Query psy17699
Match_columns 149
No_of_seqs 141 out of 1306
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 20:44:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x0j_A Malate dehydrogenase; o 99.9 2.4E-26 8.3E-31 192.8 9.3 97 18-118 195-292 (294)
2 3pqe_A L-LDH, L-lactate dehydr 99.9 1.1E-25 3.9E-30 190.5 7.9 98 18-118 215-313 (326)
3 3vku_A L-LDH, L-lactate dehydr 99.9 1.3E-25 4.4E-30 190.5 7.8 98 18-118 218-316 (326)
4 3tl2_A Malate dehydrogenase; c 99.9 3.5E-25 1.2E-29 186.6 9.6 97 18-117 214-313 (315)
5 3gvi_A Malate dehydrogenase; N 99.9 9E-25 3.1E-29 184.9 12.0 99 19-120 217-318 (324)
6 1oju_A MDH, malate dehydrogena 99.9 4E-25 1.4E-29 184.7 9.4 97 18-118 195-292 (294)
7 3nep_X Malate dehydrogenase; h 99.9 8.5E-25 2.9E-29 184.4 10.9 101 18-121 205-307 (314)
8 4aj2_A L-lactate dehydrogenase 99.9 8.7E-25 3E-29 185.8 10.4 97 18-116 230-327 (331)
9 3p7m_A Malate dehydrogenase; p 99.9 2E-24 7E-29 182.1 11.9 99 19-120 215-317 (321)
10 3ldh_A Lactate dehydrogenase; 99.9 2.6E-24 8.8E-29 183.4 5.4 98 18-118 211-328 (330)
11 1o6z_A MDH, malate dehydrogena 99.9 1.2E-22 4E-27 168.7 11.1 98 18-118 204-302 (303)
12 1ldn_A L-lactate dehydrogenase 99.9 7.2E-23 2.5E-27 170.9 9.8 99 18-119 216-315 (316)
13 1ez4_A Lactate dehydrogenase; 99.9 1.2E-22 4.2E-27 170.5 10.9 101 18-121 213-314 (318)
14 1guz_A Malate dehydrogenase; o 99.9 1.6E-22 5.4E-27 168.0 10.1 99 19-120 206-307 (310)
15 2xxj_A L-LDH, L-lactate dehydr 99.9 1.8E-22 6.2E-27 168.7 10.3 98 18-118 210-308 (310)
16 2zqz_A L-LDH, L-lactate dehydr 99.9 2.1E-22 7.1E-27 169.8 10.4 100 18-120 218-318 (326)
17 1ur5_A Malate dehydrogenase; o 99.9 3.1E-22 1.1E-26 166.6 11.4 98 19-119 207-307 (309)
18 1hye_A L-lactate/malate dehydr 99.9 3.5E-22 1.2E-26 166.3 11.7 98 19-119 212-311 (313)
19 2i6t_A Ubiquitin-conjugating e 99.9 2E-22 6.8E-27 168.6 10.1 99 18-118 201-301 (303)
20 2d4a_B Malate dehydrogenase; a 99.9 1.6E-22 5.4E-27 169.0 9.3 99 19-120 204-304 (308)
21 3d0o_A L-LDH 1, L-lactate dehy 99.9 2E-22 6.7E-27 168.6 9.9 99 18-119 215-314 (317)
22 1a5z_A L-lactate dehydrogenase 99.9 4.4E-22 1.5E-26 165.8 11.6 99 18-119 209-308 (319)
23 1y6j_A L-lactate dehydrogenase 99.9 1.9E-22 6.4E-27 169.0 8.7 102 15-119 214-316 (318)
24 1t2d_A LDH-P, L-lactate dehydr 99.9 6E-22 2E-26 166.4 10.3 99 18-119 218-317 (322)
25 5mdh_A Malate dehydrogenase; o 99.9 8E-22 2.7E-26 167.2 11.1 104 18-122 223-330 (333)
26 3hhp_A Malate dehydrogenase; M 99.9 1.2E-21 3.9E-26 165.1 10.5 98 18-120 203-308 (312)
27 1pzg_A LDH, lactate dehydrogen 99.9 1.6E-21 5.5E-26 164.1 11.3 99 19-120 225-326 (331)
28 3fi9_A Malate dehydrogenase; s 99.9 4.1E-22 1.4E-26 170.0 7.7 109 19-132 219-332 (343)
29 2hjr_A Malate dehydrogenase; m 99.9 2E-21 7E-26 163.3 11.5 98 19-119 224-324 (328)
30 2v6b_A L-LDH, L-lactate dehydr 99.9 1.4E-21 4.6E-26 162.2 9.9 94 18-118 208-302 (304)
31 1y7t_A Malate dehydrogenase; N 99.9 2.1E-21 7.1E-26 161.0 10.0 102 19-121 220-324 (327)
32 2ewd_A Lactate dehydrogenase,; 99.8 1.6E-20 5.3E-25 155.6 12.3 98 20-120 215-315 (317)
33 7mdh_A Protein (malate dehydro 99.8 6.2E-21 2.1E-25 165.2 10.1 102 18-124 248-357 (375)
34 1hyh_A L-hicdh, L-2-hydroxyiso 99.8 1.2E-20 4E-25 155.7 11.0 99 17-122 210-309 (309)
35 1b8p_A Protein (malate dehydro 99.8 1E-20 3.6E-25 158.4 10.2 102 18-121 223-327 (329)
36 1mld_A Malate dehydrogenase; o 99.8 1.8E-20 6.1E-25 156.7 8.5 100 18-120 203-308 (314)
37 1smk_A Malate dehydrogenase, g 99.8 9.5E-20 3.3E-24 152.8 11.0 97 18-119 211-315 (326)
38 1lld_A L-lactate dehydrogenase 99.7 7.3E-17 2.5E-21 131.8 10.0 97 19-118 220-317 (319)
39 4h7p_A Malate dehydrogenase; s 99.7 1.3E-17 4.3E-22 142.6 5.3 97 17-116 239-341 (345)
40 1up7_A 6-phospho-beta-glucosid 99.7 5E-16 1.7E-20 135.3 12.7 106 19-128 268-385 (417)
41 1s6y_A 6-phospho-beta-glucosid 99.6 8.7E-15 3E-19 128.6 12.0 98 21-120 291-400 (450)
42 1u8x_X Maltose-6'-phosphate gl 99.5 2E-14 6.8E-19 127.2 11.1 88 31-120 330-424 (472)
43 3fef_A Putative glucosidase LP 99.1 5.8E-10 2E-14 98.3 11.5 86 40-127 326-412 (450)
44 1obb_A Maltase, alpha-glucosid 97.5 0.00075 2.6E-08 59.8 11.1 79 40-120 354-435 (480)
45 3u95_A Glycoside hydrolase, fa 97.3 0.0013 4.3E-08 58.0 10.2 57 40-98 344-401 (477)
46 3fgh_A Transcription factor A, 60.4 13 0.00046 23.1 4.2 29 95-123 39-67 (67)
47 1bin_A Leghemoglobin A; heme, 60.3 10 0.00034 26.5 4.0 34 94-127 1-34 (143)
48 2it9_A Hypothetical protein; s 55.6 20 0.0007 26.6 5.0 43 79-125 21-63 (127)
49 2l3l_A Tubulin-specific chaper 54.9 14 0.00047 26.5 3.9 32 94-125 79-110 (111)
50 2vhb_A Hemoglobin; heme, respi 52.1 16 0.00055 25.7 3.9 33 95-127 1-33 (146)
51 2wy4_A Single domain haemoglob 49.3 23 0.00077 24.6 4.3 33 96-128 1-33 (140)
52 2ba3_A NIKA; dimer, bacterial 49.1 7.5 0.00026 23.3 1.5 22 90-111 16-37 (51)
53 4e17_B Catenin alpha-1; four h 48.9 17 0.00059 22.0 3.0 28 98-125 11-38 (40)
54 1v63_A Nucleolar transcription 48.7 24 0.00083 24.2 4.3 33 95-127 47-79 (101)
55 4b4y_A Neuroglobin; transport 47.5 18 0.0006 26.1 3.6 35 93-127 6-40 (154)
56 2nvn_A Hypothetical protein; s 42.8 20 0.00067 26.5 3.2 44 78-125 22-65 (122)
57 3lay_A Zinc resistance-associa 42.8 29 0.001 26.7 4.3 43 87-129 59-101 (175)
58 1b0b_A Hemoglobin; hemoprotein 42.8 37 0.0013 23.8 4.6 33 95-127 1-33 (142)
59 2lhb_A Hemoglobin V (cyano Met 41.7 33 0.0011 24.3 4.3 34 94-127 9-42 (149)
60 1mba_A Myoglobin; oxygen stora 41.7 31 0.0011 24.3 4.1 31 95-125 2-32 (147)
61 1gdj_A Leghemoglobin (deoxy); 41.2 25 0.00086 24.8 3.5 33 95-127 2-34 (153)
62 2i9z_A Putative septation prot 40.9 37 0.0013 24.3 4.3 35 74-108 45-79 (105)
63 2eqz_A High mobility group pro 40.0 39 0.0013 22.0 4.1 28 95-122 58-85 (86)
64 2i9x_A Putative septation prot 38.4 37 0.0013 23.4 3.9 35 74-108 45-79 (87)
65 3kp7_A Transcriptional regulat 38.4 40 0.0014 23.2 4.2 26 95-120 124-149 (151)
66 3pt8_A Hemoglobin II; oxygen c 38.0 30 0.001 24.5 3.6 33 95-127 3-35 (152)
67 3ubc_A Hemoglobin-like flavopr 37.7 27 0.00094 24.1 3.2 33 96-128 1-33 (131)
68 3tb5_A Methionine aminopeptida 37.5 33 0.0011 26.6 3.9 29 97-125 6-34 (264)
69 4aik_A Transcriptional regulat 37.5 23 0.0008 25.1 2.9 27 94-120 116-142 (151)
70 3g46_A Globin-1; oxygen transp 37.4 29 0.00098 24.7 3.3 33 95-127 9-41 (146)
71 3pt8_B Hemoglobin III; oxygen 36.3 34 0.0012 24.3 3.6 34 94-127 2-35 (152)
72 1v64_A Nucleolar transcription 35.9 47 0.0016 23.0 4.2 33 95-127 54-86 (108)
73 2qyb_A Membrane protein, putat 35.6 90 0.0031 21.2 5.7 45 74-118 108-159 (181)
74 2w72_C Human hemoglobin A; iro 34.1 33 0.0011 24.0 3.2 32 96-127 2-33 (141)
75 1x3k_A Hemoglobin component V; 33.8 41 0.0014 24.1 3.7 24 94-117 3-26 (152)
76 1it2_A Hemoglobin; hagfish, de 33.8 41 0.0014 23.9 3.7 34 94-127 9-42 (146)
77 1cg5_A Protein (hemoglobin); o 33.8 46 0.0016 23.5 3.9 32 96-127 2-33 (141)
78 1lj9_A Transcriptional regulat 33.6 56 0.0019 22.0 4.3 27 94-120 113-139 (144)
79 1jeb_A Hemoglobin zeta chain; 33.5 30 0.001 24.3 2.9 33 95-127 2-34 (142)
80 1gt0_D Transcription factor SO 32.4 50 0.0017 21.0 3.6 28 95-122 43-70 (80)
81 1hry_A Human SRY; DNA, DNA-bin 32.3 51 0.0017 20.7 3.6 27 95-121 45-71 (76)
82 2k9i_A Plasmid PRN1, complete 32.2 52 0.0018 19.2 3.4 24 87-110 7-30 (55)
83 2cs1_A PMS1 protein homolog 1; 31.9 33 0.0011 22.8 2.7 33 95-127 48-80 (92)
84 1wmu_A Hemoglobin D alpha chai 31.4 39 0.0013 23.7 3.2 32 96-127 2-33 (141)
85 1hlb_A Hemoglobin (deoxy); oxy 31.2 34 0.0012 24.4 2.9 23 94-116 11-33 (158)
86 2co9_A Thymus high mobility gr 31.0 67 0.0023 21.7 4.3 31 95-125 58-88 (102)
87 1qxy_A Methionyl aminopeptidas 30.9 48 0.0017 25.3 3.9 30 96-125 4-33 (252)
88 3mx6_A Methionine aminopeptida 30.8 50 0.0017 25.6 4.0 30 96-125 9-38 (262)
89 1aab_A High mobility group pro 30.6 35 0.0012 22.0 2.6 30 95-124 50-79 (83)
90 2w31_A Globin; oxygen transpor 30.6 39 0.0013 24.0 3.1 35 94-128 11-45 (162)
91 2ia9_A Putative septation prot 30.1 56 0.0019 23.1 3.8 35 74-108 45-79 (100)
92 1of9_A Pore-forming peptide am 30.0 13 0.00046 24.2 0.4 40 89-129 16-60 (77)
93 1jf3_A Monomer hemoglobin comp 29.9 41 0.0014 23.6 3.1 33 95-127 1-35 (147)
94 1hlm_A Hemoglobin (cyano Met); 29.6 27 0.00093 24.9 2.1 34 94-127 11-44 (159)
95 2c0k_A Hemoglobin; oxygen tran 29.5 47 0.0016 23.6 3.4 22 96-117 1-22 (151)
96 4hbl_A Transcriptional regulat 29.2 65 0.0022 22.1 4.0 27 94-120 122-148 (149)
97 1out_A Hemoglobin I; heme, oxy 28.9 48 0.0017 23.5 3.4 27 95-121 2-28 (143)
98 3e0y_A Conserved domain protei 28.5 1.3E+02 0.0045 19.9 6.2 43 74-117 118-166 (181)
99 3bom_A Hemoglobin subunit alph 28.3 50 0.0017 23.3 3.4 23 95-117 2-24 (143)
100 2yqk_A Arginine-glutamic acid 28.2 27 0.00093 22.1 1.7 34 91-124 7-40 (63)
101 2crj_A SWI/SNF-related matrix- 28.2 51 0.0017 21.8 3.2 30 95-124 48-77 (92)
102 2nw5_A Methionine aminopeptida 28.1 45 0.0015 28.0 3.5 66 48-125 5-71 (360)
103 3ksh_A Putative uncharacterize 27.8 1.5E+02 0.0051 21.8 6.0 42 74-115 113-159 (160)
104 1j46_A SRY, sex-determining re 27.5 67 0.0023 20.8 3.6 28 95-122 45-72 (85)
105 1o0x_A Methionine aminopeptida 27.4 53 0.0018 25.6 3.6 33 92-124 13-45 (262)
106 2lef_A LEF-1 HMG, protein (lym 27.4 69 0.0024 20.7 3.7 29 95-123 43-71 (86)
107 2gg2_A Methionine aminopeptida 27.3 63 0.0021 24.9 4.0 30 95-124 4-33 (263)
108 2dc3_A Cytoglobin; myoglobin, 27.2 58 0.002 24.4 3.7 34 94-127 20-53 (193)
109 3u2b_C Transcription factor SO 27.0 65 0.0022 20.3 3.4 28 95-122 43-70 (79)
110 1g6u_A Domain swapped dimer; d 26.9 1.1E+02 0.0036 18.7 4.1 26 95-120 16-41 (48)
111 1ufz_A Hypothetical protein BA 26.9 49 0.0017 22.8 2.9 24 94-117 24-47 (83)
112 4a3n_A Transcription factor SO 26.8 40 0.0014 20.8 2.3 24 95-118 43-66 (71)
113 1ckt_A High mobility group 1 p 26.8 34 0.0012 21.2 2.0 28 95-122 44-71 (71)
114 2oif_A Horvu GLB1, non-legume 26.7 27 0.00093 24.9 1.6 34 94-127 8-41 (162)
115 4euw_A Transcription factor SO 26.7 68 0.0023 21.9 3.7 28 95-122 70-97 (106)
116 1a6m_A Myoglobin; heme protein 26.6 52 0.0018 23.4 3.2 27 96-122 2-28 (151)
117 3d1k_A Hemoglobin subunit alph 26.3 54 0.0019 23.0 3.2 22 96-117 2-23 (142)
118 4hrt_A Globin-2 A chain; oxyge 26.2 42 0.0014 24.0 2.6 27 93-119 8-34 (150)
119 1lhs_A Myoglobin; oxygen stora 26.2 57 0.002 23.3 3.4 27 95-121 1-27 (153)
120 4fuk_A Methionine aminopeptida 26.1 41 0.0014 27.5 2.8 30 97-126 65-94 (337)
121 3f27_D Transcription factor SO 26.1 71 0.0024 20.4 3.5 28 95-122 47-74 (83)
122 3fh3_A Putative ECF-type sigma 26.0 74 0.0025 24.4 4.0 36 84-121 60-95 (158)
123 3mkb_A Hemoglobin subunit alph 25.8 74 0.0025 22.7 3.9 33 95-127 1-33 (140)
124 1spg_A Hemoglobin; carbon mono 25.4 46 0.0016 23.7 2.7 23 95-117 2-24 (144)
125 1l8y_A Upstream binding factor 25.3 63 0.0021 22.3 3.3 32 95-126 44-75 (91)
126 2w3g_A DOSS, two component sen 25.0 1.4E+02 0.0048 19.1 6.5 44 74-118 96-146 (153)
127 1pcf_A P15, transcriptional co 25.0 39 0.0013 22.1 2.0 55 56-117 8-65 (66)
128 4e18_B Catenin alpha-1; four h 25.0 57 0.002 21.2 2.8 27 99-125 31-57 (59)
129 2gk9_A Phosphatidylinositol-4- 24.8 52 0.0018 28.2 3.3 44 95-138 124-168 (392)
130 3pka_A Methionine aminopeptida 24.8 73 0.0025 25.2 4.0 34 92-125 38-71 (285)
131 3leq_A Uncharacterized protein 24.8 1.6E+02 0.0055 20.7 5.5 54 82-145 24-77 (126)
132 3ip4_C Aspartyl/glutamyl-tRNA( 24.7 61 0.0021 22.3 3.1 28 92-119 16-43 (100)
133 3g5o_A Uncharacterized protein 24.7 92 0.0032 21.6 4.1 29 78-108 31-59 (108)
134 2r80_A Hemoglobin subunit alph 24.6 54 0.0018 23.2 2.9 23 96-118 2-24 (141)
135 1vhm_A Protein YEBR; structura 24.3 2.2E+02 0.0076 21.3 6.6 51 74-128 125-181 (195)
136 1xq5_A Hemoglobin alpha-1 chai 24.2 50 0.0017 23.3 2.7 29 95-123 2-30 (143)
137 1or4_A Heme-based aerotactic t 24.1 1.1E+02 0.0037 22.4 4.6 41 88-128 34-75 (178)
138 3deu_A Transcriptional regulat 24.1 64 0.0022 22.9 3.3 25 95-119 139-163 (166)
139 3tav_A Methionine aminopeptida 24.0 74 0.0025 25.1 3.9 32 94-125 33-64 (286)
140 2cto_A Novel protein; high mob 23.9 84 0.0029 21.4 3.7 23 95-117 52-74 (93)
141 2bk9_A CG9734-PA; oxygen trans 23.8 63 0.0022 22.9 3.2 17 96-112 1-17 (153)
142 1bb1_A Designed, thermostable 23.5 1.1E+02 0.0039 17.5 3.9 27 98-125 8-34 (36)
143 2ybx_A Phosphatidylinositol-5- 23.4 66 0.0023 27.5 3.7 44 95-138 135-179 (394)
144 3h0l_C Glutamyl-tRNA(Gln) amid 23.4 50 0.0017 22.5 2.4 28 92-119 14-41 (94)
145 3kfu_G Glutamyl-tRNA(Gln) amid 23.1 52 0.0018 22.4 2.5 27 92-118 18-44 (92)
146 4hrt_B Hemoglobin B chain; oxy 22.8 44 0.0015 23.9 2.2 35 93-127 10-44 (152)
147 2e4s_A CAMP and CAMP-inhibited 22.5 1.8E+02 0.0062 19.5 6.5 43 75-118 128-177 (189)
148 1x93_A Hypothetical protein HP 22.1 20 0.00068 22.9 0.1 38 90-127 2-39 (55)
149 2akf_A Coronin-1A; coiled coil 21.4 1.2E+02 0.0042 17.1 3.8 25 98-122 5-29 (32)
150 3bpv_A Transcriptional regulat 21.3 1.1E+02 0.0037 20.2 3.8 24 94-117 113-136 (138)
151 2b3h_A Methionine aminopeptida 21.3 91 0.0031 25.5 4.0 31 94-124 74-104 (329)
152 1yhu_C Hemoglobin B1A chain; g 21.2 41 0.0014 23.9 1.7 21 95-115 3-23 (148)
153 1x9f_B Erythrocruorin, globin 20.9 71 0.0024 22.4 2.9 20 95-114 3-22 (145)
154 2e6o_A HMG box-containing prot 20.8 93 0.0032 20.2 3.3 24 95-118 58-81 (87)
155 1hme_A High mobility group pro 20.8 55 0.0019 20.6 2.1 28 95-122 47-74 (77)
156 1wz6_A HMG-box transcription f 20.8 38 0.0013 21.8 1.3 26 95-120 48-73 (82)
157 2eo2_A Adult MALE hypothalamus 20.7 50 0.0017 22.2 1.9 22 85-106 39-60 (71)
158 3s2w_A Transcriptional regulat 20.7 94 0.0032 21.4 3.5 23 95-117 135-157 (159)
159 2yrq_A High mobility group pro 20.5 85 0.0029 22.9 3.4 30 95-124 58-87 (173)
160 3fm3_A Methionine aminopeptida 20.4 90 0.0031 25.9 3.9 35 91-125 35-69 (358)
161 1mc0_A 3',5'-cyclic nucleotide 20.4 2.5E+02 0.0084 21.6 6.2 44 74-117 287-337 (368)
162 1bb1_B Designed, thermostable 20.3 1.4E+02 0.0046 17.2 3.8 21 98-118 8-28 (36)
No 1
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=99.93 E-value=2.4e-26 Score=192.79 Aligned_cols=97 Identities=25% Similarity=0.290 Sum_probs=91.8
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.+.++++|+|| ++||+|+||||+++++|+++|++|+ ++++|||++++|+||++ |+|+|+||+||++|++ +++++|
T Consensus 195 ~~~~~~~g~eIi~~kGst~~a~a~a~~~~~~ail~d~--~~v~~~s~~l~g~yG~~-~v~~s~P~~lg~~Gve-i~~l~L 270 (294)
T 2x0j_A 195 ENDVRFVAAEVIKRKGATIFGPAVAIYRMVKAVVEDT--GEIIPTSMILQGEYGIE-NVAVGVPAKLGKNGAE-VADIKL 270 (294)
T ss_dssp HHHHHTHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTC--CCEEEEEEEEESGGGCE-EEEEEEEEEEETTEEE-ECCCCC
T ss_pred HHHHhhhheEEEecCcccchhHHHHHHHHHHHHHcCC--CcEEEEEEEEecCCCCc-cEEEEEEEEEeCCEEE-EeCCCC
Confidence 35689999999 9999999999999999999999996 89999999999999997 9999999999999995 889999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
|++|+++|++|++.||++++++
T Consensus 271 ~~~E~~~l~~s~~~lk~~i~~l 292 (294)
T 2x0j_A 271 SDEEIEKLRNSAKILRERLEEL 292 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998864
No 2
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=99.92 E-value=1.1e-25 Score=190.49 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=93.4
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.+.|+++|++| ++||+|+||||.|+++|+++|++|+ ++++|||++++|+||++ |+|+|+||+||++|++++++++|
T Consensus 215 ~~~v~~~g~eIi~~kG~t~~a~a~a~~~~~~ail~~~--~~v~~~s~~~~g~yg~~-~v~~s~P~~lg~~Gv~~iv~l~L 291 (326)
T 3pqe_A 215 VDDVKNAAYHIIEKKGATYYGVAMSLARITKAILHNE--NSILTVSTYLDGQYGAD-DVYIGVPAVVNRGGIAGITELNL 291 (326)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTC--CEEECCEEEEESGGGCE-EEEEECCEEEETTEEEEECCCCC
T ss_pred HHHHHhhhheeeeCCCCcHHHHHHHHHHHHHHHhcCC--CcEEEEEEeeccccCCC-ceEEEEEEEEcCCceEEEecCCC
Confidence 45689999999 9999999999999999999999996 89999999999999997 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
|++|+++|++|++.|++.++++
T Consensus 292 ~~~E~~~l~~s~~~l~~~~~~~ 313 (326)
T 3pqe_A 292 NEKEKEQFLHSAGVLKNILKPH 313 (326)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 3
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*
Probab=99.92 E-value=1.3e-25 Score=190.55 Aligned_cols=98 Identities=24% Similarity=0.310 Sum_probs=90.6
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.+.|+++|++| ++||+|+||||.++++|+++|++|+ +.++|||++++|+||++ |+|+|+||+||++|++++++++|
T Consensus 218 ~~~v~~~g~eIi~~kG~t~~a~a~a~~~~~~ail~~~--~~v~~~s~~~~g~yg~~-~v~~s~P~~lg~~Gv~~iv~l~L 294 (326)
T 3vku_A 218 FEDVRNKAYEIIKLKGATFYGIATALARISKAILNDE--NAVLPLSVYMDGQYGLN-DIYIGTPAVINRNGIQNILEIPL 294 (326)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTC--CEEEEEEEEEEEGGGEE-EEEEEEEEEEETTEEEEECCCCC
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC--CceEEEEeeccCccCCC-ceEEEEEEEEcCCceEEEecCCC
Confidence 45689999999 9999999999999999999999996 89999999999999997 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
|++|+++|++|++.|++.++++
T Consensus 295 ~~~E~~~l~~sa~~L~~~~~~~ 316 (326)
T 3vku_A 295 TDHEEESMQKSASQLKKVLTDA 316 (326)
T ss_dssp CHHHHHHHHHHHHHHHCC----
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887
No 4
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=99.92 E-value=3.5e-25 Score=186.55 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=92.1
Q ss_pred hhhhhccchhh-c--ccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecC
Q psy17699 18 ISVVFSAGNDI-K--FMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQ 94 (149)
Q Consensus 18 ~~~V~~ag~eI-~--~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l 94 (149)
.+.|+++|++| + +||+|+||||.++++|+++|++|+ +.++|||++++|+||++ |+|+|+||++|++|+++++++
T Consensus 214 ~~~v~~~g~eii~~~~kgst~~a~a~a~~~~~~ail~~~--~~v~~~s~~~~g~yg~~-~~~~s~P~~~g~~Gv~~v~~l 290 (315)
T 3tl2_A 214 VERTRKGGGEIVGLLGNGSAYYAPAASLVEMTEAILKDQ--RRVLPAIAYLEGEYGYS-DLYLGVPVILGGNGIEKIIEL 290 (315)
T ss_dssp HHHHHTHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHTTC--CEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCC
T ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHcCC--CcEEEEEEeccCccCCC-ceEEEEEEEEeCCEEEEEcCC
Confidence 35588999999 8 999999999999999999999996 79999999999999996 999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
+||++|+++|++|++.||+.+++
T Consensus 291 ~L~~~E~~~l~~s~~~l~~~~~~ 313 (315)
T 3tl2_A 291 ELLADEKEALDRSVESVRNVMKV 313 (315)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998865
No 5
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=99.92 E-value=9e-25 Score=184.88 Aligned_cols=99 Identities=17% Similarity=0.249 Sum_probs=93.9
Q ss_pred hhhhccchhh-c--ccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCC
Q psy17699 19 SVVFSAGNDI-K--FMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQP 95 (149)
Q Consensus 19 ~~V~~ag~eI-~--~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~ 95 (149)
+.|+++|++| + +||+|+||||.++++|+++|++|+ +.++|||++++|+||++ |+|+|+||+||++|++++++++
T Consensus 217 ~~v~~~g~eIi~~~gkgsa~~~~a~a~~~~~~ail~~~--~~v~~~s~~~~g~yg~~-~v~~s~P~~~g~~Gv~~v~~l~ 293 (324)
T 3gvi_A 217 QRTRDGGAEIVGLLKTGSAFYAPAASAIQMAESYLKDK--KRVLPVAAQLSGQYGVK-DMYVGVPTVIGANGVERIIEID 293 (324)
T ss_dssp HHHHTHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHTTC--CEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCC
T ss_pred HHHHHhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCC--CcEEEEEEEecCccCCC-ceEEEEEEEEeCCEEEEecCCC
Confidence 4578999999 6 789999999999999999999996 79999999999999997 9999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
||++|+++|++|++.||+.++++..
T Consensus 294 L~~~E~~~l~~s~~~l~~~~~~~~~ 318 (324)
T 3gvi_A 294 LDKDEKAQFDKSVASVAGLCEACIG 318 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999863
No 6
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=99.92 E-value=4e-25 Score=184.69 Aligned_cols=97 Identities=25% Similarity=0.290 Sum_probs=92.2
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.+.|+++|++| ++||+|+||||.++++|+++|++|+ ++++|||++++|+||++ |+|+|+||++|++|++ +++++|
T Consensus 195 ~~~v~~~g~eii~~kG~t~~~~a~a~~~~~~ail~~~--~~v~~~s~~~~g~yg~~-~~~~s~P~~~g~~Gv~-v~~l~L 270 (294)
T 1oju_A 195 ENDVRFVAAEVIKRKGATIFGPAVAIYRMVKAVVEDT--GEIIPTSMILQGEYGIE-NVAVGVPAKLGKNGAE-VADIKL 270 (294)
T ss_dssp HHHHHTTHHHHHHHHSSCCHHHHHHHHHHHHHHHTTC--CCEEEEEEEEESGGGCE-EEEEEEEEEEETTEEE-ECCCCC
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHcCC--CeEEEEEecccccCCCC-ceEEEEEEEEeCCEEE-EecCCC
Confidence 45689999999 9999999999999999999999996 78999999999999998 9999999999999999 999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
|++|+++|++|++.|++.++++
T Consensus 271 ~~~E~~~l~~s~~~l~~~~~~~ 292 (294)
T 1oju_A 271 SDEEIEKLRNSAKILRERLEEL 292 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998763
No 7
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=99.91 E-value=8.5e-25 Score=184.36 Aligned_cols=101 Identities=19% Similarity=0.288 Sum_probs=94.7
Q ss_pred hhhhhccchhh-cccC-cceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCC
Q psy17699 18 ISVVFSAGNDI-KFML-NTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQP 95 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG-~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~ 95 (149)
.+.|+++|++| ++|| +|+||||.++++|+++|++|+ +.++|||++++|+||++ |+|+|+||++|++|++++++++
T Consensus 205 ~~~v~~~g~eIi~~kg~sa~~a~a~a~~~~~~ail~~~--~~v~~~s~~~~g~yg~~-~~~~s~P~~lg~~Gv~~v~~l~ 281 (314)
T 3nep_X 205 VERTKGAGGEIVDLMGTSAWYAPGAAAAEMTEAILKDN--KRILPCAAYCDGEYGLD-DLFIGVPVKLGAGGVEEVIEVD 281 (314)
T ss_dssp HHHHHTHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHTC--CEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCC
T ss_pred HHHHHHhHHHHHhccCCcHHHHHHHHHHHHHHHHHcCC--CeEEEEEEEeccccCCC-ceEEEEEEEEeCCEEEEecCCC
Confidence 35589999999 8888 899999999999999999996 89999999999999996 9999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFLTT 121 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~~~ 121 (149)
||++|+++|++|++.|++.++++.+.
T Consensus 282 L~~~E~~~l~~s~~~l~~~~~~~~~~ 307 (314)
T 3nep_X 282 LDADEKAQLKTSAGHVHSNLDDLQRL 307 (314)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987543
No 8
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Probab=99.91 E-value=8.7e-25 Score=185.75 Aligned_cols=97 Identities=25% Similarity=0.321 Sum_probs=91.6
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.+.|+++|++| ++||+|+||||.++++|+++|++|+ +.++|+|++++|+||+++|+|+|+||+||++|++++++++|
T Consensus 230 ~~~v~~~g~eIi~~kg~t~~a~a~a~a~~~~ail~d~--~~~~~vs~~~~g~ygi~~~v~~s~P~~lg~~Gv~~iv~l~L 307 (331)
T 4aj2_A 230 HKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNL--RRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKVTL 307 (331)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTC--CEEEEEEEECTTGGGCCSCCEEEEEEEEETTEEEEEECCCC
T ss_pred HHHHHHhHHHHhhcCCCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCCccCCcCceEEEEEEEEcCCeeEEEccCCC
Confidence 34589999999 9999999999999999999999996 89999999999999986699999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q psy17699 97 TQEEIEKLKKSAQAISQDYM 116 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~ 116 (149)
|++|+++|++|++.|++.++
T Consensus 308 ~~~E~~~l~~s~~~l~~~~~ 327 (331)
T 4aj2_A 308 TPDEEARLKKSADTLWGIQK 327 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998554
No 9
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=99.91 E-value=2e-24 Score=182.12 Aligned_cols=99 Identities=23% Similarity=0.244 Sum_probs=93.2
Q ss_pred hhhhccchhh-c--ccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeecc-CcCCCccceEEEeeEEEcCCceeEEecC
Q psy17699 19 SVVFSAGNDI-K--FMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSE-GHHGIEEEVFLSLPCVMADNGVTHIVNQ 94 (149)
Q Consensus 19 ~~V~~ag~eI-~--~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~-G~YGi~~dV~lSvP~vIGr~GVe~vl~l 94 (149)
+.|+++|++| + +||+|+||||.++++|+++|++|+ +.++|||++++ |+||+++|+|+|+||+||++|++++ ++
T Consensus 215 ~~v~~~g~eIi~~~g~gsa~~~~a~a~~~~~~ail~~~--~~v~~~s~~~~~g~ygi~~~v~~s~P~~~g~~Gv~~v-~l 291 (321)
T 3p7m_A 215 SRTRSGGGEIVALLKTGSAYYAPAAAGIQMAESFLKDK--KMILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPI-EV 291 (321)
T ss_dssp HHHHTHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHTTC--CEEEEEEEEECTTGGGCSSCEEEEEEEEEETTEEEEC-CC
T ss_pred HHHHhhhHHHHHhcCCCChHHHHHHHHHHHHHHHHcCC--CcEEEEEEEccCcccCCCCCeEEEEEEEEcCCEEEEe-CC
Confidence 4578899999 6 789999999999999999999996 79999999999 9999977999999999999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
+||++|+++|++|++.||+.++++..
T Consensus 292 ~L~~~E~~~l~~s~~~l~~~~~~~~~ 317 (321)
T 3p7m_A 292 EISDKEREQLQVSINAIKDLNKAAAE 317 (321)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998753
No 10
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=99.89 E-value=2.6e-24 Score=183.37 Aligned_cols=98 Identities=27% Similarity=0.314 Sum_probs=93.0
Q ss_pred hhhhhccchhh-cccCcceeeHHH-----------------HHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEe
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRG-----------------GLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSL 79 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~-----------------aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSv 79 (149)
.+.|+++|++| ++||+|+||||. ++++|+++|++|+ ++++|||++++|+||+++|+|+|+
T Consensus 211 ~~~v~~~g~eii~~kg~t~~a~a~~~~~~~~~~~~~~~~~~a~~~~~~ail~~~--~~v~~~s~~~~g~yg~~~~v~~s~ 288 (330)
T 3ldh_A 211 HKDVVDSAYEVIKLKGYTSWAIGLVVSNPVDVLTYVAWKGCSVADLAQTIMKDL--CRVHPVSTMVKDFYGIKDNVFLSL 288 (330)
T ss_dssp EHHHHHCCCTTSTTCHHHHHHHHHTTHHHHTTSSSCSCTHHHHHHHHHHHHHTC--CEEECCBCCCSSSSSCCSCCCCBC
T ss_pred HHHHHHHHHHHHHccCCcceeeeeeccCccchhhhhhhHHHHHHHHHHHHHcCC--CceEEEEeecCCccCCCCceEEEE
Confidence 45689999999 999999999999 9999999999996 899999999999999977999999
Q ss_pred eEEEcCCceeE--EecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy17699 80 PCVMADNGVTH--IVNQPLTQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 80 P~vIGr~GVe~--vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
||+|| +|+++ +++++||++|+++|++|++.|++.++++
T Consensus 289 P~~lg-~Gv~~~~iv~~~L~~~E~~~l~~s~~~l~~~~~~~ 328 (330)
T 3ldh_A 289 PCVLN-NGISHCNIVKMKLKPDEEQQLQKSATTLWDIQKDL 328 (330)
T ss_dssp CEEEB-TTBCTTCCCCCCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEC-CcEEEcceecCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 99999 99999 9999999999999999999999998763
No 11
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Probab=99.88 E-value=1.2e-22 Score=168.71 Aligned_cols=98 Identities=24% Similarity=0.319 Sum_probs=92.6
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.+.++++|++| ++||+|+|++|.++++|+++|++|+ +.++|+|++++|+||++ |+|+|+||+||++|++++++++|
T Consensus 204 ~~~v~~~g~eii~~kg~~~~~~a~a~~~~~~ai~~~~--~~~~~~~~~~~g~~g~~-~~~~~~P~~ig~~Gv~~i~~~~l 280 (303)
T 1o6z_A 204 LGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDT--GEVLPASVKLEGEFGHE-DTAFGVPVSLGSNGVEEIVEWDL 280 (303)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHHHHTTC--CCEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCCC
T ss_pred HHHHHHHhHHHHhcCCChHHHHHHHHHHHHHHHHhCC--CCEEEEEEecCCccCCc-ceEEEEEEEEeCCeeEEecCCCC
Confidence 34577899999 9999999999999999999999997 78999999999999995 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
+++|+++|++|++.||+.++++
T Consensus 281 ~~~e~~~l~~s~~~l~~~~~~~ 302 (303)
T 1o6z_A 281 DDYEQDLMADAAEKLSDQYDKI 302 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998864
No 12
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=99.88 E-value=7.2e-23 Score=170.88 Aligned_cols=99 Identities=20% Similarity=0.251 Sum_probs=93.5
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.+.++++|++| ++||+|+|++|.++++|+++|++|+ +.++|+|++++|+||++ |+|+|+||+||++|++++++++|
T Consensus 216 ~~~v~~~g~eii~~kg~~~~~~a~a~~~~~~ai~~~~--~~~~~~~~~~~g~yg~~-~~~~~vP~~ig~~Gv~~i~~~~l 292 (316)
T 1ldn_A 216 FVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNE--NAILTVSAYLDGLYGER-DVYIGVPAVINRNGIREVIEIEL 292 (316)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTC--CEEEEEEEEEESTTSCE-EEEEEEEEEEETTEEEEECCCCC
T ss_pred HHHHHHhHHHHHhccCCcHHHHHHHHHHHHHHHHhCC--CcEEEEEEEecCccCCc-ceEEEEEEEEeCCeeEEEccCCC
Confidence 45678899999 9999999999999999999999996 79999999999999994 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
+++|+++|++|++.|++.+++++
T Consensus 293 ~~~e~~~l~~s~~~l~~~~~~~~ 315 (316)
T 1ldn_A 293 NDDEKNRFHHSAATLKSVLARAF 315 (316)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998763
No 13
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Probab=99.88 E-value=1.2e-22 Score=170.48 Aligned_cols=101 Identities=21% Similarity=0.303 Sum_probs=95.2
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.+.++++|++| ++||+|+|++|.++++|+++|++|+ +.++|+|++++|+||++ |+|+|+||+||++|++++++++|
T Consensus 213 ~~~v~~~g~eii~~kg~t~~~~a~a~~~~~~ai~~~~--~~~~~vs~~~~G~yg~~-~~~~~vP~~ig~~Gv~~i~~~~L 289 (318)
T 1ez4_A 213 EDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDE--NAVLPVGAYMDGQYGLN-DIYIGTPAIIGGTGLKQIIESPL 289 (318)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTC--CEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCCC
T ss_pred HHHHHHhhhhheeCCCcchHHHHHHHHHHHHHHHhCC--CcEEEEEEeecCccCCC-ceEEEEEEEEeCCeeEEEcCCCC
Confidence 45578899999 9999999999999999999999996 79999999999999998 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYFLTT 121 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~~~~ 121 (149)
+++|+++|++|++.|++.++++.+-
T Consensus 290 ~~~e~~~l~~s~~~l~~~~~~~~~~ 314 (318)
T 1ez4_A 290 SADELKKMQDSAATLKKVLNDGLAE 314 (318)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987543
No 14
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Probab=99.88 E-value=1.6e-22 Score=167.97 Aligned_cols=99 Identities=21% Similarity=0.321 Sum_probs=92.3
Q ss_pred hhhhccchhh-c--ccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCC
Q psy17699 19 SVVFSAGNDI-K--FMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQP 95 (149)
Q Consensus 19 ~~V~~ag~eI-~--~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~ 95 (149)
+.++++|++| + +||+|+|++|.++++|+++|++|+ +.++|||++++|+||++ |+|+|+||+||++|++++++++
T Consensus 206 ~~v~~~g~~ii~~~~kgs~~~~~a~a~~~~~~ai~~~~--~~~~~~~~~~~g~~g~~-~~~~~~P~~ig~~Gv~~i~~~~ 282 (310)
T 1guz_A 206 ERTRNGGAEIVEHLKQGSAFYAPASSVVEMVESIVLDR--KRVLPCAVGLEGQYGID-KTFVGVPVKLGRNGVEQIYEIN 282 (310)
T ss_dssp HHHHTHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHTTC--CEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCC
T ss_pred HHHHHhHHHHHhhcCCCCcHHHHHHHHHHHHHHHHcCC--CcEEEEEEeecCccCCc-ceEEEEEEEEeCCeeEEEcCCC
Confidence 4567899999 8 899999999999999999999997 79999999999999994 9999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
|+++|+++|++|++.|++.++++..
T Consensus 283 l~~~e~~~l~~s~~~l~~~~~~~~~ 307 (310)
T 1guz_A 283 LDQADLDLLQKSAKIVDENCKMLES 307 (310)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999987654
No 15
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Probab=99.87 E-value=1.8e-22 Score=168.73 Aligned_cols=98 Identities=26% Similarity=0.219 Sum_probs=93.0
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.+.++++|++| ++||+|+||+|.++++|+++|++|+ +.++|+|++++|+||++ |+|+|+||+||++|++++++++|
T Consensus 210 ~~~v~~~g~eii~~kg~t~~~~a~a~~~~~~ai~~~~--~~~~~vs~~~~G~yg~~-~~~~~vP~~ig~~Gv~~i~~~~L 286 (310)
T 2xxj_A 210 DEGVRRAAYRIIEGKGATYYGIGAGLARLVRAILTDE--KGVYTVSAFTPEVAGVL-EVSLSLPRILGAGGVAGTVYPSL 286 (310)
T ss_dssp HHHHHTHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTC--CEEEEEEEEEEEETTEE-EEEEEEEEEEETTEEEEECCCCC
T ss_pred HHHHHHhhHHHHhccCCcHHHHHHHHHHHHHHHHcCC--CCEEEEEEEEcCccCCc-cEEEEEEEEEeCCeeEEEcCCCC
Confidence 35578899999 9999999999999999999999996 79999999999999994 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
+++|+++|++|++.||+.++++
T Consensus 287 ~~~e~~~l~~s~~~l~~~~~~~ 308 (310)
T 2xxj_A 287 SPEERAALRRSAEILKEAAFAL 308 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999876
No 16
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=99.87 E-value=2.1e-22 Score=169.80 Aligned_cols=100 Identities=25% Similarity=0.320 Sum_probs=94.3
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.+.++++|++| ++||+|+|++|.++++|+++|++|+ +.++|+|++++|+||++ |+|+|+||+||++|++++++++|
T Consensus 218 ~~~v~~~g~eii~~kG~t~~~~a~aa~~~~~ai~~~~--~~~~~vsv~~~G~yg~~-~~~~svP~~ig~~Gv~~i~~~~L 294 (326)
T 2zqz_A 218 FEDVRDAAYEIIKLKGATFYGIATALARISKAILNDE--NAVLPLSVYMDGQYGLN-DIYIGTPAVINRNGIQNILEIPL 294 (326)
T ss_dssp HHHHHTHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTC--CEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCCC
T ss_pred HHHHHHhHHHHHHcCCCcHHHHHHHHHHHHHHHHhCC--CcEEEEEEeccCccCCC-ceEEEEEEEEcCCeeEEEecCCC
Confidence 35578899999 9999999999999999999999996 79999999999999998 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
+++|+++|++|++.|++.++++.+
T Consensus 295 ~~~e~~~l~~s~~~l~~~~~~~~~ 318 (326)
T 2zqz_A 295 TDHEEESMQKSASQLKKVLTDAFA 318 (326)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998754
No 17
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=99.87 E-value=3.1e-22 Score=166.58 Aligned_cols=98 Identities=19% Similarity=0.317 Sum_probs=92.9
Q ss_pred hhhhccchhh-c--ccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCC
Q psy17699 19 SVVFSAGNDI-K--FMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQP 95 (149)
Q Consensus 19 ~~V~~ag~eI-~--~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~ 95 (149)
+.++++|++| + +||+|+|++|.++++|+++|++|+ +.++|||++++|+||++ |+|+|+||+||++|++++++++
T Consensus 207 ~~v~~~g~eii~~~~kgs~~~~~a~a~~~~~~ai~~~~--~~~~~~~~~~~g~~g~~-~~~~~vP~~ig~~Gv~~i~~~~ 283 (309)
T 1ur5_A 207 ERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAVLKDK--KRVMPVAAYLTGQYGLN-DIYFGVPVILGAGGVEKILELP 283 (309)
T ss_dssp HHHHTHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHTTC--CEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCC
T ss_pred HHHHhhhHHhhhhccCCCcHHHHHHHHHHHHHHHHcCC--CcEEEEEEEecCccCCc-ceEEEEEEEEeCCceEEecCCC
Confidence 4467899999 8 899999999999999999999997 79999999999999995 9999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
|+++|+++|++|++.|++.++++.
T Consensus 284 l~~~e~~~l~~s~~~l~~~~~~~~ 307 (309)
T 1ur5_A 284 LNEEEMALLNASAKAVRATLDTLK 307 (309)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999874
No 18
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Probab=99.87 E-value=3.5e-22 Score=166.29 Aligned_cols=98 Identities=19% Similarity=0.295 Sum_probs=87.2
Q ss_pred hhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcC-CCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 19 SVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHH-GIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 19 ~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~Y-Gi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
+.++++|++| ++||+|+|++|.++++|+++|++|+ +.++|+|++++|+| |++ |+|+|+||+||++|++++++++|
T Consensus 212 ~~v~~~g~eii~~kgs~~~~~a~a~~~~~~ai~~~~--~~~~~~~~~~~g~~~g~~-~~~~~~P~~ig~~Gv~~i~~~~l 288 (313)
T 1hye_A 212 EDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNE--KRLLTLSAYVDGEFDGIR-DVCIGVPVKIGRDGIEEVVSIEL 288 (313)
T ss_dssp HHHHHHTTSCCC------CCHHHHHHHHHHHHHTTC--CEEEEEEEEEESSSSSCE-EEEEEEEEEEETTEEEEECCCCC
T ss_pred HHHHhccceeecCCCCcHHHHHHHHHHHHHHHHcCC--CeEEEEEEeecceecCcc-ceEEEEEEEEeCCeeEEecCCCC
Confidence 4567899999 9999999999999999999999996 79999999999999 995 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
+++|+++|++|++.||+.++++.
T Consensus 289 ~~~e~~~l~~s~~~l~~~~~~~~ 311 (313)
T 1hye_A 289 DKDEIIAFRKSAEIIKKYCEEVK 311 (313)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999875
No 19
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Probab=99.87 E-value=2e-22 Score=168.60 Aligned_cols=99 Identities=19% Similarity=0.232 Sum_probs=92.0
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecC-C
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQ-P 95 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l-~ 95 (149)
.+.++++|++| ++||+|+|++|.++++|+++|++|+ +.++|||++++|+||+++|+|+|+||+||++|+++++++ +
T Consensus 201 ~~~~~~~g~eii~~kGst~~~~a~a~~~i~~ai~~~~--~~~~~vs~~~~g~yg~~~~~~~~vP~~ig~~Gv~~i~~~~~ 278 (303)
T 2i6t_A 201 QVQLSNRAMELLRVKGQRSWSVGLSVADMVDSIVNNK--KKVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVIKTTL 278 (303)
T ss_dssp HHHHHHHHHTTSSSCCCCHHHHHHHHHHHHHHHHTTC--CEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCBCC
T ss_pred HHHHHHHHHHHHHccCchHHhHHHHHHHHHHHHHcCC--CcEEEEEEEeCCccCCCCCeEEEEEEEEECCccEEecCCCC
Confidence 45578899999 9999999999999999999999997 799999999999999966999999999999999999999 8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
|+++|+++|++|++.||+.++++
T Consensus 279 l~~~e~~~l~~s~~~l~~~~~~~ 301 (303)
T 2i6t_A 279 KEDTVTEKLQSSASSIHSLQQQL 301 (303)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998864
No 20
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}
Probab=99.87 E-value=1.6e-22 Score=168.98 Aligned_cols=99 Identities=22% Similarity=0.323 Sum_probs=93.4
Q ss_pred hhhhccchhh-cccC-cceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 19 SVVFSAGNDI-KFML-NTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 19 ~~V~~ag~eI-~~KG-~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
+.++++|++| ++|| +|+|++|.++++|+++|++|+ +.++|||++++|+||++ |+|+|+||+||++|++++++++|
T Consensus 204 ~~v~~~g~eii~~kg~s~~~~~a~a~~~~~~ai~~~~--~~v~~vs~~~~G~yg~~-~~~~~vP~~ig~~Gv~~i~~~~L 280 (308)
T 2d4a_B 204 SETVNAGAKITELRGYSSNYGPAAGLVLTVEAIKRDS--KRIYPYSLYLQGEYGYN-DIVAEVPAVIGKSGIERIIELPL 280 (308)
T ss_dssp HHHHTHHHHHHHHHSSCCCHHHHHHHHHHHHHHHTTC--CEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCCC
T ss_pred HHHHHhhHhhhhCCCCccHHHHHHHHHHHHHHHHhCC--CcEEEEEEEEcCccCCC-ceEEEEEEEEcCCceEEecCCCC
Confidence 4567899999 9999 999999999999999999997 79999999999999995 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
+++|+++|++|++.|++.++++.+
T Consensus 281 ~~~e~~~l~~s~~~l~~~~~~~~~ 304 (308)
T 2d4a_B 281 TEDEKRKFDEAVQAVKKLVETLPP 304 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 21
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=99.87 E-value=2e-22 Score=168.56 Aligned_cols=99 Identities=23% Similarity=0.263 Sum_probs=92.9
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.+.++++|++| ++||+|+|++|.++++|+++|++|+ +.++|+|++++|+||++ |+|+|+||+||++|++++++++|
T Consensus 215 ~~~v~~~g~eii~~kg~~~~~~a~a~~~~~~ai~~~~--~~~~~~~~~~~g~~g~~-~~~~~vP~~ig~~Gv~~i~~~~l 291 (317)
T 3d0o_A 215 FVQTRDAAYDIIQAKGATYYGVAMGLARITEAIFRNE--DAVLTVSALLEGEYEEE-DVYIGVPAVINRNGIRNVVEIPL 291 (317)
T ss_dssp HHHHHTHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTC--CEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCCC
T ss_pred HHHHHhhhhEEEeCCCCchHhHHHHHHHHHHHHHcCC--CcEEEEEEeecCccCCC-ceEEEEEEEEeCCeeEEEecCCC
Confidence 45678899999 9999999999999999999999996 79999999999999998 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
+++|+++|++|++.|++.++++.
T Consensus 292 ~~~e~~~l~~s~~~l~~~~~~~~ 314 (317)
T 3d0o_A 292 NDEEQSKFAHSAKTLKDIMAEAE 314 (317)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 22
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1
Probab=99.87 E-value=4.4e-22 Score=165.85 Aligned_cols=99 Identities=18% Similarity=0.186 Sum_probs=94.1
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.+.++++|++| ++||+|+||+|.++++|+++|++|+ +.++|+|++++|+||+ +|+|+|+||+||++|++++++++|
T Consensus 209 ~~~v~~~g~eii~~kg~~~~~~a~a~~~~~~ai~~~~--~~~~~~~~~~~g~~g~-~~~~~~vP~~vg~~Gv~~i~~~~L 285 (319)
T 1a5z_A 209 AEKTKRAAYEIIERKGATHYAIALAVADIVESIFFDE--KRVLTLSVYLEDYLGV-KDLCISVPVTLGKHGVERILELNL 285 (319)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTC--CEEEEEEEEESSBTTB-CSEEEEEEEEEETTEEEEECCCCC
T ss_pred HHHHHHhhhhhhccCCchHHHHHHHHHHHHHHHHhCC--CCEEEEEEEecCccCc-cceEEEEEEEEeCCceEEEecCCC
Confidence 45688899999 9999999999999999999999996 7999999999999999 499999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
+++|+++|++|++.|++.++++.
T Consensus 286 ~~~e~~~l~~s~~~l~~~~~~~~ 308 (319)
T 1a5z_A 286 NEEELEAFRKSASILKNAINEIT 308 (319)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999874
No 23
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=99.87 E-value=1.9e-22 Score=168.97 Aligned_cols=102 Identities=26% Similarity=0.257 Sum_probs=95.0
Q ss_pred ccchhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEec
Q psy17699 15 SHKISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVN 93 (149)
Q Consensus 15 ~~~~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~ 93 (149)
..-.+.++++|++| ++||+|+|++|.++++|+++|++|+ +.++|+|++++|+||+ +|+|+|+||+||++|++++++
T Consensus 214 ~~~~~~v~~~g~eii~~kg~t~~~~a~a~~~~~~ai~~~~--~~~~~~~~~~~G~yg~-~~~~~~vP~~ig~~Gv~~i~~ 290 (318)
T 1y6j_A 214 KKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETLLKNQ--NTIRTVGTVINGMYGI-EDVAISLPSIVNSEGVQEVLQ 290 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHTC--CCEECCEEEECSBTTB-CSEEEECCEEEETTEEEECCC
T ss_pred HHHHHHHHHhhHhHhhCCCccHHHHHHHHHHHHHHHHcCC--CcEEEEEEeecCccCC-cceEEEEEEEEcCCeeEEEec
Confidence 34456678999999 9999999999999999999999996 7899999999999999 499999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
++|+++|+++|++|++.|++.++++.
T Consensus 291 ~~L~~~e~~~l~~s~~~l~~~~~~~~ 316 (318)
T 1y6j_A 291 FNLTPEEEEALRFSAEQVKKVLNEVK 316 (318)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988753
No 24
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=99.86 E-value=6e-22 Score=166.35 Aligned_cols=99 Identities=17% Similarity=0.237 Sum_probs=93.0
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.+.++++|++| +.||+|+||+|.++++|+++|++|+ +.++|||++++|+||.+ |+|+|+||+||++|++++++++|
T Consensus 218 ~~~v~~~g~eii~~kgs~~~~~a~a~~~~~~ai~~~~--~~v~~~s~~~~g~~g~~-~~~~~vP~~ig~~Gv~~i~~~~l 294 (322)
T 1t2d_A 218 FDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDL--KKVLICSTLLEGQYGHS-DIFGGTPVVLGANGVEQVIELQL 294 (322)
T ss_dssp HHHHHTHHHHHHHHTSSCCHHHHHHHHHHHHHHHTTC--CEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCCC
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhCC--CCEEEEEEEecCccCCC-ceEEEEEEEEeCCeeEEeCCCCC
Confidence 45688999999 9999999999999999999999997 79999999999999995 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
+++|+++|++|++.|++.++...
T Consensus 295 ~~~e~~~l~~s~~~L~~~~~~~~ 317 (322)
T 1t2d_A 295 NSEEKAKFDEAIAETKRMKALAH 317 (322)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999987654
No 25
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Probab=99.86 E-value=8e-22 Score=167.17 Aligned_cols=104 Identities=15% Similarity=0.233 Sum_probs=94.3
Q ss_pred hhhhhccchhh-cc-cCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccC-cCCCccceEEEeeEEEcCCceeEEec-
Q psy17699 18 ISVVFSAGNDI-KF-MLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEG-HHGIEEEVFLSLPCVMADNGVTHIVN- 93 (149)
Q Consensus 18 ~~~V~~ag~eI-~~-KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G-~YGi~~dV~lSvP~vIGr~GVe~vl~- 93 (149)
.+.|+++|++| ++ |+++.|++|.+++++++++++|+.+++++|||++++| +||+++|+|+|+||+| ++|++++++
T Consensus 223 ~~~v~~~g~eIi~~k~~ssa~~~a~~~~~~~~~il~~~~~~~v~~~s~~~~G~~YGi~~~v~~s~P~~~-~~Gv~~iv~~ 301 (333)
T 5mdh_A 223 ITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTI-KDKTWKIVEG 301 (333)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCSSSCCSSCEEEEEEEE-ETTEEEECCC
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCcccCCCCCeEEEEEEEE-cCCeEEEcCC
Confidence 36688999999 74 5579999999999999999999755789999999999 9999559999999999 999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
++||++|+++|++|++.|++.++++++-+
T Consensus 302 l~L~~~E~~~l~~sa~~L~~~~~~~~~~l 330 (333)
T 5mdh_A 302 LPINDFSREKMDLTAKELAEEKETAFEFL 330 (333)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887643
No 26
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*
Probab=99.86 E-value=1.2e-21 Score=165.09 Aligned_cols=98 Identities=16% Similarity=0.071 Sum_probs=89.5
Q ss_pred hhhhhccchhh-ccc---CcceeeHHHHHHHHHHhh---hcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeE
Q psy17699 18 ISVVFSAGNDI-KFM---LNTIEGPRGGLTHNIQVP---LLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTH 90 (149)
Q Consensus 18 ~~~V~~ag~eI-~~K---G~T~ygiA~aia~IveaI---L~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~ 90 (149)
.+.|+++|++| ++| |+|+|+||.|+++++++| ++|+ +.++||| +++|+ |.. ++|+|+||++|++|+++
T Consensus 203 ~~~v~~~g~eIi~~k~g~gst~~s~a~a~~~~~~ai~~~l~~~--~~v~~~s-~~~g~-g~~-~v~~s~P~~~g~~Gv~~ 277 (312)
T 3hhp_A 203 TKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGE--QGVVECA-YVEGD-GQY-ARFFSQPLLLGKNGVEE 277 (312)
T ss_dssp HHHHHTHHHHHHHHTTTSCCCCHHHHHHHHHHHHHHHHHHTTC--SSCEEEE-EEECC-CSS-CSEEEEEEEEETTEEEE
T ss_pred HHHHHhhhHHHHhhccCCCCchhHHHHHHHHHHHHHHHHcCCC--CceEEEE-EecCC-CCc-ceEEEeEEEEeCCEEEE
Confidence 45689999999 877 999999999999999999 7885 7899998 99976 554 89999999999999999
Q ss_pred EecC-CCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 91 IVNQ-PLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 91 vl~l-~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
++++ +||++|+++|++|++.|++.+++.++
T Consensus 278 v~~~~~L~~~E~~~l~~s~~~l~~~i~~g~~ 308 (312)
T 3hhp_A 278 RKSIGTLSAFEQNALEGMLDTLKKDIALGEE 308 (312)
T ss_dssp ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 99999999999999999999998765
No 27
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=99.86 E-value=1.6e-21 Score=164.07 Aligned_cols=99 Identities=17% Similarity=0.222 Sum_probs=93.4
Q ss_pred hhhhccchhh-c--ccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCC
Q psy17699 19 SVVFSAGNDI-K--FMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQP 95 (149)
Q Consensus 19 ~~V~~ag~eI-~--~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~ 95 (149)
+.++.+|++| + +||+|+||||.++++|+++|++|+ +.++|||++++|+||++ |+|+|+||+||++|++++++++
T Consensus 225 ~~~~~~g~eii~~~~kgst~~~~a~a~~~ii~ai~~~~--~~~~~~~v~~~G~~g~~-~~~~~vP~~vg~~Gv~~i~~~~ 301 (331)
T 1pzg_A 225 EHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDE--KRVIPCSVYCNGEYGLK-DMFIGLPAVIGGAGIERVIELE 301 (331)
T ss_dssp HHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHTTC--CEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCC
T ss_pred HHHHhccHHHHHhhcCCCccchHHHHHHHHHHHHHhCC--CcEEEEEEEecCccCCC-ceEEEEEEEEeCCeeEEecCCC
Confidence 3578899999 8 899999999999999999999997 79999999999999995 9999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
|+++|+++|++|++.|++.++++..
T Consensus 302 L~~~e~~~l~~s~~~l~~~~~~~~~ 326 (331)
T 1pzg_A 302 LNEEEKKQFQKSVDDVMALNKAVAA 326 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998743
No 28
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}
Probab=99.86 E-value=4.1e-22 Score=170.02 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=94.1
Q ss_pred hhhhccchhh-cccCcc-eeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCC-
Q psy17699 19 SVVFSAGNDI-KFMLNT-IEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQP- 95 (149)
Q Consensus 19 ~~V~~ag~eI-~~KG~T-~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~- 95 (149)
+.|+++|++| ++||+| +|++|.++++|+++|++|+ ++++|+|++++|+| .+ |+|+|+||+||++||+++ +++
T Consensus 219 ~~v~~~g~eIi~~kg~ss~~s~A~a~~~~~~ail~d~--~~v~~~s~~~~g~~-~~-~v~~s~P~~lg~~Gv~~~-~~~~ 293 (343)
T 3fi9_A 219 QRVVKGGANIIKLRGRSSFQSPSYVSIEMIRAAMGGE--AFRWPAGCYVNVPG-FE-HIMMAMETTITKDGVKHS-DINQ 293 (343)
T ss_dssp HHHHTHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSS--CCCSCEEEEEEETT-EE-EEEEEESEEEETTEEEEC-CGGG
T ss_pred HHHHhhhHHHHHccCCCcHHhHHHHHHHHHHHHHhCC--CceEEEEEEEeCCC-cC-ceEEEeEEEEeCCceEEE-ecCC
Confidence 4589999999 999976 5699999999999999997 78999999999864 54 999999999999999987 555
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHh-chhhhhhhccce
Q psy17699 96 -LTQEEIEKLKKSAQAISQDYMYFLT-TYIPKIFQLGQV 132 (149)
Q Consensus 96 -Ls~eEqe~L~~Sa~~Ik~~i~~~~~-~~~~~~~~~~~~ 132 (149)
|+++|+++|++|++.||+.++.+.. .++|.|-....+
T Consensus 294 ll~~~E~~~l~~Sa~~l~~~~~~~~~lg~~~~~~~~~~~ 332 (343)
T 3fi9_A 294 LGNEAERAALKESYSHLAKLRDEVIAMGIIPAIADWKTV 332 (343)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHTTSSCCGGGC---
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhcC
Confidence 8999999999999999999998876 488988665544
No 29
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=99.86 E-value=2e-21 Score=163.25 Aligned_cols=98 Identities=18% Similarity=0.225 Sum_probs=93.0
Q ss_pred hhhhccchhh-c--ccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCC
Q psy17699 19 SVVFSAGNDI-K--FMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQP 95 (149)
Q Consensus 19 ~~V~~ag~eI-~--~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~ 95 (149)
+.++++|++| + +||+|+||+|.++++|+++|++|+ +.++|+|++.+|+||++ |+|+|+||+||++|++++++++
T Consensus 224 ~~v~~~g~eii~~~~~gs~~~~~a~a~~~i~~ai~~~~--~~v~~~~v~~~G~~g~~-~~~~~vP~~ig~~Gv~~i~~~~ 300 (328)
T 2hjr_A 224 KKTAFGGGEIVELLKTGSAFYAPAASAVAMAQAYLKDS--KSVLVCSTYLTGQYNVN-NLFVGVPVVIGKNGIEDVVIVN 300 (328)
T ss_dssp HHHHTHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHTTC--CEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCC
T ss_pred HHHHhhHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCC--CcEEEEEEeecCccCCC-ceEEEEEEEEeCCeeEEecCCC
Confidence 4578899999 7 799999999999999999999996 79999999999999995 9999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
|+++|+++|++|++.|++.++++.
T Consensus 301 L~~~e~~~l~~s~~~l~~~~~~~~ 324 (328)
T 2hjr_A 301 LSDDEKSLFSKSVESIQNLVQDLK 324 (328)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875
No 30
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=99.85 E-value=1.4e-21 Score=162.17 Aligned_cols=94 Identities=24% Similarity=0.176 Sum_probs=75.4
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.+.++++|++| ++||+|+|++|.++++|+++|++|+ +.++|+|++++| || +|+|+||+||++|++++++++|
T Consensus 208 ~~~v~~~~~eii~~kg~t~~~~a~a~~~~~~ai~~~~--~~~~~~~~~~~g-yg----~~~~~P~~ig~~Gv~~i~~~~l 280 (304)
T 2v6b_A 208 DEGTRNAAASIIEGKRATYYGIGAALARITEAVLRDR--RAVLTVSAPTPE-YG----VSLSLPRVVGRQGVLSTLHPKL 280 (304)
T ss_dssp HHHHTC-----------CCHHHHHHHHHHHHHHHTTC--CEEEEEEEEETT-TT----EEEEEEEEEETTEEEEECCCCC
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhCC--CcEEEEEEEECC-cC----cEEEEEEEEeCCeeEEEcCCCC
Confidence 35688999999 9999999999999999999999996 899999999999 96 8999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
+++|+++|++|++.||+.++++
T Consensus 281 ~~~e~~~l~~s~~~l~~~~~~~ 302 (304)
T 2v6b_A 281 TGDEQQKLEQSAGVLRGFKQQL 302 (304)
T ss_dssp CHHHHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998865
No 31
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*
Probab=99.85 E-value=2.1e-21 Score=160.98 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=91.6
Q ss_pred hhhhccchhh-cccCcceee-HHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEec-CC
Q psy17699 19 SVVFSAGNDI-KFMLNTIEG-PRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVN-QP 95 (149)
Q Consensus 19 ~~V~~ag~eI-~~KG~T~yg-iA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~-l~ 95 (149)
+.++++|++| ++||+++|+ +|.++++|+++|++|..++.++|||++++|+||+++|+|+|+||+| ++|++++++ ++
T Consensus 220 ~~v~~~g~~ii~~kg~~~~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~g~yg~~~~~~~~~P~~i-~~G~~~i~~~~~ 298 (327)
T 1y7t_A 220 PTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTA-KDGAYRVVEGLE 298 (327)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTBCCTTCCEEEEEECSSGGGCCTTSEEEEEEEE-ETTEEEECCCCC
T ss_pred HHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHcCCCCCeEEEEEEEecCccCCCCCeEEEEEEEE-cCCeEEecCCCC
Confidence 4588999999 999988777 5679999999999993126799999999999999669999999999 999999998 99
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFLTT 121 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~~~ 121 (149)
|+++|+++|++|++.|++.++.+++.
T Consensus 299 l~~~e~~~l~~s~~~l~~~~~~~~~~ 324 (327)
T 1y7t_A 299 INEFARKRMEITAQELLDEMEQVKAL 324 (327)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988653
No 32
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=99.84 E-value=1.6e-20 Score=155.63 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=92.1
Q ss_pred hhhccchhh-c--ccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699 20 VVFSAGNDI-K--FMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL 96 (149)
Q Consensus 20 ~V~~ag~eI-~--~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L 96 (149)
.++.+++++ + +||+|+|++|.++++++++|++|+ +.++|+|++.+|+||++ |+|+|+||+||++|++++++++|
T Consensus 215 ~~~~~~~ei~~~~g~g~~~~~~a~a~~~~~~ai~~~~--~~~~~~~~~~~G~~g~~-~~~~~~P~~i~~~Gv~~i~~~~l 291 (317)
T 2ewd_A 215 HTRIAWKEVADNLKTGTAYFAPAAAAVKMAEAYLKDK--KAVVPCSAFCSNHYGVK-GIYMGVPTIIGKNGVEDILELDL 291 (317)
T ss_dssp HHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHTTC--CEEEEEEEEESSSTTCS-SEEEEEEEEEETTEEEEECCCCC
T ss_pred HHHhhHHHHHHhhcCCchHHHHHHHHHHHHHHHHcCC--CeEEEEEEEecCccCCc-ceEEEeEEEEcCCeeEEecCCCC
Confidence 356789999 6 799999999999999999999996 79999999999999995 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
+++|+++|++|++.|++.++++.+
T Consensus 292 ~~~e~~~l~~s~~~l~~~~~~~~~ 315 (317)
T 2ewd_A 292 TPLEQKLLGESINEVNTISKVLDN 315 (317)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998865
No 33
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*
Probab=99.84 E-value=6.2e-21 Score=165.18 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=88.9
Q ss_pred hhhhhccchhh-cccCcceeeHHHHHHHHHHhhh-----cCCCCCeEEEeeeeccC-cCCCccceEEEeeEEEcCCceeE
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPL-----LDFDSNVESCEKSKSEG-HHGIEEEVFLSLPCVMADNGVTH 90 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL-----~D~de~~IlpvS~~l~G-~YGi~~dV~lSvP~vIGr~GVe~ 90 (149)
.+.|+++|++| ++||+|+| |+++++|+++|+ .|+ ++++|||++++| +||+++|+|+|+||+||++|+++
T Consensus 248 ~~~v~~~g~eII~~kG~ts~--a~aa~~i~~~i~~~l~g~d~--~~v~~vs~~~~G~~YGi~~dv~~s~P~vlg~~Gv~~ 323 (375)
T 7mdh_A 248 TITVQKRGGALIQKWGRSSA--ASTAVSIADAIKSLVTPTPE--GDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYE 323 (375)
T ss_dssp HHHHHTHHHHHHHHTSSCCH--HHHHHHHHHHHHHHHSCCCT--TCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCE
T ss_pred HHHHHHHHHHHHHhcCCCch--HHHHHHHHHHHHHHhcCCCC--CeEEEEEEEeCCccCCCCCceEEEEEEEEcCCeeEE
Confidence 45588999999 99999987 678888888887 464 899999999999 79996699999999999999999
Q ss_pred Eec-CCCCHHHHHHHHHHHHHHHHHHHHHHhchhh
Q psy17699 91 IVN-QPLTQEEIEKLKKSAQAISQDYMYFLTTYIP 124 (149)
Q Consensus 91 vl~-l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~ 124 (149)
+++ ++||++|+++|++|++.|++..+.+. +|++
T Consensus 324 iv~~l~L~~~E~~~l~~Sa~~L~~e~~~~~-~~~~ 357 (375)
T 7mdh_A 324 LATDVSNDDFLWERIKKSEAELLAEKKCVA-HLTG 357 (375)
T ss_dssp ECCCCCCCHHHHHHHHHHHHHHHHHHHHTH-HHHT
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHh
Confidence 996 99999999999999999999877554 4443
No 34
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Probab=99.84 E-value=1.2e-20 Score=155.66 Aligned_cols=99 Identities=20% Similarity=0.190 Sum_probs=92.7
Q ss_pred chhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCC
Q psy17699 17 KISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQP 95 (149)
Q Consensus 17 ~~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~ 95 (149)
-.+.++.+|++| +.||+|+|++|.++++|+++|++|+ +.++|||++++| + |+|+|+||+||++|++++++++
T Consensus 210 ~~~~v~~~g~~ii~~kg~~~~~~a~a~~~~~~ai~~~~--~~~~~~~~~~~g----~-~~~~~vP~~i~~~Gv~~i~~~~ 282 (309)
T 1hyh_A 210 IEEEARKGGFTVLNGKGYTSYGVATSAIRIAKAVMADA--HAELVVSNRRDD----M-GMYLSYPAIIGRDGVLAETTLD 282 (309)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTC--CEEEEEEEECTT----T-CSEEEEEEEEETTEEEEECCCC
T ss_pred HHHHHHHhHHHHHhccCCchHHHHHHHHHHHHHHHcCC--CcEEEEEEEECC----C-CeEEEEEEEEeCCceEEEeCCC
Confidence 456688999999 9999999999999999999999997 799999999998 3 8999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
|+++|+++|++|++.|++.++++.++|
T Consensus 283 l~~~e~~~l~~s~~~l~~~~~~~~~~~ 309 (309)
T 1hyh_A 283 LTTDEQEKLLQSRDYIQQRFDEIVDTL 309 (309)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 999999999999999999999988764
No 35
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A
Probab=99.83 E-value=1e-20 Score=158.37 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=92.0
Q ss_pred hhhhhccchhh-cccCcceeeHHH-HHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEec-C
Q psy17699 18 ISVVFSAGNDI-KFMLNTIEGPRG-GLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVN-Q 94 (149)
Q Consensus 18 ~~~V~~ag~eI-~~KG~T~ygiA~-aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~-l 94 (149)
.+.++++|++| ++||.|+|++++ ++++++++|++|. ++.++|||++++|+||+++|+|+|+||+| ++|++++++ +
T Consensus 223 ~~~v~~~g~eii~~kg~~~~~~~a~a~~~~~~ai~~~~-~~~~~~~s~~~~g~yg~~~~~~~s~P~~i-~~Gv~~i~~~~ 300 (329)
T 1b8p_A 223 LPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGT-AGKWTTMGIPSDGSYGIPEGVIFGFPVTT-ENGEYKIVQGL 300 (329)
T ss_dssp HHHHHTHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECCSGGGCCTTCEEEEEEEE-ETTEEEECCCC
T ss_pred HHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHhcCC-CCcEEEEEEEecCccCCCCCeEEEEEEEE-cCCEEEecCCC
Confidence 35588999999 999998888655 8899999999983 37899999999999999669999999999 999999998 9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTT 121 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~ 121 (149)
+|+++|+++|++|++.|++.++.+++-
T Consensus 301 ~l~~~e~~~l~~s~~~l~~~~~~~~~~ 327 (329)
T 1b8p_A 301 SIDAFSQERINVTLNELLEEQNGVQHL 327 (329)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999987653
No 36
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Probab=99.82 E-value=1.8e-20 Score=156.71 Aligned_cols=100 Identities=8% Similarity=0.007 Sum_probs=90.2
Q ss_pred hhhhhccchhh-c---ccCcceeeHHHHHHHHHHhhhcCCC-CCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEe
Q psy17699 18 ISVVFSAGNDI-K---FMLNTIEGPRGGLTHNIQVPLLDFD-SNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIV 92 (149)
Q Consensus 18 ~~~V~~ag~eI-~---~KG~T~ygiA~aia~IveaIL~D~d-e~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl 92 (149)
.+.++++|++| + +||+|+|++|.++++++++|++|++ ++.++|| ++++|+| . +|+|+|+||+||++|+++++
T Consensus 203 ~~~v~~~g~eii~~k~~~g~t~~~~a~a~~~~~~ai~~~~~g~~~v~~~-~~~~g~y-~-~~~~~~~P~~ig~~Gv~~i~ 279 (314)
T 1mld_A 203 TGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVEC-SFVKSQE-T-DCPYFSTPLLLGKKGIEKNL 279 (314)
T ss_dssp HHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHHHHHHTCTTCEEE-EEEECCS-S-SSSEEEEEEEEETTEEEEEC
T ss_pred HHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHcCcCCCcceEEE-EEeCCcc-C-CceEEEEEEEEeCCeeEEec
Confidence 35578999999 7 5699999999999999999999952 3579999 7999999 4 49999999999999999999
Q ss_pred cC-CCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 93 NQ-PLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 93 ~l-~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
++ +|+++|+++|++|++.|++.++++.+
T Consensus 280 ~l~~l~~~e~~~l~~s~~~l~~~~~~~~~ 308 (314)
T 1mld_A 280 GIGKISPFEEKMIAEAIPELKASIKKGEE 308 (314)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999999988765
No 37
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=99.81 E-value=9.5e-20 Score=152.78 Aligned_cols=97 Identities=11% Similarity=0.025 Sum_probs=88.6
Q ss_pred hhhhhccchhh-ccc---CcceeeHHHHHHHHHHhh---hcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeE
Q psy17699 18 ISVVFSAGNDI-KFM---LNTIEGPRGGLTHNIQVP---LLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTH 90 (149)
Q Consensus 18 ~~~V~~ag~eI-~~K---G~T~ygiA~aia~IveaI---L~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~ 90 (149)
.+.++++|++| +.| |+|+|+||.++++|+++| ++|+ +.++||| +++|+|+ +|+|+|+||+||++|+++
T Consensus 211 ~~~v~~~g~eii~~k~~~gs~~~~~a~a~~~~~~ai~~~~~~~--~~v~~~~-~~~g~~~--~~~~~~vP~~ig~~Gv~~ 285 (326)
T 1smk_A 211 TDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGD--AGVIECA-FVSSQVT--ELPFFASKVRLGRNGIEE 285 (326)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHHHHHHHHHTC--SCEEEEE-EEECCSS--SSSEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHhCCC--CeEEEEE-eeccccC--CceEEEEEEEEeCCeeEE
Confidence 35577899999 755 999999999999999999 9996 7899998 7899876 489999999999999999
Q ss_pred Eec-CCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 91 IVN-QPLTQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 91 vl~-l~Ls~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
+++ ++|+++|+++|++|++.|++.++++.
T Consensus 286 i~~~~~L~~~e~~~l~~s~~~l~~~~~~~~ 315 (326)
T 1smk_A 286 VYSLGPLNEYERIGLEKAKKELAGSIEKGV 315 (326)
T ss_dssp ECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 99999999999999999999998874
No 38
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=99.69 E-value=7.3e-17 Score=131.78 Aligned_cols=97 Identities=25% Similarity=0.279 Sum_probs=91.0
Q ss_pred hhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCCC
Q psy17699 19 SVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLT 97 (149)
Q Consensus 19 ~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~Ls 97 (149)
+.++..+++| +.||.+.|++|.+.++|+++|+.|+ +.++|+|.+++|+|+.. +.++|+||.++++|++++++++|+
T Consensus 220 ~~~~~e~~~v~~~~G~~~~~~a~~~~sm~~di~~~~--~~ei~~s~~~~G~~~~~-~~~~gvp~~~~~~Gv~~i~~~~l~ 296 (319)
T 1lld_A 220 QEVKNAAYKIINGKGATNYAIGMSGVDIIEAVLHDT--NRILPVSSMLKDFHGIS-DICMSVPTLLNRQGVNNTINTPVS 296 (319)
T ss_dssp HHHHHHHHHHHTSCCSCCHHHHHHHHHHHHHHHTTC--CEEEEEEEECSSBTTBC-SSEEEEEEEEETTEEECCSCCCCC
T ss_pred HHHHHhhHhhhhCCCCchHHHHHHHHHHHHHHHcCC--CcEEEEEEEecCcCCcc-ceEEEEEEEEeCCeeEEEcCCCCC
Confidence 4567889999 9999999999999999999999996 78999999999999985 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy17699 98 QEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 98 ~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
++|+++|++|++.||+.++++
T Consensus 297 ~~e~~~l~~s~~~l~~~~~~~ 317 (319)
T 1lld_A 297 DKELAALKRSAETLKETAAQF 317 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 39
>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}
Probab=99.69 E-value=1.3e-17 Score=142.64 Aligned_cols=97 Identities=12% Similarity=0.157 Sum_probs=75.7
Q ss_pred chhhhhccchhh-cccC-cceeeHHHHHHHHHHhhhcCCCCCeEEEeeeec---cCcCCCccceEEEeeEEEcCCceeEE
Q psy17699 17 KISVVFSAGNDI-KFML-NTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKS---EGHHGIEEEVFLSLPCVMADNGVTHI 91 (149)
Q Consensus 17 ~~~~V~~ag~eI-~~KG-~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l---~G~YGi~~dV~lSvP~vIGr~GVe~v 91 (149)
-.+.++++|++| +.|| +|+|++|.+++++++++++|. +...|||+.+ +|+||+++|+|+|+||++|+ |+.++
T Consensus 239 ~~~~v~~~g~eIi~~kg~ss~~s~a~a~~~~~~~~l~~~--~~~~~vs~~v~s~~g~YGi~~~v~~s~Pv~~~~-G~~~i 315 (345)
T 4h7p_A 239 FVQVVRGRGAEIIQLRGLSSAMSAAKAAVDHVHDWIHGT--PEGVYVSMGVYSDENPYGVPSGLIFSFPCTCHA-GEWTV 315 (345)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHCC--CTTCCEEEEEECTTCTTCCCSSCEEEEEEEEET-TEEEE
T ss_pred HHHHHHhhhhhhhhcCCCcchhhHHHHHHHHHHHHhcCC--CCceEEEEEEEeCCCCcCCCCCEEEEEEEEEeC-CEEEE
Confidence 345689999999 7665 689999999999999999997 4456666544 69999977999999999985 55555
Q ss_pred e-cCCCCHHHHHHHHHHHHHHHHHHH
Q psy17699 92 V-NQPLTQEEIEKLKKSAQAISQDYM 116 (149)
Q Consensus 92 l-~l~Ls~eEqe~L~~Sa~~Ik~~i~ 116 (149)
+ .++|+++|+++|++|++.|++..+
T Consensus 316 v~~l~l~~~e~~~l~~s~~~L~~E~~ 341 (345)
T 4h7p_A 316 VSGKLNGDLGKQRLASTIAELQEERA 341 (345)
T ss_dssp CCSCC-----CGGGHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5 579999999999999999998544
No 40
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A
Probab=99.67 E-value=5e-16 Score=135.32 Aligned_cols=106 Identities=8% Similarity=0.014 Sum_probs=92.1
Q ss_pred hhhhccchhh-c----------ccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcC-CCccceEEEeeEEEcCC
Q psy17699 19 SVVFSAGNDI-K----------FMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHH-GIEEEVFLSLPCVMADN 86 (149)
Q Consensus 19 ~~V~~ag~eI-~----------~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~Y-Gi~~dV~lSvP~vIGr~ 86 (149)
+.+++++++| + +||+| ++|.++++|++||++|+ ++++|||++.+|+| |+++|+++++||+||++
T Consensus 268 ~~~~~~~~~i~~~~~~~~~~l~~kg~t--~~~~~a~~ii~AI~~d~--~~~~~vsv~n~G~i~~lp~d~~vevP~~vg~~ 343 (417)
T 1up7_A 268 MKIEKELFEKYRTAVEIPEELTKRGGS--MYSTAAAHLIRDLETDE--GKIHIVNTRNNGSIENLPDDYVLEIPCYVRSG 343 (417)
T ss_dssp HHHHHHHHHHHTTCSSCCGGGGGSTTT--THHHHHHHHHHHHHSSS--CEEEEEEEECTTSSTTSCTTCEEEEEEEEETT
T ss_pred HHHHHHHHHHHHhhcccchhhhhcCCc--HHHHHHHHHHHHHHcCC--CeEEEEEEecCCccCCCCCCeEEEEeEEEeCC
Confidence 3455667777 3 57888 45999999999999996 89999999999999 78569999999999999
Q ss_pred ceeEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhhh
Q psy17699 87 GVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQ 128 (149)
Q Consensus 87 GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~~ 128 (149)
|+++++..+|+++|+++|+.+++..+.+++.+++.=--+++|
T Consensus 344 Gi~~i~~~~L~~~e~~~l~~~~~~e~l~veA~~~g~~~~~~~ 385 (417)
T 1up7_A 344 RVHTLSQGKGDHFALSFIHAVKMYERLTIEAYLKRSKKLALK 385 (417)
T ss_dssp EEEEBCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ceEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999999999999887765555544
No 41
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2
Probab=99.58 E-value=8.7e-15 Score=128.57 Aligned_cols=98 Identities=12% Similarity=-0.004 Sum_probs=80.9
Q ss_pred hhccchhh-c-----ccC-----cceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcC-CCccceEEEeeEEEcCCce
Q psy17699 21 VFSAGNDI-K-----FML-----NTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHH-GIEEEVFLSLPCVMADNGV 88 (149)
Q Consensus 21 V~~ag~eI-~-----~KG-----~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~Y-Gi~~dV~lSvP~vIGr~GV 88 (149)
+++.+++| + .|+ .+.+++|.++++|++||++|+ ++++|||++.+|+| |+++|+++++||+||++|+
T Consensus 291 ~~~~~~ei~~~~~~~~k~~~~~~~~~~~~~~~a~~ii~AI~~d~--~~~~~vsv~n~G~i~~lp~d~~vevP~vvg~~Gi 368 (450)
T 1s6y_A 291 LEKELFELYKDPNLAIKPPQLEKRGGAYYSDAACSLISSIYNDK--RDIQPVNTRNNGAIASISAESAVEVNCVITKDGP 368 (450)
T ss_dssp HHHHHHTTTTCC-----------CCSCCHHHHHHHHHHHHHHTC--CCEEEEEEECTTSBTTSCTTSEEEEEEEEETTEE
T ss_pred HHHHHHHHHhhhccccccchhhcccchHHHHHHHHHHHHHHcCC--CeEEEEEeecCceecCCCCCeEEEEeEEEcCCCe
Confidence 55667777 2 333 445688999999999999997 79999999999999 7866999999999999999
Q ss_pred eEEecCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 89 THIVNQPLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 89 e~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
++++..+|+++|+++++.+++.-+-+++.+++
T Consensus 369 ~~i~~~~L~~~e~~l~~~~~~~e~l~veAa~~ 400 (450)
T 1s6y_A 369 KPIAVGDLPVAVRGLVQQIKSFERVAAEAAVT 400 (450)
T ss_dssp EECCCBCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998766655554443
No 42
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2
Probab=99.55 E-value=2e-14 Score=127.16 Aligned_cols=88 Identities=9% Similarity=0.095 Sum_probs=75.7
Q ss_pred cC---ccee---eHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcC-CCccceEEEeeEEEcCCceeEEecCCCCHHHHHH
Q psy17699 31 ML---NTIE---GPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHH-GIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEK 103 (149)
Q Consensus 31 KG---~T~y---giA~aia~IveaIL~D~de~~IlpvS~~l~G~Y-Gi~~dV~lSvP~vIGr~GVe~vl~l~Ls~eEqe~ 103 (149)
|| +++| ++|.++++|++||++|+ ++++|||++.+|.| |+++|+|+++||+||++|+++++..+|+++|+..
T Consensus 330 ~~~~~~~~~~~~~~~~~a~~ii~AI~~d~--~~v~~vsv~n~G~i~glp~d~~veVP~vvg~~Gi~pi~~~~Lp~~~~~l 407 (472)
T 1u8x_X 330 EQSSENSEIKIDDHASYIVDLARAIAYNT--GERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITVGTIPQFQKGL 407 (472)
T ss_dssp HTSCCSCSSCCCTTTHHHHHHHHHHHHTC--CEEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCBCCCHHHHHH
T ss_pred cCCcccccccccHHHHHHHHHHHHHhcCC--CeEEEEEeecCceecCcCCCeEEEEeEEEcCCCceEeecCCCCHHHHHH
Confidence 77 5666 99999999999999997 89999999999998 7866999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy17699 104 LKKSAQAISQDYMYFLT 120 (149)
Q Consensus 104 L~~Sa~~Ik~~i~~~~~ 120 (149)
++.....-+-+++.+++
T Consensus 408 ~~~~~~~e~l~veAa~~ 424 (472)
T 1u8x_X 408 MEQQVSVEKLTVEAWAE 424 (472)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88866554444444333
No 43
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Probab=99.09 E-value=5.8e-10 Score=98.34 Aligned_cols=86 Identities=12% Similarity=-0.030 Sum_probs=72.6
Q ss_pred HHHHHHHHhhhcCCCCCeEEEeeeeccCcC-CCccceEEEeeEEEcCCceeEEecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy17699 40 GGLTHNIQVPLLDFDSNVESCEKSKSEGHH-GIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 40 ~aia~IveaIL~D~de~~IlpvS~~l~G~Y-Gi~~dV~lSvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
.++++|++||++|+ +.++|||++.+|.| |+++|+++++||+||++|++++...+|++.++..++.....-+-+++.+
T Consensus 326 e~~~~ii~aI~~d~--~~~~~vnv~n~G~i~~lp~d~~vevP~~v~~~Gi~pi~~g~Lp~~~~~l~~~~~~~e~l~veAa 403 (450)
T 3fef_A 326 EEGVNIIAALLGLG--ELVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPILSGALPKGVEMLAARHISNQEAVADAG 403 (450)
T ss_dssp CCHHHHHHHHTTSC--CEEEEEEEECSSSSTTSCTTSEEEEEEEEETTEEEEBCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--CeEEEEEeecCcEecCCCCCeEEEEEEEEcCCCceecccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999997 79999999999998 8877999999999999999999988999999998888777666666666
Q ss_pred Hhchhhhhh
Q psy17699 119 LTTYIPKIF 127 (149)
Q Consensus 119 ~~~~~~~~~ 127 (149)
++.=--+++
T Consensus 404 ~~g~~~~a~ 412 (450)
T 3fef_A 404 LTKDTGLAF 412 (450)
T ss_dssp HHTCHHHHH
T ss_pred HhCCHHHHH
Confidence 655433333
No 44
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2
Probab=97.51 E-value=0.00075 Score=59.85 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=63.3
Q ss_pred HHHHHHHHhhhcCCCCCeEEEeeeeccC-cCCCccceEEEeeEEEcCCceeEEecCC-CCHHHHHH-HHHHHHHHHHHHH
Q psy17699 40 GGLTHNIQVPLLDFDSNVESCEKSKSEG-HHGIEEEVFLSLPCVMADNGVTHIVNQP-LTQEEIEK-LKKSAQAISQDYM 116 (149)
Q Consensus 40 ~aia~IveaIL~D~de~~IlpvS~~l~G-~YGi~~dV~lSvP~vIGr~GVe~vl~l~-Ls~eEqe~-L~~Sa~~Ik~~i~ 116 (149)
..+..|++||++|+ +.++.+.+.-+| -.|+++|+++-+||+|+++|++.+.--+ |.+.-... ++.....-+-+++
T Consensus 354 e~a~~ii~ai~~~~--~~~~~vnv~N~G~I~~lp~d~vVEvp~~v~~~G~~p~~~g~~lP~~~~~l~~~~~~~~e~l~ve 431 (480)
T 1obb_A 354 EQHIPFIDALLNDN--KARFVVNIPNKGIIHGIDDDVVVEVPALVDKNGIHPEKIEPPLPDRVVKYYLRPRIMRMEMALE 431 (480)
T ss_dssp CSHHHHHHHHHHCC--CEEEEEEEECTTSSTTSCTTSEEEEEEEEETTEEEECCCSSCCCHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CeEEEEEeeCCceeCCCCCCeEEEEEEEEcCCCCEeeccCCCCCHHHHhHHHHHHHHHHHHHHH
Confidence 46889999999996 789999999998 4799989999999999999999987668 98887777 5555544444444
Q ss_pred HHHh
Q psy17699 117 YFLT 120 (149)
Q Consensus 117 ~~~~ 120 (149)
.+++
T Consensus 432 A~~~ 435 (480)
T 1obb_A 432 AFLT 435 (480)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4333
No 45
>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*
Probab=97.33 E-value=0.0013 Score=58.03 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=47.2
Q ss_pred HHHHHHHHhhhcCCCCCeEEEeeeeccCcC-CCccceEEEeeEEEcCCceeEEecCCCCH
Q psy17699 40 GGLTHNIQVPLLDFDSNVESCEKSKSEGHH-GIEEEVFLSLPCVMADNGVTHIVNQPLTQ 98 (149)
Q Consensus 40 ~aia~IveaIL~D~de~~IlpvS~~l~G~Y-Gi~~dV~lSvP~vIGr~GVe~vl~l~Ls~ 98 (149)
..++.|++||++|+ +.++.+++.-+|.. ++++|+++-|||+|+++|+..+---++.+
T Consensus 344 e~a~~ii~AI~~~~--~~~~~vNv~N~G~I~nLP~DavVEVpc~Vd~~Gi~P~~vg~~p~ 401 (477)
T 3u95_A 344 EQHIPFINAIANNK--RVRLFLNVENQGALKDFPDDLVMELPVWVDSSGIHREKVEPDLT 401 (477)
T ss_dssp CSHHHHHHHHHHCC--CEEEEEEEECTTSSTTSCTTSEEEEEEEEETTEEEECCCCSCCC
T ss_pred HHHHHHHHHHhCCC--CeEEEEEeecCcccCCCCCCcEEEEEEEEcCCCcccccCCCCCH
Confidence 45678999999997 78999999999975 78789999999999999998764334443
No 46
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=60.36 E-value=13 Score=23.12 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYI 123 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~ 123 (149)
.||++|++.+.+-|+..++.++.-.+.|+
T Consensus 39 ~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~ 67 (67)
T 3fgh_A 39 NLSDSEKELYIQHAKEDETRYHNEMKSWA 67 (67)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 79999999999999999999888776664
No 47
>1bin_A Leghemoglobin A; heme, nitrogen fixation, multigene family, oxygen transport; HET: HEM; 2.20A {Glycine max} SCOP: a.1.1.2 PDB: 1fsl_A*
Probab=60.31 E-value=10 Score=26.48 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
+.||++|++.+++|...++.....+...+..++|
T Consensus 1 m~lt~~~~~~v~~sw~~v~~~~~~~~~~fy~rlf 34 (143)
T 1bin_A 1 VAFTEKQDALVSSSFEAFKANIPQYSVVFYTSIL 34 (143)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3599999999999999998877777666666666
No 48
>2it9_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; HET: MSE PGE; 1.80A {Prochlorococcus marinus} SCOP: d.18.1.3
Probab=55.61 E-value=20 Score=26.61 Aligned_cols=43 Identities=9% Similarity=0.163 Sum_probs=38.7
Q ss_pred eeEEEcCCceeEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 79 LPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 79 vP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
.|.+||.++.- +.||+.|.+.|-.-...|.+++..+.+.|++.
T Consensus 21 f~~LIGge~WA----iELTe~E~~~f~~Ll~qL~~~~~~i~~eLM~E 63 (127)
T 2it9_A 21 FSTLIGGETWA----IELDKSEWKILVEVVMELCDQYKLVKEQLMGD 63 (127)
T ss_dssp CCEEEECSSEE----EEECHHHHHHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred CCEEEccCcee----eeecHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 57899998764 56999999999999999999999999999986
No 49
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=54.87 E-value=14 Score=26.52 Aligned_cols=32 Identities=9% Similarity=0.017 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
+=|++-+++.-..+++.|++.++.....|+||
T Consensus 79 ~fLp~YD~R~~q~~i~~L~~~l~e~r~~l~PK 110 (111)
T 2l3l_A 79 FFLAAYDLRQGQEALARLQAALAERRRGLQPK 110 (111)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35788999999999999999999999999998
No 50
>2vhb_A Hemoglobin; heme, respiratory protein, oxygen transport; HET: HEM; 1.76A {Vitreoscilla stercoraria} SCOP: a.1.1.2 PDB: 1vhb_A* 3vhb_A* 4vhb_A*
Probab=52.09 E-value=16 Score=25.73 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
+||++|++.+++|...++.....+-..+..++|
T Consensus 1 ~lt~~~~~~v~~sw~~v~~~~~~~~~~fy~rlf 33 (146)
T 2vhb_A 1 MLDQQTINIIKATVPVLKEHGVTITTTFYKNLF 33 (146)
T ss_dssp -CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 489999999999999998877777666666666
No 51
>2wy4_A Single domain haemoglobin; heme, transport, oxygen transport; HET: HEM; 1.35A {Campylobacter jejuni}
Probab=49.29 E-value=23 Score=24.62 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhchhhhhhh
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQ 128 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~~ 128 (149)
||++|++.+++|...++.....+-..+..++|.
T Consensus 1 lt~~~~~~v~~sw~~v~~~~~~~~~~fy~rlf~ 33 (140)
T 2wy4_A 1 MTKEQIQIIKDCVPILQKNGEDLTNEFYKIMFN 33 (140)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 789999999999999988877777766666663
No 52
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=49.08 E-value=7.5 Score=23.34 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=18.6
Q ss_pred EEecCCCCHHHHHHHHHHHHHH
Q psy17699 90 HIVNQPLTQEEIEKLKKSAQAI 111 (149)
Q Consensus 90 ~vl~l~Ls~eEqe~L~~Sa~~I 111 (149)
..+.+.||++|.+.|++-|+.-
T Consensus 16 ~~i~vRlt~eE~~~l~~~A~~~ 37 (51)
T 2ba3_A 16 VVRTLRFSPVEDETIRKKAEDS 37 (51)
T ss_dssp EEEEEEECHHHHHHHHHHHHHH
T ss_pred eeEEEEECHHHHHHHHHHHHHh
Confidence 5678899999999999988754
No 53
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=48.87 E-value=17 Score=22.00 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 98 QEEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 98 ~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
++-+++.-..++.|++.++.+++.|.++
T Consensus 11 ~~rkerIv~eCnavrqALQdLlseY~~~ 38 (40)
T 4e17_B 11 DDRRERIVAECNAVRQALQDLLSEYMGN 38 (40)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556888889999999999999999875
No 54
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=48.72 E-value=24 Score=24.17 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
.|+++|.+.+.+-|+..++.+..-.+.|.++.-
T Consensus 47 ~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~ 79 (101)
T 1v63_A 47 RISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLS 79 (101)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 799999999999999999999998888887653
No 55
>4b4y_A Neuroglobin; transport protein, nervous system evolution, globin evolutio cnidarian, metazoan; HET: HEM; 2.30A {Symsagittifera roscoffensis}
Probab=47.50 E-value=18 Score=26.08 Aligned_cols=35 Identities=11% Similarity=0.287 Sum_probs=25.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 93 NQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 93 ~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
.+.||++|++.++.|...++.....+-.....++|
T Consensus 6 ~m~Ls~~~~~~I~~sw~~v~~~~~~~g~~~y~rlF 40 (154)
T 4b4y_A 6 AMQVSEEQQSLIMEDVQVLLPNYDDFVEDVLQQFM 40 (154)
T ss_dssp CCCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 36899999999999999997765554444444444
No 56
>2nvn_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 2.50A {Synechococcus elongatus} SCOP: d.18.1.3
Probab=42.82 E-value=20 Score=26.52 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=38.6
Q ss_pred EeeEEEcCCceeEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 78 SLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 78 SvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
..|.+||.++.- +.||+.|.+.|-.-...|.+++..+.+.|+|.
T Consensus 22 ~f~~LIGge~WA----iELTe~E~~~f~~Ll~qL~~~~~~i~~eLM~E 65 (122)
T 2nvn_A 22 RYPGLVGTTDWA----VELTAAEMADFCRLVQQLAETIAAIAPELMPE 65 (122)
T ss_dssp SCCEEEECSSCE----EEECHHHHHHHHHHHHHHHHHHHTSCCCSSCS
T ss_pred cCCEEEccCchh----eeeCHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 367899998764 56999999999999999999999999999885
No 57
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=42.81 E-value=29 Score=26.65 Aligned_cols=43 Identities=19% Similarity=0.185 Sum_probs=24.9
Q ss_pred ceeEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhc
Q psy17699 87 GVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQL 129 (149)
Q Consensus 87 GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~~~ 129 (149)
|+-+-.-++||+|.++++++-.+.-++....+...+.-+--+|
T Consensus 59 gm~~q~~LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL 101 (175)
T 3lay_A 59 GMWQQGGSPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEY 101 (175)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334799999999999887777776666665555554444
No 58
>1b0b_A Hemoglobin; hemoprotein, sulfide carrier, globins, oxygen transport, oxygen storage/transport complex; HET: HEM; 1.43A {Lucina pectinata} SCOP: a.1.1.2 PDB: 1ebt_A* 1flp_A* 1moh_A*
Probab=42.79 E-value=37 Score=23.80 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
.||++|++.+++|...++...+..-.....++|
T Consensus 1 ~Ls~~~~~~v~~sw~~v~~~~~~~g~~~~~rlF 33 (142)
T 1b0b_A 1 SLSAAQKDNVKSSWAKASAAWGTAGPEFFMALF 33 (142)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHccHHhHHHHHHHHHH
Confidence 489999999999999997665554444433333
No 59
>2lhb_A Hemoglobin V (cyano Met); oxygen transport; HET: HEM; 2.00A {Petromyzon marinus} SCOP: a.1.1.2 PDB: 3lhb_A* 1f5o_A* 1f5p_A* 1uc3_A*
Probab=41.75 E-value=33 Score=24.34 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
+.||++|++.+++|...++.....+-.....++|
T Consensus 9 m~lt~~~~~~V~~sw~~v~~~~~~~g~~~~~rlF 42 (149)
T 2lhb_A 9 APLSAAEKTKIRSAWAPVYSTYETSGVDILVKFF 42 (149)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 4699999999999999998765554444444444
No 60
>1mba_A Myoglobin; oxygen storage; HET: HEM; 1.60A {Aplysia limacina} SCOP: a.1.1.2 PDB: 2fal_A* 3mba_A* 4mba_A* 5mba_A* 2fam_A* 1dm1_A*
Probab=41.71 E-value=31 Score=24.28 Aligned_cols=31 Identities=13% Similarity=0.018 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
.||++|++.+++|-..++...+..-.....+
T Consensus 2 ~Lt~~~~~~v~~sw~~v~~~~~~~g~~~~~r 32 (147)
T 1mba_A 2 SLSAAEADLAGKSWAPVFANKNANGLDFLVA 32 (147)
T ss_dssp CCCHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcHHHhHHHHHHH
Confidence 5899999999999999976554443333333
No 61
>1gdj_A Leghemoglobin (deoxy); oxygen transport; HET: HEM; 1.70A {Lupinus luteus} SCOP: a.1.1.2 PDB: 1gdi_A* 1gdk_A* 1gdl_A* 1lh1_A* 1lh2_A* 1lh3_A* 1lh5_A* 1lh6_A* 1lh7_A* 2gdm_A* 2lh1_A* 2lh2_A* 2lh3_A* 2lh5_A* 2lh6_A* 2lh7_A*
Probab=41.21 E-value=25 Score=24.77 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
.||++|++.+++|...++.....+-..+..++|
T Consensus 2 ~lt~~~~~~v~~sw~~v~~~~~~~g~~fy~~lf 34 (153)
T 1gdj_A 2 ALTESQAALVKSSWEEFNANIPKHTHRFFILVL 34 (153)
T ss_dssp CSCHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 589999999999999997666555554444444
No 62
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=40.90 E-value=37 Score=24.31 Aligned_cols=35 Identities=11% Similarity=0.398 Sum_probs=30.4
Q ss_pred ceEEEeeEEEcCCceeEEecCCCCHHHHHHHHHHH
Q psy17699 74 EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSA 108 (149)
Q Consensus 74 dV~lSvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa 108 (149)
+.|+++|..=..+|--+-+--|+|.+=+++|++++
T Consensus 45 GlFVaMPSrk~~~GeyrDI~hPIt~e~Re~i~~aV 79 (105)
T 2i9z_A 45 GLFVAMPSKRTPDGEFRDIAHPINSDMRQEIQDAV 79 (105)
T ss_dssp EEEEECCEEECTTSCEEECEEESSHHHHHHHHHHH
T ss_pred ceEEECCCcCCCCCCEEEEEEECCHHHHHHHHHHH
Confidence 78999999998899877777899999999988753
No 63
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.98 E-value=39 Score=22.02 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
.|+++|.+.+.+-|+..++.+..-.+.|
T Consensus 58 ~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 85 (86)
T 2eqz_A 58 TMSGKEKSKFDEMAKADKVRYDREMKDY 85 (86)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7999999999999999999988877665
No 64
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=38.40 E-value=37 Score=23.40 Aligned_cols=35 Identities=11% Similarity=0.398 Sum_probs=30.5
Q ss_pred ceEEEeeEEEcCCceeEEecCCCCHHHHHHHHHHH
Q psy17699 74 EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSA 108 (149)
Q Consensus 74 dV~lSvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa 108 (149)
+.|+++|..=..+|--+-+--|+|.+=+++|++++
T Consensus 45 GlFVaMPs~k~~~g~y~Di~hPit~e~Re~i~~aV 79 (87)
T 2i9x_A 45 GLFVAMPSKRTPDGEFRDIAHPINSDMRQEIQDAV 79 (87)
T ss_dssp EEEEECCEEECTTSCEEECEEECSHHHHHHHHHHH
T ss_pred ceEEECCCcCCCCCCEEEEEEECCHHHHHHHHHHH
Confidence 78999999998888877777889999999998864
No 65
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=38.39 E-value=40 Score=23.17 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
.|+++|++.|.+..+.+.+++++.++
T Consensus 124 ~l~~~e~~~l~~~l~~l~~~l~~~~~ 149 (151)
T 3kp7_A 124 DFDSKEIEKVRQVLEIIDYRIQSYTS 149 (151)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58888888888887777777666543
No 66
>3pt8_A Hemoglobin II; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} SCOP: a.1.1.0 PDB: 3pi1_A* 2olp_A* 3pi3_A* 3pi4_A* 3pt7_A* 3pi2_A*
Probab=38.03 E-value=30 Score=24.52 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
+||++|++.++.|...++.....+-..+..++|
T Consensus 3 ~Lt~~~~~~i~~sw~~v~~~~~~~g~~~y~rlF 35 (152)
T 3pt8_A 3 TLTNPQKAAIRSSWSKFMDNGVSNGQGFYMDLF 35 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 699999999999999997766554444444444
No 67
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=37.74 E-value=27 Score=24.07 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhchhhhhhh
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQ 128 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~~ 128 (149)
||++|++.+++|...++.....+-.....++|.
T Consensus 1 lt~~~~~~i~~sw~~v~~~~~~~g~~fy~rlf~ 33 (131)
T 3ubc_A 1 IDQKEKELIKESWKRIEPNKNEIGLLFYANLFK 33 (131)
T ss_dssp CCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 799999999999999977766665555555553
No 68
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Probab=37.50 E-value=33 Score=26.63 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
|++|.+.++++++...+.++.+.+.+-|-
T Consensus 6 s~~EI~~mr~A~~i~~~a~~~~~~~ikpG 34 (264)
T 3tb5_A 6 SPREIEMMDESGELLADVHRHLRTFIKPG 34 (264)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 79999999999999988888888777663
No 69
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=37.46 E-value=23 Score=25.13 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
-.|+++|++.|....+.|.+++.++.+
T Consensus 116 ~~l~~ee~~~l~~~L~kl~~nl~~l~~ 142 (151)
T 4aik_A 116 GGISSDEIAVLSGLIDKLEKNIIQLQT 142 (151)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999888888876543
No 70
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=37.43 E-value=29 Score=24.75 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
+||++|++.++.|...++.....+-....-++|
T Consensus 9 ~Lt~~~~~~I~~sw~~v~~~~~~~g~~~~~rlF 41 (146)
T 3g46_A 9 QLTADVKKDLRDSWKVIGSDKKGNGVALMTTLF 41 (146)
T ss_dssp TCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 799999999999999997665544444333333
No 71
>3pt8_B Hemoglobin III; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} PDB: 3pt7_B*
Probab=36.34 E-value=34 Score=24.29 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
..||++|++.++.|...++.....+-..+..++|
T Consensus 2 ~~Ls~~~~~~i~~sw~~v~~~~~~~g~~~y~~lF 35 (152)
T 3pt8_B 2 SGLTGPQKAALKSSWSRFMNNAVTNGTNFYMDLF 35 (152)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhCHHhHHHHHHHHHH
Confidence 3699999999999999997776554444444444
No 72
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=35.86 E-value=47 Score=22.98 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
.|+++|.+.+.+-|+..++.+..-...|.++.-
T Consensus 54 ~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~ 86 (108)
T 1v64_A 54 LLSQKEKDAYHKKCDQKKKDYEVELLRFLESLP 86 (108)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 689999999999999999999998888887653
No 73
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=35.61 E-value=90 Score=21.23 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=33.8
Q ss_pred ceEEEeeEEEcCC---ceeEEec----CCCCHHHHHHHHHHHHHHHHHHHHH
Q psy17699 74 EVFLSLPCVMADN---GVTHIVN----QPLTQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 74 dV~lSvP~vIGr~---GVe~vl~----l~Ls~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
.-++++|...+.. |+-.+.. -.+++++.+.|+.-+..+--.++..
T Consensus 108 ~s~~~vPl~~~~~~~~GvL~l~~~~~~~~f~~~d~~lL~~la~~~a~al~~a 159 (181)
T 2qyb_A 108 KSFAHIPISRKGEPPFGILSVFSRTIVGLFNEPFLNLLESLAGQLAQAVKIV 159 (181)
T ss_dssp CEEEEEEECCTTSCCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEeCCCeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999888665 6555543 3689999999999888887777654
No 74
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=34.07 E-value=33 Score=24.04 Aligned_cols=32 Identities=9% Similarity=0.133 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
||++|++.+++|-..++.....+-.....++|
T Consensus 2 lt~~~~~~v~~sw~~v~~~~~~~g~~~y~rlF 33 (141)
T 2w72_C 2 LSPADKTNVKAAWGKVGAHAGEYGAEAYERMF 33 (141)
T ss_dssp CCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 89999999999999997665554444444444
No 75
>1x3k_A Hemoglobin component V; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.64A {Tokunagayusurika akamusi} PDB: 2zwj_A* 3a5a_A* 3a5b_A* 3a5g_A* 3a9m_A* 3arj_A* 3ark_A* 3arl_A*
Probab=33.82 E-value=41 Score=24.13 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
+.||++|++.+++|-..++.....
T Consensus 3 ~~Lt~~~~~~V~~sw~~v~~~~~~ 26 (152)
T 1x3k_A 3 VGLSDSEEKLVRDAWAPIHGDLQG 26 (152)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcHHh
Confidence 459999999999999998765553
No 76
>1it2_A Hemoglobin; hagfish, deoxy form, oxygen storage/transport complex; HET: HEM; 1.60A {Eptatretus burgeri} SCOP: a.1.1.2 PDB: 1it3_A*
Probab=33.82 E-value=41 Score=23.94 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
+.||++|++.+++|...++...+.+-....-++|
T Consensus 9 m~Lt~~~~~~V~~sw~~v~~~~~~~g~~~~~rlF 42 (146)
T 1it2_A 9 PTLTDGDKKAINKIWPKIYKEYEQYSLNILLRFL 42 (146)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 3599999999999999997554443333333333
No 77
>1cg5_A Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_A*
Probab=33.77 E-value=46 Score=23.52 Aligned_cols=32 Identities=9% Similarity=0.241 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
||++|++.+++|...++...+.+-.....++|
T Consensus 2 lt~~~~~~V~~sw~~v~~~~~~~g~~~~~rlF 33 (141)
T 1cg5_A 2 LSSQNKKAIEELGNLIKANAEAWGADALARLF 33 (141)
T ss_dssp CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 89999999999999997765554444444444
No 78
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=33.65 E-value=56 Score=21.96 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
-.|+++|++.|.+..+.+.+++++..+
T Consensus 113 ~~l~~~e~~~l~~~l~~l~~~l~~~~~ 139 (144)
T 1lj9_A 113 QGLSEVEISQLADYLVRMRKNVSEDWE 139 (144)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhHHHHHH
Confidence 368888888888888888777666544
No 79
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Probab=33.51 E-value=30 Score=24.33 Aligned_cols=33 Identities=21% Similarity=0.152 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
.||++|++.+++|...++.....+-.....++|
T Consensus 2 ~lt~~~~~~v~~sw~~v~~~~~~~g~~~y~rlF 34 (142)
T 1jeb_A 2 SLTKTERTIIVSMWAKISTQADTIGTETLERLF 34 (142)
T ss_dssp CCCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 499999999999999986554443333333333
No 80
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=32.38 E-value=50 Score=21.01 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
.||++|.+.+.+-|+..++.+..-...|
T Consensus 43 ~ls~eeK~~y~~~A~~~k~~y~~~~~~Y 70 (80)
T 1gt0_D 43 LLSETEKRPFIDEAKRLRALHMKEHPDY 70 (80)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 7999999999999999999888766555
No 81
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=32.30 E-value=51 Score=20.72 Aligned_cols=27 Identities=19% Similarity=-0.022 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTT 121 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~ 121 (149)
.||++|++.+.+-|+..++.+..-...
T Consensus 45 ~ls~~eK~~y~~~A~~~k~~y~~~~~~ 71 (76)
T 1hry_A 45 MLTEAEKWPFFQEAQKLQAMHREKYPN 71 (76)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 799999999999999999887765443
No 82
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=32.16 E-value=52 Score=19.18 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=18.9
Q ss_pred ceeEEecCCCCHHHHHHHHHHHHH
Q psy17699 87 GVTHIVNQPLTQEEIEKLKKSAQA 110 (149)
Q Consensus 87 GVe~vl~l~Ls~eEqe~L~~Sa~~ 110 (149)
.-...+.+.|++++.++|++-|+.
T Consensus 7 ~~~~~i~vrl~~el~~~l~~~a~~ 30 (55)
T 2k9i_A 7 LNGIKLGVYIPQEWHDRLMEIAKE 30 (55)
T ss_dssp TCCEEEEEEECHHHHHHHHHHHHH
T ss_pred CccceEEEEcCHHHHHHHHHHHHH
Confidence 334566789999999999998844
No 83
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.87 E-value=33 Score=22.76 Aligned_cols=33 Identities=21% Similarity=0.142 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
.|+++|++.+.+-|+..++.++.-...|-.+.-
T Consensus 48 ~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~ 80 (92)
T 2cs1_A 48 TLSEEEKLKYEEKATKDLERYNSQMKRAIEQES 80 (92)
T ss_dssp SSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 799999999999999999999988888876543
No 84
>1wmu_A Hemoglobin D alpha chain; hemoglobin D, reptilia, the aldabra giant tortoise, geochelone gigantea, oxygen storage/transport complex; HET: HEM; 1.65A {Dipsochelys dussumieri} SCOP: a.1.1.2 PDB: 1v75_A* 2z6n_A* 1hbr_A*
Probab=31.40 E-value=39 Score=23.73 Aligned_cols=32 Identities=13% Similarity=0.259 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
||++|++.+++|-..++...+.+-.....++|
T Consensus 2 lt~~~~~~v~~sw~~v~~~~~~~g~~~~~rlF 33 (141)
T 1wmu_A 2 LTEDDKQLIQHVWEKVLEHQEDFGAEALERMF 33 (141)
T ss_dssp CCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 89999999999999997665544444444443
No 85
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina arenicola} SCOP: a.1.1.2
Probab=31.23 E-value=34 Score=24.42 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYM 116 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~ 116 (149)
..||++|++.+++|-..++....
T Consensus 11 ~~lt~~~~~~i~~sw~~v~~~~~ 33 (158)
T 1hlb_A 11 GDLTLAQKKIVRKTWHQLMRNKT 33 (158)
T ss_dssp SCSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHHHhCHH
Confidence 47999999999999999976433
No 86
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.98 E-value=67 Score=21.69 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
.|+++|++.+.+-|+..++.+..-...|-.+
T Consensus 58 ~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~ 88 (102)
T 2co9_A 58 GLGEEQKQVYKKKTEAAKKEYLKQLAAYRAS 88 (102)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7999999999999999999988887777543
No 87
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C; 1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB: 1qxw_A* 1qxz_A*
Probab=30.85 E-value=48 Score=25.32 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
=|++|.+.++++++...+.++.+.+.+-|.
T Consensus 4 Ks~~Ei~~~r~A~~i~~~~~~~~~~~i~~G 33 (252)
T 1qxy_A 4 KTEEELQALKEIGYICAKVRNTMQAATKPG 33 (252)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 379999999999999888888877766663
No 88
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for infectious disease, S aminopeptidase, protease, epidermic typhus; 1.70A {Rickettsia prowazekii} PDB: 3mr1_A
Probab=30.77 E-value=50 Score=25.64 Aligned_cols=30 Identities=10% Similarity=0.262 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
-|++|.++++++++...+.++.+.+.+-|.
T Consensus 9 Ks~~Ei~~~r~A~~i~~~~~~~~~~~i~pG 38 (262)
T 3mx6_A 9 HTEKDFIKMRAAGKLAAETLDFITDHVKPN 38 (262)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHGGGCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 589999999999999999888877766553
No 89
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=30.59 E-value=35 Score=22.02 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYIP 124 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~ 124 (149)
.||++|++.+.+-|+..++.+..-...|-+
T Consensus 50 ~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 79 (83)
T 1aab_A 50 TMSAKEKGKFEDMAKADKARYEREMKTYIP 79 (83)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999888877754
No 90
>2w31_A Globin; oxygen transport, hexacoordination; HET: HEM; 1.50A {Geobacter sulfurreducens}
Probab=30.56 E-value=39 Score=23.98 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhhh
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQ 128 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~~ 128 (149)
+.||+++.+.++.+...+.+....+.+++-.++|+
T Consensus 11 ~~lt~~d~~~l~~~~p~l~~~~~~i~~~FY~~l~~ 45 (162)
T 2w31_A 11 YRFTDEDAELLGSLFPLAETNKERLADQFYDYLLG 45 (162)
T ss_dssp HTCCHHHHHHHHHTHHHHHHTHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHc
Confidence 47999999999999999999999888887777664
No 91
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=30.12 E-value=56 Score=23.09 Aligned_cols=35 Identities=14% Similarity=0.395 Sum_probs=30.7
Q ss_pred ceEEEeeEEEcCCceeEEecCCCCHHHHHHHHHHH
Q psy17699 74 EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSA 108 (149)
Q Consensus 74 dV~lSvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa 108 (149)
+.|+++|..=..+|--+-+--|+|.+=+++|++++
T Consensus 45 GlFVaMPSrk~~~Gey~DI~hPit~e~Re~i~~aV 79 (100)
T 2ia9_A 45 GLFVAMPSKRTPDGEFRDITHPINSSTRGKIQDAV 79 (100)
T ss_dssp EEEEECCEEECTTSCEEESEEESSHHHHHHHHHHH
T ss_pred ceEEECCCcCCCCCCEEEEEEECCHHHHHHHHHHH
Confidence 68999999998899777677799999999998864
No 92
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=29.98 E-value=13 Score=24.21 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=30.3
Q ss_pred eEEecCCCCHHHH-HHHHHHHHHH----HHHHHHHHhchhhhhhhc
Q psy17699 89 THIVNQPLTQEEI-EKLKKSAQAI----SQDYMYFLTTYIPKIFQL 129 (149)
Q Consensus 89 e~vl~l~Ls~eEq-e~L~~Sa~~I----k~~i~~~~~~~~~~~~~~ 129 (149)
++.+.-+ |++|. +.|++-.+.+ +..-+.+.+.|.|+|.++
T Consensus 16 e~~l~~n-t~~~I~~~l~~~C~~lp~~~~~~C~~~V~~y~~~iI~~ 60 (77)
T 1of9_A 16 ENLLTTK-GADKVKDYISSLCNKASGFIATLCTKVLDFGIDKLIQL 60 (77)
T ss_dssp HHHCSSS-CSHHHHHHHHHHHTTCSSTTHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 3445556 77776 7788777655 788899999999999875
No 93
>1jf3_A Monomer hemoglobin component III; oxygen storage/transport complex; HET: HEM; 1.40A {Glycera dibranchiata} SCOP: a.1.1.2 PDB: 1jl7_A* 1jf4_A* 1jl6_A* 1vre_A* 1vrf_A* 1hbg_A* 2hbg_A*
Probab=29.86 E-value=41 Score=23.59 Aligned_cols=33 Identities=9% Similarity=0.051 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHHHH--HHHHHHhchhhhhh
Q psy17699 95 PLTQEEIEKLKKSAQAISQ--DYMYFLTTYIPKIF 127 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~--~i~~~~~~~~~~~~ 127 (149)
.||++|++.++.|...+.. ....+-..+..++|
T Consensus 1 ~lt~~~~~~v~~sw~~v~~~~~~~~~g~~~y~rlf 35 (147)
T 1jf3_A 1 GLSAAQRQVVASTWKDIAGADNGAGVGKECLSKFI 35 (147)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4899999999999999975 44443333333333
No 94
>1hlm_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.90A {Caudina arenicola} SCOP: a.1.1.2
Probab=29.61 E-value=27 Score=24.94 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
..||++|++.++.|...++.....+-.....++|
T Consensus 11 ~~lt~~~~~~i~~sw~~v~~~~~~~g~~~y~rlf 44 (159)
T 1hlm_A 11 GDLTPAEKDLIRSTWDQLMTHRTGFVADVFIRIF 44 (159)
T ss_dssp CCSCHHHHHHHHHHHHHHTSCTHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Confidence 4799999999999999987554444444444444
No 95
>2c0k_A Hemoglobin; oxygen transport, heme, iron, metal-binding; HET: HEM; 2.6A {Gasterophilus intestinalis}
Probab=29.55 E-value=47 Score=23.62 Aligned_cols=22 Identities=14% Similarity=0.374 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
||++|++.+++|...++.....
T Consensus 1 Lt~~~~~~V~~sw~~v~~~~~~ 22 (151)
T 2c0k_A 1 MNSEEVNDIKRTWEVVAAKMTE 22 (151)
T ss_dssp CCHHHHHHHHHHHHHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHHhhHHH
Confidence 7999999999999999665443
No 96
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=29.20 E-value=65 Score=22.08 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
-.|+++|++.|.+..+.+.++++++.+
T Consensus 122 ~~l~~~e~~~l~~~l~~l~~~l~~~~~ 148 (149)
T 4hbl_A 122 QEFDTTEYDETKYVFEELEQTLKHLIE 148 (149)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 379999999999999999988877653
No 97
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=28.88 E-value=48 Score=23.51 Aligned_cols=27 Identities=19% Similarity=-0.005 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTT 121 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~ 121 (149)
.||++|++.+++|...++...+.+-..
T Consensus 2 ~lt~~~~~~V~~sw~~v~~~~~~~g~~ 28 (143)
T 1out_A 2 SLTAKDKSVVKAFWGKISGKADVVGAE 28 (143)
T ss_dssp CCCHHHHHHHHHHHHHHGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 489999999999999986654443333
No 98
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=28.45 E-value=1.3e+02 Score=19.93 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=30.7
Q ss_pred ceEEEeeEEEcCCceeEEe------cCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17699 74 EVFLSLPCVMADNGVTHIV------NQPLTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 74 dV~lSvP~vIGr~GVe~vl------~l~Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
.-++++|.+.+. .+.-++ +-.+++++.+.|+.-++.+--.++.
T Consensus 118 ~s~l~vPl~~~~-~~iGvl~~~~~~~~~f~~~~~~~l~~la~~~a~al~~ 166 (181)
T 3e0y_A 118 NSMLSFPIGDKK-EVYGVINLNTTSIRSFHEDEIYFVSIIANLILTAIKL 166 (181)
T ss_dssp EEEEEEEEECSS-CEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEeCC-eEEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 468999988763 333333 2378999999999988877766653
No 99
>3bom_A Hemoglobin subunit alpha-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_A*
Probab=28.31 E-value=50 Score=23.30 Aligned_cols=23 Identities=13% Similarity=0.013 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
.||++|++.+++|...++.....
T Consensus 2 ~lt~~~~~~v~~sw~~v~~~~~~ 24 (143)
T 3bom_A 2 SLSAKDKANVKAIWGKILPKSDE 24 (143)
T ss_dssp CCCHHHHHHHHHHHHHHGGGHHH
T ss_pred CCCHHHHHHHHHHHHHHHccHHH
Confidence 48999999999999999655443
No 100
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.24 E-value=27 Score=22.11 Aligned_cols=34 Identities=12% Similarity=0.356 Sum_probs=25.0
Q ss_pred EecCCCCHHHHHHHHHHHHHHHHHHHHHHhchhh
Q psy17699 91 IVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIP 124 (149)
Q Consensus 91 vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~ 124 (149)
....+.|++|.++|.+....-=+....+.++++|
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~ 40 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLP 40 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCT
T ss_pred cCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcC
Confidence 4456899999999999887665666666665554
No 101
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=28.20 E-value=51 Score=21.78 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYIP 124 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~ 124 (149)
.|+++|++.+.+-|+..++.+..-...|-.
T Consensus 48 ~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~ 77 (92)
T 2crj_A 48 KLQPAEKQRYLDEAEKEKQQYLKELWAYQQ 77 (92)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 799999999999999999998888777754
No 102
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2, protein structure initiative; 2.18A {Encephalitozoon cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Probab=28.09 E-value=45 Score=27.98 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=42.9
Q ss_pred hhhcCCCCCeEEEeeeec-cCcCCCccceEEEeeEEEcCCceeEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 48 VPLLDFDSNVESCEKSKS-EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 48 aIL~D~de~~IlpvS~~l-~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
.|+.|+ -..+|++-.. +|.|-.. . .-|+--.+. .-.+|++|.++++++++...+.++.+.+.+-|-
T Consensus 5 ~~~~~~--~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~-~~~~s~~EI~~mR~A~~I~~~a~~~~~~~ikpG 71 (360)
T 2nw5_A 5 CILLNQ--AEELPIEFLPKDGVYGKG-K--------LFDSRNMEI-ENFTESDILQDARRAAEAHRRARYRVQSIVRPG 71 (360)
T ss_dssp CCSSCC--CCCCCCCCCCTTCCCCCC-C--------EECTTSCEE-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred EEeecC--CCCCcHHHhCCCCCCCcc-e--------ecccHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 456665 4567777544 5778654 3 112222222 235699999999999999998888877666553
No 103
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=27.78 E-value=1.5e+02 Score=21.82 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=29.9
Q ss_pred ceEEEeeEEEcCC--ceeEEe---cCCCCHHHHHHHHHHHHHHHHHH
Q psy17699 74 EVFLSLPCVMADN--GVTHIV---NQPLTQEEIEKLKKSAQAISQDY 115 (149)
Q Consensus 74 dV~lSvP~vIGr~--GVe~vl---~l~Ls~eEqe~L~~Sa~~Ik~~i 115 (149)
.-.+++|.+.+.+ ||-.+- +-.+++++++.|+.-|+.|-+.+
T Consensus 113 ~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~la~~~ 159 (160)
T 3ksh_A 113 KSEIVVPIFKDDKIIGVLDIDAPITDRFDDNDKEHLEAIVKIIEKQL 159 (160)
T ss_dssp SEEEEEEEEETTEEEEEEEEEESSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4678999998653 443332 22689999999999888876654
No 104
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=27.48 E-value=67 Score=20.79 Aligned_cols=28 Identities=21% Similarity=0.071 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
.||++|.+.+.+-|+..++.+..-...|
T Consensus 45 ~ls~eeK~~y~~~A~~~k~~y~~~~~~Y 72 (85)
T 1j46_A 45 MLTEAEKWPFFQEAQKLQAMHREKYPNY 72 (85)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 7999999999999999999887765554
No 105
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: d.127.1.1
Probab=27.42 E-value=53 Score=25.55 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=27.4
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHHHhchhh
Q psy17699 92 VNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIP 124 (149)
Q Consensus 92 l~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~ 124 (149)
...--|++|.++++++++...+.++.+.+.+-|
T Consensus 13 ~R~iKs~~Ei~~~r~A~~i~~~~~~~~~~~i~p 45 (262)
T 1o0x_A 13 MIRIKTPSEIEKMKKAGKAVAVALREVRKVIVP 45 (262)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHGGGGCST
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 455679999999999999999888887776655
No 106
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=27.37 E-value=69 Score=20.71 Aligned_cols=29 Identities=24% Similarity=0.183 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYI 123 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~ 123 (149)
.||++|.+.+.+-|+..++.+..-...|-
T Consensus 43 ~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk 71 (86)
T 2lef_A 43 ALSREEQAKYYELARKERQLHMQLYPGWS 71 (86)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 79999999999999999999887766664
No 107
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor, antibacterial, hydrolase; HET: U12; 1.00A {Escherichia coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A* 2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A* 2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A* 3mat_A* 1yvm_A* 2mat_A ...
Probab=27.32 E-value=63 Score=24.95 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYIP 124 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~ 124 (149)
--|++|.++++++++...+.++.+.+.+-|
T Consensus 4 iKs~~Ei~~~r~A~~i~~~~~~~~~~~i~~ 33 (263)
T 2gg2_A 4 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKP 33 (263)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHGGGCST
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 358999999999999998888887776655
No 108
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB: 1v5h_A* 3ag0_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Probab=27.21 E-value=58 Score=24.40 Aligned_cols=34 Identities=9% Similarity=0.124 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
+.||++|++.+++|...++.....+-..+.-++|
T Consensus 20 ~~Ls~~e~~~V~~sW~~v~~~~~~~g~~~y~rlF 53 (193)
T 2dc3_A 20 EELSEAERKAVQAMWARLYANCEDVGVAILVRFF 53 (193)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 5799999999999999997665554444444444
No 109
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=26.99 E-value=65 Score=20.29 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
.|+++|++.+.+-|+..++.+..-...|
T Consensus 43 ~ls~~eK~~y~~~A~~~k~~y~~~~p~Y 70 (79)
T 3u2b_C 43 LLKDSDKIPFIQEAERLRLKHMADYPDY 70 (79)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 6899999999999999998877665544
No 110
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.93 E-value=1.1e+02 Score=18.70 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
-++++|.++|+.-...+.+.+..+..
T Consensus 16 gfspeelaaleselqalekklaalks 41 (48)
T 1g6u_A 16 GFSPEELAALESELQALEKKLAALKS 41 (48)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899988888777776666555443
No 111
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=26.87 E-value=49 Score=22.84 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
.+||+.++++|..+.+.||+++-.
T Consensus 24 ~~Ls~~d~arL~SCLd~iR~VlGd 47 (83)
T 1ufz_A 24 HQLSEIDQARLYSCLDHMREVLGD 47 (83)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCCHHHHHHHHHHHHHHHHHHcc
Confidence 469999999999999999987543
No 112
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=26.77 E-value=40 Score=20.76 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
.|+++|++.+.+-|+..++.+..-
T Consensus 43 ~ls~~eK~~y~~~A~~~k~~y~~~ 66 (71)
T 4a3n_A 43 ALTLAEKRPFVEEAERLRVQHMQD 66 (71)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999888876643
No 113
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=26.75 E-value=34 Score=21.23 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
.||++|++.+.+-|+..++.+..-.+.|
T Consensus 44 ~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 44 TMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp TCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6899999999999999888877655543
No 114
>2oif_A Horvu GLB1, non-legume hemoglobin; hexacoordinate hemoglobin, barley, ligand binding, non- symbiotic, symbiotic, evolution; HET: HEM; 1.80A {Hordeum vulgare} PDB: 2r50_A* 1d8u_A* 2gnv_A* 2gnw_A* 3qqq_A* 3qqr_A*
Probab=26.72 E-value=27 Score=24.89 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
+.||++|++.+++|-..++.....+-..+..++|
T Consensus 8 ~~lt~~~~~~v~~sw~~v~~~~~~~~~~fy~rlf 41 (162)
T 2oif_A 8 VVFSEEKEALVLKSWAIMKKDSANLGLRFFLKIF 41 (162)
T ss_dssp -CCCC-CHHHHHHHHHHHGGGHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4699999999999999997766665555555555
No 115
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=26.71 E-value=68 Score=21.92 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
.|+++|++.+.+-|+..++.+..-...|
T Consensus 70 ~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y 97 (106)
T 4euw_A 70 LLNESEKRPFVEEAERLRVQHKKDHPDY 97 (106)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7999999999999999999888766555
No 116
>1a6m_A Myoglobin; heme protein, model compounds, oxygen storage, ligand binding geometry, conformational substates, oxygen transpor; HET: HEM; 1.00A {Physeter catodon} SCOP: a.1.1.2 PDB: 1a6k_A* 1a6n_A* 2jho_A* 1ufp_A* 2eb9_A* 2eb8_A* 2w6w_A* 2ekt_A* 105m_A* 104m_A* 1ajh_A* 1ajg_A* 1bvc_A* 1bvd_A* 1bz6_A* 1bzr_A* 1cq2_A* 1duk_A* 1ebc_A* 1hjt_A* ...
Probab=26.61 E-value=52 Score=23.44 Aligned_cols=27 Identities=11% Similarity=-0.001 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
||++|++.++.|-..++.....+-...
T Consensus 2 lt~~~~~~v~~sw~~v~~~~~~~g~~~ 28 (151)
T 1a6m_A 2 LSEGEWQLVLHVWAKVEADVAGHGQDI 28 (151)
T ss_dssp CCHHHHHHHHHHHHHHGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 899999999999999966544433333
No 117
>3d1k_A Hemoglobin subunit alpha-1; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 2aa1_A* 1t1n_A* 1la6_A* 3nfe_A* 3ng6_A* 2h8f_A* 1pbx_A* 1s5x_A* 1s5y_A* 1hbh_A* 2h8d_A* 2peg_A* 3gkv_A* 3gqg_A* 1v4x_A* 1v4u_A* 1v4w_A*
Probab=26.26 E-value=54 Score=23.04 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
||++|++.+++|...++.....
T Consensus 2 ls~~~~~~v~~sw~~v~~~~~~ 23 (142)
T 3d1k_A 2 LSDKDKAAVRALWSKIGKSSDA 23 (142)
T ss_dssp CCHHHHHHHHHHHHHHGGGHHH
T ss_pred CCHHHHHHHHHHHHHHHcCHHH
Confidence 8999999999999998655443
No 118
>4hrt_A Globin-2 A chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_A*
Probab=26.24 E-value=42 Score=23.99 Aligned_cols=27 Identities=15% Similarity=-0.045 Sum_probs=21.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 93 NQPLTQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 93 ~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
++.||++|++.++.|...++.....+-
T Consensus 8 ~~~ls~~~~~~V~~sw~~v~~~~~~~g 34 (150)
T 4hrt_A 8 KVCGSEAIKANLRRSWGVLSADIEATG 34 (150)
T ss_dssp HHHTCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHhCHHHHH
Confidence 357999999999999999965544433
No 119
>1lhs_A Myoglobin; oxygen storage; HET: HEM; 2.00A {Caretta caretta} SCOP: a.1.1.2 PDB: 1lht_A*
Probab=26.22 E-value=57 Score=23.28 Aligned_cols=27 Identities=11% Similarity=0.040 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTT 121 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~ 121 (149)
.||++|++.++.|-..++.....+-..
T Consensus 1 glt~~~~~~V~~sw~~v~~~~~~~g~~ 27 (153)
T 1lhs_A 1 GLSDDEWNHVLGIWAKVEPDLSAHGQE 27 (153)
T ss_dssp CCCHHHHHHHHHHHHHHGGGHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 489999999999999986554443333
No 120
>4fuk_A Methionine aminopeptidase; structural genomics consortium, SGC, hydrolase; 1.75A {Trypanosoma brucei brucei}
Probab=26.10 E-value=41 Score=27.47 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q psy17699 97 TQEEIEKLKKSAQAISQDYMYFLTTYIPKI 126 (149)
Q Consensus 97 s~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~ 126 (149)
|++|.++++++++...+.++.+.+.+-|-+
T Consensus 65 s~~EI~~mR~A~~i~~~a~~~~~~~ikpG~ 94 (337)
T 4fuk_A 65 KTAEIQRIKTVCQLSREVLDIATAAAKPGI 94 (337)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 799999999999999999999888877743
No 121
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=26.06 E-value=71 Score=20.36 Aligned_cols=28 Identities=21% Similarity=0.193 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
.|+++|.+.+.+-|+..++.+..-...|
T Consensus 47 ~ls~~eK~~y~~~A~~~k~~y~~~~~~Y 74 (83)
T 3f27_D 47 ALTLAEKRPFVEEAERLRVQHMQDHPNY 74 (83)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 5899999999999999999887765554
No 122
>3fh3_A Putative ECF-type sigma factor negative effector; putative anti-sigma W factor, MCSG, PSI, structural genomics; HET: MSE; 2.10A {Bacillus anthracis str} PDB: 3fgg_A
Probab=25.96 E-value=74 Score=24.40 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=27.2
Q ss_pred cCCceeEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17699 84 ADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTT 121 (149)
Q Consensus 84 Gr~GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~ 121 (149)
..||. +=+=.||++||+++++-...|.=..+++..+
T Consensus 60 D~NG~--~~~ErLs~~eqekl~~i~~eL~PyfDKL~~~ 95 (158)
T 3fh3_A 60 DSNGN--IDYDALSSEKREEMKKVSMGLQPYFDKLNGH 95 (158)
T ss_dssp CTTSC--BCGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCC--CChHHCCHHHHHHHHHHHHHhccHHHHHcCC
Confidence 34666 2233899999999999999988877776653
No 123
>3mkb_A Hemoglobin subunit alpha; oxygen affinity, shortfin MAK storage, oxygen transport; HET: HEM; 1.90A {Isurus oxyrinchus} SCOP: a.1.1.2 PDB: 1gcv_A* 1gcw_A*
Probab=25.81 E-value=74 Score=22.72 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
.||++|++..+++...++...+.+=....-++|
T Consensus 1 ~Ls~~~~~~V~~~w~~v~~~~~~~g~~~~~rlF 33 (140)
T 3mkb_A 1 AFTGVERSTIGAIAKILASTPEAYGAEALARLF 33 (140)
T ss_dssp CCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 389999999999999998776665444443443
No 124
>1spg_A Hemoglobin; carbon monoxide, R-state, teleost FISH effect, oxygen transport; HET: HEM; 1.95A {Leiostomus xanthurus} SCOP: a.1.1.2
Probab=25.36 E-value=46 Score=23.66 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
.||++|++.+++|...++...+.
T Consensus 2 ~lt~~~~~~V~~sw~~v~~~~~~ 24 (144)
T 1spg_A 2 SLSATDKARVKALWDKIEGKSAE 24 (144)
T ss_dssp CCCHHHHHHHHHHHHHHSSTHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCHHH
Confidence 48999999999999988554443
No 125
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=25.30 E-value=63 Score=22.26 Aligned_cols=32 Identities=16% Similarity=0.024 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYIPKI 126 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~ 126 (149)
.|+++|.+.+.+-|+..++-+++-.+.|.++-
T Consensus 44 ~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~ 75 (91)
T 1l8y_A 44 NMEKKEKLMWIKKAAEDQKRYERELSEMRAPP 75 (91)
T ss_dssp TTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGG
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 68999999999999999999999999998864
No 126
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=25.03 E-value=1.4e+02 Score=19.13 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=31.3
Q ss_pred ceEEEeeEEEcCCceeEEe------c-CCCCHHHHHHHHHHHHHHHHHHHHH
Q psy17699 74 EVFLSLPCVMADNGVTHIV------N-QPLTQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 74 dV~lSvP~vIGr~GVe~vl------~-l~Ls~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
.-++++|.+.+ +.+.-++ + -.++++|.+.|+.-+..+--.++..
T Consensus 96 ~s~l~vPl~~~-~~~~Gvl~l~~~~~~~~f~~~~~~~l~~la~~~a~ai~~a 146 (153)
T 2w3g_A 96 RTFLGVPVRVR-DESFGTLYLTDKTNGQPFSDDDEVLVQALAAAAGIAVANA 146 (153)
T ss_dssp CCEEEEEEEET-TEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEeeEEEC-CEEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999864 3333333 2 3799999999999888877766543
No 127
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=25.01 E-value=39 Score=22.15 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=37.5
Q ss_pred CeEEEeeeeccCcCCCccceEEEeeEEE-cCCceeEE--ecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17699 56 NVESCEKSKSEGHHGIEEEVFLSLPCVM-ADNGVTHI--VNQPLTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 56 ~~IlpvS~~l~G~YGi~~dV~lSvP~vI-Gr~GVe~v--l~l~Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
++-++|+.+ +| .+++.+---- .++|-... --+.||+++.++|.+.+..|.+.+.+
T Consensus 8 ~rrvtv~~f-kG------~~~VdIRe~Y~~kdG~~~PgkKGIsL~~~qw~~l~~~~~~I~~ai~~ 65 (66)
T 1pcf_A 8 MRYVSVRDF-KG------KVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRK 65 (66)
T ss_dssp TEEEEEEEE-TT------EEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEe-CC------CEEEEEEEEEECCCCcCCCCccccccCHHHHHHHHHHHHHHHHHHHh
Confidence 466677665 33 4566666665 55653221 13579999999999999998887764
No 128
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=24.99 E-value=57 Score=21.18 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 99 EEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 99 eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
+-+++.-..++.|++.++.+++.|.+.
T Consensus 31 ~rke~Iv~eCnavrqALQdLlsEY~~~ 57 (59)
T 4e18_B 31 DRRERIVAECNAVRQALQDLLSEYMGN 57 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345778888999999999999999874
No 129
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens}
Probab=24.79 E-value=52 Score=28.17 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHH-HHHHhchhhhhhhccceeeccee
Q psy17699 95 PLTQEEIEKLKKSAQAISQDY-MYFLTTYIPKIFQLGQVQYSSCR 138 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i-~~~~~~~~~~~~~~~~~~~~~~~ 138 (149)
.++.+|.+.|.+-+..--+.+ +.--.+|+||+|.+=+++...-.
T Consensus 124 ti~~~E~~~l~~~lp~Y~~~~~~~~~~TLL~k~~Gly~v~~~~~~ 168 (392)
T 2gk9_A 124 EVSSEDIADMHSNLSNYHQYIVKCHGNTLLPQFLGMYRVSVDNED 168 (392)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTTSCSSSCCEEEEEECCBSSCC
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhhCCCcchhhhceEEEEEECCeE
Confidence 578999999987554444444 22457999999999888765433
No 130
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex; HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB: 3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A* 1y1n_A 1yj3_A 3ror_A
Probab=24.78 E-value=73 Score=25.21 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=27.4
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 92 VNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 92 l~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
+..--|++|.++++++++...+.++.+.+.+-|.
T Consensus 38 ~R~iKs~~EI~~~r~A~~i~~~a~~~~~~~i~pG 71 (285)
T 3pka_A 38 EPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPG 71 (285)
T ss_dssp SCSBCCHHHHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3445799999999999999988888877766553
No 131
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=24.78 E-value=1.6e+02 Score=20.66 Aligned_cols=54 Identities=19% Similarity=0.332 Sum_probs=31.9
Q ss_pred EEcCCceeEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhccceeecceeeEEEEee
Q psy17699 82 VMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQLGQVQYSSCRHIVIEMN 145 (149)
Q Consensus 82 vIGr~GVe~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (149)
+++++|..---..+++.++-++|-..+..+....+.+-+.+ ..| .+|+++||+.
T Consensus 24 lvs~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~~-----~~G-----~~~qv~ve~~ 77 (126)
T 3leq_A 24 VLSEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMDF-----RRG-----PVRQALIEMG 77 (126)
T ss_dssp EEETTSCEEEECTTSCHHHHHHHHHHHHHHHHC-----------------------CEEEEECS
T ss_pred EEcCCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHHh-----CCC-----CeEEEEEEeC
Confidence 78999976665667888888888887777777666655443 344 4577888764
No 132
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=24.70 E-value=61 Score=22.27 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=22.0
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 92 VNQPLTQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 92 l~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
-.+.|+++|.++|..-.+.|-+.++++.
T Consensus 16 ArL~l~eeE~~~~~~~l~~Il~~ve~L~ 43 (100)
T 3ip4_C 16 ARLQISPEETEEMANTLESILDFAKQND 43 (100)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999888888777766544
No 133
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=24.70 E-value=92 Score=21.56 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=20.7
Q ss_pred EeeEEEcCCceeEEecCCCCHHHHHHHHHHH
Q psy17699 78 SLPCVMADNGVTHIVNQPLTQEEIEKLKKSA 108 (149)
Q Consensus 78 SvP~vIGr~GVe~vl~l~Ls~eEqe~L~~Sa 108 (149)
+-|++|.++|-...+ -++.+|-+.|++..
T Consensus 31 ~epViITr~G~~~aV--l~s~e~ye~l~etl 59 (108)
T 3g5o_A 31 QDQITITKNGAPAAV--LVGADEWESLQETL 59 (108)
T ss_dssp SCEEEEEETTEEEEE--EEEHHHHHHHHHHH
T ss_pred CCcEEEEECCCCcEE--EecHHHHHHHHHHH
Confidence 569999998876654 35677777777754
No 134
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=24.60 E-value=54 Score=23.16 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q psy17699 96 LTQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
||++|++.+++|...++.....+
T Consensus 2 lt~~~~~~V~~sw~~v~~~~~~~ 24 (141)
T 2r80_A 2 LSANDKSNVKAVFAKIGGQAGDL 24 (141)
T ss_dssp CCHHHHHHHHHHHHHHTTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcHHHH
Confidence 89999999999999986655443
No 135
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=24.33 E-value=2.2e+02 Score=21.33 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=36.0
Q ss_pred ceEEEeeEEEcCCceeEEecC------CCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhhh
Q psy17699 74 EVFLSLPCVMADNGVTHIVNQ------PLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQ 128 (149)
Q Consensus 74 dV~lSvP~vIGr~GVe~vl~l------~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~~ 128 (149)
.-++++|.+.+ +.+.-++++ .+++++++.|+.-|..+-..++ .+...+.|+
T Consensus 125 ~S~l~VPI~~~-g~viGVL~i~s~~~~~F~e~d~~~L~~lA~~ia~ale---~a~~~~~~~ 181 (195)
T 1vhm_A 125 NSEIVLPLVVK-NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA---TTDYKKFFA 181 (195)
T ss_dssp SEEEEEEEEET-TEEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHHHH---TSSGGGTC-
T ss_pred cEEEEEeEeEC-CEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 57899999975 434444433 6899999999998888887775 334666654
No 136
>1xq5_A Hemoglobin alpha-1 chain; FISH hemoglobin, rapid oxidation, structural genomics, protein structure initiative, PSI, CESG; HET: HEM; 1.90A {Perca flavescens} SCOP: a.1.1.2 PDB: 3bj1_A* 3bj2_A* 3bj3_A* 3bcq_A*
Probab=24.19 E-value=50 Score=23.31 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYI 123 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~ 123 (149)
.||++|++.+++|...++.....+-....
T Consensus 2 ~lt~~~~~~V~~sw~~v~~~~~~~g~~~~ 30 (143)
T 1xq5_A 2 SLSSKDKDTVKALWGKIADKAEEIGSDAL 30 (143)
T ss_dssp CCCHHHHHHHHHHHHHTGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 48999999999999888665554333333
No 137
>1or4_A Heme-based aerotactic transducer hemat; globin fold, signaling protein; HET: HEM; 2.15A {Bacillus subtilis} SCOP: a.1.1.2 PDB: 1or6_A*
Probab=24.09 E-value=1.1e+02 Score=22.39 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=33.3
Q ss_pred eeEEec-CCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhhh
Q psy17699 88 VTHIVN-QPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQ 128 (149)
Q Consensus 88 Ve~vl~-l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~~ 128 (149)
+.+.+. +.||++..+.++.....+.+....+.+++-.++++
T Consensus 34 l~~~~~~~~lt~~d~~~l~~~~p~l~~~~~~ivd~FY~~l~~ 75 (178)
T 1or4_A 34 VKKQLKMVRLGDAELYVLEQLQPLIQENIVNIVDAFYKNLDH 75 (178)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344443 58999999999999999999999988888777664
No 138
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=24.09 E-value=64 Score=22.87 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
.|+++|++.|.+..+.+.++++++.
T Consensus 139 ~l~~~e~~~l~~~L~~l~~~l~~~~ 163 (166)
T 3deu_A 139 GISSEEIELLIKLIAKLEHNIMELH 163 (166)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888877777766543
No 139
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics center for infectious DI protease, hydrolase; 2.15A {Mycobacterium abscessus}
Probab=23.99 E-value=74 Score=25.13 Aligned_cols=32 Identities=6% Similarity=0.089 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
.--|++|.+.++++++...+.++.+.+.+-|.
T Consensus 33 ~iKs~~EI~~~r~A~~i~~~a~~~~~~~i~~G 64 (286)
T 3tav_A 33 EQRTPGELDAMAAAGSIVGAALVAVRDAAKAG 64 (286)
T ss_dssp CBCCHHHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 55799999999999998888888777666553
No 140
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.88 E-value=84 Score=21.43 Aligned_cols=23 Identities=26% Similarity=0.127 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
.|+++|.+.+.+-|+.+|+.+++
T Consensus 52 ~ls~eEK~pYe~~A~~~K~~y~k 74 (93)
T 2cto_A 52 LLREEEKEKYAEMAREWRAAQGK 74 (93)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999988765
No 141
>2bk9_A CG9734-PA; oxygen transport, drosophila melanogaster hemoglobin, heme hexacoordination, insect hemoglobin, protein cavities; HET: HEM CXS; 1.2A {Drosophila melanogaster} PDB: 2g3h_A*
Probab=23.76 E-value=63 Score=22.88 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy17699 96 LTQEEIEKLKKSAQAIS 112 (149)
Q Consensus 96 Ls~eEqe~L~~Sa~~Ik 112 (149)
||++|++.++.|...++
T Consensus 1 Lt~~~~~~V~~sw~~v~ 17 (153)
T 2bk9_A 1 MNSDEVQLIKKTWEIPV 17 (153)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 79999999999999987
No 142
>1bb1_A Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1 PDB: 1bb1_C 1u0i_B
Probab=23.54 E-value=1.1e+02 Score=17.54 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 98 QEEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 98 ~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
+-||+++++-+..|++.+..+ +.||..
T Consensus 8 eyeqaaikeeiaaikdkiaai-keyiaa 34 (36)
T 1bb1_A 8 EYEQAAIKEEIAAIKDKIAAI-KEYIAA 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 568888888888888888765 345543
No 143
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Probab=23.44 E-value=66 Score=27.55 Aligned_cols=44 Identities=11% Similarity=0.218 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHH-HHHHhchhhhhhhccceeeccee
Q psy17699 95 PLTQEEIEKLKKSAQAISQDY-MYFLTTYIPKIFQLGQVQYSSCR 138 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i-~~~~~~~~~~~~~~~~~~~~~~~ 138 (149)
.++.+|.+.|.+-+..--+.+ +.-..+|+||+|.+=+++...-.
T Consensus 135 ti~~~E~~~l~~~lp~Y~~~~~~~~~~TLL~k~~Gly~v~~~~~~ 179 (394)
T 2ybx_A 135 TITSEDVAEMHNILKKYHQYIVECHGITLLPQFLGMYRLNVDGVE 179 (394)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHTTTCCSSCCEEEEEEEEETTEE
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhcCCCcChhhhcEEEEEEECCeE
Confidence 578999999987554444444 22567999999999888765433
No 144
>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C*
Probab=23.38 E-value=50 Score=22.45 Aligned_cols=28 Identities=25% Similarity=0.188 Sum_probs=21.6
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy17699 92 VNQPLTQEEIEKLKKSAQAISQDYMYFL 119 (149)
Q Consensus 92 l~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~ 119 (149)
-.+.|+++|.++|.+-.+.|-+.++++.
T Consensus 14 ArL~l~eee~~~~~~~l~~Il~~ve~L~ 41 (94)
T 3h0l_C 14 ARLELKEEEIEVFQKQLSDILDFIDQLK 41 (94)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHTTTGG
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999888877777655543
No 145
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=23.08 E-value=52 Score=22.37 Aligned_cols=27 Identities=19% Similarity=0.044 Sum_probs=21.2
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy17699 92 VNQPLTQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 92 l~l~Ls~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
-.+.|+++|.++|.+-.+.|-+.++++
T Consensus 18 ArL~l~eeE~~~~~~~l~~Il~~ve~L 44 (92)
T 3kfu_G 18 AKIRLSPEEEALLLQDLKRILDFVDAL 44 (92)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999988887777766654
No 146
>4hrt_B Hemoglobin B chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_B*
Probab=22.79 E-value=44 Score=23.86 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=24.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 93 NQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 93 ~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
.+.||++|++.++.|...++.....+-.....++|
T Consensus 10 ~~~ls~~~~~~I~~sw~~v~~~~~~~g~~~y~rlF 44 (152)
T 4hrt_B 10 AVVSNADQKDLLRMSWGVLSVDMEGTGLMLMANLF 44 (152)
T ss_dssp HHHHCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 34689999999999999996655444444333333
No 147
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=22.55 E-value=1.8e+02 Score=19.54 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=30.2
Q ss_pred eEEEeeEEEcCCceeEEec------C-CCCHHHHHHHHHHHHHHHHHHHHH
Q psy17699 75 VFLSLPCVMADNGVTHIVN------Q-PLTQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 75 V~lSvP~vIGr~GVe~vl~------l-~Ls~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
-++++|.+.+ +.+.-++. - .+++++.+.|+.-+..+--.++..
T Consensus 128 s~l~vPl~~~-~~~iGvl~l~~~~~~~~f~~~d~~ll~~la~~~a~ai~na 177 (189)
T 2e4s_A 128 NILCMPIVSR-GSVIGVVQMVNKISGSAFSKTDENNFKMFAVFCALALHCA 177 (189)
T ss_dssp CEEEEEEEET-TEEEEEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeccC-CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999864 33433332 2 699999999999887776665543
No 148
>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regula METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori} SCOP: a.43.1.3
Probab=22.12 E-value=20 Score=22.85 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=27.5
Q ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q psy17699 90 HIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIF 127 (149)
Q Consensus 90 ~vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~~~ 127 (149)
+.+.+-||.||-+.|++-|+.=.+-.....+++|-|..
T Consensus 2 ~~Vs~Y~SkEey~~L~klA~eE~eSV~sfIKR~IlK~l 39 (55)
T 1x93_A 2 RAVSLYFSDEQYQKLEKMANEEEESVGSYIKRYILKAL 39 (55)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTSCTTHHHHHHHHHHH
T ss_pred ceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566799999999999987655555666666666544
No 149
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=21.40 E-value=1.2e+02 Score=17.14 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 98 QEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 98 ~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
+||...|+.-+..+++.++.+-++.
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888877654
No 150
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=21.28 E-value=1.1e+02 Score=20.24 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=18.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
-.|+++|++.|.+..+.+.+++++
T Consensus 113 ~~l~~~e~~~l~~~l~~~~~~l~~ 136 (138)
T 3bpv_A 113 RDFTEDERKLFRKMCRRLAEEAVR 136 (138)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHh
Confidence 378888888888888877777654
No 151
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab; HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A 2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Probab=21.26 E-value=91 Score=25.55 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhchhh
Q psy17699 94 QPLTQEEIEKLKKSAQAISQDYMYFLTTYIP 124 (149)
Q Consensus 94 l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~ 124 (149)
.--|++|.+.++++++.-.+.++.+.+.+-|
T Consensus 74 ~iKs~~EI~~mR~A~~ia~~al~~~~~~i~p 104 (329)
T 2b3h_A 74 KLLSSEDIEGMRLVCRLAREVLDVAAGMIKP 104 (329)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4579999999999999988888887776655
No 152
>1yhu_C Hemoglobin B1A chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=21.19 E-value=41 Score=23.90 Aligned_cols=21 Identities=0% Similarity=-0.083 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q psy17699 95 PLTQEEIEKLKKSAQAISQDY 115 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i 115 (149)
+||++|++.++.|-..++...
T Consensus 3 ~ls~~~~~~v~~sw~~v~~~~ 23 (148)
T 1yhu_C 3 NCADAAAAIVQAQWEDVWSAA 23 (148)
T ss_dssp CCCHHHHHHHHHHHHHHCCSS
T ss_pred CCCHHHHHHHHHHHHHHHhcc
Confidence 699999999999999984443
No 153
>1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B*
Probab=20.87 E-value=71 Score=22.44 Aligned_cols=20 Identities=15% Similarity=-0.175 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy17699 95 PLTQEEIEKLKKSAQAISQD 114 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~ 114 (149)
.+|++|++.+++|...++..
T Consensus 3 ~~s~~~~~~V~~sw~~v~~~ 22 (145)
T 1x9f_B 3 QCGVLEGLKVKSEWGRAYGS 22 (145)
T ss_dssp CCCHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHHcc
Confidence 48999999999999999655
No 154
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=20.85 E-value=93 Score=20.22 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
.|+++|++.+.+-|+.+++.+...
T Consensus 58 ~ls~eeK~~y~~~A~~~k~~~~~~ 81 (87)
T 2e6o_A 58 KMKNEERRMYTLEAKALAEEQKRL 81 (87)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999998877654
No 155
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=20.79 E-value=55 Score=20.60 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhch
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTY 122 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~ 122 (149)
.||++|++.+.+-|+..++.+..-...|
T Consensus 47 ~ls~~eK~~y~~~A~~~k~~y~~e~~~y 74 (77)
T 1hme_A 47 NTAADDKQPYEKKAAKLKEKYEKDIAAY 74 (77)
T ss_dssp HSCGGGSHHHHHHHHHHHHHHHHHHTTS
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999998888776655
No 156
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=20.75 E-value=38 Score=21.80 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLT 120 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~ 120 (149)
.|+++|++.+.+-|+..++.+..-..
T Consensus 48 ~ls~~eK~~y~~~A~~~k~~y~~~~~ 73 (82)
T 1wz6_A 48 VLDPKEKQKYTDMAKEYKDAFMKANP 73 (82)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHCCSCS
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHhH
Confidence 79999999999999998887654433
No 157
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.71 E-value=50 Score=22.23 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=17.7
Q ss_pred CCceeEEecCCCCHHHHHHHHH
Q psy17699 85 DNGVTHIVNQPLTQEEIEKLKK 106 (149)
Q Consensus 85 r~GVe~vl~l~Ls~eEqe~L~~ 106 (149)
+=||.+.-+-.|++||..+|..
T Consensus 39 kLGI~ktdP~~LT~eEi~~FaR 60 (71)
T 2eo2_A 39 KLGIHKTDPSTLTEEEVRKFAR 60 (71)
T ss_dssp HHTCCCCSTTTCCHHHHHHHHH
T ss_pred HcCCCCCCcccCCHHHHhhcee
Confidence 3478888777999999998854
No 158
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=20.70 E-value=94 Score=21.42 Aligned_cols=23 Identities=4% Similarity=0.154 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
.|+++|++.|.+..+.+.+++++
T Consensus 135 ~l~~~e~~~l~~~l~~l~~~l~~ 157 (159)
T 3s2w_A 135 SFDDRQRREITNSLEIMFENGLK 157 (159)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHh
Confidence 68888888888887777777654
No 159
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.53 E-value=85 Score=22.91 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhh
Q psy17699 95 PLTQEEIEKLKKSAQAISQDYMYFLTTYIP 124 (149)
Q Consensus 95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~ 124 (149)
.||++|.+.+.+-|+..++.+..-...|.|
T Consensus 58 ~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 87 (173)
T 2yrq_A 58 TMSAKEKGKFEDMAKADKARYEREMKTYIP 87 (173)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTHHHHHHCCC
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 699999999999999999999998888876
No 160
>3fm3_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2, protein structure initiative; 2.18A {Encephalitozoon cuniculi} PDB: 3fmq_A* 3fmr_A*
Probab=20.37 E-value=90 Score=25.86 Aligned_cols=35 Identities=9% Similarity=0.109 Sum_probs=28.3
Q ss_pred EecCCCCHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q psy17699 91 IVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPK 125 (149)
Q Consensus 91 vl~l~Ls~eEqe~L~~Sa~~Ik~~i~~~~~~~~~~ 125 (149)
.+....+++|.+++++++++.+++.+.+.+..-|-
T Consensus 35 ~~~~~~~~d~l~~~R~Aa~I~~~v~~~~~~~ikpG 69 (358)
T 3fm3_A 35 EIENFTESDILQDARRAAEAHRRARYRVQSIVRPG 69 (358)
T ss_dssp EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34566788999999999999999988877766663
No 161
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=20.36 E-value=2.5e+02 Score=21.57 Aligned_cols=44 Identities=7% Similarity=-0.016 Sum_probs=30.4
Q ss_pred ceEEEeeEEEcCCceeEEecC-------CCCHHHHHHHHHHHHHHHHHHHH
Q psy17699 74 EVFLSLPCVMADNGVTHIVNQ-------PLTQEEIEKLKKSAQAISQDYMY 117 (149)
Q Consensus 74 dV~lSvP~vIGr~GVe~vl~l-------~Ls~eEqe~L~~Sa~~Ik~~i~~ 117 (149)
..++++|.+.+++.+.-++.+ .++++|++.|+.-+..+--.++.
T Consensus 287 ~s~l~vPl~~~~~~~iGvl~l~~~~~~~~f~~~d~~ll~~la~~~a~ai~n 337 (368)
T 1mc0_A 287 RNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDLATAFSIYCGISIAH 337 (368)
T ss_dssp CCEEEEEEECTTSCEEEEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeeECCCCcEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 368999988863434333322 59999999999888776655553
No 162
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=20.31 E-value=1.4e+02 Score=17.21 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy17699 98 QEEIEKLKKSAQAISQDYMYF 118 (149)
Q Consensus 98 ~eEqe~L~~Sa~~Ik~~i~~~ 118 (149)
.+||+++++-+..|++.+..+
T Consensus 8 keeqaaieeeiqaikeeiaai 28 (36)
T 1bb1_B 8 KEEQAAIEEEIQAIKEEIAAI 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888877654
Done!