RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17699
(149 letters)
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 68.7 bits (169), Expect = 8e-15
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +GI+E+VFLS+PC++ NG++ +V LT +E +LKKSA +
Sbjct: 277 KGLYGIKEDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKSADTL 322
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 64.2 bits (157), Expect = 3e-13
Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEI-EKLKKSAQAI 111
+G++ I EVFLSLPC++ NGV+ ++ L ++ + EKL+ SA +I
Sbjct: 248 KGYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSI 294
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 61.4 bits (150), Expect = 3e-12
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
G+ E V LSLP ++ GV V L+ EE L++SA+ +
Sbjct: 257 PEVAGVLE-VSLSLPRILGAGGVAGTVYPSLSPEERAALRRSAEIL 301
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 61.4 bits (150), Expect = 4e-12
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+ HGI + + +S+P ++ GV + +N P++ +E+ LK+SA+ +
Sbjct: 266 KDFHGISD-ICMSVPTLLNRQGVNNTINTPVSDKELAALKRSAETL 310
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 61.4 bits (150), Expect = 4e-12
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
G +GIE+ V +SLP ++ GV ++ LT EE E L+ SA+ +
Sbjct: 264 NGMYGIED-VAISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQV 308
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 61.4 bits (150), Expect = 4e-12
Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +G + V++ +P V+ NG+ ++ L +E + SA +
Sbjct: 263 DGLYGERD-VYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATL 307
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 60.2 bits (147), Expect = 8e-12
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
E + G+++ + +S+P + +GV I+ L +EE+E +KSA +
Sbjct: 256 EDYLGVKD-LCISVPVTLGKHGVERILELNLNEEELEAFRKSASIL 300
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 60.2 bits (147), Expect = 9e-12
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
EG + E+ V++ +P V+ NG+ ++V PL EE K SA+ +
Sbjct: 262 EGEYEEED-VYIGVPAVINRNGIRNVVEIPLNDEEQSKFAHSAKTL 306
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 60.2 bits (147), Expect = 9e-12
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +G+ + +++ P V+ NG+ +I+ PLT E E ++KSA +
Sbjct: 265 DGQYGLND-IYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQL 309
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 60.2 bits (147), Expect = 9e-12
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +G ++ V++ +P V+ G+ I L ++E E+ SA +
Sbjct: 262 DGQYGADD-VYIGVPAVVNRGGIAGITELNLNEKEKEQFLHSAGVL 306
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 59.4 bits (145), Expect = 2e-11
Identities = 11/46 (23%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +G+ + +++ P ++ G+ I+ PL+ +E++K++ SA +
Sbjct: 260 DGQYGLND-IYIGTPAIIGGTGLKQIIESPLSADELKKMQDSAATL 304
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 59.6 bits (145), Expect = 2e-11
Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTH--IVNQPLTQEEIEKLKKSAQAI 111
+ +GI++ VFLSLPCV+ +NG++H IV L +E ++L+KSA +
Sbjct: 275 KDFYGIKDNVFLSLPCVL-NNGISHCNIVKMKLKPDEEQQLQKSATTL 321
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 58.3 bits (142), Expect = 4e-11
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQ 113
EG G E+ +P + NGV IV L E + + +A+ +S
Sbjct: 251 EGEFGHED-TAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKLSD 297
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 57.1 bits (139), Expect = 1e-10
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 72 EEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+ ++LS P ++ +GV LT +E EKL +S I
Sbjct: 259 DMGMYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSRDYI 298
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 55.6 bits (135), Expect = 4e-10
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 72 EEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
E V LSLP V+ GV ++ LT +E +KL++SA +
Sbjct: 256 EYGVSLSLPRVVGRQGVLSTLHPKLTGDEQQKLEQSAGVL 295
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 54.0 bits (131), Expect = 1e-09
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +GIE V + +P + NG + + L+ EEIEKL+ SA+ +
Sbjct: 242 QGEYGIEN-VAVGVPAKLGKNGA-EVADIKLSDEEIEKLRNSAKIL 285
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 53.3 bits (129), Expect = 2e-09
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
EG +GI++ F+ +P + NGV I L Q +++ L+KSA+ +
Sbjct: 254 EGQYGIDK-TFVGVPVKLGRNGVEQIYEINLDQADLDLLQKSAKIV 298
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 50.6 bits (122), Expect = 2e-08
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +G+++ +F+ +P + GV ++ L +E +LK SA +
Sbjct: 253 DGEYGLDD-LFIGVPVKLGAGGVEEVIEVDLDADEKAQLKTSAGHV 297
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 49.8 bits (120), Expect = 4e-08
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +G + + +P V+ +G+ I+ PLT++E K ++ QA+
Sbjct: 251 QGEYGYND-IVAEVPAVIGKSGIERIIELPLTEDEKRKFDEAVQAV 295
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 49.4 bits (119), Expect = 6e-08
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
G +G+ + ++ +P ++ GV I+ PL +EE+ L SA+A+
Sbjct: 255 TGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAV 299
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 49.0 bits (118), Expect = 6e-08
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
H+G++ +++ +P ++ NGV I+ LT E + L +S +
Sbjct: 262 SNHYGVKG-IYMGVPTIIGKNGVEDILELDLTPLEQKLLGESINEV 306
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 49.1 bits (118), Expect = 8e-08
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
G +G+++ +F+ LP V+ G+ ++ L +EE ++ +KS +
Sbjct: 273 NGEYGLKD-MFIGLPAVIGGAGIERVIELELNEEEKKQFQKSVDDV 317
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 48.7 bits (117), Expect = 9e-08
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
G +G+++ +++ +P V+ NGV I+ L ++E + KS ++
Sbjct: 265 SGQYGVKD-MYVGVPTVIGANGVERIIEIDLDKDEKAQFDKSVASV 309
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 48.7 bits (117), Expect = 9e-08
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G +V + +P + +G+ +V+ L ++EI +KSA+ I
Sbjct: 258 DGEFDGIRDVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEII 303
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 48.7 bits (117), Expect = 1e-07
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
EG +G + ++L +P ++ NG+ I+ L +E E L +S +++
Sbjct: 263 EGEYGYSD-LYLGVPVILGGNGIEKIIELELLADEKEALDRSVESV 307
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 47.9 bits (115), Expect = 2e-07
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
G + + +F+ +P V+ NG+ +V L+ +E KS ++I
Sbjct: 272 TGQYNVNN-LFVGVPVVIGKNGIEDVVIVNLSDDEKSLFSKSVESI 316
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 47.5 bits (114), Expect = 2e-07
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
EG +G + +F P V+ NGV ++ L EE K ++
Sbjct: 265 EGQYGHSD-IFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAET 309
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 47.1 bits (113), Expect = 3e-07
Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
G +G++E++F+ +P ++ NGV + ++ +E E+L+ S AI
Sbjct: 264 AGMYGLDEDLFVGVPTEISANGV-RPIEVEISDKEREQLQVSINAI 308
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 40.8 bits (96), Expect = 6e-05
Identities = 8/49 (16%), Positives = 18/49 (36%)
Query: 65 SEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQ 113
S+G +GI E V P + + + E++ + + +
Sbjct: 271 SDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLNELLE 319
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 40.1 bits (94), Expect = 9e-05
Identities = 10/50 (20%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 65 SEGHH-GIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQ 113
S+G+ G+ +++ S P + D + P+ EK+ +A+ +++
Sbjct: 272 SDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAE 321
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 36.5 bits (85), Expect = 0.002
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 65 SEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL-TQEEIEKLKKSAQAI 111
G I +++ + +GV H L + E LK+S +
Sbjct: 267 VPGFEHI----MMAMETTITKDGVKHSDINQLGNEAERAALKESYSHL 310
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 36.3 bits (84), Expect = 0.002
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 65 SEGHH-GIEEEVFLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAISQ 113
+ G+ GI E++ S+PC +G + + E++KKS +
Sbjct: 297 TTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLA 347
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 36.5 bits (85), Expect = 0.002
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 65 SEGHHGIEEEVFLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAISQ 113
S+G +GI E + S P A +G +V + + ++++ +AQ +
Sbjct: 268 SQGEYGIPEGIVYSFPVT-AKDGAYRVVEGLEINEFARKRMEITAQELLD 316
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 33.3 bits (77), Expect = 0.016
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 51 LDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQ 109
L + V C + +G + F S P ++ NGV + L+ E L+
Sbjct: 242 LQGEQGVVECAYVEGDGQYAR----FFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLD 297
Query: 110 AISQD 114
+ +D
Sbjct: 298 TLKKD 302
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS;
acetyltransferase, structural genomics, structural
genomics consortium, SGC, unknown function; 2.28A {Homo
sapiens} SCOP: c.14.1.3
Length = 291
Score = 33.0 bits (76), Expect = 0.021
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 21 VFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEK 62
VF G D + + + R + + + +F + +K
Sbjct: 79 VFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKK 120
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid
metabolism, STR genomics, structural genomics
consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Length = 280
Score = 32.6 bits (75), Expect = 0.033
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 21 VFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEK 62
+S+GND+ + G N V L +F K
Sbjct: 81 YYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPK 122
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics,
structural genomics consortium, SGC, unknown function;
1.90A {Homo sapiens} PDB: 2fw2_A
Length = 261
Score = 31.8 bits (73), Expect = 0.061
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 21 VFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEK 62
VF G D + + + R + + + +F + +K
Sbjct: 61 VFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKK 102
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.066
Identities = 16/119 (13%), Positives = 34/119 (28%), Gaps = 40/119 (33%)
Query: 51 LDFDSNVESCEKSKSEGHHGIEE--EVFLS-----LPC---------VMADNGVTHIVNQ 94
+DF++ E + ++ VF C +++ + HI+
Sbjct: 7 MDFETG---------EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS 57
Query: 95 PLTQEE----IEKLKKSAQAISQDYM-------Y-FLTTYI---PKIFQLGQVQYSSCR 138
L + + Q ++ Y FL + I + + Y R
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2;
2.00A {Acinetobacter baumannii}
Length = 266
Score = 30.2 bits (69), Expect = 0.19
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 22 FSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEK 62
F+AGND+K + ++ P G QVP + K
Sbjct: 62 FTAGNDMKDFMGFVQNPNAGPA--GQVPPFVLLKSAARLSK 100
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 29.9 bits (68), Expect = 0.30
Identities = 4/46 (8%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 70 GIEEEVFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAISQD 114
+ + S P ++ G+ + ++ E + + ++ +
Sbjct: 257 QETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKAS 302
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative
initiation, ATP-binding, DNA- binding, hydrolase,
nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB:
3ezk_A*
Length = 592
Score = 29.9 bits (66), Expect = 0.31
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 72 EEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKI 126
+ ++ LP + N + T+E +E+ KK D +YF TY I
Sbjct: 108 KRSRYMGLPNLKRAN-----IKTQWTREMVEEWKKCR----DDIVYFAETYC-AI 152
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold,
hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4}
PDB: 2o0h_A* 2o0k_A*
Length = 385
Score = 29.3 bits (64), Expect = 0.45
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 72 EEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYI 123
+ ++ LP + N + T+E +E+ KK D +YF TY
Sbjct: 108 KRSRYMGLPNLKRAN-----IKTQWTREMVEEWKK----CRDDIVYFAETYC 150
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
marinum}
Length = 256
Score = 29.0 bits (66), Expect = 0.52
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 22 FSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEK 62
FSAG D+ M I P L+ + K
Sbjct: 63 FSAGTDLAEMQARITDPNFSEGKFGFRGLIK---ALAGFPK 100
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.61
Identities = 5/27 (18%), Positives = 10/27 (37%), Gaps = 11/27 (40%)
Query: 98 QEEIEKLKKSAQAISQDYMYFLTTYIP 124
++ ++KL+ S L Y
Sbjct: 19 KQALKKLQAS-----------LKLYAD 34
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold,
inter-trimer contacts; 2.10A {Saccharomyces cerevisiae}
SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Length = 280
Score = 28.5 bits (64), Expect = 0.86
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 22 FSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNV 57
FS+G D K + + +F +
Sbjct: 66 FSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARN 101
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein,
lipid binding protein, acid ceramidase,farber disease,
lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C
2rb3_A 2r1q_A 2r0r_A
Length = 80
Score = 26.8 bits (59), Expect = 0.98
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 81 CVMADNGVTHIVNQPLTQEEIEKL-----KKSAQAISQDYMYFLTTYIPKIFQL 129
C + + + T++EI + F+ Y P + ++
Sbjct: 8 CKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEI 61
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv
T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A
{Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Length = 451
Score = 28.4 bits (63), Expect = 1.1
Identities = 15/126 (11%), Positives = 36/126 (28%), Gaps = 10/126 (7%)
Query: 2 NFGSGGWWFEFKSSHKISVVFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFD-----SN 56
NF GG H + + + R ++ ++ D
Sbjct: 142 NFIKGGLILTVNGQHGAMDMVGQDA---VIRLLSKACRNDPFTEEEMTAMNLDRKTIVPY 198
Query: 57 VESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYM 116
+E+ H ++ +V + + + + + +LK +A
Sbjct: 199 LENYTIGPEVDHQIVKADVAGGDAVLTPVSASWAFFT--FSPKAMSELKDAATKTLDAST 256
Query: 117 YFLTTY 122
F++T
Sbjct: 257 KFVSTD 262
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A
2q2x_A
Length = 243
Score = 27.1 bits (61), Expect = 2.1
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 9/42 (21%)
Query: 21 VFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEK 62
FS+G +F++ G +V +LD + CE
Sbjct: 59 YFSSGASKEFLIRKTRG---------EVEVLDLSGLILDCEI 91
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein,
galactosylcera lauryldimethylamine-N-oxide, lipid,
detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB:
2dob_A*
Length = 83
Score = 26.1 bits (57), Expect = 2.4
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 81 CVMADNGVTHIVNQPLTQEEIEK-LKKS-----AQAISQDYMYFLTTYIPKIFQLGQVQY 134
C ++ T+EEI L+K+ +S + +Y+P I + + +
Sbjct: 9 CKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDIIKGEM 68
Query: 135 SS----CRHI 140
S C +
Sbjct: 69 SRPGEVCSAL 78
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.09A {Mycobacterium abscessus}
Length = 256
Score = 26.7 bits (60), Expect = 3.0
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 11/47 (23%)
Query: 9 WFEFKSSHKISVV--------FSAGNDIKFM--LNTIEGPRG-GLTH 44
+ SS +SV F AG D+K + RG G T+
Sbjct: 43 ADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSERGLGFTN 89
>2o34_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, NEW YORK SGX research center for structural
genomics; HET: MSE; 1.95A {Desulfovibrio vulgaris} SCOP:
d.96.2.2
Length = 250
Score = 26.6 bits (58), Expect = 3.0
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 46 IQVPLLDFDSNVESCEKSKSEGH---HGIEEEV-FLSLPCVMADNGVTHIVNQPLTQEEI 101
+ + + + V C S GH G + + +AD T N +++
Sbjct: 154 VGILVRAGTAPVSLCGSSARIGHSLSLGDGDLAVVRARDASLADAAATAFGNMLRRADDV 213
Query: 102 EKLKKSAQAISQD 114
+ + A ++
Sbjct: 214 AAVTERAAQLASI 226
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative
splicing, disease mutation, gaucher disease,
glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens}
SCOP: a.64.1.1 PDB: 2z9a_A
Length = 91
Score = 25.8 bits (56), Expect = 3.1
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 81 CVMADNGVTHIVNQPLTQEEIEKL-----KKSAQAISQDYMYFLTTYIPKIFQLGQVQYS 135
C VT +++ T++EI K +++S++ + TY I + + S
Sbjct: 11 CEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLEEVS 70
Query: 136 S---CRHI 140
C +
Sbjct: 71 PELVCSML 78
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function;
NMR {Helicobacter pylori}
Length = 76
Score = 25.4 bits (56), Expect = 3.2
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 85 DNGVTHIVNQPLTQEEIEKLKK 106
D+ + Q + E+ +KK
Sbjct: 30 DDDIKTAEQQNASDAEVSHMKK 51
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance,
extracellular module, genetic disorder, corneal
dystrophy; HET: NAG; 2.6A {Drosophila melanogaster}
SCOP: b.118.1.1 b.118.1.1
Length = 324
Score = 26.5 bits (58), Expect = 3.4
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 82 VMADNGVTHIVNQPLT 97
V NG HI++ L
Sbjct: 140 VAQTNGYVHIIDHVLG 155
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP:
c.14.1.3 PDB: 2vre_A
Length = 275
Score = 26.4 bits (59), Expect = 3.8
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 22 FSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFD-------SNVESCEK 62
F++G D+ M + I P G I L D + +E C K
Sbjct: 61 FTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPK 108
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 26.3 bits (58), Expect = 4.3
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 21 VFSAGNDIKFM 31
VFSAG ++K++
Sbjct: 232 VFSAGINLKYL 242
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein,
lipid-binding prote binding protein; 2.40A {Homo
sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Length = 83
Score = 25.3 bits (55), Expect = 4.3
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 81 CVMADNGVTHIVNQPLTQEEIEKL-----KKSAQAISQDYMYFLTTYIPKIFQLGQVQYS 135
C VT +++ T++EI K +++S++ + TY I + + S
Sbjct: 10 CEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLEEVS 69
Query: 136 S---CRHI 140
C +
Sbjct: 70 PELVCSML 77
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 26.0 bits (58), Expect = 5.0
Identities = 6/42 (14%), Positives = 13/42 (30%)
Query: 21 VFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEK 62
FS+G ++ +L + L + + K
Sbjct: 61 YFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPK 102
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for
infectious DI enoyl-COA hydratase, lyase; 1.75A
{Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A
Length = 267
Score = 25.6 bits (57), Expect = 6.3
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 22 FSAGNDIKFM 31
F AG D+K +
Sbjct: 67 FCAGADLKAI 76
>2vxp_A Transforming growth factor-beta-induced protein IG-H3;
RGD-containing collagen-associated protein, FAS1, BIGH3,
vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens}
PDB: 1x3b_A
Length = 132
Score = 25.3 bits (56), Expect = 6.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 82 VMADNGVTHIVNQPL 96
+MA NGV H++ L
Sbjct: 117 IMATNGVVHVITNVL 131
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 25.5 bits (56), Expect = 6.8
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 93 NQPLTQEEIEKLKKSAQAISQDYMYFLTTYI 123
N+ +T+E+ +K + A + Q++ + T +
Sbjct: 228 NRRMTEEQAKKTYERAIKMEQEFGEYFTGVV 258
>2oug_A Transcriptional activator RFAH; transcription factor, virulence,
transcription pausing, transcription elongation; 2.10A
{Escherichia coli}
Length = 162
Score = 25.2 bits (56), Expect = 6.9
Identities = 7/37 (18%), Positives = 10/37 (27%), Gaps = 5/37 (13%)
Query: 87 GVTHIVN-----QPLTQEEIEKLKKSAQAISQDYMYF 118
GV+H V + I +L D
Sbjct: 74 GVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATP 110
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural
genomics, PSI-2, structure initiative, joint center for
structural genomics; HET: MSE; 1.66A {Archaeoglobus
fulgidus} SCOP: c.8.9.1
Length = 192
Score = 25.5 bits (56), Expect = 7.0
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 85 DNGVTHIVNQPLTQEEIEKLK 105
+ + + PL +++I KLK
Sbjct: 12 HMVMEYELRTPLVKDQILKLK 32
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}
Length = 265
Score = 25.6 bits (57), Expect = 7.3
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 21 VFSAGNDIKFMLN----TIEGPRGGLTH 44
F AG D+K +EG G T
Sbjct: 71 SFCAGMDLKAFARGENVVVEGRGLGFTE 98
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 25.7 bits (56), Expect = 7.5
Identities = 3/35 (8%), Positives = 13/35 (37%)
Query: 97 TQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQLGQ 131
++E+ +K +++ + + G+
Sbjct: 179 DEQELANIKGASRVSVAVMSKYFVDELSTYIDQGK 213
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter
sphaeroides} PDB: 1w7e_A
Length = 137
Score = 25.0 bits (55), Expect = 7.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 82 VMADNGVTHIVNQ 94
V A NGV H+++
Sbjct: 119 VDASNGVIHVIDG 131
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural
genomics, lyase; 1.59A {Haemophilus influenzae} SCOP:
d.265.1.3 d.66.1.5
Length = 243
Score = 25.5 bits (57), Expect = 8.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 95 PLTQEEIEKLKKSAQ 109
PLTQ EIEKL +
Sbjct: 223 PLTQSEIEKLVEGGS 237
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum,
structura genomics, seattle structural genomics center
for infectious lyase; 1.75A {Mycobacterium marinum M}
Length = 233
Score = 25.3 bits (56), Expect = 8.0
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 21 VFSAGNDIKFM 31
VFS G D+K +
Sbjct: 59 VFSGGFDLKVL 69
>3dtd_A Invasion-associated protein B; structural genomics, PSI-2, Pro
structure initiative, NEW YORK structural genomix
research consortium; 2.35A {Bartonella henselae}
Length = 175
Score = 25.2 bits (54), Expect = 8.4
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 5 SGGWWFEFKSSHKISVVFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSK 64
G AG +K + L ++ V L F + + +
Sbjct: 108 PAGCIVPIVFDKNYVAALRAGKHLKLAMTIAAPGEPPLN-DLFVQLNGFSNALNRLIALQ 166
Query: 65 SEGHH 69
EGHH
Sbjct: 167 KEGHH 171
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural
genomics, PSI-2, protein structure initiative; 2.50A
{Pseudomonas syringae PV}
Length = 232
Score = 25.3 bits (56), Expect = 9.3
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 21 VFSAGNDIKFM 31
+ S G D+K M
Sbjct: 59 ILSGGYDLKVM 69
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B
AARS, ATP-dependen charging, protein synthesis,
structural genomics; HET: GLU; 2.05A {Burkholderia
thailandensis}
Length = 490
Score = 25.2 bits (56), Expect = 9.5
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 97 TQEEIEKLKKSAQAISQDYMY 117
+ EE++ L++ +A + Y
Sbjct: 124 STEELDALRERQRAAGEKPRY 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.406
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,254,654
Number of extensions: 119479
Number of successful extensions: 576
Number of sequences better than 10.0: 1
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 85
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)