RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17699
(149 letters)
>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases. L-lactate
dehydrogenases (LDH) are tetrameric enzymes catalyzing
the last step of glycolysis in which pyruvate is
converted to L-lactate. This subgroup is composed of
eukaryotic LDHs. Vertebrate LDHs are non-allosteric.
This is in contrast to some bacterial LDHs that are
activated by an allosteric effector such as
fructose-1,6-bisphosphate. LDHs are part of the
NAD(P)-binding Rossmann fold superfamily, which includes
a wide variety of protein families including the
NAD(P)-binding domains of alcohol dehydrogenases,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 312
Score = 77.3 bits (191), Expect = 9e-18
Identities = 29/47 (61%), Positives = 40/47 (85%)
Query: 65 SEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G HGIE+EVFLSLPC++ +NG+TH++ QPLT+EE EKL+KSA +
Sbjct: 260 VKGLHGIEDEVFLSLPCILGENGITHVIKQPLTEEEQEKLQKSADTL 306
>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase.
Length = 350
Score = 65.6 bits (160), Expect = 2e-13
Identities = 25/48 (52%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 65 SEGHHGI-EEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
++G HGI E +VFLSLP + NGV +VN LT EE E+L+KSA+ +
Sbjct: 294 AKGFHGIDEGDVFLSLPAQLGRNGVLGVVNVHLTDEEAERLRKSAKTL 341
>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase. This model
represents the NAD-dependent L-lactate dehydrogenases
from bacteria and eukaryotes. This enzyme function as as
the final step in anaerobic glycolysis. Although lactate
dehydrogenases have in some cases been mistaken for
malate dehydrogenases due to the similarity of these two
substrates and the apparent ease with which evolution
can toggle these activities, critical residues have been
identified which can discriminate between the two
activities. At the time of the creation of this model no
hits above the trusted cutoff contained critical
residues typical of malate dehydrogenases [Energy
metabolism, Anaerobic, Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 299
Score = 53.0 bits (128), Expect = 5e-09
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +GI++ V++ +P V+ NGV I+ PL+ EE E +KSA+ +
Sbjct: 253 DGEYGIKD-VYIGVPAVLGRNGVEEIIELPLSDEEKEAFQKSAETL 297
>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like,
2-hydroxycarboxylate dehydrogenase family. Members of
this family include ubiquitous enzymes like L-lactate
dehydrogenases (LDH), L-2-hydroxyisocaproate
dehydrogenases, and some malate dehydrogenases (MDH).
LDH catalyzes the last step of glycolysis in which
pyruvate is converted to L-lactate. MDH is one of the
key enzymes in the citric acid cycle, facilitating both
the conversion of malate to oxaloacetate and
replenishing levels of oxalacetate by reductive
carboxylation of pyruvate. The LDH/MDH-like proteins are
part of the NAD(P)-binding Rossmann fold superfamily,
which includes a wide variety of protein families
including the NAD(P)-binding domains of alcohol
dehydrogenases, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 263
Score = 51.9 bits (125), Expect = 1e-08
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 65 SEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQD 114
+ G GI ++V +S+PC++ NGV + LT E+EKL+KSA + ++
Sbjct: 212 NNGQIGIPDDVVVSVPCIVGKNGVEEPIEVGLTDFELEKLQKSADTLKKE 261
>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases. L-lactate
dehydrogenases (LDH) are tetrameric enzymes catalyzing
the last step of glycolysis in which pyruvate is
converted to L-lactate. This subgroup is composed of
some bacterial LDHs from firmicutes,
gammaproteobacteria, and actinobacteria. Vertebrate LDHs
are non-allosteric, but some bacterial LDHs are
activated by an allosteric effector such as
fructose-1,6-bisphosphate. LDHs are part of the
NAD(P)-binding Rossmann fold superfamily, which includes
a wide variety of protein families including the
NAD(P)-binding domains of alcohol dehydrogenases,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenase, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 307
Score = 51.9 bits (125), Expect = 1e-08
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 65 SEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQ 113
G +G+ + V LSLP V+ G+ ++ PL + E+EKL KSA+AI +
Sbjct: 257 LSGEYGLSD-VALSLPTVIGAKGIERVLEIPLDEWELEKLHKSAKAIRE 304
>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases. L-lactate
dehydrogenases (LDH) are tetrameric enzymes catalyzing
the last step of glycolysis in which pyruvate is
converted to L-lactate. This subgroup is composed
predominantly of bacterial LDHs and a few fungal LDHs.
Bacterial LDHs may be non-allosteric or may be activated
by an allosteric effector such as
fructose-1,6-bisphosphate. LDHs are part of the
NAD(P)-binding Rossmann fold superfamily, which includes
a wide variety of protein families including the
NAD(P)-binding domains of alcohol dehydrogenases,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 308
Score = 51.7 bits (125), Expect = 1e-08
Identities = 19/48 (39%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQ 113
+G +GI++ V LSLPC++ +GV ++ PL++EE E L+ SA+ + +
Sbjct: 257 DGQYGIKD-VALSLPCIVGRSGVERVLPPPLSEEEEEALRASAEVLKE 303
>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes. Members
of this subfamily are tetrameric NAD-dependent
2-hydroxycarboxylate dehydrogenases including LDHs,
L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and
LDH-like malate dehydrogenases (MDH). Dehydrogenases
catalyze the conversion of carbonyl compounds to
alcohols or amino acids. LDHs catalyze the last step of
glycolysis in which pyruvate is converted to L-lactate.
Vertebrate LDHs are non-allosteric, but some bacterial
LDHs are activated by an allosteric effector such as
fructose-1,6-bisphosphate. L-HicDH catalyzes the
conversion of a variety of 2-oxo carboxylic acids with
medium-sized aliphatic or aromatic side chains. MDH is
one of the key enzymes in the citric acid cycle,
facilitating both the conversion of malate to
oxaloacetate and replenishing levels of oxalacetate by
reductive carboxylation of pyruvate. The LDH-like
subfamily is part of the NAD(P)-binding Rossmann fold
superfamily, which includes a wide variety of protein
families including the NAD(P)-binding domains of alcohol
dehydrogenases, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 300
Score = 50.7 bits (122), Expect = 3e-08
Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDY 115
EG +GIE+ V LS+P V+ GV I+ PLT++E KL+KSA+A+ +
Sbjct: 251 EGQYGIED-VALSVPAVVGREGVVRILEIPLTEDEEAKLQKSAEALKEVL 299
>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate
dehydrogenase proteins. Members of this subfamily have
an LDH-like structure and an MDH enzymatic activity.
Some members, like MJ0490 from Methanococcus jannaschii,
exhibit both MDH and LDH activities. Tetrameric MDHs,
including those from phototrophic bacteria, are more
similar to LDHs than to other MDHs. LDH catalyzes the
last step of glycolysis in which pyruvate is converted
to L-lactate. MDH is one of the key enzymes in the
citric acid cycle, facilitating both the conversion of
malate to oxaloacetate and replenishing levels of
oxalacetate by reductive carboxylation of pyruvate. The
LDH-like MDHs are part of the NAD(P)-binding Rossmann
fold superfamily, which includes a wide variety of
protein families including the NAD(P)-binding domains of
alcohol dehydrogenases, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate
dehydrogenases, formate/glycerate dehydrogenases,
siroheme synthases, 6-phosphogluconate dehydrogenases,
aminoacid dehydrogenases, repressor rex, and NAD-binding
potassium channel domains, among others.
Length = 300
Score = 50.2 bits (121), Expect = 4e-08
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIS 112
EG +GI++ +F+ +P V+ NGV I+ LT EE E KS +++
Sbjct: 251 EGEYGIKD-IFVGVPVVLGKNGVEKIIELDLTDEEKEAFDKSVESVK 296
>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and
some bacterial L-lactate dehydrogenases.
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes
the conversion of a variety of 2-oxo carboxylic acids
with medium-sized aliphatic or aromatic side chains.
This subfamily is composed of HicDHs and some bacterial
L-lactate dehydrogenases (LDH). LDHs catalyze the last
step of glycolysis in which pyruvate is converted to
L-lactate. Bacterial LDHs can be non-allosteric or may
be activated by an allosteric effector such as
fructose-1,6-bisphosphate. Members of this subfamily
with known structures such as the HicDH of Lactobacillus
confusus, the non-allosteric LDH of Lactobacillus
pentosus, and the allosteric LDH of Bacillus
stearothermophilus, show that they exist as
homotetramers. The HicDH-like subfamily is part of the
NAD(P)-binding Rossmann fold superfamily, which includes
a wide variety of protein families including the
NAD(P)-binding domains of alcohol dehydrogenases,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 306
Score = 45.2 bits (108), Expect = 3e-06
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +G E++V++ +P ++ NGV ++ LT+EE EK +KSA I
Sbjct: 256 DGEYG-EKDVYIGVPAIIGRNGVEEVIELDLTEEEQEKFEKSADII 300
>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and
conversion].
Length = 313
Score = 45.2 bits (108), Expect = 3e-06
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 65 SEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +G+E+ V+ +P V+ NGV I+ L+ +E EKL KSA+ +
Sbjct: 255 LDGEYGVED-VYFGVPAVLGKNGVEEILELLLSDDEQEKLDKSAEEL 300
>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed.
Length = 307
Score = 44.3 bits (106), Expect = 4e-06
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDY 115
EG +G+++ V++ +P + NGV I+ L EE KS +A+ +
Sbjct: 255 EGEYGVKD-VYVGVPVKLGKNGVEKIIELELDDEEKAAFDKSVEAVKKLI 303
>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed.
Length = 315
Score = 43.7 bits (104), Expect = 8e-06
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYM 116
EG +G EE+V++ +P V+ NG+ IV PL +E +K SA + ++ M
Sbjct: 262 EGQYG-EEDVYIGVPAVVNRNGIREIVELPLNDDEKQKFAHSADVL-KEIM 310
>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent.
This enzyme converts malate into oxaloacetate in the
citric acid cycle. The critical residues which
discriminate malate dehydrogenase from lactate
dehydrogenase have been characterized , and have been
used to set the cutoffs for this model. Sequences
showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd
were kept above trusted, while those in which the
capitalized residues in the patterns were found to be Q,
E and E were kept below the noise cutoff. Some sequences
in the grey zone have been annotated as malate
dehydrogenases, but none have been characterized.
Phylogenetically, a clade of sequences from eukaryotes
such as Toxoplasma and Plasmodium which include a
characterized lactate dehydrogenase and show abiguous
critical residue patterns appears to be more closely
related to these bacterial sequences than other
eukaryotic sequences. These are relatively long branch
and have been excluded from the model. All other
sequences falling below trusted appear to be
phylogenetically outside of the clade including the
trusted hits. The annotation of Botryococcus braunii as
lactate dehydrogenase appears top be in error. This was
initially annotated as MDH by Swiss-Prot and then
changed. The rationale for either of these annotations
is not traceable [Energy metabolism, TCA cycle].
Length = 305
Score = 43.3 bits (102), Expect = 1e-05
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +GI+ +++ +P ++ NGV HI L Q E+ L KSA+ +
Sbjct: 254 DGQYGIDG-IYVGVPVILGKNGVEHIYELKLDQSELALLNKSAKIV 298
>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta
C-terminal domain. L-lactate dehydrogenases are
metabolic enzymes which catalyze the conversion of
L-lactate to pyruvate, the last step in anaerobic
glycolysis. L-2-hydroxyisocaproate dehydrogenases are
also members of the family. Malate dehydrogenases
catalyze the interconversion of malate to oxaloacetate.
The enzyme participates in the citric acid cycle.
L-lactate dehydrogenase is also found as a lens
crystallin in bird and crocodile eyes.
Length = 173
Score = 36.9 bits (86), Expect = 0.001
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 65 SEGHHGIEEEVFLSLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAISQDY 115
+G++G ++++ S+P V+ +GV +V PL E EKL+KSA + ++
Sbjct: 115 LDGYYGSPDDIYFSVPVVLGKDGVEKVVEILPLNDFEREKLEKSAAELKKEI 166
>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional.
Length = 321
Score = 37.0 bits (86), Expect = 0.002
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIS 112
EG +G ++ +++ P V+ NGV I+ LT EE +K +S + +
Sbjct: 269 EGQYGHKD-IYMGTPAVIGANGVEKIIELDLTPEEQKKFDESIKEVK 314
>gnl|CDD|217952 pfam04189, Gcd10p, Gcd10p family. eIF-3 is a multi-subunit complex
that stimulates translation initiation in vitro at
several different steps. This family corresponds to the
gamma subunit if eIF3. The Yeast protein Gcd10p has also
been shown to be part of a complex with the
methyltransferase Gcd14p that is involved in modifying
tRNA.
Length = 299
Score = 34.2 bits (79), Expect = 0.016
Identities = 23/85 (27%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Query: 29 KFMLNTIEGPRGGLTHNIQVP--LLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADN 86
F N I G G T I L + ++ L + DN
Sbjct: 37 SFPANDIIGLPYGTTFEIDEDKELRVIGRVEVLLQLYPDSDETDSDDPETLEISESSRDN 96
Query: 87 GVTHIVN----QPLTQEEIEKLKKS 107
+IV+ Q LT EEIE LKK
Sbjct: 97 --RNIVDDGSSQKLTMEEIEALKKE 119
>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase. This model
represents a family of malate dehydrogenases in bacteria
and eukaryotes which utilize either NAD or NADP
depending on the species and context. MDH interconverts
malate and oxaloacetate and is a part of the citric acid
cycle as well as the C4 cycle in certain photosynthetic
organisms.
Length = 323
Score = 30.8 bits (70), Expect = 0.24
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 65 SEG-HHGIEEEVFLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQ 109
S+G +GI E + S P +G IV PL KL +
Sbjct: 268 SDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGLPLDDFVRGKLDATED 314
>gnl|CDD|219441 pfam07511, DUF1525, Protein of unknown function (DUF1525).
Length = 114
Score = 29.2 bits (66), Expect = 0.45
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 71 IEEEVFLSLPC--VMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTY 122
+E E+ LP A+ +N P Q ++L ++ Q ++ + +T
Sbjct: 31 LEAELSAGLPADPQQAEAQARQRLNSPDWQRLQQQLAQAYQGVADAWQLGITKI 84
>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate
dehydrogenases. MDH is one of the key enzymes in the
citric acid cycle, facilitating both the conversion of
malate to oxaloacetate and replenishing levels of
oxalacetate by reductive carboxylation of pyruvate.
Members of this subfamily are bacterial MDHs, and plant
MDHs localized to the choloroplasts. MDHs are part of
the NAD(P)-binding Rossmann fold superfamily, which
includes a wide variety of protein families including
the NAD(P)-binding domains of alcohol dehydrogenases,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 322
Score = 29.9 bits (68), Expect = 0.46
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 65 SEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQ 109
S+G +GI E + S P G + + EK+ +
Sbjct: 267 SDGSYGIPEGLIFSFPVRSKGGGYEIVEGLEIDDFAREKIDATLA 311
>gnl|CDD|237467 PRK13676, PRK13676, hypothetical protein; Provisional.
Length = 114
Score = 28.7 bits (65), Expect = 0.51
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 93 NQPLTQEEIEKLKKSAQAISQD 114
Q +T+EE +K ++ Q I Q+
Sbjct: 59 GQEITEEEQQKAQELGQKIQQN 80
>gnl|CDD|233300 TIGR01174, ftsA, cell division protein FtsA. This bacterial cell
division protein interacts with FtsZ, the bacterial
homolog of tubulin. It is an ATP-binding protein and
shows structural similarities to actin and heat shock
cognate protein 70 [Cellular processes, Cell division].
Length = 371
Score = 29.5 bits (67), Expect = 0.56
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 85 DNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQL 129
GV I ++ +TQE+IE++ ++A+A++ + IP+ + L
Sbjct: 85 SIGVVAIKDKEVTQEDIERVLETAKAVAIPNDQEILHVIPQEYIL 129
>gnl|CDD|235046 PRK02507, PRK02507, proton extrusion protein PcxA; Provisional.
Length = 422
Score = 29.5 bits (67), Expect = 0.58
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 93 NQPLTQEEIE-KLKKSAQAISQDYMYFLTTYIPKIF 127
PL+ EEIE KLK+ A+ ++++ Y I +F
Sbjct: 269 APPLSPEEIEEKLKEKAEELAEEARYESLNAIKNVF 304
>gnl|CDD|192933 pfam12076, Wax2_C, WAX2 C-terminal domain. This presumed domain is
functionally uncharacterized. This domain is found in
eukaryotes. This domain is about 170 amino acids in
length. This domain is found associated with pfam04116.
This domain has a conserved LEGW sequence motif. This
region has similarity to short chain dehydrogenases.
Length = 164
Score = 29.3 bits (66), Expect = 0.59
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 96 LTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQLG 130
L++EE EKLK A QD + T+Y K++ +G
Sbjct: 28 LSKEEYEKLKPEAPPEVQDNLVLSTSYTAKVWLVG 62
>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional.
Length = 319
Score = 28.9 bits (65), Expect = 1.1
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 67 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIS 112
G + + +F+ +P V+ G+ ++ L EE E KS ++I
Sbjct: 264 GQYNCKN-LFVGVPVVIGGKGIEKVIELELNAEEKELFDKSIESIQ 308
>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional.
Length = 326
Score = 28.6 bits (65), Expect = 1.1
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 65 SEGHHGIEEEVFLSLPCVMADNGVTHIV 92
S+G +GI E + P +NG IV
Sbjct: 269 SDGSYGIPEGLIFGFPVTC-ENGEYEIV 295
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional.
Length = 360
Score = 28.6 bits (64), Expect = 1.4
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 47 QVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKK 106
QVP++D SN+ES ++ E +E + A+ GV H+V + + +++++K
Sbjct: 47 QVPVVDL-SNIESDDEVVREA--CVEA---VRAAA--AEWGVMHLVGHGIPADLLDRVRK 98
Query: 107 SAQA 110
+ +A
Sbjct: 99 AGEA 102
>gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in
Kp43 proteases. Kp43 proteases are members of the
peptidase S8 or Subtilase clan of proteases. They have
an Asp/His/Ser catalytic triad similar to that found in
trypsin-like proteases, but do not share their
three-dimensional structure (an example of convergent
evolution). Kp43 is topologically similar to kexin and
furin both of which are proprotein convertases, but
differ in amino acids sequence and the position of its
C-terminal barrel. Kp43 has 3 Ca2+ binding sites that
differ from the corresponding sites in the other known
subtilisin-like proteases. KP-43 protease is known to
be an oxidation-resistant protease when compared with
the other subtilisin-like proteases.
Length = 293
Score = 28.4 bits (64), Expect = 1.5
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 18 ISVVFSAGNDIKFMLNTIEGP 38
I VFSAGND NTI P
Sbjct: 148 ILFVFSAGNDGNDGSNTIGSP 168
>gnl|CDD|226207 COG3682, COG3682, Predicted transcriptional regulator
[Transcription].
Length = 123
Score = 27.3 bits (61), Expect = 2.1
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 91 IVNQPLTQEEIEKLKKSAQAIS 112
+ LT +EIE LK I
Sbjct: 99 AEKEKLTADEIEALKAILDEIE 120
>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure
with malate dehydrogenase enzymatic activity. The
LDH-like MDH proteins have a lactate
dehyhydrogenase-like (LDH-like) structure and malate
dehydrogenase (MDH) enzymatic activity. This subgroup is
composed of some archaeal LDH-like MDHs that prefer
NADP(H) rather than NAD(H) as a cofactor. One member,
MJ0490 from Methanococcus jannaschii, has been observed
to form dimers and tetramers during crystalization,
although it is believed to exist primarilly as a
tetramer in solution. In addition to its MDH activity,
MJ0490 also possesses
fructose-1,6-bisphosphate-activated LDH activity.
Members of this subgroup have a higher sequence
similarity to LDHs than to other MDHs. LDH catalyzes the
last step of glycolysis in which pyruvate is converted
to L-lactate. MDH is one of the key enzymes in the
citric acid cycle, facilitating both the conversion of
malate to oxaloacetate and replenishing levels of
oxalacetate by reductive carboxylation of pyruvate. The
LDH-like MDHs are part of the NAD(P)-binding Rossmann
fold superfamily, which includes a wide variety of
protein families including the NAD(P)- binding domains
of alcohol dehydrogenases, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate
dehydrogenases, formate/glycerate dehydrogenases,
siroheme synthases, 6-phosphogluconate dehydrogenase,
aminoacid dehydrogenases, repressor rex, and NAD-binding
potassium channel domains, among others.
Length = 309
Score = 27.8 bits (62), Expect = 2.3
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 70 GIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
GI + V + +P + NG+ IV + +E E +KSA+ +
Sbjct: 262 GIRD-VCIGVPVKLGKNGIEEIVPIEMDDDEREAFRKSAEIV 302
>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase. This model
represents a family of protist lactate dehydrogenases
which have aparrently evolved from a recent protist
malate dehydrogenase ancestor. Lactate dehydrogenase
converts the hydroxyl at C-2 of lactate to a carbonyl in
the product, pyruvate. The preference of this enzyme for
NAD or NADP has not been determined. A critical residue
in malate dehydrogenase, arginine-91 (T. vaginalis
numbering) has been mutated to a leucine, eliminating
the positive charge which complemeted the carboxylate in
malate which is absent in lactate. Several other more
subtle changes are proposed to make the active site
smaller to accomadate the less bulky lactate molecule.
Length = 313
Score = 27.9 bits (62), Expect = 2.4
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 69 HGIEEEVFLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKS 107
+GI+ V S PC + ++G H+V N L KL ++
Sbjct: 258 YGIKPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQT 297
>gnl|CDD|129003 smart00764, Citrate_ly_lig, Citrate lyase ligase C-terminal domain.
Proteins of this family contain the C-terminal domain
of citrate lyase ligase EC:6.2.1.22.
Length = 182
Score = 27.2 bits (61), Expect = 2.7
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 9/34 (26%)
Query: 88 VTHIVNQPLTQE---------EIEKLKKSAQAIS 112
VT I NQ + Q EIE+ K + Q IS
Sbjct: 121 VTAIYNQTMKQTLLSPAIEVVEIERKKANGQPIS 154
>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit. This family
represents the eukaryotic vacuolar (H+)-ATPase
(V-ATPase) G subunit. V-ATPases generate an acidic
environment in several intracellular compartments.
Correspondingly, they are found as membrane-attached
proteins in several organelles. They are also found in
the plasma membranes of some specialised cells.
V-ATPases consist of peripheral (V1) and membrane
integral (V0) heteromultimeric complexes. The G subunit
is part of the V1 subunit, but is also thought to be
strongly attached to the V0 complex. It may be involved
in the coupling of ATP degradation to H+ translocation.
Length = 105
Score = 26.4 bits (59), Expect = 3.9
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 97 TQEEIEKLKKSAQAISQDYMYFLTTYIPKI 126
T+E+I++LK+S + + L + + +
Sbjct: 75 TEEKIDELKRSFNKNKEAVVQMLLSKVTDV 104
>gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and
chromosome partitioning].
Length = 418
Score = 26.8 bits (60), Expect = 5.7
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 52 DFDSNVESCEKSKS--EGHHGIE-EEVFLSLPC----VMADNGVTHIVN-QPLTQEEIEK 103
D D+ +S +K+ E G E + V +SL NG I + +TQE+IE+
Sbjct: 51 DLDAAAQSIKKAVEAAERMAGCEIKSVIVSLSGNHIKSQNVNGEVSISEEKEITQEDIER 110
Query: 104 LKKSAQAISQDYMYFLTTYIPKIFQL 129
+ ++A+A++ + IP+ + +
Sbjct: 111 VLEAAKAVAIPPEREILHVIPQEYIV 136
>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 26.5 bits (59), Expect = 6.0
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 21 VFSAGNDIKFML 32
FSAG DIK ML
Sbjct: 61 GFSAGGDIKMML 72
>gnl|CDD|182843 PRK10925, PRK10925, superoxide dismutase; Provisional.
Length = 206
Score = 26.4 bits (58), Expect = 6.1
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 3 FGSGGWWFEFKSSHKISVVFSAGNDIKFMLNTIEGPRG 40
FGSG W K K++VV +A D M I G G
Sbjct: 125 FGSGWAWLVLKGD-KLAVVSTANQDSPLMGEAISGASG 161
>gnl|CDD|217054 pfam02469, Fasciclin, Fasciclin domain. This extracellular domain
is found repeated four times in grasshopper fasciclin I
as well as in proteins from mammals, sea urchins,
plants, yeast and bacteria.
Length = 123
Score = 25.7 bits (57), Expect = 7.5
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 82 VMADNGVTHIVNQPL 96
+ A NGV H++++ L
Sbjct: 107 IEATNGVIHVIDKVL 121
>gnl|CDD|173920 cd02169, Citrate_lyase_ligase, Citrate lyase ligase. Citrate lyase
ligase, also known as [Citrate (pro-3S)-lyase] ligase,
is responsible for acetylation of the
(2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A)
prosthetic group of the gamma subunit of citrate lyase,
converting the inactive thiol form of this enzyme to the
active form. The acetylation of 1 molecule of
deacetyl-citrate lyase to enzymatically active citrate
lyase requires 6 molecules of ATP. The
Adenylylyltranferase activity of the enzyme involves the
formation of AMP and and pyrophosphate in the
acetylation reaction.
Length = 297
Score = 26.1 bits (58), Expect = 7.5
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 9/34 (26%)
Query: 88 VTHIVNQPLTQE---------EIEKLKKSAQAIS 112
VT I NQ + +E EIE+ K Q IS
Sbjct: 236 VTAIYNQTMQEELLSPAIEVIEIERKKYDGQPIS 269
>gnl|CDD|185432 PTZ00078, PTZ00078, Superoxide dismutase [Fe]; Provisional.
Length = 193
Score = 25.9 bits (57), Expect = 8.8
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 16/54 (29%)
Query: 3 FGSGGWWFEFKSSHKISVV--FSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFD 54
FGSG W K+ K+ +V AGN IK N PLL D
Sbjct: 114 FGSGWGWLVLKNDGKLEIVQTHDAGNPIKD--------------NTGKPLLTCD 153
>gnl|CDD|148431 pfam06819, Arc_PepC, Archaeal Peptidase A24 C-terminal Domain.
This region is of unknown function but is found in some
archaeal pfam01478. It is predicted to be of mixed
alpha/beta secondary structure by JPred.
Length = 111
Score = 25.4 bits (56), Expect = 9.2
Identities = 9/11 (81%), Positives = 11/11 (100%)
Query: 96 LTQEEIEKLKK 106
LT+E+IEKLKK
Sbjct: 88 LTEEQIEKLKK 98
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.406
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,371,415
Number of extensions: 635415
Number of successful extensions: 860
Number of sequences better than 10.0: 1
Number of HSP's gapped: 858
Number of HSP's successfully gapped: 50
Length of query: 149
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 61
Effective length of database: 7,034,450
Effective search space: 429101450
Effective search space used: 429101450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)