RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17699
(149 letters)
>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 172
Score = 52.5 bits (125), Expect = 7e-10
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 54 DSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+ + + +G +GIE EVFLSLPC++ G+T ++NQ L +E+ +LKKSA +
Sbjct: 106 NLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTL 163
>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 172
Score = 51.4 bits (122), Expect = 1e-09
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 54 DSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+ + +G HGI+EEVFLS+PCV+ ++G+T V +T EE LKKSA +
Sbjct: 106 NLKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKVNMTAEEEGLLKKSADTL 163
>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish
(Squalus acanthias) [TaxId: 7797]}
Length = 169
Score = 47.2 bits (111), Expect = 5e-08
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 54 DSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+ + + +GI++ VFLSLPCV+ D+G+++IV L E ++L+KSA +
Sbjct: 103 NLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATTL 160
>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 152
Score = 46.5 bits (110), Expect = 8e-08
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 15 SHKISVVFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEE 74
+ + V F A IK TI GP + ++ + D+ +G +GIE
Sbjct: 51 AVENDVRFVAAEVIKRKGATIFGPAVAIYRMVKAVV--EDTGEIIPTSMILQGEYGIEN- 107
Query: 75 VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
V + +P + NG + + L+ EEIEKL+ SA+ +
Sbjct: 108 VAVGVPAKLGKNGA-EVADIKLSDEEIEKLRNSAKIL 143
>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate
dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId:
1583]}
Length = 163
Score = 46.4 bits (109), Expect = 1e-07
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 67 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQ 113
+ + ++LS P ++ +GV LT +E EKL +S I Q
Sbjct: 108 SNRRDDMGMYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSRDYIQQ 154
>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus
aurantiacus [TaxId: 1108]}
Length = 164
Score = 46.2 bits (109), Expect = 1e-07
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 54 DSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
D + G +G+ + ++ +P ++ GV I+ PL +EE+ L SA+A+
Sbjct: 100 DKKRVMPVAAYLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAV 156
>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 168
Score = 46.0 bits (108), Expect = 1e-07
Identities = 12/56 (21%), Positives = 26/56 (46%)
Query: 56 NVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+ +G +V + +P + +G+ +V+ L ++EI +KSA+ I
Sbjct: 103 KRLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEII 158
>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 179
Score = 45.5 bits (107), Expect = 2e-07
Identities = 9/56 (16%), Positives = 24/56 (42%)
Query: 59 SCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQD 114
S +G+ +++ S P + D + P+ EK+ +A+ ++++
Sbjct: 113 SMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAEE 168
>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium
vibrioforme [TaxId: 1098]}
Length = 163
Score = 45.5 bits (107), Expect = 3e-07
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 65 SEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
EG +GI++ F+ +P + NGV I L Q +++ L+KSA+ +
Sbjct: 111 LEGQYGIDK-TFVGVPVKLGRNGVEQIYEINLDQADLDLLQKSAKIV 156
>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus
casei [TaxId: 1582]}
Length = 172
Score = 45.2 bits (106), Expect = 3e-07
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 2/105 (1%)
Query: 7 GWWFEFKSSHKISVVFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSE 66
E K V A +I + I +L D N +
Sbjct: 57 PEIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAIL-NDENAVLPLSVYMD 115
Query: 67 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
G +GI + +++ P V+ NG+ +I+ PLT E E ++KSA +
Sbjct: 116 GQYGIND-LYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQL 159
>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 168
Score = 44.9 bits (105), Expect = 3e-07
Identities = 15/104 (14%), Positives = 32/104 (30%)
Query: 8 WWFEFKSSHKISVVFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEG 67
E + + V + + G +V + S
Sbjct: 56 KGEEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLD 115
Query: 68 HHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
E +V++ +P V+ NG+ ++ L +E + SA +
Sbjct: 116 GLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATL 159
>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase
{Bifidobacterium longum, strain am101-2 [TaxId: 216816]}
Length = 170
Score = 44.8 bits (105), Expect = 5e-07
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 53 FDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
D+N S + HGI + + +S+P ++ GV + +N P++ +E+ LK+SA+ +
Sbjct: 104 HDTNRILPVSSMLKDFHGISD-ICMSVPTLLNRQGVNNTINTPVSDKELAALKRSAETL 161
>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 165
Score = 44.8 bits (105), Expect = 5e-07
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 60 CEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+ EG + ++F P V+ NGV ++ L EE K ++
Sbjct: 108 ICSTLLEGQY-GHSDIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAET 158
>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum
arcticum [TaxId: 87645]}
Length = 171
Score = 44.4 bits (104), Expect = 6e-07
Identities = 8/49 (16%), Positives = 18/49 (36%)
Query: 65 SEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQ 113
S+G +GI E V P + + + E++ + + +
Sbjct: 113 SDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLNELLE 161
>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 173
Score = 44.4 bits (104), Expect = 6e-07
Identities = 11/64 (17%), Positives = 23/64 (35%)
Query: 50 LLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQ 109
L S+G +GI E + S P D + + + ++++ +AQ
Sbjct: 99 ALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQ 158
Query: 110 AISQ 113
+
Sbjct: 159 ELLD 162
>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium
thermocellum [TaxId: 1515]}
Length = 169
Score = 44.4 bits (104), Expect = 6e-07
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 1/105 (0%)
Query: 7 GWWFEFKSSHKISVVFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSE 66
F + KI+ ++ N V L + N +
Sbjct: 57 KCNFTEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVIN 116
Query: 67 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
G +GIE+ +SLP ++ GV ++ LT EE E L+ SA+ +
Sbjct: 117 GMYGIEDV-AISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQV 160
>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 172
Score = 43.7 bits (102), Expect = 1e-06
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 2/106 (1%)
Query: 6 GGWWFEFKSSHKISVVFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKS 65
+ A +I +I + + V +
Sbjct: 57 CQKCDSKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLE 116
Query: 66 EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+ +++ +S+P + +GV I+ L +EE+E +KSA +
Sbjct: 117 DYLG--VKDLCISVPVTLGKHGVERILELNLNEEELEAFRKSASIL 160
>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus
pentosus [TaxId: 1589]}
Length = 171
Score = 43.7 bits (102), Expect = 1e-06
Identities = 12/57 (21%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 55 SNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
N + +G +G+ + +++ P ++ G+ I+ PL+ +E++K++ SA +
Sbjct: 103 ENAVLPVGAYMDGQYGLND-IYIGTPAIIGGTGLKQIIESPLSADELKKMQDSAATL 158
>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 161
Score = 41.7 bits (97), Expect = 4e-06
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 69 HGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDY 115
E+ +P + NGV IV L E + + +A+ +S Y
Sbjct: 111 EFGHEDTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKLSDQY 157
>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum
(Sorghum vulgare), chloroplast [TaxId: 4558]}
Length = 188
Score = 41.6 bits (97), Expect = 6e-06
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 65 SEGHHGIEEEVFLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAISQ 113
+ +GI E++ S+PC +G + + E++KKS +
Sbjct: 115 TGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLA 164
>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 169
Score = 40.5 bits (94), Expect = 2e-05
Identities = 5/51 (9%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 65 SEGHHGIEEEVFLSLPCVMADNGVTHIVNQP-LTQEEIEKLKKSAQAISQD 114
S + + S P ++ G+ + ++ E + + ++ +
Sbjct: 108 SFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKAS 158
>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma
gondii [TaxId: 5811]}
Length = 174
Score = 40.2 bits (93), Expect = 2e-05
Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 68 HHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
+G+++ P V+ G+ ++ L +EE ++ +KS +
Sbjct: 119 EYGLKDMFIGL-PAVIGGAGIERVIELELNEEEKKQFQKSVDDV 161
>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia
coli [TaxId: 562]}
Length = 167
Score = 38.2 bits (88), Expect = 1e-04
Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 7/119 (5%)
Query: 1 MNFGSGGWWFEFKSSHKISVVFSAGNDIKFML----NTIEGPRGGLTHNIQVPLLDFDSN 56
++ G + E + + + +AG ++ + +
Sbjct: 41 LSQVPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGE 100
Query: 57 VESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAISQD 114
E + EG + F S P ++ NGV + L+ E L+ + +D
Sbjct: 101 QGVVECAYVEGD--GQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKD 157
>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId:
9823]}
Length = 78
Score = 26.9 bits (59), Expect = 0.41
Identities = 3/53 (5%), Positives = 17/53 (32%), Gaps = 4/53 (7%)
Query: 81 CVMADNGVTHIVNQPLTQEEI----EKLKKSAQAISQDYMYFLTTYIPKIFQL 129
C + +V ++ + ++ + + + +++ +I
Sbjct: 7 CRKIIQKLEDMVGPQPNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWD 59
>d2o34a1 d.96.2.2 (A:1-248) Hypothetical protein DVU1097
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 248
Score = 27.1 bits (60), Expect = 0.72
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 12/101 (11%)
Query: 25 GNDIKFMLNT------IEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHH---GIEEEV 75
G D+ + P G + + + + V C S GH G +
Sbjct: 128 GGDLYLYSERDRVVGILPDPASG--DMVGILVRAGTAPVSLCGSSARIGHSLSLGDGDLA 185
Query: 76 -FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDY 115
+ +AD T N +++ + + A ++
Sbjct: 186 VVRARDASLADAAATAFGNMLRRADDVAAVTERAAQLASIG 226
>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId:
9606]}
Length = 78
Score = 26.1 bits (57), Expect = 0.79
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 81 CVMADNGVTHIVNQPLTQEEIEK-LKKSAQAISQDYMY----FLTTYIPKIFQL 129
C VT +++ T++EI K + + + TY I +
Sbjct: 7 CEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSI 60
>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 140
Score = 25.9 bits (56), Expect = 1.7
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 82 VMADNGVTHIVNQPLT 97
V NG HI++ L
Sbjct: 122 VAQTNGYVHIIDHVLG 137
>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 163
Score = 25.9 bits (56), Expect = 1.7
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 82 VMADNGVTHIVNQPL 96
V N ++++ L
Sbjct: 145 VSTANATVYMIDSVL 159
>d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 266
Score = 26.0 bits (57), Expect = 1.8
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 112 SQDYMYFLTTYIPKIFQLGQVQYSSCRHIVIEMNIAGV 149
+ ++ T +P + G+V+ +H V E+ G+
Sbjct: 166 REHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGI 203
>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 157
Score = 25.6 bits (55), Expect = 1.9
Identities = 10/57 (17%), Positives = 27/57 (47%)
Query: 43 THNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQE 99
+ ++ +P ++ E++ +++ + P V NG+ H+++ PL +E
Sbjct: 96 SGSVILPTFRDSLSIRVEEEAGRYVIIWNYKKINVYRPDVECTNGIIHVIDYPLLEE 152
>d1pbua_ d.58.46.1 (A:) Elongation factor 1-gamma C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 25.1 bits (55), Expect = 3.4
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 8 WWFEFKSSHKISVVFSAGNDIKFMLNTIEGPR 39
W+ E++ +++ F + N I M ++ R
Sbjct: 47 WYSEYRFPEELTQTFMSCNLITGMFQRLDKLR 78
>d2bzea1 b.34.21.1 (A:345-476) RNA polymerase-associated protein
RTF1 homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 132
Score = 24.0 bits (52), Expect = 5.7
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 91 IVNQPLTQEEIEKLKKSAQA 110
+ NQ T+ E K K++ +
Sbjct: 90 VSNQEFTESEFMKWKEAMFS 109
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 23.5 bits (51), Expect = 6.2
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 96 LTQEEIEKLKKSAQA 110
L ++EI+K+ + A+A
Sbjct: 1 LNEDEIQKMVRDAEA 15
>d2ebfx2 c.150.1.2 (X:875-1093) Dermonecrotic toxin, ToxA
{Pasteurella multocida [TaxId: 747]}
Length = 219
Score = 24.1 bits (52), Expect = 7.1
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 35 IEGPRGGLTHNIQVPLLDFDSN 56
P GL +++P DS+
Sbjct: 178 TGRPMPGLVQYLKIPATVVDSD 199
>d1frfl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit
{Desulfovibrio fructosovorans [TaxId: 878]}
Length = 543
Score = 24.0 bits (51), Expect = 9.1
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 35 IEGPRGGLTHNIQV 48
+ PRG L+H I++
Sbjct: 466 ADAPRGSLSHWIRI 479
>d2isba1 c.8.9.1 (A:2-179) Fumarate hydratase class I beta subunit
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 178
Score = 23.6 bits (51), Expect = 9.2
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 88 VTHIVNQPLTQEEIEKLK 105
+ + + PL +++I KLK
Sbjct: 2 MEYELRTPLVKDQILKLK 19
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.406
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 565,849
Number of extensions: 23015
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 41
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.1 bits)