Consensus 38 iA~aia~IveaIL~D~de~~IlpvS~~l~G~YG-i~~dV~lSvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~ 116 (149)
-|.++.+|++||++|+ +.+++||++.+|.|+ +.+|+++++||+||++|++++---+|.+.-...++.-...-+-+++
T Consensus 315 ya~~a~~ii~aI~~d~--~~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~vg~lP~~~~~l~~~~~~~e~l~ve 392 (437)
T cd05298 315 HGEYIVDLAASIAYNT--KERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVVGKIPTFYKGLMEQQVAYEKLLVE 392 (437)
T ss_pred hHHHHHHHHHHHHcCC--CeEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceecccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3778999999999996 799999999999996 4459999999999999999996558888876666555544444444
Q ss_pred HHHh
Q psy17699 117 YFLT 120 (149)
Q Consensus 117 ~~~~ 120 (149)
.+++
T Consensus 393 Aa~~ 396 (437)
T cd05298 393 AYLE 396 (437)
T ss_pred HHHh
Confidence 4333
No 37
>KOG1496|consensus
Probab=97.98 E-value=5.3e-05 Score=64.95 Aligned_cols=106 Identities=13% Similarity=0.121 Sum_probs=87.6
Q ss_pred eccchhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEe
Q psy17699 14 SSHKISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIV 92 (149)
Q Consensus 14 ~~~~~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl 92 (149)
....+++.+++|.-| .+|-+....-|.++++=++.+...+-+..-+..+++.||.||+++|.-+|.|+.+-..-++-+-
T Consensus 221 g~Fi~tVQkRGaavi~ark~SSA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDGsYgip~gli~SfPv~~k~g~wkiVq 300 (332)
T KOG1496|consen 221 GEFIETVQKRGAAVIKARKLSSAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDGSYGIPDGLIFSFPVTIKNGDWKIVQ 300 (332)
T ss_pred cchhhHHHhcchHhhhhhhhhhhhhHHHhHhhhhhheecCCCCccEEEEeeecCCCCCCCCCeEEEcceEecCCceEEEc
Confidence 344455566666666 7888888888999999999998887677888889999999999999999999999765566666
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 93 NQPLTQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 93 ~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
.+++++.-++++..+++.|++-=+.+.
T Consensus 301 gl~iddf~r~km~~t~~EL~eEkd~a~ 327 (332)
T KOG1496|consen 301 GLPIDDFSREKMDLTAKELKEEKDLAY 327 (332)
T ss_pred CcchhHHHHHhhhhhHHHHHHhHHHHH
Confidence 889999999999999999988655443
No 38
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=97.12 E-value=0.0047 Score=56.02 Aligned_cols=88 Identities=11% Similarity=0.105 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhhcCCCCCeEEEeeeeccCc-CCCccceEEEeeEEEcCCceeEEecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17699 39 RGGLTHNIQVPLLDFDSNVESCEKSKSEGH-HGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 39 A~aia~IveaIL~D~de~~IlpvS~~l~G~-YGi~~dV~lSvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
+..+.+|++||.+|+ +.++.+-+.-+|. -++++|..+=+||+|+++|++.....+|.+.-...++.....-+=+++.
T Consensus 319 ~e~a~~ii~Ai~~~~--~~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~g~lP~~~~~l~~~~i~~e~l~veA 396 (442)
T COG1486 319 SEYASNIINAIENNK--PSRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAVGDLPEFVKGLMHTNINVEELTVEA 396 (442)
T ss_pred HHHHHHHHHHHhcCC--ceEEEEEcCCCccccCCCCCeEEEeeEEecCCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999997 7888888888886 5888999999999999999999988999999888888887777767776
Q ss_pred HHhchhhhhhh
Q psy17699 118 FLTTYIPKIFQ 128 (149)
Q Consensus 118 ~~~~~~~~~~~ 128 (149)
.++.=.-+++|
T Consensus 397 ~~t~d~~~~~~ 407 (442)
T COG1486 397 ALTGDRDLALQ 407 (442)
T ss_pred HHhcCHHHHHH
Confidence 66655555544
No 39
>PRK15076 alpha-galactosidase; Provisional
Probab=95.80 E-value=0.13 Score=45.96 Aligned_cols=78 Identities=10% Similarity=0.074 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhhcCCCCCeEEEeeeeccCcC-CCccceEEEeeEEEcCCceeEEecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17699 39 RGGLTHNIQVPLLDFDSNVESCEKSKSEGHH-GIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 39 A~aia~IveaIL~D~de~~IlpvS~~l~G~Y-Gi~~dV~lSvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
+..+..+++||.+|. +.++.+.+.-+|.- ++++|..+=+||+|+++|++.+---+|.+.-+..++.-...-+-+++.
T Consensus 307 ~e~a~~ii~ai~~~~--~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~g~lP~~~~~l~~~~~~~e~l~veA 384 (431)
T PRK15076 307 REYASTIIEAIETGE--PSVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKVGDLPPQLAALNRTNINVQELTVEA 384 (431)
T ss_pred hHHHHHHHHHHhcCC--ceEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999997 67888888877754 888899999999999999999865688887666655544443333333
Q ss_pred H
Q psy17699 118 F 118 (149)
Q Consensus 118 ~ 118 (149)
.
T Consensus 385 a 385 (431)
T PRK15076 385 A 385 (431)
T ss_pred H
Confidence 3
No 40
>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases. It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.
Probab=95.70 E-value=0.16 Score=41.18 Aligned_cols=91 Identities=11% Similarity=0.082 Sum_probs=62.4
Q ss_pred ccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcC-CCccceEEEeeEEEcCCceeEEecCCCCHHHHHHHHHHH
Q psy17699 30 FMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHH-GIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSA 108 (149)
Q Consensus 30 ~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~Y-Gi~~dV~lSvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa 108 (149)
..|+..|+. .++++|.+|. ..++-+.+.-+|.- ++++|.++=+||+|+++|++.+---+|.+.-...++...
T Consensus 132 ~~~~~~~a~-----~~i~~i~~~~--~~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~~g~lP~~~~~li~~~~ 204 (232)
T PF11975_consen 132 KRGSGEYAE-----AAIEAIYNDK--PKRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVAVGPLPPAIAGLIQQVK 204 (232)
T ss_dssp SSTTSCHHH-----HHHHHHHHSS--EEEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB-SB---HHHHHHHHHHH
T ss_pred cccccchHH-----HHHHHHhcCC--CeEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEeccCCCCCHHHHHHHHHHH
Confidence 445666554 4566668885 67888888888863 788899999999999999999766699998888777776
Q ss_pred HHHHHHHHHHHhchhhhhh
Q psy17699 109 QAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 109 ~~Ik~~i~~~~~~~~~~~~ 127 (149)
..-+-+++.+++.=.-+.+
T Consensus 205 ~~e~L~veAa~~gd~~~a~ 223 (232)
T PF11975_consen 205 AYERLTVEAALEGDREKAL 223 (232)
T ss_dssp HHHHHHHHHHHHTBHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHH
Confidence 6666666665554433333
No 41
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.59 E-value=0.16 Score=45.11 Aligned_cols=80 Identities=13% Similarity=0.114 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhhcCCCCCeEEEeeeeccCc-CCCccceEEEeeEEEcCCceeEEecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17699 39 RGGLTHNIQVPLLDFDSNVESCEKSKSEGH-HGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 39 A~aia~IveaIL~D~de~~IlpvS~~l~G~-YGi~~dV~lSvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
+..+..+++||.+|+ +.++.+.+.-+|. -++++|+++=+||.|+++|++.+---+|.+.-...++.-...-+-+++.
T Consensus 310 ~e~a~~ii~ai~~~~--~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~g~lp~~~~~l~~~~~~~e~l~veA 387 (423)
T cd05297 310 GEYASPIIEALVTGK--PRRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKIGPLPPQLAALIRPRINVQELAVEA 387 (423)
T ss_pred hHHHHHHHHHHhcCC--ceEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceecccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999986 6888888887776 3888899999999999999999865588777666555544444444444
Q ss_pred HHh
Q psy17699 118 FLT 120 (149)
Q Consensus 118 ~~~ 120 (149)
.++
T Consensus 388 ~~~ 390 (423)
T cd05297 388 ALT 390 (423)
T ss_pred HHh
Confidence 333
No 42
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=95.51 E-value=0.18 Score=45.16 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhhcCCCCCeEEEeeeeccCcC-CCccceEEEeeEEEcCCceeEEecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17699 39 RGGLTHNIQVPLLDFDSNVESCEKSKSEGHH-GIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 39 A~aia~IveaIL~D~de~~IlpvS~~l~G~Y-Gi~~dV~lSvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
+..++.+++||.+|+ ...+-+.+.-+|.- ++++|.++=+||+|+++|++.+---+|.+.....++.-...=+-+++.
T Consensus 302 ~e~a~~ii~ai~~~~--~~~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~vg~lP~~~~~l~~~~~~~e~l~veA 379 (419)
T cd05296 302 SEAALALISAIYNDK--GDIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLPVGPLPPAILGLIQQVKAYERLTIEA 379 (419)
T ss_pred HHHHHHHHHHHhcCC--CcEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999986 67788877877764 787899999999999999999854488887665544443333333443
Q ss_pred HH
Q psy17699 118 FL 119 (149)
Q Consensus 118 ~~ 119 (149)
++
T Consensus 380 a~ 381 (419)
T cd05296 380 AV 381 (419)
T ss_pred HH
Confidence 33
No 43
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=95.42 E-value=0.21 Score=44.77 Aligned_cols=66 Identities=21% Similarity=0.332 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhhcCCCCCeEEEeeeeccCcC-CCccceEEEeeEEEcCCceeEEecCCCCHHHHHHHHH
Q psy17699 39 RGGLTHNIQVPLLDFDSNVESCEKSKSEGHH-GIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKK 106 (149)
Q Consensus 39 A~aia~IveaIL~D~de~~IlpvS~~l~G~Y-Gi~~dV~lSvP~vIGr~GVe~vl~l~Ls~eEqe~L~~ 106 (149)
+..++.|++||.+|+ +.++.+-+.-+|.- ++++|.++=+||+|+++|++.+---+|.+.-...++.
T Consensus 313 ~e~a~~ii~ai~~~~--~~~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~vg~lp~~~~~Li~~ 379 (425)
T cd05197 313 SEAAIPLIRALLNDN--GARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKVGPLDRFVKGLLRQ 379 (425)
T ss_pred HHHHHHHHHHHHcCC--CeEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceecccCCCCHHHHHHHHH
Confidence 457889999999997 67788777777753 8888999999999999999998655886644343433
No 44
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=71.85 E-value=8.9 Score=30.07 Aligned_cols=15 Identities=47% Similarity=0.707 Sum_probs=13.2
Q ss_pred cCCCCHHHHHHHHHH
Q psy17699 93 NQPLTQEEIEKLKKS 107 (149)
Q Consensus 93 ~l~Ls~eEqe~L~~S 107 (149)
+.+||+||+++++++
T Consensus 136 ~~~LS~EE~eal~~A 150 (151)
T PF14584_consen 136 SYPLSEEEKEALEKA 150 (151)
T ss_pred cccCCHHHHHHHHHh
Confidence 578999999999875
No 45
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=63.76 E-value=29 Score=28.10 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=33.7
Q ss_pred eeEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhccceee--c--ceeeEEEEeee
Q psy17699 88 VTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQLGQVQY--S--SCRHIVIEMNI 146 (149)
Q Consensus 88 Ve~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~ 146 (149)
++..-...|+++++++|.+.+..|-+.+ ++--++-+|| . +.+..|+|||-
T Consensus 125 i~~~P~~~L~~~~~~~l~~~a~~ia~~l---------~~~G~~tvef~~~~~~~~~y~lEvNp 178 (211)
T PF02786_consen 125 IEEAPAQTLSDEERQKLREAAKKIARAL---------GYVGAGTVEFAVDPDDGEFYFLEVNP 178 (211)
T ss_dssp EEEES-SSS-HHHHHHHHHHHHHHHHHT---------T-EEEEEEEEEEETTTTEEEEEEEES
T ss_pred eeEeeccccchHHHHHHHHHHHHHHHhh---------CeeecceEEEEEccCccceeeecccC
Confidence 3334345899999999999887776543 2334555654 4 67999999995
No 46
>PF05397 Med15_fungi: Mediator complex subunit 15; InterPro: IPR008626 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family represents subunit 15 of the Mediator complex in fungi. It contains Saccharomyces cerevisiae GAL11 (Med15) protein. Gal11 (Med15) and Sin4 (Med16) proteins are S. cerevisiae global transcription factors that regulate transcription of a variety of genes, both positively and negatively. Gal11, in a major part, functions in the activation of transcription, whereas Sin4 has an opposite role [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=59.90 E-value=21 Score=26.68 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhc
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQL 129 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~~~ 129 (149)
.||++|++...+....+...+..+.. |||-.|-+
T Consensus 28 ~ls~eeK~~i~~~l~~~~~m~~~vd~-li~~f~~l 61 (115)
T PF05397_consen 28 SLSPEEKAAIRQQLQEIQDMLARVDS-LIPWFYKL 61 (115)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 49999999999999999998888765 88877644
No 47
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=56.31 E-value=12 Score=35.59 Aligned_cols=102 Identities=13% Similarity=0.074 Sum_probs=67.5
Q ss_pred ccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEE--------EcCCceeEEe--cCCCCHH
Q psy17699 30 FMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCV--------MADNGVTHIV--NQPLTQE 99 (149)
Q Consensus 30 ~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~v--------IGr~GVe~vl--~l~Ls~e 99 (149)
.+..--||-|.+...+++++..+. . ..||....+...-.. ....|+|+. +-+-++++++ -+.++.+
T Consensus 116 ~~r~lIiGAG~ag~~l~r~~~~~~--~-~~pV~fiDdd~~~~g-~~i~Gv~V~g~~~i~~~v~~~~~~~iiiAips~~~~ 191 (588)
T COG1086 116 RIRLLIIGAGSAGDLLLRALRRDP--E-YTPVAFLDDDPDLTG-MKIRGVPVLGRIEIERVVEELGIQLILIAIPSASQE 191 (588)
T ss_pred CCceEEEcCchHHHHHHHHHHhCC--C-cceEEEECCChhhcC-CEEeceeeechhHHHHHHHHcCCceEEEecCCCCHH
Confidence 345678999999999999999996 3 788877766544332 567777764 3344555443 4578888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhhhhccceeecceeeEE
Q psy17699 100 EIEKLKKSAQAISQDYMYFLTTYIPKIFQLGQVQYSSCRHIV 141 (149)
Q Consensus 100 Eqe~L~~Sa~~Ik~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (149)
|++.+-+++.... +.-..+|++.+|.+ .-+.-|.|-
T Consensus 192 ~~~~i~~~l~~~~-----~~v~~lP~~~~l~~-~~~~lreI~ 227 (588)
T COG1086 192 ERRRILLRLARTG-----IAVRILPQLTDLKD-LNGQLREIE 227 (588)
T ss_pred HHHHHHHHHHhcC-----CcEEecCcHHHHHH-hccccccCC
Confidence 8877766554433 34566788888766 333344443
No 48
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=49.71 E-value=21 Score=24.75 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy17699 94 QPLTQEEIEKLKKSAQAISQD 114 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~ 114 (149)
++||++||+.|++--+.++..
T Consensus 1 M~LSe~E~r~L~eiEr~L~~~ 21 (82)
T PF11239_consen 1 MPLSEHEQRRLEEIERQLRAD 21 (82)
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 479999999999976666543
No 49
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=49.65 E-value=29 Score=24.68 Aligned_cols=35 Identities=20% Similarity=0.450 Sum_probs=27.1
Q ss_pred ceEEEeeEEEcCCceeEEecCCCCHHHHHHHHHHH
Q psy17699 74 EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSA 108 (149)
Q Consensus 74 dV~lSvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa 108 (149)
+.|+++|..=.++|.-+-+-.|+|.+=+++|++++
T Consensus 42 GlFVaMPs~k~~~g~y~Di~~Pitke~Re~i~~aV 76 (84)
T PF04026_consen 42 GLFVAMPSRKSKDGEYKDICHPITKEFREQIEEAV 76 (84)
T ss_dssp EEEEE--EEE-TTS-EEESEEESSHHHHHHHHHHH
T ss_pred CcEEECCCcCCCCCCEEEEEEECCHHHHHHHHHHH
Confidence 68999999999998888877899999999998864
No 50
>PF10335 DUF294_C: Putative nucleotidyltransferase substrate binding domain; InterPro: IPR018821 This entry is found associated with presumed nucleotidyltransferase domains and seems to be distantly related to other helical substrate binding domains.
Probab=46.25 E-value=32 Score=26.06 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=25.2
Q ss_pred EecC-CCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17699 91 IVNQ-PLTQEEIEKLKKSAQAISQDYMYFLTT 121 (149)
Q Consensus 91 vl~l-~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~ 121 (149)
.+++ .|++.|++.|+++.+.+++..+.+..+
T Consensus 113 ~i~~~~Ls~~er~~Lk~al~~i~~lq~~l~~~ 144 (145)
T PF10335_consen 113 YIDPDELSKLERRRLKEALRVIKRLQRLLRRR 144 (145)
T ss_pred ccCHHHCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444 899999999999999999877766544
No 51
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=45.08 E-value=90 Score=22.51 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=30.4
Q ss_pred cceEEEeeEEEcCCceeEEecCCC--CHHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 73 EEVFLSLPCVMADNGVTHIVNQPL--TQEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 73 ~dV~lSvP~vIGr~GVe~vl~l~L--s~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
.++.+|-..++...- ..+-+... .+.|+++|+++.+..++.++.+...+
T Consensus 8 ~Gia~G~~~~~~~~~-~~~~~~~~~~~~~E~~rl~~Al~~~~~eL~~l~~~~ 58 (123)
T PF05524_consen 8 PGIAIGPAFVLRPPE-PEIPERHIDDIEAEIERLEQALEKAREELEQLAERA 58 (123)
T ss_dssp BCEEEEEEEE----------TTB-SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEEEeccc-CcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888887544 22222222 27889999999999988888877764
No 52
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=42.77 E-value=50 Score=21.81 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTT 121 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~ 121 (149)
.||++|++.+.+-|+..++.++.-.+.
T Consensus 45 ~Ls~~EK~~Y~~~A~~~k~~y~~e~~~ 71 (73)
T PF09011_consen 45 SLSEEEKEPYEERAKEDKERYEREMKE 71 (73)
T ss_dssp HS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999988775554
No 53
>PRK12897 methionine aminopeptidase; Reviewed
Probab=42.56 E-value=37 Score=27.50 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhchhh
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFLTTYIP 124 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~ 124 (149)
-|++|++.++++++.-.+.++.+.+.+-|
T Consensus 5 Ks~~EI~~~r~A~~i~~~~~~~~~~~~~~ 33 (248)
T PRK12897 5 KTKNEIDLMHESGKLLASCHREIAKIMKP 33 (248)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 47999999999999998888887766655
No 54
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=41.81 E-value=45 Score=24.45 Aligned_cols=35 Identities=17% Similarity=0.454 Sum_probs=31.1
Q ss_pred ceEEEeeEEEcCCceeEEecCCCCHHHHHHHHHHH
Q psy17699 74 EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSA 108 (149)
Q Consensus 74 dV~lSvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa 108 (149)
+.|+++|..=..+|.-+-+--|+|.+=+++|+.++
T Consensus 42 GlFVaMPs~k~~~g~y~DI~~Pit~e~Re~i~~aV 76 (94)
T PRK13259 42 GLFIAMPSKRTPDGEFRDIAHPINSDTREKIQDAI 76 (94)
T ss_pred CeEEECcCcCCCCCcEEEEEccCCHHHHHHHHHHH
Confidence 78999999988889888888899999999998864
No 55
>PF08848 DUF1818: Domain of unknown function (DUF1818); InterPro: IPR014947 This entry represents a small family of uncharacterised cyanobacterial proteins. ; PDB: 2IT9_A 2NVN_A.
Probab=41.27 E-value=41 Score=25.70 Aligned_cols=44 Identities=9% Similarity=0.151 Sum_probs=35.6
Q ss_pred EeeEEEcCCceeEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 78 SLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 78 SvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
..|.+||.++.- +.||+.|.+.|-+-...|.+++..+.+.|++.
T Consensus 17 ~f~~LIGge~WA----iELT~~E~~~f~~Ll~~L~~q~~~i~~eLM~E 60 (117)
T PF08848_consen 17 EFCGLIGGEDWA----IELTEAEFNDFCRLLQQLAEQMQAIADELMDE 60 (117)
T ss_dssp SS-EEEE-SSEE----EEE-HHHHHHHHHHHHHHHHHHHCCHTTSSTT
T ss_pred CCCEEEccCchh----eeecHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 357789988763 56999999999999999999999999999875
No 56
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=40.74 E-value=48 Score=21.01 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
.|+++|++.+.+-++..++.+.+-...|
T Consensus 41 ~l~~~eK~~y~~~a~~~~~~y~~~~~~y 68 (69)
T PF00505_consen 41 NLSEEEKAPYKEEAEEEKERYEKEMPEY 68 (69)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999998887766543
No 57
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=39.95 E-value=1.8e+02 Score=26.59 Aligned_cols=85 Identities=22% Similarity=0.291 Sum_probs=56.9
Q ss_pred eeeHHH--HHHHHHHhhhcCCCCCeEEEee--eeccC---cCCCccceEEEeeEEE-cCCceeEEecCCCCHHHHHHHHH
Q psy17699 35 IEGPRG--GLTHNIQVPLLDFDSNVESCEK--SKSEG---HHGIEEEVFLSLPCVM-ADNGVTHIVNQPLTQEEIEKLKK 106 (149)
Q Consensus 35 ~ygiA~--aia~IveaIL~D~de~~IlpvS--~~l~G---~YGi~~dV~lSvP~vI-Gr~GVe~vl~l~Ls~eEqe~L~~ 106 (149)
.||+|. =..+|+++++.|--.-.|+-+| +...| --|++ |+-+|++. ++||-....+..++-+|..+++.
T Consensus 19 ~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd---~V~LPsl~k~~~G~~~~~d~~~~l~e~~~~Rs 95 (400)
T COG4671 19 LLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVD---FVKLPSLIKGDNGEYGLVDLDGDLEETKKLRS 95 (400)
T ss_pred hccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCc---eEecCceEecCCCceeeeecCCCHHHHHHHHH
Confidence 356665 3567999999992113455543 33333 23665 89999996 88899999999999888888876
Q ss_pred HHHHHHHHHHHHHhchhhhhhh
Q psy17699 107 SAQAISQDYMYFLTTYIPKIFQ 128 (149)
Q Consensus 107 Sa~~Ik~~i~~~~~~~~~~~~~ 128 (149)
+. |-+..++.-|.||-
T Consensus 96 ~l------il~t~~~fkPDi~I 111 (400)
T COG4671 96 QL------ILSTAETFKPDIFI 111 (400)
T ss_pred HH------HHHHHHhcCCCEEE
Confidence 43 44445556666653
No 58
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=39.50 E-value=55 Score=28.40 Aligned_cols=41 Identities=27% Similarity=0.275 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH-hchhhhhhhccceeec
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFL-TTYIPKIFQLGQVQYS 135 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~-~~~~~~~~~~~~~~~~ 135 (149)
.++.+|.+.|.+-...--+.+.+.- .+|+||+|-+=.++..
T Consensus 115 ti~~~E~~~l~~~Lp~Y~~~~~~n~~~TLL~k~~Gl~~i~~~ 156 (313)
T cd00139 115 TVSHSEIESLLKFLPNYYEYITQNPQNTLLPKFFGLYRVKVK 156 (313)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHhCCCCcchhhheEEEEEEEc
Confidence 4689999999976665566666666 8999999999888877
No 59
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=39.32 E-value=45 Score=26.68 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhchhh
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYFLTTYIP 124 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~~~~~~~ 124 (149)
|++|.++++++++.-.+.++.+.+.+-|
T Consensus 5 s~~Ei~~~r~A~~i~~~~~~~~~~~i~~ 32 (247)
T TIGR00500 5 SPDEIEKIRKAGRLAAEVLEELEREVKP 32 (247)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 7999999999999888888877766555
No 60
>PRK10972 Z-ring-associated protein; Provisional
Probab=36.64 E-value=66 Score=24.05 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=26.2
Q ss_pred EecCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 91 IVNQPLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 91 vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
.+.+.-.++|++.|.++|+.|.+.+.++..
T Consensus 14 ~y~v~Cp~~e~~~L~~AA~~Ld~km~~ir~ 43 (109)
T PRK10972 14 SLRVNCPPEQRDALNQAAEDLNQRLQDLKE 43 (109)
T ss_pred eeEecCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999988888765
No 61
>smart00398 HMG high mobility group.
Probab=36.05 E-value=84 Score=19.61 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
.|+++|++.+.+-++..++.+......|
T Consensus 42 ~l~~~ek~~y~~~a~~~~~~y~~~~~~y 69 (70)
T smart00398 42 LLSEEEKAPYEEKAKKDKERYEEEMPEY 69 (70)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999988888877665543
No 62
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.38 E-value=57 Score=24.74 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhchhh
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFLTTYIP 124 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~ 124 (149)
-++|+.|.+.|++-++.+.+..++-+++++-
T Consensus 83 ~nis~~El~~lk~la~~l~~~~~~~l~~~i~ 113 (120)
T PF06296_consen 83 ANISDKELKALKKLAKELLNLSEEQLETLIA 113 (120)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4899999999999999999887777776653
No 63
>PF15508 NAAA-beta: beta subunit of N-acylethanolamine-hydrolyzing acid amidase
Probab=34.37 E-value=96 Score=21.85 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=19.8
Q ss_pred EEecCCCCHHHH--H---HHHHHHHHHHHHHHHHHhchhhh
Q psy17699 90 HIVNQPLTQEEI--E---KLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 90 ~vl~l~Ls~eEq--e---~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
.+++++|+++|+ + .++.....+.+.+++++....|+
T Consensus 6 y~InLdlpP~eRw~~i~~~~k~~i~~l~~~~~~~~~~~~~~ 46 (95)
T PF15508_consen 6 YTINLDLPPEERWVQIAKDYKDEIRELIEVLKDLLQSFVPS 46 (95)
T ss_pred EEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 367899999996 3 33333333444444444444443
No 64
>PRK11546 zraP zinc resistance protein; Provisional
Probab=34.12 E-value=79 Score=24.80 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=29.4
Q ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhc
Q psy17699 90 HIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQL 129 (149)
Q Consensus 90 ~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~~~ 129 (149)
.-.-.+||+|.|+++++-.+........+...+.-|--+|
T Consensus 38 ~~~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~EL 77 (143)
T PRK11546 38 QQNAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEY 77 (143)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334689999999999887777777777777766665444
No 65
>PF14164 YqzH: YqzH-like protein
Probab=33.09 E-value=60 Score=22.35 Aligned_cols=21 Identities=38% Similarity=0.412 Sum_probs=16.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q psy17699 93 NQPLTQEEIEKLKKSAQAISQ 113 (149)
Q Consensus 93 ~l~Ls~eEqe~L~~Sa~~Ik~ 113 (149)
-.+||++|++.|.+.+...+.
T Consensus 23 ~~pls~~E~~~L~~~i~~~~~ 43 (64)
T PF14164_consen 23 CMPLSDEEWEELCKHIQERKN 43 (64)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 368999999999998766543
No 66
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=32.25 E-value=80 Score=23.28 Aligned_cols=30 Identities=10% Similarity=0.195 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYIP 124 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~ 124 (149)
.|++++++++-+-++...+.++++...|.-
T Consensus 98 ~L~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 127 (135)
T PRK09706 98 ALPESEQDAQLSEMRARVENFNKLFEELLK 127 (135)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888777777777766653
No 67
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=31.76 E-value=96 Score=21.62 Aligned_cols=29 Identities=17% Similarity=0.076 Sum_probs=22.8
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 92 VNQPLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 92 l~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
-.+.|+++|.++|.+-.+.|-+.++.+.+
T Consensus 13 a~L~l~eee~~~~~~~l~~il~~~~~L~~ 41 (93)
T TIGR00135 13 ARLELSEEEAESFAGDLDKILGFVEQLNE 41 (93)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36789999999999888888777666543
No 68
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=31.54 E-value=1e+02 Score=21.44 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=24.0
Q ss_pred EecCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 91 IVNQPLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 91 vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
...+.|+++|.++|.+-.+.|-+.++.+.+
T Consensus 14 La~l~l~~ee~~~~~~~l~~il~~~~~l~~ 43 (95)
T PRK00034 14 LARLELSEEELEKFAGQLNKILDFVEQLNE 43 (95)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346789999999999988888887776654
No 69
>PRK12318 methionine aminopeptidase; Provisional
Probab=31.33 E-value=69 Score=27.08 Aligned_cols=30 Identities=23% Similarity=0.196 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
=|++|.++++++++...+.++.+.+.+-|-
T Consensus 44 Ks~~EIe~~R~Aa~I~~~a~~a~~~~irpG 73 (291)
T PRK12318 44 KTPEQIEKIRKACQVTARILDALCEAAKEG 73 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 369999999999999998888887776664
No 70
>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []. This region is found in I, II and III phosphatidylinositol-4-phosphate 5-kinases (PIP5K enzymes). PIP5K catalyses the formation of phosphoinositol-4,5-bisphosphate via the phosphorylation of phosphatidylinositol-4-phosphate a precursor in the phosphinositide signalling pathway.; GO: 0016307 phosphatidylinositol phosphate kinase activity, 0046488 phosphatidylinositol metabolic process; PDB: 1BO1_A 2GK9_C 2YBX_B.
Probab=30.64 E-value=80 Score=26.20 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhccceee-c--ceeeEEEEeee
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQLGQVQY-S--SCRHIVIEMNI 146 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~ 146 (149)
++.+|.+.|.+-+..--+.+...-.+|+||+|.+=.++. . .+.|+|+=-|+
T Consensus 35 i~~~E~~~l~~~lp~Y~~~~~~~~~SlL~r~~Gl~~i~~~~~~~~~~fvVM~N~ 88 (252)
T PF01504_consen 35 ISKSEFKFLLKILPAYFEHMSENPNSLLPRFYGLYSIKKSNGKEKIYFVVMENL 88 (252)
T ss_dssp E-HHHHHHHHHHHHHHHHHHHHTTTSSS--EEEEEEE-EETT-EEEEEEEEE-S
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCcCchHHHHHHHheecccCCceeEEEEEECCC
Confidence 589999999997766666777777799999999888843 2 46677665554
No 71
>PRK09458 pspB phage shock protein B; Provisional
Probab=30.43 E-value=94 Score=21.99 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=17.5
Q ss_pred CCCCHHHHHHHH---HHHHHHHHHHHHH
Q psy17699 94 QPLTQEEIEKLK---KSAQAISQDYMYF 118 (149)
Q Consensus 94 l~Ls~eEqe~L~---~Sa~~Ik~~i~~~ 118 (149)
-.||++|+++|+ +.|+.+++-++.+
T Consensus 34 ~~Ls~~d~~~L~~L~~~A~rm~~RI~tL 61 (75)
T PRK09458 34 QGLSQEEQQRLAQLTEKAERMRERIQAL 61 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999987777 5567776665543
No 72
>PRK07281 methionine aminopeptidase; Reviewed
Probab=30.34 E-value=73 Score=27.03 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
=|++|.++++++++...+.+..+.+.+-|-
T Consensus 5 Ks~~EI~~mr~A~~i~~~~~~~~~~~i~pG 34 (286)
T PRK07281 5 KSAREIEAMDRAGDFLASIHIGLRDLIKPG 34 (286)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCcCC
Confidence 379999999999999988887776665553
No 73
>PF12296 HsbA: Hydrophobic surface binding protein A; InterPro: IPR021054 Hydrophobic surface binding proteins are typically between 171 to 275 amino acids in length. Although the HsbA amino acid sequence suggests that HsbA may be hydrophilic, HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) surfaces in the presence of NaCl or CaCl2. When HsbA was adsorbed on the hydrophobic PBSA surfaces, it promoted PBSA degradation via the CutL1 polyesterase. CutL1 interacts directly with HsbA attached to the hydrophobic QCM electrode surface. These results suggest that when HsbA is adsorbed onto the PBSA surface, it recruits CutL1, and that when CutL1 is accumulated on the PBSA surface, it stimulates PBSA degradation []. This entry is also characterised by a antigenic cell wall galactomannoprotein in Aspergillus fumigatus, which is a protein of 284 amino acid residues. It contains a serine- and threonine-rich region for O glycosylation, a signal peptide, and a putative glycosylphosphatidyl inositol attachment signal sequence. Ultrastructural analysis showed that the protein is present in the cell walls of hyphae and conidia []. ; PDB: 3L1N_A.
Probab=29.81 E-value=90 Score=22.25 Aligned_cols=33 Identities=30% Similarity=0.357 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKI 126 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~ 126 (149)
.+|+++|-..+......|...+..+++.++.|-
T Consensus 59 ~~lt~~ds~~l~~~~~~l~~~i~~~l~~l~~Kk 91 (124)
T PF12296_consen 59 PPLTDEDSLALLQAVQTLQPDIQDALNALIAKK 91 (124)
T ss_dssp ----HHHHHHHH-HHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHhH
Confidence 589999999999999999999999999999774
No 74
>PRK05716 methionine aminopeptidase; Validated
Probab=29.47 E-value=82 Score=25.15 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
|++|.+.++++++...+.++.+.+.+-|-
T Consensus 7 s~~Ei~~~r~A~~i~~~~~~~a~~~i~pG 35 (252)
T PRK05716 7 TPEEIEKMRVAGRLAAEVLDEIEPHVKPG 35 (252)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 79999999999999888888877766664
No 75
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=29.35 E-value=98 Score=21.21 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=26.5
Q ss_pred EEcCCceeEEecCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 82 VMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 82 vIGr~GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
|+-|.-+... .+|+++|+..|-..+..+.+.+.+...
T Consensus 31 Vipk~H~~~l--~dl~~~~~~~l~~~~~~v~~~l~~~~~ 67 (98)
T PF01230_consen 31 VIPKRHVESL--SDLPPEERAELMQLVQKVAKALKEAFG 67 (98)
T ss_dssp EEESSTGSSG--GGSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEecccccch--hcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 4445544444 367799999999988888888777553
No 76
>PRK12896 methionine aminopeptidase; Reviewed
Probab=28.90 E-value=85 Score=25.11 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
-|++|.+.++++++.-.+.++.+.+.+-|-
T Consensus 11 Ks~~Ei~~~r~a~~i~~~~~~~~~~~i~pG 40 (255)
T PRK12896 11 KSPRELEKMRKIGRIVATALKEMGKAVEPG 40 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 589999999999998888888777666553
No 77
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=28.27 E-value=1.2e+02 Score=20.29 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 98 QEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 98 ~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
..|.+.+.++.+.|.+++++++.-|
T Consensus 20 k~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 20 KKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777766544
No 78
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=28.27 E-value=1.1e+02 Score=22.04 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=23.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 93 NQPLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 93 ~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
.+.||++|.++|....+.|-+.++++.+
T Consensus 16 rL~lseee~e~~~~~l~~Il~~veql~e 43 (96)
T COG0721 16 RLELSEEELEKFATQLEDILGYVEQLNE 43 (96)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999998888777654
No 79
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=28.27 E-value=97 Score=20.58 Aligned_cols=28 Identities=14% Similarity=0.013 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
.|+++|++.+.+-|+..++.+......|
T Consensus 42 ~ls~eeK~~y~~~A~~~k~~~~~~~p~Y 69 (77)
T cd01389 42 SESPEVKAYYKELAEEEKERHAREYPDY 69 (77)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 7999999999999999998887766554
No 80
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=27.67 E-value=1.7e+02 Score=23.20 Aligned_cols=77 Identities=6% Similarity=-0.003 Sum_probs=42.0
Q ss_pred eeHHHHHHHHHHhhhcCCCCCeEEEeeeecc--------CcCCCccceEEEeeEEEcCCceeEEe-cCCCCHHHHHHHHH
Q psy17699 36 EGPRGGLTHNIQVPLLDFDSNVESCEKSKSE--------GHHGIEEEVFLSLPCVMADNGVTHIV-NQPLTQEEIEKLKK 106 (149)
Q Consensus 36 ygiA~aia~IveaIL~D~de~~IlpvS~~l~--------G~YGi~~dV~lSvP~vIGr~GVe~vl-~l~Ls~eEqe~L~~ 106 (149)
.+-|..++.-++-|.-+.+ ..+-.++.... ...|++ .=++.+. |-.+.. .-++|+++++.++.
T Consensus 82 ~s~gy~la~~aD~i~a~~~-a~~gsiGv~~~~~~~~~~l~k~Gv~----~~~~~~~---g~~k~~~~~~~s~e~r~~~~~ 153 (211)
T cd07019 82 ASGGYWISTPANYIVANPS-TLTGSIGIFGVITTVENSLDSIGVH----TDGVSTS---PLADVSITRALPPEAQLGLQL 153 (211)
T ss_pred hhHHHHHHHhCCEEEEcCC-CEEEEeEEEEEcCCHHHHHHhcCCc----eEEEEec---CcccCCCCCCCCHHHHHHHHH
Confidence 4555566666666666652 45555554421 123433 1112222 322222 33799999999998
Q ss_pred HHHHHHHHHHHHHh
Q psy17699 107 SAQAISQDYMYFLT 120 (149)
Q Consensus 107 Sa~~Ik~~i~~~~~ 120 (149)
..+.+.+.+-+...
T Consensus 154 ~ld~~~~~f~~~Va 167 (211)
T cd07019 154 SIENGYKRFITLVA 167 (211)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777776555443
No 81
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=27.50 E-value=75 Score=25.83 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=40.0
Q ss_pred EeeEEEcCCceeEE-ecCCCCHHH-HHHHHHHHHHHHHHHHHHHhc--------hhhhhhhccceeecceeeE
Q psy17699 78 SLPCVMADNGVTHI-VNQPLTQEE-IEKLKKSAQAISQDYMYFLTT--------YIPKIFQLGQVQYSSCRHI 140 (149)
Q Consensus 78 SvP~vIGr~GVe~v-l~l~Ls~eE-qe~L~~Sa~~Ik~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~ 140 (149)
++|.+|=-|-+.+. .++.++++| +.+|++-.+.+...+.+.... -++---..|.|-|.|++|=
T Consensus 125 ~~p~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~g 197 (222)
T cd01885 125 RVKPVLVINKIDRLILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHG 197 (222)
T ss_pred CCCEEEEEECCCcchhhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccC
Confidence 56776655556544 567888777 577888777777776665321 1111135688999998873
No 82
>PLN02472 uncharacterized protein
Probab=27.01 E-value=1.6e+02 Score=24.58 Aligned_cols=42 Identities=26% Similarity=0.392 Sum_probs=29.8
Q ss_pred ceEEEeeEEEcCCceeEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhchhh
Q psy17699 74 EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIP 124 (149)
Q Consensus 74 dV~lSvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~ 124 (149)
.++.+.|+..- -.++++|.+.|.+.++.+++.-++-.+.+.|
T Consensus 186 ~~~~G~PA~~~---------~~~~~~~~~~l~~~a~~y~~l~k~~~~~~~~ 227 (246)
T PLN02472 186 ELWAGNPARFV---------RTLTNEETLEIPKLAVAINDLSQSHFSEFLP 227 (246)
T ss_pred CEEEecCCEEe---------ccCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35556665442 2688889999999999888876666666555
No 83
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=26.87 E-value=49 Score=27.70 Aligned_cols=43 Identities=23% Similarity=0.475 Sum_probs=27.5
Q ss_pred EEEcCCceeEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhhh-ccceeecceeeEE
Q psy17699 81 CVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQ-LGQVQYSSCRHIV 141 (149)
Q Consensus 81 ~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~ 141 (149)
.++..-|+.+.--..++++| +..+.|.+++ .++.+|+.|+|+-
T Consensus 216 ~liDtPG~~~~~~~~~~~~~------------------~~~~f~~~~~~~~~C~F~~C~H~~ 259 (287)
T cd01854 216 LLIDTPGFREFGLLHIDPEE------------------LAHYFPEFRELAGQCKFRDCTHTN 259 (287)
T ss_pred EEEECCCCCccCCccCCHHH------------------HHHHhHHHHHHhCCCCCCCCcCCC
Confidence 46666777654324566665 3345555555 4679999999974
No 84
>PF06059 DUF930: Domain of Unknown Function (DUF930); InterPro: IPR009273 This is a family of bacterial proteins with undetermined function. All bacteria in this family are from the Rhizobiales order.
Probab=26.87 E-value=37 Score=25.07 Aligned_cols=12 Identities=33% Similarity=0.878 Sum_probs=10.1
Q ss_pred CCCCceeEEeee
Q psy17699 3 FGSGGWWFEFKS 14 (149)
Q Consensus 3 ~~~~~~~~~~~~ 14 (149)
|-|+|.||.+.=
T Consensus 56 FRs~g~WY~l~F 67 (101)
T PF06059_consen 56 FRSRGKWYDLSF 67 (101)
T ss_pred EecCCeEEEEEE
Confidence 789999998764
No 85
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=26.64 E-value=95 Score=20.58 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=17.7
Q ss_pred eEEecCCCCHHHHHHHHHHHHH
Q psy17699 89 THIVNQPLTQEEIEKLKKSAQA 110 (149)
Q Consensus 89 e~vl~l~Ls~eEqe~L~~Sa~~ 110 (149)
+-.+++.||+.|++.+++-|..
T Consensus 18 ~l~Fpp~ls~~eR~~vH~~a~~ 39 (59)
T cd06007 18 EYEFPSSLTNHERAVIHRLCRK 39 (59)
T ss_pred EEEcCCCCCHHHHHHHHHHHHH
Confidence 3466778999999999987765
No 86
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.35 E-value=56 Score=26.21 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=33.1
Q ss_pred EeeeeccCcCCCccceEEE-----eeEEEcCCce------------eEEec-C-CCCHHHHHHHHHHHHHHH
Q psy17699 60 CEKSKSEGHHGIEEEVFLS-----LPCVMADNGV------------THIVN-Q-PLTQEEIEKLKKSAQAIS 112 (149)
Q Consensus 60 pvS~~l~G~YGi~~dV~lS-----vP~vIGr~GV------------e~vl~-l-~Ls~eEqe~L~~Sa~~Ik 112 (149)
.||+...|+|-++ +|+.- +|.-=..-|- .+.++ + .||++|+++|++|...|-
T Consensus 44 ~C~~~IrG~y~v~-gv~~~g~~~~~PsYC~~CGkpyPWt~~~L~aa~el~ee~eeLs~deke~~~~sl~dL~ 114 (158)
T PF10083_consen 44 NCSTPIRGDYHVE-GVFGLGGHYEAPSYCHNCGKPYPWTENALEAANELIEEDEELSPDEKEQFKESLPDLT 114 (158)
T ss_pred CCCCCCCCceecC-CeeeeCCCCCCChhHHhCCCCCchHHHHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHh
Confidence 3678888988775 54432 3433333332 23333 3 899999999999986663
No 87
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=25.75 E-value=96 Score=20.59 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=18.6
Q ss_pred eeEEecCCCCHHHHHHHHHHHHHH
Q psy17699 88 VTHIVNQPLTQEEIEKLKKSAQAI 111 (149)
Q Consensus 88 Ve~vl~l~Ls~eEqe~L~~Sa~~I 111 (149)
-+-.+++.||++|++.++.-|..+
T Consensus 18 ~~l~f~p~lt~~eR~~vH~~a~~~ 41 (60)
T cd02640 18 RDMVFSPEFSKEERALIHQIAQKY 41 (60)
T ss_pred ceEEcCCCCCHHHHHHHHHHHHHc
Confidence 344667789999999999877653
No 88
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=25.22 E-value=38 Score=19.61 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=16.6
Q ss_pred ecCCCCHHHHHHHHHHHHHHH
Q psy17699 92 VNQPLTQEEIEKLKKSAQAIS 112 (149)
Q Consensus 92 l~l~Ls~eEqe~L~~Sa~~Ik 112 (149)
+.+.|++++.++|++-|+...
T Consensus 2 iti~l~~~~~~~l~~~a~~~g 22 (39)
T PF01402_consen 2 ITIRLPDELYERLDELAKELG 22 (39)
T ss_dssp EEEEEEHHHHHHHHHHHHHHT
T ss_pred eEEEeCHHHHHHHHHHHHHHC
Confidence 456789999999999886554
No 89
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=25.06 E-value=1.1e+02 Score=20.48 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=18.6
Q ss_pred eEEecCCCCHHHHHHHHHHHHHH
Q psy17699 89 THIVNQPLTQEEIEKLKKSAQAI 111 (149)
Q Consensus 89 e~vl~l~Ls~eEqe~L~~Sa~~I 111 (149)
+-+++++||++|++-++.-|..+
T Consensus 19 eL~Fp~~ls~~eRriih~la~~l 41 (60)
T cd02639 19 ELAFPSSLSPAERRIVHLLASRL 41 (60)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHc
Confidence 44668899999999999877654
No 90
>KOG3176|consensus
Probab=24.12 E-value=1.3e+02 Score=25.42 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=32.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhhh
Q psy17699 93 NQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQ 128 (149)
Q Consensus 93 ~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~~ 128 (149)
+--||++|.+-.++-+..+.+.+.+....+.|+-.|
T Consensus 120 ~~~LS~~E~kfa~~~a~~~~k~~~~~~l~~mp~~~~ 155 (223)
T KOG3176|consen 120 LSLLSEEELKFAEEYADILKKHFVDVVLQKMPENLQ 155 (223)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 457999999999999999999999999999998444
No 91
>PF13487 HD_5: HD domain; PDB: 3TMD_A 3TM8_B 3TMC_A 3TMB_B.
Probab=23.92 E-value=78 Score=20.53 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
+||++|++.+++-...-.+.++++
T Consensus 2 ~Lt~~e~~~~~~Hp~~~~~~l~~~ 25 (64)
T PF13487_consen 2 KLTPEEREIIQQHPEYGAELLSQI 25 (64)
T ss_dssp GS-HHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcc
Confidence 589999999998876666555443
No 92
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=23.71 E-value=1.1e+02 Score=26.70 Aligned_cols=44 Identities=9% Similarity=0.134 Sum_probs=33.7
Q ss_pred EEcCCceeEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 82 VMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 82 vIGr~GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
++....+...+..--|++|.+.++++++...+.++.+.+.+-|-
T Consensus 145 ~~d~~~~~~~lR~iKs~~EI~~lr~A~~i~~~~~~~~~~~i~pG 188 (391)
T TIGR02993 145 FVDATALVNWQRAVKSETEISYMRVAARIVEKMHQRIFERIEPG 188 (391)
T ss_pred EEehHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444555566778899999999999999888888877766553
No 93
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=23.67 E-value=1.4e+02 Score=19.55 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
.||++|++.+.+-++..++.+..-.
T Consensus 42 ~ls~~eK~~y~~~a~~~k~~y~~~~ 66 (72)
T cd01388 42 ALSNEEKQPYYEEAKKLKELHMKLY 66 (72)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 6899999999999998888776544
No 94
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=23.66 E-value=85 Score=25.85 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=25.7
Q ss_pred EEEcCCceeEE--ecCCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhc
Q psy17699 81 CVMADNGVTHI--VNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQL 129 (149)
Q Consensus 81 ~vIGr~GVe~v--l~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~~~ 129 (149)
.+|+.+|--.+ -.++||+++++++.+ |..-+.+++|++-++
T Consensus 26 ~~I~~~g~L~i~G~~v~L~~~Q~q~l~~--------Y~~~lr~~lP~~~~~ 68 (229)
T PF11101_consen 26 LRIDPDGNLFINGKKVSLNAEQQQALQQ--------YQQGLRQQLPWVVQL 68 (229)
T ss_pred EEEcCCCcEEECCEEccCCHHHHHHHHH--------HHHHHHHHhHHHHHH
Confidence 34555553222 257999999999988 444455556665544
No 95
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=23.62 E-value=14 Score=25.52 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDY 115 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i 115 (149)
..||++|+++|..+...||+.+
T Consensus 18 ~~Ls~ed~~~L~~~l~~vr~~L 39 (79)
T PF08938_consen 18 DELSPEDQAQLYSCLPQVREVL 39 (79)
T ss_dssp HH-TCHHHHHHCHHCCCHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHHHHH
Confidence 4699999999999998888764
No 96
>cd04757 Commd9 COMM_Domain containing protein 9. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=23.60 E-value=1.3e+02 Score=22.66 Aligned_cols=31 Identities=10% Similarity=0.158 Sum_probs=26.9
Q ss_pred eEEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 89 THIVNQPLTQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 89 e~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
.+.+.++||.||...+-.+...||+.+..+.
T Consensus 77 ~~~v~~ELsKe~l~tml~~L~~i~~QL~~va 107 (108)
T cd04757 77 LSTLTMELSKETLDTMLDGLGRIRDQLSAVA 107 (108)
T ss_pred cceEEEEcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566789999999999999999999987653
No 97
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=23.37 E-value=1.5e+02 Score=18.38 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
.|+++|++.+.+-++..++.+..
T Consensus 41 ~ls~~eK~~y~~~a~~~~~~y~~ 63 (66)
T cd01390 41 ELSEEEKKKYEEKAEKDKERYEK 63 (66)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999888887776654
No 98
>PF09274 ParG: ParG; InterPro: IPR015354 This entry represents plasmid partition proteins; it adopts a ribbon-helix-helix fold, with a core of four alpha-helices. The proteins are an essential component of the DNA partition complex of the multi drug resistance plasmid TP228 []. ; PDB: 1P94_B.
Probab=23.30 E-value=90 Score=22.12 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=26.4
Q ss_pred CceeEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhchhh
Q psy17699 86 NGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIP 124 (149)
Q Consensus 86 ~GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~ 124 (149)
.|-.+.+..+++++.-.+|+..|..--..+.++++.||-
T Consensus 31 s~k~Krvtv~i~EelH~r~K~~ca~~G~sisdvv~eLid 69 (76)
T PF09274_consen 31 SEKTKRVTVNIDEELHRRFKAACAKQGTSISDVVRELID 69 (76)
T ss_dssp TTTEEEE-EEEEHHHHHHHHHHHHHHT--HHHHHHHHHH
T ss_pred ccceEEEEEecCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 566788899999999999999986554445554444443
No 99
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=23.26 E-value=1.3e+02 Score=29.70 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhccceeecceee
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQLGQVQYSSCRH 139 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~~~~~~~~~~~~~ 139 (149)
.++.+|.+.|.+-+..-.+.+..--.+||||+|-|=.+..++.+.
T Consensus 463 TI~k~E~~~l~~iLp~Y~~hv~~n~~TLL~kf~Gl~~i~~~~g~k 507 (765)
T PLN03185 463 TLRKSEVKVLLRMLPDYHHHVKTYENTLITKFFGLHRIKPSSGQK 507 (765)
T ss_pred ecCHHHHHHHHHHHHHHHHHHhhCCCcchhhheEEEEEEeCCCcE
Confidence 579999999987665555555555679999999998887665543
No 100
>PF02251 PA28_alpha: Proteasome activator pa28 alpha subunit; InterPro: IPR003185 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the alpha subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_K.
Probab=23.09 E-value=1.4e+02 Score=20.18 Aligned_cols=36 Identities=19% Similarity=0.473 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhchhh-hhhhccce
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYFLTTYIP-KIFQLGQV 132 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~~~~~~~-~~~~~~~~ 132 (149)
+++-+++++.--+.|.+.-+.+...++| ||.+|.+.
T Consensus 2 ~~e~~~kV~~fr~~l~~eAE~Lv~~~fP~KI~eLd~l 38 (64)
T PF02251_consen 2 SPENKKKVDEFRQSLTKEAENLVSNFFPQKIVELDEL 38 (64)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 4555667777777788888888888888 57776543
No 101
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=22.82 E-value=1.8e+02 Score=21.23 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=25.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 93 NQPLTQEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 93 ~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
.=.||++|.+++-.+...+.+.+.++.+.+
T Consensus 39 ~G~Lse~qiErlG~tLm~Le~~~~~l~~~~ 68 (88)
T PF05121_consen 39 AGSLSEEQIERLGETLMKLEEAMEELCERF 68 (88)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 348999999999999999999988877653
No 102
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=22.80 E-value=1.2e+02 Score=23.91 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhhhh
Q psy17699 100 EIEKLKKSAQAISQDYMYFLTTYIPKIFQ 128 (149)
Q Consensus 100 Eqe~L~~Sa~~Ik~~i~~~~~~~~~~~~~ 128 (149)
||.++-.-+..--+.|...+.+|+|||-.
T Consensus 84 eqn~~ln~vn~~l~~in~~l~~ylpkits 112 (177)
T PF12495_consen 84 EQNQMLNNVNNQLNSINSMLNTYLPKITS 112 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44444444444445678889999999853
No 103
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=22.58 E-value=2.2e+02 Score=18.22 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=32.0
Q ss_pred ceEEEeeEEEcCC--ceeEEe----cCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 74 EVFLSLPCVMADN--GVTHIV----NQPLTQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 74 dV~lSvP~vIGr~--GVe~vl----~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
.-++.+|...+.. |+-.+. +-.++++|++.|+..++.+...++...
T Consensus 92 ~s~~~~Pl~~~~~~~G~l~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~ 143 (149)
T smart00065 92 RSFLAVPLVADGELVGVLALHNKDSPRPFTEEDEELLQALANQLAIALANAQ 143 (149)
T ss_pred eeEEEeeeeecCEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999887532 332222 347899999999998888877766543
No 104
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=22.42 E-value=1.6e+02 Score=23.73 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKI 126 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~ 126 (149)
..|+++|++.|+.=...+-+-|..+...|.-|-
T Consensus 24 ~~LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKe 56 (162)
T PF04201_consen 24 EGLSEEEREELRSELAKVEEEIQTLRQVLAAKE 56 (162)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999998877766666666655555443
No 105
>PRK11409 antitoxin YefM; Provisional
Probab=22.23 E-value=1.5e+02 Score=20.65 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=19.2
Q ss_pred EeeEEEcCCceeEEecCCCCHHHHHHHHHHHH
Q psy17699 78 SLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQ 109 (149)
Q Consensus 78 SvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa~ 109 (149)
.-|++|.|+|-...+ -+|.+|.+.+++.+.
T Consensus 24 ~epv~ITr~g~~~~V--l~S~~~yesl~Etl~ 53 (83)
T PRK11409 24 HAPILITRQNGEACV--LMSLEEYNSLEETAY 53 (83)
T ss_pred CCcEEEEeCCCCCEE--EEeHHHHHHHHHHHH
Confidence 358888888854543 356666666666643
No 106
>PF02686 Glu-tRNAGln: Glu-tRNAGln amidotransferase C subunit; InterPro: IPR003837 Glu-tRNAGln amidotransferase is a heterotrimeric enzyme that is required for correct decoding of glutamine codons during translation. The Glu-tRNA Gln amidotransferase enzyme is an important translational fidelity mechanism replacing incorrectly charged Glu-tRNAGln with the correct Gln-tRANGln via transmidation of the misacylated Glu-tRNAGln []. This activity supplements the lack of glutaminyl-tRNA synthetase activity in Gram-positive eubacteria, cyanobacteria, archaea, and organelles [].; GO: 0006450 regulation of translational fidelity; PDB: 2DQN_C 3IP4_C 2G5I_C 2F2A_C 2G5H_C 2DF4_C 3AL0_C 3KFU_G 3H0R_I 3H0L_U ....
Probab=22.19 E-value=86 Score=20.45 Aligned_cols=24 Identities=38% Similarity=0.375 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
|+++|.++|.+-.+.|-+.++++.
T Consensus 1 l~eeE~~~~~~~l~~il~~~~~l~ 24 (72)
T PF02686_consen 1 LTEEELEKLTKQLNDILDYVEKLQ 24 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHTTGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999888887777766543
No 107
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=22.05 E-value=1.2e+02 Score=22.33 Aligned_cols=35 Identities=17% Similarity=0.451 Sum_probs=31.6
Q ss_pred ceEEEeeEEEcCCceeEEecCCCCHHHHHHHHHHH
Q psy17699 74 EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSA 108 (149)
Q Consensus 74 dV~lSvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa 108 (149)
++|+++|..=.++|=-+-+--|.|.+-++++++++
T Consensus 42 GlfVAMPSrrt~dgEFrDI~HPI~~~~R~kIq~aV 76 (95)
T COG2088 42 GLFVAMPSRRTPDGEFRDIAHPINSDTREKIQDAV 76 (95)
T ss_pred ceEEEccCccCCCcchhhccCcCCHHHHHHHHHHH
Confidence 78999999999999888777899999999998875
No 108
>PF10339 Vel1p: Yeast-specific zinc responsive; InterPro: IPR019435 This entry represents putative velum formation proteins found in fungi. They are of unknown function but are highly induced in zinc-depleted conditions and have increased expression in NAP1 deletion mutants [].
Probab=21.60 E-value=72 Score=26.21 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=41.6
Q ss_pred eeeeccCcCCCccceEEEeeEEEcCCceeEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhccceeecceeeE
Q psy17699 61 EKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQLGQVQYSSCRHI 140 (149)
Q Consensus 61 vS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (149)
|++|+-..-|.+ +.|+|.-..||.+ .|.+|+....+.+-.--.++||+++..+.-+-.+-+-.
T Consensus 34 CGTY~lkV~g~n-~tflGq~~fVGad----------------aLt~~a~daw~R~L~qE~RfiPrLtTv~~N~T~nF~P~ 96 (203)
T PF10339_consen 34 CGTYLLKVVGQN-GTFLGQKTFVGAD----------------ALTESAGDAWGRYLEQETRFIPRLTTVAENETKNFSPF 96 (203)
T ss_pred cccEEEEEeccC-CcEeeeeeeechh----------------hhccchhHHHHHHhccCcccccceeeeeccCCCcccce
Confidence 445554444555 7788888777754 45556655555555567899999998876554444444
Q ss_pred EEE
Q psy17699 141 VIE 143 (149)
Q Consensus 141 ~~~ 143 (149)
+.-
T Consensus 97 ~fT 99 (203)
T PF10339_consen 97 IFT 99 (203)
T ss_pred EEe
Confidence 433
No 109
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=21.42 E-value=1.7e+02 Score=21.02 Aligned_cols=27 Identities=30% Similarity=0.238 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
..|+++|+..|-..+..+.+.+++...
T Consensus 49 ~~L~~~e~~~l~~~~~~v~~~l~~~~~ 75 (126)
T cd01275 49 EDLTPEEIADLFKLVQLAMKALKVVYK 75 (126)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 478999999999888887777766653
No 110
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=21.41 E-value=58 Score=22.88 Aligned_cols=41 Identities=29% Similarity=0.374 Sum_probs=28.9
Q ss_pred cCCCCH-HHHHHHHHHHHHHHHHHHHHHhchhh-hhhhccceeecceee
Q psy17699 93 NQPLTQ-EEIEKLKKSAQAISQDYMYFLTTYIP-KIFQLGQVQYSSCRH 139 (149)
Q Consensus 93 ~l~Ls~-eEqe~L~~Sa~~Ik~~i~~~~~~~~~-~~~~~~~~~~~~~~~ 139 (149)
...|++ .|.+.|..+|++=+.-+ ..- |+|.||+|.-|--++
T Consensus 27 ~y~L~~~~e~~~f~~AaDHR~AEL------~~~~kLyD~gkVP~sVW~~ 69 (71)
T PRK10391 27 NYTLTDDQEIINMYRAADHRRAEL------VSGGRLFDLGQVPKSVWHY 69 (71)
T ss_pred hcccCCHHHHHHHHHHHHHHHHHH------HhCccccccccCCHHHHHh
Confidence 567886 99999999888755432 233 889999887654433
No 111
>PF15337 Vasculin: Vascular protein family Vasculin-like 1
Probab=21.37 E-value=1.1e+02 Score=22.65 Aligned_cols=22 Identities=18% Similarity=0.527 Sum_probs=19.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q psy17699 93 NQPLTQEEIEKLKKSAQAISQD 114 (149)
Q Consensus 93 ~l~Ls~eEqe~L~~Sa~~Ik~~ 114 (149)
-+||+++|.+.|+.-.+.+|.+
T Consensus 31 ~~PlTEDElkEF~~kseQlrrN 52 (97)
T PF15337_consen 31 CLPLTEDELKEFQVKSEQLRRN 52 (97)
T ss_pred cCcCcHHHHHHHHHHHHHHHHc
Confidence 3699999999999988888865
No 112
>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.
Probab=21.33 E-value=2e+02 Score=18.60 Aligned_cols=30 Identities=7% Similarity=0.175 Sum_probs=23.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 93 NQPLTQEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 93 ~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
.-.|+..|...++..++..-+....+.++|
T Consensus 34 ~~~L~~~E~~Ci~~C~~ky~~~~~~v~~~~ 63 (66)
T PF02953_consen 34 SSSLSSKEESCIDNCVDKYIDTNQFVSKRF 63 (66)
T ss_dssp SSS--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999888887777665
No 113
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=21.21 E-value=2.1e+02 Score=19.38 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=18.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 93 NQPLTQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 93 ~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
.+.||++.++++++-.+.-++....+.
T Consensus 39 ~l~Lt~eQ~~~l~~~~~~~~~~~~~~r 65 (125)
T PF13801_consen 39 MLNLTPEQQAKLRALMDEFRQEMRALR 65 (125)
T ss_dssp HS-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999887655554444443
No 114
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=20.67 E-value=76 Score=21.32 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=25.6
Q ss_pred EecCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17699 91 IVNQPLTQEEIEKLKKSAQAISQDYMYFLTT 121 (149)
Q Consensus 91 vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~ 121 (149)
.+++..++++.+.+++.++.|.+.+.++.+.
T Consensus 10 ~y~i~~~~~~ee~l~~~a~~i~~~i~~~~~~ 40 (89)
T PF05164_consen 10 EYRIKCPDEDEEYLRKAAELINEKINEIKKK 40 (89)
T ss_dssp EEEECETGCGHHHHHHHHHHHHHHHHHHCTT
T ss_pred EEEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455557888899999999999999998776
No 115
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=20.44 E-value=1.3e+02 Score=23.32 Aligned_cols=28 Identities=21% Similarity=0.352 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
.|||+|-++|++=++.=.+.++++++.+
T Consensus 7 ~lsp~eF~qLq~y~eys~kklkdvl~eF 34 (138)
T PF14513_consen 7 SLSPEEFAQLQKYSEYSTKKLKDVLKEF 34 (138)
T ss_dssp -S-HHHHHHHHHHHHH----HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999987765555555555443
No 116
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=20.37 E-value=75 Score=23.81 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHHHH
Q psy17699 95 PLTQEEIEKLKKSA 108 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa 108 (149)
.|||+|+++|.+.+
T Consensus 89 ~l~~eE~~~L~~ei 102 (104)
T PF11460_consen 89 ELSPEELEALQAEI 102 (104)
T ss_pred hCCHHHHHHHHHHh
Confidence 68999998887754
No 117
>PF08899 DUF1844: Domain of unknown function (DUF1844); InterPro: IPR014995 This group of proteins are functionally uncharacterised.
Probab=20.15 E-value=1.3e+02 Score=21.17 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=17.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q psy17699 93 NQPLTQEEIEKLKKSAQAISQ 113 (149)
Q Consensus 93 ~l~Ls~eEqe~L~~Sa~~Ik~ 113 (149)
.=+|+++|++.|+...-.+|-
T Consensus 52 kGNL~~~E~~lL~~~L~eLRm 72 (74)
T PF08899_consen 52 KGNLDEEEERLLESALYELRM 72 (74)
T ss_pred ccCCCHHHHHHHHHHHHHHhh
Confidence 348999999999988777764
Done!