Query psy177
Match_columns 608
No_of_seqs 132 out of 202
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 20:45:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07034 ORC3_N: Origin recogn 100.0 4.9E-44 1.1E-48 377.7 16.6 203 73-278 97-330 (330)
2 KOG2538|consensus 100.0 3.4E-38 7.3E-43 339.4 14.9 273 294-607 233-526 (578)
3 KOG2538|consensus 97.6 1.7E-05 3.7E-10 87.8 0.9 153 129-283 184-382 (578)
4 PRK00411 cdc6 cell division co 88.2 6.6 0.00014 42.4 12.7 117 147-266 138-259 (394)
5 TIGR02928 orc1/cdc6 family rep 87.2 6.6 0.00014 41.9 11.9 118 147-267 129-252 (365)
6 PTZ00112 origin recognition co 84.3 45 0.00097 41.1 17.5 130 134-267 854-987 (1164)
7 PF07693 KAP_NTPase: KAP famil 82.8 6.7 0.00015 40.9 9.3 74 146-226 171-244 (325)
8 PRK06620 hypothetical protein; 72.0 24 0.00053 35.5 9.3 106 149-263 87-194 (214)
9 PRK08084 DNA replication initi 71.3 37 0.00079 34.5 10.5 112 150-263 100-214 (235)
10 PF00004 AAA: ATPase family as 71.2 6.2 0.00014 34.9 4.4 66 130-195 40-117 (132)
11 PRK06893 DNA replication initi 70.4 38 0.00082 34.2 10.3 115 148-264 92-209 (229)
12 TIGR00602 rad24 checkpoint pro 68.1 40 0.00086 39.8 11.1 118 147-269 195-331 (637)
13 PRK05642 DNA replication initi 65.5 52 0.0011 33.4 10.2 115 150-267 100-217 (234)
14 PRK07764 DNA polymerase III su 62.9 3.6E+02 0.0078 33.0 25.2 105 147-264 120-224 (824)
15 PF03215 Rad17: Rad17 cell cyc 62.3 58 0.0013 37.5 10.8 120 147-267 132-269 (519)
16 PF00308 Bac_DnaA: Bacterial d 60.8 46 0.001 33.5 8.8 113 148-263 98-213 (219)
17 PRK09087 hypothetical protein; 54.6 1.3E+02 0.0028 30.5 10.9 111 150-264 90-201 (226)
18 PRK08903 DnaA regulatory inact 54.4 1.4E+02 0.003 29.6 11.0 109 148-263 91-201 (227)
19 PF01637 Arch_ATPase: Archaeal 47.8 1.2E+02 0.0025 29.3 9.1 64 129-195 102-171 (234)
20 KOG2228|consensus 47.1 2E+02 0.0043 31.9 11.1 83 146-230 136-222 (408)
21 CHL00195 ycf46 Ycf46; Provisio 46.3 2.8E+02 0.006 31.8 12.8 123 133-268 68-192 (489)
22 PRK08727 hypothetical protein; 45.8 2.2E+02 0.0048 28.8 11.0 112 148-263 94-209 (233)
23 TIGR00678 holB DNA polymerase 43.8 1.7E+02 0.0037 28.1 9.4 102 131-248 76-181 (188)
24 TIGR02881 spore_V_K stage V sp 39.0 3.3E+02 0.0071 27.9 11.1 115 149-269 107-238 (261)
25 PRK00440 rfc replication facto 38.4 3.4E+02 0.0075 27.9 11.3 108 147-267 102-209 (319)
26 TIGR03345 VI_ClpV1 type VI sec 37.3 2.2E+02 0.0048 34.8 10.9 147 126-281 649-837 (852)
27 PLN03025 replication factor C 37.1 1.9E+02 0.0041 30.6 9.3 108 147-267 99-206 (319)
28 PRK12402 replication factor C 36.5 3E+02 0.0065 28.7 10.7 105 147-264 125-229 (337)
29 PRK13342 recombination factor 35.0 4.1E+02 0.0088 29.4 11.7 110 147-267 92-202 (413)
30 PRK14962 DNA polymerase III su 33.5 3E+02 0.0066 31.3 10.6 107 147-266 117-223 (472)
31 PRK14088 dnaA chromosomal repl 33.0 3.2E+02 0.007 30.6 10.6 112 148-263 195-310 (440)
32 TIGR00635 ruvB Holliday juncti 32.8 2.9E+02 0.0063 28.6 9.7 97 147-250 81-193 (305)
33 COG1366 SpoIIAA Anti-anti-sigm 31.9 1.2E+02 0.0027 27.0 5.9 52 137-189 36-87 (117)
34 TIGR02397 dnaX_nterm DNA polym 31.4 4.2E+02 0.0092 27.9 10.9 107 147-266 117-223 (355)
35 TIGR00362 DnaA chromosomal rep 30.8 2.9E+02 0.0064 30.2 9.8 109 149-262 201-314 (405)
36 KOG1514|consensus 30.4 94 0.002 37.1 5.9 92 146-245 507-604 (767)
37 PRK12422 chromosomal replicati 29.5 4.2E+02 0.009 29.9 10.8 111 148-262 203-317 (445)
38 TIGR03420 DnaA_homol_Hda DnaA 29.3 4.7E+02 0.01 25.5 10.1 110 149-265 92-205 (226)
39 TIGR03346 chaperone_ClpB ATP-d 28.7 4.5E+02 0.0098 32.2 11.6 147 126-280 648-831 (852)
40 PRK00149 dnaA chromosomal repl 28.5 2.9E+02 0.0063 30.8 9.3 111 148-263 212-327 (450)
41 PRK14957 DNA polymerase III su 27.0 6.9E+02 0.015 29.2 12.1 107 147-266 119-225 (546)
42 PRK14087 dnaA chromosomal repl 26.2 7.9E+02 0.017 27.7 12.3 112 148-261 207-322 (450)
43 KOG0502|consensus 26.2 25 0.00054 36.3 0.4 18 586-603 208-225 (296)
44 PRK08699 DNA polymerase III su 26.2 2.7E+02 0.0058 30.0 8.2 87 129-223 91-182 (325)
45 PF10088 DUF2326: Uncharacteri 25.5 97 0.0021 29.2 4.2 63 123-188 40-104 (140)
46 PRK14965 DNA polymerase III su 24.0 1.2E+03 0.026 27.2 19.8 105 148-265 120-224 (576)
47 COG1474 CDC6 Cdc6-related prot 23.9 9E+02 0.02 26.5 11.9 114 147-266 123-242 (366)
48 PF13191 AAA_16: AAA ATPase do 21.9 56 0.0012 30.6 1.9 49 134-183 136-185 (185)
49 PRK04195 replication factor C 21.7 7.2E+02 0.016 28.0 10.9 104 147-264 98-205 (482)
50 PF14516 AAA_35: AAA-like doma 21.3 1.7E+02 0.0037 31.4 5.6 30 147-176 127-158 (331)
51 PRK10865 protein disaggregatio 21.2 4.2E+02 0.0092 32.5 9.4 126 147-280 670-834 (857)
No 1
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=100.00 E-value=4.9e-44 Score=377.68 Aligned_cols=203 Identities=31% Similarity=0.524 Sum_probs=173.3
Q ss_pred HhhhhcccccccHHHHHHhh-cccchheecccCCC-cc-c-----------ccCCCCCCcchhhhhcccccCCChHHHHH
Q psy177 73 VNLKKTHHDFLNFQDYYNEI-GCKDKLIIVTQSDT-PV-E-----------SSKASDVESDEDVEVNLKKTHYDFLNFQD 138 (608)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~-----------~~~~~~~~~~~~~~~~~~~~~yDl~~L~~ 138 (608)
||+.+|...|-.|...+++. ||+- +.++|-. +. + ......++++++...++++.+|||+.|++
T Consensus 97 vN~~dh~~~F~~L~~~L~~~~~~~v---v~L~S~dc~~lk~~lk~iv~ql~~~~~~~~~~~~~~~~~~~~~~yd~~~L~~ 173 (330)
T PF07034_consen 97 VNIPDHDLLFEQLSERLQSSVGPYV---VRLNSKDCSNLKSALKSIVRQLMSDKSDVDEDEEEEEKGQRRLNYDMDILAA 173 (330)
T ss_pred CCCccHHHHHHHHHHHHHhCCCcEE---EEEecccchHHHHHHHHHHHHHHhcccccccccchhhcccCcCCCCHHHHHH
Confidence 57777888888888888777 6653 3334321 11 0 11111222222334789999999999999
Q ss_pred HHHhh-----------------CCCCcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHH
Q psy177 139 YYNEI-----------------GCKDKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDV 201 (608)
Q Consensus 139 Wy~~~-----------------~~~~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~ 201 (608)
||... ..++||||||+|+|+||++||+|||.+||+|+++|||+||||||||+++||++||+++
T Consensus 174 wy~~~~~~~~~~~~~~~~~~~~~~~~~lVIi~eD~EsF~~~VL~dlI~ils~~~~~lP~vli~GiaTs~~~~~~~Lp~~~ 253 (330)
T PF07034_consen 174 WYQNNTKKNDSPSKQKNFSSSRDKSPPLVIIFEDFESFDSQVLQDLILILSSYLDRLPFVLIFGIATSVEAFHSRLPRST 253 (330)
T ss_pred HHHhhhccccchhhhcccccccccCCCEEEEEcccccCCHHHHHHHHHHHHhccCCcCEEEEEecCCChHHHHhhCCHHH
Confidence 99921 1127999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccceeeeecChhhHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHhhhhcCchhhh
Q psy177 202 ISTMKIHTFYNQPSIESLNLITDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICILKHISMNNINAL 278 (608)
Q Consensus 202 ~~~L~~~~F~~~~~~~~l~~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M~HFy~nPLSvL 278 (608)
+++|++++|+++++..++++|++++|++++.||+|||+++++|+++|++||+||++||++||||||+|||+||||+|
T Consensus 254 ~~~L~~~~F~~~~~~~~l~~v~~~~l~~~~~~~~l~~~~~~~L~~~f~~~~~Sv~~fi~~lk~~~m~HF~~nPLS~L 330 (330)
T PF07034_consen 254 LSLLRIKKFQLQSSSEILERVLEKVLLSPDFPFKLGPRVLQFLLDRFLDHDFSVDSFISGLKYAYMEHFYSNPLSVL 330 (330)
T ss_pred HhhcCceEEEeCChHHHHHHHHHHHhcCCCCCceECHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhccCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>KOG2538|consensus
Probab=100.00 E-value=3.4e-38 Score=339.44 Aligned_cols=273 Identities=27% Similarity=0.372 Sum_probs=196.6
Q ss_pred HHHHHHHHcCCChHHHHhh------hcCCchhHHhH-----HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcHHHHHHH
Q psy177 294 ANMLNEIKELDSVAKLSIK------KLDSNGVVKYS-----IELFEFITNMYSSLQCLFALVYDLPNNPLGKQLRDIYCI 362 (608)
Q Consensus 294 ~~~le~iR~LPSFr~~vE~------LL~dD~~l~~~-----~~l~~~~~~~~~~Lr~L~~l~~~l~~~PlGk~~~eLy~~ 362 (608)
+.++|.||+|||||+|||. +|++|.+++++ +.+.-++..++.+|+||+-... ..+++|+.
T Consensus 233 h~d~E~I~~lpsfr~yvEk~~~~kaiL~~~~y~~k~~i~l~~~~~~~~~l~r~~L~~l~~~~~---------l~~~l~~~ 303 (578)
T KOG2538|consen 233 HVDTERIRRLPSFRPYVEKNLRQKAILTLDRYLKKVPIQLLEGLLYAHDLFRKILSTLDGKLN---------LVRALYRL 303 (578)
T ss_pred hhhHHHHhcCCcchhhHHhhhhhhhhhhhHHHHHHhhHHHHhhhHHHHHHHHHHHHHHhhhhH---------HHHHHHHH
Confidence 8899999999999999998 99999999988 8888888889999999987533 79999999
Q ss_pred HHhCCCcccchhHHHHHHHHhhcCHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhc
Q psy177 363 VLSEKVFVESSTFKQCLQLIQFISKQELLE--KCLQLIQFISKQELLEKVKSIILILNQNKNLKTVLEEVQKLQQEIKNA 440 (608)
Q Consensus 363 aL~~~~l~~S~~~~~~l~llk~ls~deL~~--~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~L~~L~~~~~~~ 440 (608)
|+ +..++++++|.++++++.++.+|++.+ ....|.+.+..- . + +-++.+-.-.+.+....+..
T Consensus 304 cL-~r~i~sT~e~~~~~~ml~fL~~d~~~t~~i~~~c~~~lr~~-~-~------------~~l~~~~~~v~~~~~~~qq~ 368 (578)
T KOG2538|consen 304 CL-ERAILSTPEYMDALQMLVFLKKDEFFTNFISEKCAAFLRSY-F-L------------KILGTLDSFVETLKAAIQQH 368 (578)
T ss_pred HH-HHHhcCCHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHH-H-H------------HHHhhhHHHHHHHHHHHhcc
Confidence 99 999999999999999999999999998 666777666421 0 0 11111111122222222221
Q ss_pred Ch-hhhhhccccccccCCCcc-chHHHHHHHHHHhhhhhhhhhhhhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q psy177 441 DT-EVQIKHKNDISKLNLTPK-SRAQLKQNLLESIKQDKLQFEFDIKREKFSIKQDKLQFEFDIKREKFVQYLIKNLFRN 518 (608)
Q Consensus 441 ~~-e~~~~~~~~~~~~~~~~~-s~~~lq~~Ll~~s~~~~~s~~~s~~~s~~~~~~~~~~~e~~~l~~~~~d~L~~~~l~~ 518 (608)
.. |+. .... +.+++ +...+..-+++.++-..+..-.....+. +|.++..+++..++. .++.
T Consensus 369 ~~~e~~---q~l~---~~~~~~~~q~~~~~lvr~~~~d~~r~~~~~~~t~----------df~~~~~k~v~l~e~-~v~~ 431 (578)
T KOG2538|consen 369 FPLEEL---QILL---ELFPHGLEQFLNQCLVRASKFDGLRLLRIFCETL----------DFEARLLKYVSLIEI-LVSQ 431 (578)
T ss_pred CcchHH---HHHH---hcCCccHHHHHHHHHHHhccchhhHHHHhHhhhc----------cHHHHHHHHhhHHHH-HHHH
Confidence 10 000 0000 01111 1122333333332111000000123330 344889999999998 7666
Q ss_pred cCCC---CCCcCeeeEEEeCCchhhhhhcc-CCchHHHHHHhcCCccccccC--ccCCCCCCCCCCCCChHHHHHHHhhh
Q psy177 519 YFTP---IQNMPLHEIVLFSDCHLLKKYLA-GAPRAAIHTALNNPNYYMQCD--CCKVNDPSEMLPSMPDVSLAYKLHLE 592 (608)
Q Consensus 519 ~L~p---p~~lpLhEIf~fd~~~~lr~~f~-p~PR~aIe~AL~~P~~YL~c~--cc~l~~~~~l~~tlPDtsIlYkLylE 592 (608)
.+-+ ++..|+||+++|++..++++.|. +.||.++|+||+||++|++|+ ||...++.-..+++||+||+||||+|
T Consensus 432 ~~l~~l~~~~~p~~e~l~f~~~~tl~q~l~s~~~RsalhTa~n~P~yyl~~e~~a~e~~~g~l~~~~aPdl~i~yKL~~E 511 (578)
T KOG2538|consen 432 SHLSGLNNDIRPVHEVLRFSSISTLRQMLKSGANRSALHTALNDPVYYLHPEMRAVEAADGRLLLPNAPDLSILYKLYLE 511 (578)
T ss_pred hhccccccchhhHHHHHhcCchHHHHHHHhcccchhHHHHhhcCceeecccHHhhHhhhcCCcccCcCchHHHHHHHHHH
Confidence 6645 78999999999999999999999 999999999999999999999 99834444456699999999999999
Q ss_pred cCCcccHHHHHhhhc
Q psy177 593 SATMINIHDWLQSFA 607 (608)
Q Consensus 593 sG~LINlyDW~qAF~ 607 (608)
||++||+|||++||.
T Consensus 512 ~~~liNl~Dw~~AF~ 526 (578)
T KOG2538|consen 512 CGRLINLYDWYIAFR 526 (578)
T ss_pred HhHHHHHHHHHHHHH
Confidence 999999999999996
No 3
>KOG2538|consensus
Probab=97.61 E-value=1.7e-05 Score=87.75 Aligned_cols=153 Identities=18% Similarity=0.275 Sum_probs=124.2
Q ss_pred cCCChHHHHHHHHhhCCCCcEEEEeccCCCCChhhHHHHHHHHH------------------------------------
Q psy177 129 THYDFLNFQDYYNEIGCKDKLIIALQDYESFPCSILNEFLLILH------------------------------------ 172 (608)
Q Consensus 129 ~~yDl~~L~~Wy~~~~~~~~LVIileD~EsFd~~VL~DlI~llS------------------------------------ 172 (608)
.+|++..++.+-.+..+ |++|+|++|+|+|+.+||||||.+++
T Consensus 184 ~s~~~~~~~~~~~~~~~-p~~V~iLkd~~sfn~nvlq~~iIil~~aKOG~h~d~E~I~~lpsfr~yvEk~~~~kaiL~~~ 262 (578)
T KOG2538|consen 184 KSGVLSLLRNFDRQFVS-PADVTILKDVESFNKNVLQDFIIILSSALCLDHVDTERIRRLPSFRPYVEKNLRQKAILTLD 262 (578)
T ss_pred hhHHHHHHhhhhhhhCC-ccceEEecchHhHhhhcccceEEEehhhhccchhhHHHHhcCCcchhhHHhhhhhhhhhhhH
Confidence 34444444444444443 89999999999999999999998865
Q ss_pred HhhccCCeEEEEccccChHHHhhhcc--------HHHHhcccceeeeecChhhHHHHHHHHHhhCCCCCcc--cCHHHHH
Q psy177 173 EYLVTLPFILILGVSTSPSIIHSTLN--------YDVISTMKIHTFYNQPSIESLNLITDNIILNNKFPLI--LHHTILE 242 (608)
Q Consensus 173 s~~~~IP~vlIfGIATsv~~~~~~Lp--------~s~~~~L~~~~F~~~~~~~~l~~I~~~~l~~~~~p~~--Lg~~v~~ 242 (608)
.|..+.|+-++.|+.+--.+++..|. ....-+++..++...++ ++.+.+..-.|+..+.-|. +|+.+..
T Consensus 263 ~y~~k~~i~l~~~~~~~~~l~r~~L~~l~~~~~l~~~l~~~cL~r~i~sT~-e~~~~~~ml~fL~~d~~~t~~i~~~c~~ 341 (578)
T KOG2538|consen 263 RYLKKVPIQLLEGLLYAHDLFRKILSTLDGKLNLVRALYRLCLERAILSTP-EYMDALQMLVFLKKDEFFTNFISEKCAA 341 (578)
T ss_pred HHHHHhhHHHHhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcchhhhhhhHHHHHHH
Confidence 35556778888888777666666665 55666677777776666 9999999999999998788 9999999
Q ss_pred HHHHHHhhcccCHHHHHHHHHHHHHhhhhcCchhhhhhccc
Q psy177 243 FLIDNFLFYDFSLHTFMKGVKICILKHISMNNINALCYNIM 283 (608)
Q Consensus 243 ~Lld~F~~~d~Sv~~fi~~LK~a~M~HFy~nPLSvL~~~~~ 283 (608)
+|.++|+.+..+++.|+..++-++-.||-.+|+..+.....
T Consensus 342 ~lr~~~~~~l~~~~~~v~~~~~~~qq~~~~e~~q~l~~~~~ 382 (578)
T KOG2538|consen 342 FLRSYFLKILGTLDSFVETLKAAIQQHFPLEELQILLELFP 382 (578)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccCcchHHHHHHhcCC
Confidence 99999999999999999999999999999999999876653
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=88.19 E-value=6.6 Score=42.40 Aligned_cols=117 Identities=17% Similarity=0.213 Sum_probs=72.2
Q ss_pred CcEEEEeccCCCCC----hhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecC-hhhHHHH
Q psy177 147 DKLIIALQDYESFP----CSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQP-SIESLNL 221 (608)
Q Consensus 147 ~~LVIileD~EsFd----~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~-~~~~l~~ 221 (608)
.++||+|.+++.+. ..+|..|+.++..+.. .++. ++||+...+.... +...+.+.+....+.+++ ..+-+..
T Consensus 138 ~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~-~~v~-vI~i~~~~~~~~~-l~~~~~s~~~~~~i~f~py~~~e~~~ 214 (394)
T PRK00411 138 RVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPG-ARIG-VIGISSDLTFLYI-LDPRVKSVFRPEEIYFPPYTADEIFD 214 (394)
T ss_pred CEEEEEECCHhHhhccCCchHHHHHHHhhhccCC-CeEE-EEEEECCcchhhh-cCHHHHhcCCcceeecCCCCHHHHHH
Confidence 58999999999885 5677777765544432 2433 4466666554444 666677777666666654 3344445
Q ss_pred HHHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Q psy177 222 ITDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICI 266 (608)
Q Consensus 222 I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~ 266 (608)
|++.-+...-.+-.+.+.+++.+..........+...+..++.|.
T Consensus 215 il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 215 ILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred HHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 555544332113357889999998877665666655555555443
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=87.25 E-value=6.6 Score=41.86 Aligned_cols=118 Identities=15% Similarity=0.114 Sum_probs=72.0
Q ss_pred CcEEEEeccCCCC---ChhhHHHHHHHHHHhhccCC--eEEEEccccChHHHhhhccHHHHhcccceeeeecC-hhhHHH
Q psy177 147 DKLIIALQDYESF---PCSILNEFLLILHEYLVTLP--FILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQP-SIESLN 220 (608)
Q Consensus 147 ~~LVIileD~EsF---d~~VL~DlI~llSs~~~~IP--~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~-~~~~l~ 220 (608)
+++||+|.+++.+ +..+|..|+.+.. ...+| -+.++|++..++... .+...+.+.+....+.+++ +.+-+.
T Consensus 129 ~~~vlvIDE~d~L~~~~~~~L~~l~~~~~--~~~~~~~~v~lI~i~n~~~~~~-~l~~~~~s~~~~~~i~f~p~~~~e~~ 205 (365)
T TIGR02928 129 DSLIIVLDEIDYLVGDDDDLLYQLSRARS--NGDLDNAKVGVIGISNDLKFRE-NLDPRVKSSLCEEEIIFPPYDAEELR 205 (365)
T ss_pred CeEEEEECchhhhccCCcHHHHhHhcccc--ccCCCCCeEEEEEEECCcchHh-hcCHHHhccCCcceeeeCCCCHHHHH
Confidence 6899999999999 3445555543311 22222 244556777766554 5666667777655566664 333455
Q ss_pred HHHHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 221 LITDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 221 ~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
.|+..-+.....+-.+.+.+++++.+........+-..+..++.|.+
T Consensus 206 ~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 206 DILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred HHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 56655543221233578888888888777667777777776666554
No 6
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=84.31 E-value=45 Score=41.07 Aligned_cols=130 Identities=9% Similarity=0.168 Sum_probs=82.7
Q ss_pred HHHHHHHHhh--CCCCcEEEEeccCCCCChhhHHHHHHHHHHhhccCC-eEEEEccccChHHHhhhccHHHHhcccceee
Q psy177 134 LNFQDYYNEI--GCKDKLIIALQDYESFPCSILNEFLLILHEYLVTLP-FILILGVSTSPSIIHSTLNYDVISTMKIHTF 210 (608)
Q Consensus 134 ~~L~~Wy~~~--~~~~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP-~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F 210 (608)
+.|...+... ..+...||+|.|++.+... =++++.-|..|...-. -+.|+||+.+.++....+| .+.++|....+
T Consensus 854 evLerLF~~L~k~~r~v~IIILDEID~L~kK-~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdP-RLRSRLg~eeI 931 (1164)
T PTZ00112 854 KILDRLFNQNKKDNRNVSILIIDEIDYLITK-TQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIP-RCRSRLAFGRL 931 (1164)
T ss_pred HHHHHHHhhhhcccccceEEEeehHhhhCcc-HHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhh-hhhhccccccc
Confidence 4555544432 1224679999999999865 3555554545543211 2457799998887776555 66677766434
Q ss_pred eecC-hhhHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 211 YNQP-SIESLNLITDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 211 ~~~~-~~~~l~~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
.+++ ..+-+..|++.-+... .-.+.+.+++++...--.....+-..+..|+.|..
T Consensus 932 vF~PYTaEQL~dILk~RAe~A--~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 932 VFSPYKGDEIEKIIKERLENC--KEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred cCCCCCHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 4443 3444444554444332 23689999999998776667888888888888875
No 7
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=82.76 E-value=6.7 Score=40.95 Aligned_cols=74 Identities=19% Similarity=0.211 Sum_probs=51.8
Q ss_pred CCcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHH
Q psy177 146 KDKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDN 225 (608)
Q Consensus 146 ~~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~ 225 (608)
+.|+||+|.|++.|++.-.-+++..+....+-=++++|+++... .+.+.+. .-.+..|.-..+.++++.+|+-
T Consensus 171 ~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~--~l~~ai~-----~~~~~~~~~~~~~~yLeKiiq~ 243 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPE--ILEKAIE-----KNYGEGFDEIDGREYLEKIIQV 243 (325)
T ss_pred CceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHH--HHHHHHH-----hhcCcccccccHHHHHHhhcCe
Confidence 37999999999999999999999999999998889999998653 3322111 1111112334556666666655
Q ss_pred H
Q psy177 226 I 226 (608)
Q Consensus 226 ~ 226 (608)
-
T Consensus 244 ~ 244 (325)
T PF07693_consen 244 P 244 (325)
T ss_pred E
Confidence 3
No 8
>PRK06620 hypothetical protein; Validated
Probab=71.96 E-value=24 Score=35.46 Aligned_cols=106 Identities=16% Similarity=0.202 Sum_probs=70.6
Q ss_pred EEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhccc-ceeeeecCh-hhHHHHHHHHH
Q psy177 149 LIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMK-IHTFYNQPS-IESLNLITDNI 226 (608)
Q Consensus 149 LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~-~~~F~~~~~-~~~l~~I~~~~ 226 (608)
-+++++|.+.+...-|-.++..+.+-- -.+|++-.|.+..+. + ....++|. +-.+.+.++ .+.+..++++.
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~e~g----~~ilits~~~p~~l~--l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~ 159 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIINEKQ----KYLLLTSSDKSRNFT--L-PDLSSRIKSVLSILLNSPDDELIKILIFKH 159 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHHhcC----CEEEEEcCCCccccc--h-HHHHHHHhCCceEeeCCCCHHHHHHHHHHH
Confidence 467889999775443434443333321 246777777777653 5 45667776 556777753 34567788777
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHH
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVK 263 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK 263 (608)
+... .+.+++.++.+|..++...--++.+.+..|.
T Consensus 160 ~~~~--~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 194 (214)
T PRK06620 160 FSIS--SVTISRQIIDFLLVNLPREYSKIIEILENIN 194 (214)
T ss_pred HHHc--CCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7653 5889999999999999776666666666654
No 9
>PRK08084 DNA replication initiation factor; Provisional
Probab=71.34 E-value=37 Score=34.50 Aligned_cols=112 Identities=11% Similarity=-0.008 Sum_probs=74.4
Q ss_pred EEEeccCCCCChh--hHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecCh-hhHHHHHHHHH
Q psy177 150 IIALQDYESFPCS--ILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPS-IESLNLITDNI 226 (608)
Q Consensus 150 VIileD~EsFd~~--VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~-~~~l~~I~~~~ 226 (608)
+|+|.|+..+... -=..|..++......=...+|+.=..++..+...+|.=..++-.|-.|.+.+. .+-+-+++++.
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~ 179 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLR 179 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHH
Confidence 6888999988642 22334444444333211124433334567777777777777777788888875 55666677775
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHH
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVK 263 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK 263 (608)
.... .+.+++.++.+|..++...--.+.+.+..|.
T Consensus 180 a~~~--~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 214 (235)
T PRK08084 180 ARLR--GFELPEDVGRFLLKRLDREMRTLFMTLDQLD 214 (235)
T ss_pred HHHc--CCCCCHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 5543 4899999999999998877777777777664
No 10
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=71.15 E-value=6.2 Score=34.88 Aligned_cols=66 Identities=12% Similarity=0.236 Sum_probs=46.4
Q ss_pred CCChHHHHHHHHhhCCCC-cEEEEeccCCCCChhh-----------HHHHHHHHHHhhccCCeEEEEccccChHHHhh
Q psy177 130 HYDFLNFQDYYNEIGCKD-KLIIALQDYESFPCSI-----------LNEFLLILHEYLVTLPFILILGVSTSPSIIHS 195 (608)
Q Consensus 130 ~yDl~~L~~Wy~~~~~~~-~LVIileD~EsFd~~V-----------L~DlI~llSs~~~~IP~vlIfGIATsv~~~~~ 195 (608)
......+..|+++..... |.||+|+|+|.+-+.. ++.|...+..+...-+=++++|.+..++.+..
T Consensus 40 ~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~ 117 (132)
T PF00004_consen 40 GDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDP 117 (132)
T ss_dssp THHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCH
T ss_pred cccccccccccccccccccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCH
Confidence 334556777777653334 8999999999999987 88888888888876443555566665544443
No 11
>PRK06893 DNA replication initiation factor; Validated
Probab=70.35 E-value=38 Score=34.21 Aligned_cols=115 Identities=10% Similarity=0.051 Sum_probs=76.6
Q ss_pred cEEEEeccCCCCChh--hHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecC-hhhHHHHHHH
Q psy177 148 KLIIALQDYESFPCS--ILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQP-SIESLNLITD 224 (608)
Q Consensus 148 ~LVIileD~EsFd~~--VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~-~~~~l~~I~~ 224 (608)
.=++++.|+...... --..|..++.....+=-.++|++=.++++.+...+|.=..++-.+..|.+.. ..+-...|++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 458999999987532 2224555555444332234566666778888876665444433455666664 4555666777
Q ss_pred HHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHH
Q psy177 225 NIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKI 264 (608)
Q Consensus 225 ~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~ 264 (608)
+..... .+.++..++.+|..++...-.++.+.+..|..
T Consensus 172 ~~a~~~--~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~ 209 (229)
T PRK06893 172 RNAYQR--GIELSDEVANFLLKRLDRDMHTLFDALDLLDK 209 (229)
T ss_pred HHHHHc--CCCCCHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 766644 48999999999999999888888888887753
No 12
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.13 E-value=40 Score=39.81 Aligned_cols=118 Identities=15% Similarity=0.209 Sum_probs=74.3
Q ss_pred CcEEEEeccC----CCCChhhHHHHHH-HHHHhhccCCeEEEEccccC----h----HHHhhhccHHHHhcccceeeeec
Q psy177 147 DKLIIALQDY----ESFPCSILNEFLL-ILHEYLVTLPFILILGVSTS----P----SIIHSTLNYDVISTMKIHTFYNQ 213 (608)
Q Consensus 147 ~~LVIileD~----EsFd~~VL~DlI~-llSs~~~~IP~vlIfGIATs----v----~~~~~~Lp~s~~~~L~~~~F~~~ 213 (608)
.+.||+|+|+ .. +...+++++. +..+ ..++|+++|..=.-+ . -..++.|.+..++...+..|.+.
T Consensus 195 ~~~IILIDEiPn~~~r-~~~~lq~lLr~~~~e-~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~Fn 272 (637)
T TIGR00602 195 DKKIILVEDLPNQFYR-DTRALHEILRWKYVS-IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFN 272 (637)
T ss_pred ceeEEEeecchhhchh-hHHHHHHHHHHHhhc-CCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeC
Confidence 5789999999 55 4457888877 4433 457776655431100 0 11234455788876677777777
Q ss_pred C-hhhHHHHHHHHHhhCCCC----Cc-ccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHhh
Q psy177 214 P-SIESLNLITDNIILNNKF----PL-ILHHTILEFLIDNFLFYDFSLHTFMKGVKICILKH 269 (608)
Q Consensus 214 ~-~~~~l~~I~~~~l~~~~~----p~-~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M~H 269 (608)
+ +...+...++.++..... .. ..++.++..|.. ..+.-+-..|..|+++++..
T Consensus 273 Pia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~---~s~GDiRsAIn~LQf~~~~~ 331 (637)
T TIGR00602 273 PIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQ---GCSGDIRSAINSLQFSSSKS 331 (637)
T ss_pred CCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHH---hCCChHHHHHHHHHHHHhcC
Confidence 6 555555555555543211 12 335667766655 78999999999999998754
No 13
>PRK05642 DNA replication initiation factor; Validated
Probab=65.45 E-value=52 Score=33.39 Aligned_cols=115 Identities=14% Similarity=0.057 Sum_probs=79.6
Q ss_pred EEEeccCCCCC--hhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecC-hhhHHHHHHHHH
Q psy177 150 IIALQDYESFP--CSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQP-SIESLNLITDNI 226 (608)
Q Consensus 150 VIileD~EsFd--~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~-~~~~l~~I~~~~ 226 (608)
+++++|+..+. +..-..|..++.....+= -.+|++=.+++..+...+|.=..++-.+-.|.+.+ +.+..-.+++.-
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g-~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSG-RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcC-CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 57789998775 344566888886654421 23677777778777766777666665666677766 444555566633
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
.... .+.+++.++.+|..++...--++.+.+..|..+-+
T Consensus 179 a~~~--~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l 217 (234)
T PRK05642 179 ASRR--GLHLTDEVGHFILTRGTRSMSALFDLLERLDQASL 217 (234)
T ss_pred HHHc--CCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3332 48899999999999999888888888888864333
No 14
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=62.90 E-value=3.6e+02 Score=33.02 Aligned_cols=105 Identities=14% Similarity=0.075 Sum_probs=70.6
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
+.=||||++.|.++..-.+.|+.++-+.-.. ++||| ++|.++. |.....++.....|...+..++. ..+.++
T Consensus 120 ~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~--~~fIl-~tt~~~k----Ll~TIrSRc~~v~F~~l~~~~l~-~~L~~i 191 (824)
T PRK07764 120 RYKIFIIDEAHMVTPQGFNALLKIVEEPPEH--LKFIF-ATTEPDK----VIGTIRSRTHHYPFRLVPPEVMR-GYLERI 191 (824)
T ss_pred CceEEEEechhhcCHHHHHHHHHHHhCCCCC--eEEEE-EeCChhh----hhHHHHhheeEEEeeCCCHHHHH-HHHHHH
Confidence 3457889999999999999999877765443 44444 3354542 66677888887788877655444 444555
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHH
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKI 264 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~ 264 (608)
+.... +.+....+.+|.... +.|+...++.|.-
T Consensus 192 l~~EG--v~id~eal~lLa~~s---gGdlR~Al~eLEK 224 (824)
T PRK07764 192 CAQEG--VPVEPGVLPLVIRAG---GGSVRDSLSVLDQ 224 (824)
T ss_pred HHHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 54433 567888888876654 4677777776653
No 15
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=62.25 E-value=58 Score=37.49 Aligned_cols=120 Identities=14% Similarity=0.136 Sum_probs=79.1
Q ss_pred CcEEEEeccCCC-CChhhHHHHHHHHHHhhc--cC-CeEEEEc--cccCh--------HHHhhhccHHHHhcccceeeee
Q psy177 147 DKLIIALQDYES-FPCSILNEFLLILHEYLV--TL-PFILILG--VSTSP--------SIIHSTLNYDVISTMKIHTFYN 212 (608)
Q Consensus 147 ~~LVIileD~Es-Fd~~VL~DlI~llSs~~~--~I-P~vlIfG--IATsv--------~~~~~~Lp~s~~~~L~~~~F~~ 212 (608)
.+-||.|||+=. |...- ..|=.+|.+|+. +. |+|+|+. =..+. -..++.||++++....+....+
T Consensus 132 ~~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~F 210 (519)
T PF03215_consen 132 NKKVILVEDLPNVFHRDT-SRFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKF 210 (519)
T ss_pred CceEEEeeccccccchhH-HHHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEe
Confidence 456778888865 55555 777777777765 45 9999887 11111 1356789999999999888888
Q ss_pred cC-hhhHHHHHHHHHhhCCCC---CcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 213 QP-SIESLNLITDNIILNNKF---PLILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 213 ~~-~~~~l~~I~~~~l~~~~~---p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
.+ +...|-..+.++...... +-.--|....+|-.......+-|-+-|..|||.++
T Consensus 211 NpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 211 NPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred cCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 87 566666666666554410 11111112233334445677889999999999998
No 16
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=60.83 E-value=46 Score=33.50 Aligned_cols=113 Identities=15% Similarity=0.094 Sum_probs=72.2
Q ss_pred cEEEEeccCCCCChhh--HHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecC-hhhHHHHHHH
Q psy177 148 KLIIALQDYESFPCSI--LNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQP-SIESLNLITD 224 (608)
Q Consensus 148 ~LVIileD~EsFd~~V--L~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~-~~~~l~~I~~ 224 (608)
-=+++|.|++.+...- -..|..++..+..+=.- +|+.-..+|+.+....|+=..++-.|-.+.+.+ ..+..-+|++
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~-li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~ 176 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQ-LILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQ 176 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSE-EEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCe-EEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHH
Confidence 3478999999998764 56677777666654332 344444455666666665556666667788875 4455556666
Q ss_pred HHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHH
Q psy177 225 NIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVK 263 (608)
Q Consensus 225 ~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK 263 (608)
+....- .+.+++.++.+|..++.+.-.++.+.+..|.
T Consensus 177 ~~a~~~--~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 177 KKAKER--GIELPEEVIEYLARRFRRDVRELEGALNRLD 213 (219)
T ss_dssp HHHHHT--T--S-HHHHHHHHHHTTSSHHHHHHHHHHHH
T ss_pred HHHHHh--CCCCcHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 655544 4679999999999999887777777777665
No 17
>PRK09087 hypothetical protein; Validated
Probab=54.64 E-value=1.3e+02 Score=30.47 Aligned_cols=111 Identities=9% Similarity=0.025 Sum_probs=77.8
Q ss_pred EEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecC-hhhHHHHHHHHHhh
Q psy177 150 IIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQP-SIESLNLITDNIIL 228 (608)
Q Consensus 150 VIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~-~~~~l~~I~~~~l~ 228 (608)
+|+++|.+.... --..|..++.....+= -.+|++-.+.+..+...+|.=..++-.+..+.+.+ ..+-...++++.+.
T Consensus 90 ~l~iDDi~~~~~-~~~~lf~l~n~~~~~g-~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 90 PVLIEDIDAGGF-DETGLFHLINSVRQAG-TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred eEEEECCCCCCC-CHHHHHHHHHHHHhCC-CeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 577799987642 2345666665444421 23777777888877777766555555666777765 45677777887776
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHH
Q psy177 229 NNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKI 264 (608)
Q Consensus 229 ~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~ 264 (608)
.. .+.+.+.++.+|..++...-.++...+..|..
T Consensus 168 ~~--~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~ 201 (226)
T PRK09087 168 DR--QLYVDPHVVYYLVSRMERSLFAAQTIVDRLDR 201 (226)
T ss_pred Hc--CCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 64 58999999999999999777777777777753
No 18
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=54.39 E-value=1.4e+02 Score=29.63 Aligned_cols=109 Identities=11% Similarity=0.110 Sum_probs=68.0
Q ss_pred cEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhccc-ceeeeecChhhH-HHHHHHH
Q psy177 148 KLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMK-IHTFYNQPSIES-LNLITDN 225 (608)
Q Consensus 148 ~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~-~~~F~~~~~~~~-l~~I~~~ 225 (608)
.-+|+|.|++..+......|..++......-..++|+.-..++. ...+.....+++. +..+.+++..+. .-.++.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~--~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPL--ALPLREDLRTRLGWGLVYELKPLSDADKIAALKA 168 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHH--hCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHH
Confidence 34688899999998887777777766655444334444333332 2234455666664 467888875542 3334444
Q ss_pred HhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHH
Q psy177 226 IILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVK 263 (608)
Q Consensus 226 ~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK 263 (608)
... +..+.+.+.++.+|..+ ...++..+...|+
T Consensus 169 ~~~--~~~v~l~~~al~~L~~~---~~gn~~~l~~~l~ 201 (227)
T PRK08903 169 AAA--ERGLQLADEVPDYLLTH---FRRDMPSLMALLD 201 (227)
T ss_pred HHH--HcCCCCCHHHHHHHHHh---ccCCHHHHHHHHH
Confidence 433 33578999999999984 4555666555555
No 19
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=47.82 E-value=1.2e+02 Score=29.27 Aligned_cols=64 Identities=14% Similarity=0.303 Sum_probs=40.7
Q ss_pred cCCChHHHHHHHHhhCCCCcEEEEeccCCCCC------hhhHHHHHHHHHHhhccCCeEEEEccccChHHHhh
Q psy177 129 THYDFLNFQDYYNEIGCKDKLIIALQDYESFP------CSILNEFLLILHEYLVTLPFILILGVSTSPSIIHS 195 (608)
Q Consensus 129 ~~yDl~~L~~Wy~~~~~~~~LVIileD~EsFd------~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~ 195 (608)
..-.+..+-.-+.+.+. ++||+|.|++.+. ..++..|..++..+...-++.+|| ++++.++.+.
T Consensus 102 ~~~~l~~~~~~l~~~~~--~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~-~~S~~~~~~~ 171 (234)
T PF01637_consen 102 SFSALERLLEKLKKKGK--KVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVI-TGSSDSLMEE 171 (234)
T ss_dssp -G--HHHHHHHHHHCHC--CEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEE-EESSHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC--cEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEE-ECCchHHHHH
Confidence 34455555555555543 5999999999999 688889999888888888887775 3344455544
No 20
>KOG2228|consensus
Probab=47.13 E-value=2e+02 Score=31.86 Aligned_cols=83 Identities=19% Similarity=0.305 Sum_probs=50.9
Q ss_pred CCcEEEEeccCCCCChhhHHHHHHHHHHhh--ccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecC--hhhHHHH
Q psy177 146 KDKLIIALQDYESFPCSILNEFLLILHEYL--VTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQP--SIESLNL 221 (608)
Q Consensus 146 ~~~LVIileD~EsFd~~VL~DlI~llSs~~--~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~--~~~~l~~ 221 (608)
+.+||+|+++|+.|-+..=|-++.=+=.-. .+-|++ |+|++|..+.++ +|-+.|-++..-++..+.+ +-.-...
T Consensus 136 ~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Pic-iig~Ttrld~lE-~LEKRVKSRFshr~I~m~~~~~l~~yv~ 213 (408)
T KOG2228|consen 136 SGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPIC-IIGVTTRLDILE-LLEKRVKSRFSHRVIFMLPSLPLGDYVD 213 (408)
T ss_pred CceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeE-EEEeeccccHHH-HHHHHHHhhcccceeeccCCCChHHHHH
Confidence 378999999999999988776665442222 378864 669999865443 3444455555544222222 2333445
Q ss_pred HHHHHhhCC
Q psy177 222 ITDNIILNN 230 (608)
Q Consensus 222 I~~~~l~~~ 230 (608)
++++++-=|
T Consensus 214 l~r~ll~v~ 222 (408)
T KOG2228|consen 214 LYRKLLSVP 222 (408)
T ss_pred HHHHHhcCC
Confidence 677766333
No 21
>CHL00195 ycf46 Ycf46; Provisional
Probab=46.34 E-value=2.8e+02 Score=31.80 Aligned_cols=123 Identities=13% Similarity=0.175 Sum_probs=82.0
Q ss_pred hHHHHHHHHhhCCCCcEEEEeccCCCC--ChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceee
Q psy177 133 FLNFQDYYNEIGCKDKLIIALQDYESF--PCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTF 210 (608)
Q Consensus 133 l~~L~~Wy~~~~~~~~LVIileD~EsF--d~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F 210 (608)
+++|. |.+......|-|++++||.-| ++.|...|-.+...+...=+.++++|= .-.+|.+.-..+-.-.|
T Consensus 68 ~~al~-~i~~~~~~~~~~~vl~d~h~~~~~~~~~r~l~~l~~~~~~~~~~~i~~~~-------~~~~p~el~~~~~~~~~ 139 (489)
T CHL00195 68 LQALE-FIEKLTPETPALFLLKDFNRFLNDISISRKLRNLSRILKTQPKTIIIIAS-------ELNIPKELKDLITVLEF 139 (489)
T ss_pred HHHHH-HHHhcCCCCCcEEEEecchhhhcchHHHHHHHHHHHHHHhCCCEEEEEcC-------CCCCCHHHHhceeEEee
Confidence 56775 666654334899999999999 777877776666555554444455442 23467777776655567
Q ss_pred eecChhhHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHh
Q psy177 211 YNQPSIESLNLITDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICILK 268 (608)
Q Consensus 211 ~~~~~~~~l~~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M~ 268 (608)
.+|...++-+ +++.+.- ..+..+.+..++.|.. ..+..|....-+.+..++..
T Consensus 140 ~lP~~~ei~~-~l~~~~~--~~~~~~~~~~~~~l~~--~~~gls~~~~~~~~~~~~~~ 192 (489)
T CHL00195 140 PLPTESEIKK-ELTRLIK--SLNIKIDSELLENLTR--ACQGLSLERIRRVLSKIIAT 192 (489)
T ss_pred cCcCHHHHHH-HHHHHHH--hcCCCCCHHHHHHHHH--HhCCCCHHHHHHHHHHHHHH
Confidence 7777666544 4566543 3356688888887777 34578888888888876654
No 22
>PRK08727 hypothetical protein; Validated
Probab=45.76 E-value=2.2e+02 Score=28.76 Aligned_cols=112 Identities=10% Similarity=0.006 Sum_probs=68.1
Q ss_pred cEEEEeccCCCCCh--hhHHHHHHHHHH-hhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecC-hhhHHHHHH
Q psy177 148 KLIIALQDYESFPC--SILNEFLLILHE-YLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQP-SIESLNLIT 223 (608)
Q Consensus 148 ~LVIileD~EsFd~--~VL~DlI~llSs-~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~-~~~~l~~I~ 223 (608)
.-+|++.|++.+.. .--..+..++.. +....+ +|+--..+++.+...+|.=..++-.+..|.+++ ..+-+..++
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~--vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL 171 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGIT--LLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVL 171 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCe--EEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHH
Confidence 45899999998753 222334444433 223344 444333467777776665554443444667764 455666677
Q ss_pred HHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHH
Q psy177 224 DNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVK 263 (608)
Q Consensus 224 ~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK 263 (608)
++..... .+.++..++.+|.+++...-.++-+.+..+.
T Consensus 172 ~~~a~~~--~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~ 209 (233)
T PRK08727 172 RERAQRR--GLALDEAAIDWLLTHGERELAGLVALLDRLD 209 (233)
T ss_pred HHHHHHc--CCCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 7655543 4899999999999997755555545555543
No 23
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=43.79 E-value=1.7e+02 Score=28.12 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=59.2
Q ss_pred CChHHHHHHHHhhCC----CCcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhccc
Q psy177 131 YDFLNFQDYYNEIGC----KDKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMK 206 (608)
Q Consensus 131 yDl~~L~~Wy~~~~~----~~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~ 206 (608)
...+.+..+...... ..+-||+|.+.+.++....+.|+..+-..-+..-|+|+ ++.+ ..+++...++..
T Consensus 76 ~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~---~~~~----~~l~~~i~sr~~ 148 (188)
T TIGR00678 76 IKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILI---TPSP----EKLLPTIRSRCQ 148 (188)
T ss_pred CCHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEE---ECCh----HhChHHHHhhcE
Confidence 344566555543221 25668899999999999999888777553333333333 3333 456666777666
Q ss_pred ceeeeecChhhHHHHHHHHHhhCCCCCcccCHHHHHHHHHHH
Q psy177 207 IHTFYNQPSIESLNLITDNIILNNKFPLILHHTILEFLIDNF 248 (608)
Q Consensus 207 ~~~F~~~~~~~~l~~I~~~~l~~~~~p~~Lg~~v~~~Lld~F 248 (608)
.-.|.-....+. ..++.+. .+.+..++.+.++.
T Consensus 149 ~~~~~~~~~~~~-~~~l~~~--------gi~~~~~~~i~~~~ 181 (188)
T TIGR00678 149 VLPFPPLSEEAL-LQWLIRQ--------GISEEAAELLLALA 181 (188)
T ss_pred EeeCCCCCHHHH-HHHHHHc--------CCCHHHHHHHHHHc
Confidence 555554555544 3344443 14566666665543
No 24
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=39.02 E-value=3.3e+02 Score=27.90 Aligned_cols=115 Identities=14% Similarity=0.099 Sum_probs=67.6
Q ss_pred EEEEeccCCCCC--------hhhHHHHHHHHHHhhccCCeEEEE-ccccChHHHhhhccHHHHhcccceeeeecC-hhhH
Q psy177 149 LIIALQDYESFP--------CSILNEFLLILHEYLVTLPFILIL-GVSTSPSIIHSTLNYDVISTMKIHTFYNQP-SIES 218 (608)
Q Consensus 149 LVIileD~EsFd--------~~VL~DlI~llSs~~~~IP~vlIf-GIATsv~~~~~~Lp~s~~~~L~~~~F~~~~-~~~~ 218 (608)
-||+|.++..+. ...+..|+..+..+... +++|+ |..+..+.+. .+++...+++ ...+.+++ +.+-
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~--~~vila~~~~~~~~~~-~~~p~L~sRf-~~~i~f~~~~~~e 182 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNE--FVLILAGYSDEMDYFL-SLNPGLRSRF-PISIDFPDYTVEE 182 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCC--EEEEecCCcchhHHHH-hcChHHHhcc-ceEEEECCCCHHH
Confidence 488999998764 45666677666665433 34443 3332233333 3566777776 33455554 3344
Q ss_pred HHHHHHHHhhCCCCCcccCHHHHHHHHHHHh-------hcccCHHHHHHHHHHHHHhh
Q psy177 219 LNLITDNIILNNKFPLILHHTILEFLIDNFL-------FYDFSLHTFMKGVKICILKH 269 (608)
Q Consensus 219 l~~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~-------~~d~Sv~~fi~~LK~a~M~H 269 (608)
+..|++..+.. ..+.+...++..|.+... ......-.....+.-|+..+
T Consensus 183 l~~Il~~~~~~--~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~ 238 (261)
T TIGR02881 183 LMEIAERMVKE--REYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQ 238 (261)
T ss_pred HHHHHHHHHHH--cCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence 55566666644 356788999988877642 23455555666666666544
No 25
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=38.37 E-value=3.4e+02 Score=27.94 Aligned_cols=108 Identities=13% Similarity=0.078 Sum_probs=70.7
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
.+-||++.+.+.+.......|..++..+.....|+++. +.. ..+.....++...-.|.-.+..+. ..+++..
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~---~~~----~~l~~~l~sr~~~~~~~~l~~~ei-~~~l~~~ 173 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSC---NYS----SKIIDPIQSRCAVFRFSPLKKEAV-AERLRYI 173 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEe---CCc----cccchhHHHHhheeeeCCCCHHHH-HHHHHHH
Confidence 46789999999999988888888887777666555532 222 223333444444444554444443 4556665
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
+... .+.+.+..+..|.++ ...++...+..|+.+..
T Consensus 174 ~~~~--~~~i~~~al~~l~~~---~~gd~r~~~~~l~~~~~ 209 (319)
T PRK00440 174 AENE--GIEITDDALEAIYYV---SEGDMRKAINALQAAAA 209 (319)
T ss_pred HHHc--CCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 5544 356899999999875 46788888888876554
No 26
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=37.30 E-value=2.2e+02 Score=34.83 Aligned_cols=147 Identities=8% Similarity=0.098 Sum_probs=95.7
Q ss_pred ccccCCChH-HHHHHHHhhCCCCcEEEEeccCCCCChhhHHHHHHHHHHhh------ccC---CeEEEEc--ccc-----
Q psy177 126 LKKTHYDFL-NFQDYYNEIGCKDKLIIALQDYESFPCSILNEFLLILHEYL------VTL---PFILILG--VST----- 188 (608)
Q Consensus 126 ~~~~~yDl~-~L~~Wy~~~~~~~~LVIileD~EsFd~~VL~DlI~llSs~~------~~I---P~vlIfG--IAT----- 188 (608)
++|..|+-. .|...+++ +|.=||+|+++|-.++.|.+.|+.++.... ..+ .-++||. +..
T Consensus 649 ~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~ 725 (852)
T TIGR03345 649 PGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMA 725 (852)
T ss_pred CCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHH
Confidence 355555432 34444443 366799999999999999999999997654 011 1233331 110
Q ss_pred ---------C--------hHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHHhhCC--------CCCcccCHHHHHH
Q psy177 189 ---------S--------PSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNIILNN--------KFPLILHHTILEF 243 (608)
Q Consensus 189 ---------s--------v~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~l~~~--------~~p~~Lg~~v~~~ 243 (608)
. -..+...+++..++++.+-.|.-- +.+-+.+|++..+... ...+.+.+.+..+
T Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pL-s~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~ 804 (852)
T TIGR03345 726 LCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPL-DDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEH 804 (852)
T ss_pred hccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCC-CHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHH
Confidence 0 124556788999999987666633 4555566666554331 4568999999999
Q ss_pred HHHHHhhcccCHHHHHHHHHHHHHhhhhcCchhhhhhc
Q psy177 244 LIDNFLFYDFSLHTFMKGVKICILKHISMNNINALCYN 281 (608)
Q Consensus 244 Lld~F~~~d~Sv~~fi~~LK~a~M~HFy~nPLSvL~~~ 281 (608)
|.+.-....+..-.+.+.|+--+ .+|||-.+-.
T Consensus 805 La~~g~~~~~GAR~L~r~Ie~~i-----~~~la~~~l~ 837 (852)
T TIGR03345 805 IVARCTEVESGARNIDAILNQTL-----LPELSRQILE 837 (852)
T ss_pred HHHHcCCCCCChHHHHHHHHHHH-----HHHHHHHHHh
Confidence 99988777777766666665433 4788876654
No 27
>PLN03025 replication factor C subunit; Provisional
Probab=37.09 E-value=1.9e+02 Score=30.61 Aligned_cols=108 Identities=16% Similarity=0.114 Sum_probs=70.1
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
.+-||++.|.+.+...--+-|..++-.+.....|+|+.. ..+ .+.....++...-.|.-.+..+... .++.+
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n---~~~----~i~~~L~SRc~~i~f~~l~~~~l~~-~L~~i 170 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACN---TSS----KIIEPIQSRCAIVRFSRLSDQEILG-RLMKV 170 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeC---Ccc----ccchhHHHhhhcccCCCCCHHHHHH-HHHHH
Confidence 367899999999998876666666655555555555422 221 3344455555544555555544443 44444
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
.... .+.+.+.++..|.++ .+.++...+..|+.+++
T Consensus 171 ~~~e--gi~i~~~~l~~i~~~---~~gDlR~aln~Lq~~~~ 206 (319)
T PLN03025 171 VEAE--KVPYVPEGLEAIIFT---ADGDMRQALNNLQATHS 206 (319)
T ss_pred HHHc--CCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHh
Confidence 4433 467889999998875 46899999999997765
No 28
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=36.52 E-value=3e+02 Score=28.67 Aligned_cols=105 Identities=17% Similarity=0.116 Sum_probs=64.4
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
.+-||++.|.+.++....+.|..++........ +|+ +++.+. .+.....++...-.|.-.+ ..-+..++...
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~--~Il-~~~~~~----~~~~~L~sr~~~v~~~~~~-~~~~~~~l~~~ 196 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCR--FII-ATRQPS----KLIPPIRSRCLPLFFRAPT-DDELVDVLESI 196 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCe--EEE-EeCChh----hCchhhcCCceEEEecCCC-HHHHHHHHHHH
Confidence 345899999999998887777776665544433 333 222222 2333334443333333333 34456666665
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHH
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKI 264 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~ 264 (608)
+... ++.+.+..++.|..+. ..++...+..++.
T Consensus 197 ~~~~--~~~~~~~al~~l~~~~---~gdlr~l~~~l~~ 229 (337)
T PRK12402 197 AEAE--GVDYDDDGLELIAYYA---GGDLRKAILTLQT 229 (337)
T ss_pred HHHc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 5544 3568999999999876 5778887777664
No 29
>PRK13342 recombination factor protein RarA; Reviewed
Probab=35.04 E-value=4.1e+02 Score=29.36 Aligned_cols=110 Identities=12% Similarity=0.161 Sum_probs=69.9
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
.+.||+|.+.+.|+.....-|+..+.. -.+ +++|..|. .....++....++...-.|...+. +-+..+++..
T Consensus 92 ~~~vL~IDEi~~l~~~~q~~LL~~le~----~~i-ilI~att~--n~~~~l~~aL~SR~~~~~~~~ls~-e~i~~lL~~~ 163 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQQDALLPHVED----GTI-TLIGATTE--NPSFEVNPALLSRAQVFELKPLSE-EDIEQLLKRA 163 (413)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhhc----CcE-EEEEeCCC--ChhhhccHHHhccceeeEeCCCCH-HHHHHHHHHH
Confidence 578999999999998777666665543 223 34454443 222345667777765545554443 4445566666
Q ss_pred hhCCCCCc-ccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 227 ILNNKFPL-ILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 227 l~~~~~p~-~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
+.....++ .+.+.+++.|... .+..+...+..|+.+..
T Consensus 164 l~~~~~~~i~i~~~al~~l~~~---s~Gd~R~aln~Le~~~~ 202 (413)
T PRK13342 164 LEDKERGLVELDDEALDALARL---ANGDARRALNLLELAAL 202 (413)
T ss_pred HHHhhcCCCCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 54422234 7888888888764 36788888888887764
No 30
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.49 E-value=3e+02 Score=31.27 Aligned_cols=107 Identities=11% Similarity=0.111 Sum_probs=71.8
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
.+-||++.+.+.|....++.|+..+...... ++|| +.+|.++ .+++...++...-.|.-.+..+ +..++++.
T Consensus 117 ~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~--vv~I-lattn~~----kl~~~L~SR~~vv~f~~l~~~e-l~~~L~~i 188 (472)
T PRK14962 117 KYKVYIIDEVHMLTKEAFNALLKTLEEPPSH--VVFV-LATTNLE----KVPPTIISRCQVIEFRNISDEL-IIKRLQEV 188 (472)
T ss_pred CeEEEEEEChHHhHHHHHHHHHHHHHhCCCc--EEEE-EEeCChH----hhhHHHhcCcEEEEECCccHHH-HHHHHHHH
Confidence 4569999999999998888888777654332 3333 3444443 4677777777665555555544 44455555
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICI 266 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~ 266 (608)
.... .+.+.+.++..|.++ .+.++...+..|..++
T Consensus 189 ~~~e--gi~i~~eal~~Ia~~---s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 189 AEAE--GIEIDREALSFIAKR---ASGGLRDALTMLEQVW 223 (472)
T ss_pred HHHc--CCCCCHHHHHHHHHH---hCCCHHHHHHHHHHHH
Confidence 5433 467899999999885 4578888888887644
No 31
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=32.96 E-value=3.2e+02 Score=30.65 Aligned_cols=112 Identities=12% Similarity=0.097 Sum_probs=73.0
Q ss_pred cEEEEeccCCCCC--hhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhccc-ceeeeecCh-hhHHHHHH
Q psy177 148 KLIIALQDYESFP--CSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMK-IHTFYNQPS-IESLNLIT 223 (608)
Q Consensus 148 ~LVIileD~EsFd--~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~-~~~F~~~~~-~~~l~~I~ 223 (608)
+=|+++.|...+- ...-.+|+.++......-. .+|++-..++..+....+ ...+++. +-.+.+.++ .+..-.|+
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k-~iIitsd~~p~~l~~l~~-rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGK-QIVICSDREPQKLSEFQD-RLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCC-eEEEECCCCHHHHHHHHH-HHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 4578899999774 2345677777766554322 355555566777766555 4444454 555566543 34666677
Q ss_pred HHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHH
Q psy177 224 DNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVK 263 (608)
Q Consensus 224 ~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK 263 (608)
++..... .+.++..++.+|.+++...--.+.+.+..|.
T Consensus 273 ~~~~~~~--~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~ 310 (440)
T PRK14088 273 RKMLEIE--HGELPEEVLNFVAENVDDNLRRLRGAIIKLL 310 (440)
T ss_pred HHHHHhc--CCCCCHHHHHHHHhccccCHHHHHHHHHHHH
Confidence 7766543 4779999999999999776666666666553
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=32.76 E-value=2.9e+02 Score=28.58 Aligned_cols=97 Identities=9% Similarity=0.063 Sum_probs=60.2
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhc---------------cCCeEEEEccccChHHHhhhccHHHHhcccc-eee
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLV---------------TLPFILILGVSTSPSIIHSTLNYDVISTMKI-HTF 210 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~---------------~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~-~~F 210 (608)
.+-|++|.|++.+++.....|..++..+.. .+|-+.++|..|-. ..++....+++.. ..|
T Consensus 81 ~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~----~~l~~~l~sR~~~~~~l 156 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA----GMLTSPLRDRFGIILRL 156 (305)
T ss_pred cCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc----cccCHHHHhhcceEEEe
Confidence 467999999999999988877777765552 23333444554443 3455556666632 234
Q ss_pred eecChhhHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHhh
Q psy177 211 YNQPSIESLNLITDNIILNNKFPLILHHTILEFLIDNFLF 250 (608)
Q Consensus 211 ~~~~~~~~l~~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~ 250 (608)
...+..+ +..++++.... ....+.+.++..|......
T Consensus 157 ~~l~~~e-~~~il~~~~~~--~~~~~~~~al~~ia~~~~G 193 (305)
T TIGR00635 157 EFYTVEE-LAEIVSRSAGL--LNVEIEPEAALEIARRSRG 193 (305)
T ss_pred CCCCHHH-HHHHHHHHHHH--hCCCcCHHHHHHHHHHhCC
Confidence 4444444 45566655543 3567889999888876443
No 33
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=31.90 E-value=1.2e+02 Score=27.04 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=41.3
Q ss_pred HHHHHhhCCCCcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccC
Q psy177 137 QDYYNEIGCKDKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTS 189 (608)
Q Consensus 137 ~~Wy~~~~~~~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATs 189 (608)
..|..+.+. +.+||-+.+.+-+|+..+.-|+..+..+...=.-.++.|+.-.
T Consensus 36 ~~~~~~~~~-~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i~p~ 87 (117)
T COG1366 36 LEVIAASGA-RGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGIQPE 87 (117)
T ss_pred HHHHhcCCC-cEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 334444443 4499999999999999999999999999988777777787544
No 34
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=31.40 E-value=4.2e+02 Score=27.88 Aligned_cols=107 Identities=19% Similarity=0.240 Sum_probs=65.6
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
.+-||++++.+.+.....+.|+..+..... ..+|||. ++.++ .+++...++...-.|.-.+ ..-+..++...
T Consensus 117 ~~~vviidea~~l~~~~~~~Ll~~le~~~~--~~~lIl~-~~~~~----~l~~~l~sr~~~~~~~~~~-~~~l~~~l~~~ 188 (355)
T TIGR02397 117 KYKVYIIDEVHMLSKSAFNALLKTLEEPPE--HVVFILA-TTEPH----KIPATILSRCQRFDFKRIP-LEDIVERLKKI 188 (355)
T ss_pred CceEEEEeChhhcCHHHHHHHHHHHhCCcc--ceeEEEE-eCCHH----HHHHHHHhheeEEEcCCCC-HHHHHHHHHHH
Confidence 345888999999999888888877754322 2444443 34444 3344455554444454333 34445556655
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICI 266 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~ 266 (608)
+... +..+.+..++.|.++. ..++...++.++-+.
T Consensus 189 ~~~~--g~~i~~~a~~~l~~~~---~g~~~~a~~~lekl~ 223 (355)
T TIGR02397 189 LDKE--GIKIEDEALELIARAA---DGSLRDALSLLDQLI 223 (355)
T ss_pred HHHc--CCCCCHHHHHHHHHHc---CCChHHHHHHHHHHH
Confidence 5443 3578899999998765 456777777665443
No 35
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=30.77 E-value=2.9e+02 Score=30.20 Aligned_cols=109 Identities=15% Similarity=0.149 Sum_probs=68.0
Q ss_pred EEEEeccCCCCChh--hHHHHHHHHHHh-hccCCeEEEEccccChHHHhhhccHHHHhccc-ceeeeecC-hhhHHHHHH
Q psy177 149 LIIALQDYESFPCS--ILNEFLLILHEY-LVTLPFILILGVSTSPSIIHSTLNYDVISTMK-IHTFYNQP-SIESLNLIT 223 (608)
Q Consensus 149 LVIileD~EsFd~~--VL~DlI~llSs~-~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~-~~~F~~~~-~~~~l~~I~ 223 (608)
=|++|.|++..... .-..|..++... ...-+ +|++-..+++.+....+ ...++|. +-...+++ ..+..-.|+
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~--iiits~~~p~~l~~l~~-~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQ--IVLTSDRPPKELPGLEE-RLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCC--EEEecCCCHHHHhhhhh-hhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 47889999987653 445677777543 33444 45555555677766444 4555554 34455543 334455566
Q ss_pred HHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHH
Q psy177 224 DNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGV 262 (608)
Q Consensus 224 ~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~L 262 (608)
++.+... ++.++..++.+|.+++...--.+.+.+..|
T Consensus 278 ~~~~~~~--~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l 314 (405)
T TIGR00362 278 QKKAEEE--GLELPDEVLEFIAKNIRSNVRELEGALNRL 314 (405)
T ss_pred HHHHHHc--CCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6665553 578999999999988866555555555554
No 36
>KOG1514|consensus
Probab=30.40 E-value=94 Score=37.08 Aligned_cols=92 Identities=11% Similarity=0.248 Sum_probs=68.7
Q ss_pred CCcEEEEeccCCCCCh---hhHHHHHHHHHHhhc--cCCeEEEEccccChHHHhhhccHHHHhcccceeeeecC-hhhHH
Q psy177 146 KDKLIIALQDYESFPC---SILNEFLLILHEYLV--TLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQP-SIESL 219 (608)
Q Consensus 146 ~~~LVIileD~EsFd~---~VL~DlI~llSs~~~--~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~-~~~~l 219 (608)
+++.||.+...+..-. .||.+|. .|-. .-+ .+|+|||-+.+..++.|...+.++|-.++..+++ ...-+
T Consensus 507 ~~~~VvLiDElD~Lvtr~QdVlYn~f----dWpt~~~sK-Lvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qL 581 (767)
T KOG1514|consen 507 RSTTVVLIDELDILVTRSQDVLYNIF----DWPTLKNSK-LVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQL 581 (767)
T ss_pred CCCEEEEeccHHHHhcccHHHHHHHh----cCCcCCCCc-eEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHH
Confidence 3899999999997654 7888877 4543 223 3677999999999999999999999999999887 56677
Q ss_pred HHHHHHHhhCCCCCcccCHHHHHHHH
Q psy177 220 NLITDNIILNNKFPLILHHTILEFLI 245 (608)
Q Consensus 220 ~~I~~~~l~~~~~p~~Lg~~v~~~Ll 245 (608)
.+|+..=+.+. ..+.+++.++..
T Consensus 582 q~Ii~~RL~~~---~~f~~~aielva 604 (767)
T KOG1514|consen 582 QEIISARLKGL---DAFENKAIELVA 604 (767)
T ss_pred HHHHHHhhcch---hhcchhHHHHHH
Confidence 77877765555 334444444443
No 37
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=29.48 E-value=4.2e+02 Score=29.91 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=69.9
Q ss_pred cEEEEeccCCCCCh--hhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcc-cceeeeecCh-hhHHHHHH
Q psy177 148 KLIIALQDYESFPC--SILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTM-KIHTFYNQPS-IESLNLIT 223 (608)
Q Consensus 148 ~LVIileD~EsFd~--~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L-~~~~F~~~~~-~~~l~~I~ 223 (608)
.=|++|.|+..+.. ..-.+|..++......-- .+|++-..++..+.. +.....+++ .|-.+.+.++ .+-.-.|+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k-~IIlts~~~p~~l~~-l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGK-LIVISSTCAPQDLKA-MEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCC-cEEEecCCCHHHHhh-hHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 34788899998864 466778887765443221 344444566666664 555555555 3667777653 45555666
Q ss_pred HHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHH
Q psy177 224 DNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGV 262 (608)
Q Consensus 224 ~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~L 262 (608)
++-.... .+.++..++.+|..++-..--.+.+.+..|
T Consensus 281 ~~k~~~~--~~~l~~evl~~la~~~~~dir~L~g~l~~l 317 (445)
T PRK12422 281 ERKAEAL--SIRIEETALDFLIEALSSNVKSLLHALTLL 317 (445)
T ss_pred HHHHHHc--CCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6655543 478999999999998765444444444433
No 38
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=29.26 E-value=4.7e+02 Score=25.49 Aligned_cols=110 Identities=12% Similarity=0.090 Sum_probs=65.9
Q ss_pred EEEEeccCCCCChhh--HHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhccc-ceeeeecChh-hHHHHHHH
Q psy177 149 LIIALQDYESFPCSI--LNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMK-IHTFYNQPSI-ESLNLITD 224 (608)
Q Consensus 149 LVIileD~EsFd~~V--L~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~-~~~F~~~~~~-~~l~~I~~ 224 (608)
-+|+|.|++..+... ...+..++..+.. .+..+|++-.+++..+. .......+++. +..+.+++.. +-...+++
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~-~~~~iIits~~~~~~~~-~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~ 169 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVRE-AGGRLLIAGRAAPAQLP-LRLPDLRTRLAWGLVFQLPPLSDEEKIAALQ 169 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHH-cCCeEEEECCCChHHCC-cccHHHHHHHhcCeeEecCCCCHHHHHHHHH
Confidence 378899999998754 7777777765433 22245554444443332 11145555554 4567777632 33334444
Q ss_pred HHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHH
Q psy177 225 NIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKIC 265 (608)
Q Consensus 225 ~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a 265 (608)
.... .....+.+.++++|..+ ...++..+...|+-+
T Consensus 170 ~~~~--~~~~~~~~~~l~~L~~~---~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 170 SRAA--RRGLQLPDEVADYLLRH---GSRDMGSLMALLDAL 205 (226)
T ss_pred HHHH--HcCCCCCHHHHHHHHHh---ccCCHHHHHHHHHHH
Confidence 4332 23567999999999984 566677776666553
No 39
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=28.68 E-value=4.5e+02 Score=32.16 Aligned_cols=147 Identities=13% Similarity=0.175 Sum_probs=91.2
Q ss_pred ccccCCCh-HHHHHHHHhhCCCCcEEEEeccCCCCChhhHHHHHHHHHHhh------ccCCeE---EEEccccCh-----
Q psy177 126 LKKTHYDF-LNFQDYYNEIGCKDKLIIALQDYESFPCSILNEFLLILHEYL------VTLPFI---LILGVSTSP----- 190 (608)
Q Consensus 126 ~~~~~yDl-~~L~~Wy~~~~~~~~LVIileD~EsFd~~VL~DlI~llSs~~------~~IP~v---lIfGIATsv----- 190 (608)
+++..|+- ..|....+. +|.-||+|+++|..++.|.+.|+.++..-. ..+.|. +|+.-....
T Consensus 648 ~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~ 724 (852)
T TIGR03346 648 PGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQE 724 (852)
T ss_pred CCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhh
Confidence 45566642 333333332 245699999999999999999999996542 123333 333211101
Q ss_pred ---------------HHHhhhccHHHHhcccceeeeecChhhHHHHHHHHHhhC-------CCCCcccCHHHHHHHHHHH
Q psy177 191 ---------------SIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNIILN-------NKFPLILHHTILEFLIDNF 248 (608)
Q Consensus 191 ---------------~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~l~~-------~~~p~~Lg~~v~~~Lld~F 248 (608)
+.+.+.+++..+.+|..-..-.+...+.+..|++..+.. ....+.+++.+..+|.++-
T Consensus 725 ~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~ 804 (852)
T TIGR03346 725 LAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAG 804 (852)
T ss_pred hcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhC
Confidence 125666778888888644444455666667777665542 2336889999999999976
Q ss_pred hhcccCHHHHHHHHHHHHHhhhhcCchhhhhh
Q psy177 249 LFYDFSLHTFMKGVKICILKHISMNNINALCY 280 (608)
Q Consensus 249 ~~~d~Sv~~fi~~LK~a~M~HFy~nPLSvL~~ 280 (608)
++..++...+-+.++=.+ .+|++-.+-
T Consensus 805 ~~~~~gaR~L~~~i~~~i-----~~~l~~~~l 831 (852)
T TIGR03346 805 YDPVYGARPLKRAIQREI-----ENPLAKKIL 831 (852)
T ss_pred CCCCCCchhHHHHHHHHH-----HHHHHHHHH
Confidence 666667666666555443 366665554
No 40
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=28.45 E-value=2.9e+02 Score=30.83 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=73.3
Q ss_pred cEEEEeccCCCCCh--hhHHHHHHHHHHhhc-cCCeEEEEccccChHHHhhhccHHHHhccc-ceeeeecC-hhhHHHHH
Q psy177 148 KLIIALQDYESFPC--SILNEFLLILHEYLV-TLPFILILGVSTSPSIIHSTLNYDVISTMK-IHTFYNQP-SIESLNLI 222 (608)
Q Consensus 148 ~LVIileD~EsFd~--~VL~DlI~llSs~~~-~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~-~~~F~~~~-~~~~l~~I 222 (608)
.-|++|.|+..+.. ...++|..++..... .-+ +|++-..+++.+...- ....+++. +-.+.+.+ ..+..-.|
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~--iiits~~~p~~l~~l~-~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQ--IVLTSDRPPKELPGLE-ERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCc--EEEECCCCHHHHHHHH-HHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 45888999998855 356778888765544 344 4445555667666633 44666664 44566654 44556667
Q ss_pred HHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHH
Q psy177 223 TDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVK 263 (608)
Q Consensus 223 ~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK 263 (608)
+++..... ++.+.+.++.+|.+++...--.+.+.+..|.
T Consensus 289 l~~~~~~~--~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~ 327 (450)
T PRK00149 289 LKKKAEEE--GIDLPDEVLEFIAKNITSNVRELEGALNRLI 327 (450)
T ss_pred HHHHHHHc--CCCCCHHHHHHHHcCcCCCHHHHHHHHHHHH
Confidence 77766543 6789999999999998765556666666554
No 41
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.97 E-value=6.9e+02 Score=29.15 Aligned_cols=107 Identities=15% Similarity=0.147 Sum_probs=72.5
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
.+-||||++.+.++....+.|+..+-+.-..+-|+| ++|. .++ ++....++...-.|.-.+..++.. .+..+
T Consensus 119 ~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL---~Ttd---~~k-il~tI~SRc~~~~f~~Ls~~eI~~-~L~~i 190 (546)
T PRK14957 119 RYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFIL---ATTD---YHK-IPVTILSRCIQLHLKHISQADIKD-QLKII 190 (546)
T ss_pred CcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEE---EECC---hhh-hhhhHHHheeeEEeCCCCHHHHHH-HHHHH
Confidence 466999999999999999999988877554444444 3343 344 444477777666666665555433 34444
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICI 266 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~ 266 (608)
+... ...+.+..+..|.... +.|+...+..|.-++
T Consensus 191 l~~e--gi~~e~~Al~~Ia~~s---~GdlR~alnlLek~i 225 (546)
T PRK14957 191 LAKE--NINSDEQSLEYIAYHA---KGSLRDALSLLDQAI 225 (546)
T ss_pred HHHc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 4433 3678889888887654 688888888887554
No 42
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=26.25 E-value=7.9e+02 Score=27.70 Aligned_cols=112 Identities=10% Similarity=0.154 Sum_probs=70.9
Q ss_pred cEEEEeccCCCCC--hhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhccc-ceeeeecC-hhhHHHHHH
Q psy177 148 KLIIALQDYESFP--CSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMK-IHTFYNQP-SIESLNLIT 223 (608)
Q Consensus 148 ~LVIileD~EsFd--~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~-~~~F~~~~-~~~~l~~I~ 223 (608)
.-|+++.|+..+. ......|..++.....+=.-+++ .=..+++.+. .|.....+++. |-.+.+.+ ..+-..+++
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIl-tsd~~P~~l~-~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFF-SSDKSPELLN-GFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEE-ECCCCHHHHh-hccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 4578899998887 56778888888776654332333 2223455554 45555555554 66666665 455666677
Q ss_pred HHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHH
Q psy177 224 DNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKG 261 (608)
Q Consensus 224 ~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~ 261 (608)
++.+......+.+...++.+|.+++...--.+.+.+..
T Consensus 285 ~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 285 KKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 76666544334799999999999876544444444443
No 43
>KOG0502|consensus
Probab=26.25 E-value=25 Score=36.29 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=16.0
Q ss_pred HHHHhhhcCCcccHHHHH
Q psy177 586 AYKLHLESATMINIHDWL 603 (608)
Q Consensus 586 lYkLylEsG~LINlyDW~ 603 (608)
+-+|.+++|.-||+|||=
T Consensus 208 iV~lLL~r~vdVNvyDwN 225 (296)
T KOG0502|consen 208 IVELLLTREVDVNVYDWN 225 (296)
T ss_pred HHHHHHhcCCCcceeccC
Confidence 458999999999999993
No 44
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=26.22 E-value=2.7e+02 Score=30.04 Aligned_cols=87 Identities=15% Similarity=0.159 Sum_probs=55.9
Q ss_pred cCCChHHHHHHHHhhC-----CCCcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHh
Q psy177 129 THYDFLNFQDYYNEIG-----CKDKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVIS 203 (608)
Q Consensus 129 ~~yDl~~L~~Wy~~~~-----~~~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~ 203 (608)
....++.++....... .+.+| |++++++.+|+.--+.|+.++-+.... .+||+ +++.++ .++....+
T Consensus 91 ~~I~id~iR~l~~~~~~~p~~~~~kV-~iiEp~~~Ld~~a~naLLk~LEep~~~--~~~Il-vth~~~----~ll~ti~S 162 (325)
T PRK08699 91 LQIKIDAVREIIDNVYLTSVRGGLRV-ILIHPAESMNLQAANSLLKVLEEPPPQ--VVFLL-VSHAAD----KVLPTIKS 162 (325)
T ss_pred CCcCHHHHHHHHHHHhhCcccCCceE-EEEechhhCCHHHHHHHHHHHHhCcCC--CEEEE-EeCChH----hChHHHHH
Confidence 3456666666544322 22444 466999999999999999999887543 44554 666654 45555666
Q ss_pred cccceeeeecChhhHHHHHH
Q psy177 204 TMKIHTFYNQPSIESLNLIT 223 (608)
Q Consensus 204 ~L~~~~F~~~~~~~~l~~I~ 223 (608)
+...-.|..++..+...-+.
T Consensus 163 Rc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 163 RCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred HhhhhcCCCCCHHHHHHHHH
Confidence 66666676666655554443
No 45
>PF10088 DUF2326: Uncharacterized protein conserved in bacteria (DUF2326); InterPro: IPR018760 This domain has no known function.
Probab=25.54 E-value=97 Score=29.24 Aligned_cols=63 Identities=16% Similarity=0.166 Sum_probs=50.7
Q ss_pred hhcccccCCChHHHHHHHHhhCCCCcEEEEecc--CCCCChhhHHHHHHHHHHhhccCCeEEEEcccc
Q psy177 123 EVNLKKTHYDFLNFQDYYNEIGCKDKLIIALQD--YESFPCSILNEFLLILHEYLVTLPFILILGVST 188 (608)
Q Consensus 123 ~~~~~~~~yDl~~L~~Wy~~~~~~~~LVIileD--~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIAT 188 (608)
....+..-|||..+.-|+.... .+=++++| ||+.|+..+..++.+..+|.....+-.|+-|-+
T Consensus 40 ~~~~ki~cfDla~~~~~~~~~~---~~~FLiHDslf~~vD~rq~~~~l~~~~~~~~~~~~QyIvtin~ 104 (140)
T PF10088_consen 40 INYMKIFCFDLALLRLAYTNNT---FPPFLIHDSLFEGVDDRQKANLLNLANEYSEESGFQYIVTINS 104 (140)
T ss_pred ccceeehhHHHHHHHHHHhcCC---CCCEEEeccccccCCHHHHHHHHHHHHHHHhhcCceEEEEEEh
Confidence 3346677799999999988773 34466788 788999999999999999998888888877744
No 46
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.00 E-value=1.2e+03 Score=27.21 Aligned_cols=105 Identities=15% Similarity=0.202 Sum_probs=68.3
Q ss_pred cEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHHh
Q psy177 148 KLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNII 227 (608)
Q Consensus 148 ~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~l 227 (608)
.=|+||++.+.++.+-.+-|+..+-+.-....|+| ++|.+ ..++....++...-.|.-.+..++.. .+..++
T Consensus 120 ~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl---~t~~~----~kl~~tI~SRc~~~~f~~l~~~~i~~-~L~~i~ 191 (576)
T PRK14965 120 YKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIF---ATTEP----HKVPITILSRCQRFDFRRIPLQKIVD-RLRYIA 191 (576)
T ss_pred ceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEE---EeCCh----hhhhHHHHHhhhhhhcCCCCHHHHHH-HHHHHH
Confidence 44788999999999999999988887655444443 33544 35666667666655566555444333 333333
Q ss_pred hCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHH
Q psy177 228 LNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKIC 265 (608)
Q Consensus 228 ~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a 265 (608)
... ...+.+..+..|..+- +.++...++.|.-+
T Consensus 192 ~~e--gi~i~~~al~~la~~a---~G~lr~al~~Ldql 224 (576)
T PRK14965 192 DQE--GISISDAALALVARKG---DGSMRDSLSTLDQV 224 (576)
T ss_pred HHh--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 332 3668888888877643 47788777777543
No 47
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=23.88 E-value=9e+02 Score=26.54 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=74.2
Q ss_pred CcEEEEeccCCCCChh---hHHHHHHHHHHhhccC-CeEEEEccccChHHHhhhccHHHHhccccee--eeecChhhHHH
Q psy177 147 DKLIIALQDYESFPCS---ILNEFLLILHEYLVTL-PFILILGVSTSPSIIHSTLNYDVISTMKIHT--FYNQPSIESLN 220 (608)
Q Consensus 147 ~~LVIileD~EsFd~~---VL~DlI~llSs~~~~I-P~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~--F~~~~~~~~l~ 220 (608)
..+||++.++...-.. +|=.|+. |.... =-+.++||+..... ..+|-..+.+.|.... |.--...++-+
T Consensus 123 ~~~IvvLDEid~L~~~~~~~LY~L~r----~~~~~~~~v~vi~i~n~~~~-~~~ld~rv~s~l~~~~I~F~pY~a~el~~ 197 (366)
T COG1474 123 KTVIVILDEVDALVDKDGEVLYSLLR----APGENKVKVSIIAVSNDDKF-LDYLDPRVKSSLGPSEIVFPPYTAEELYD 197 (366)
T ss_pred CeEEEEEcchhhhccccchHHHHHHh----hccccceeEEEEEEeccHHH-HHHhhhhhhhccCcceeeeCCCCHHHHHH
Confidence 6899999999887766 5544443 33333 23467788777555 8889999999999988 44445666666
Q ss_pred HHHHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Q psy177 221 LITDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICI 266 (608)
Q Consensus 221 ~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~ 266 (608)
-+-+++=.. -.+-.+...++++....--....+.--.|..++-|.
T Consensus 198 Il~~R~~~~-~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~ 242 (366)
T COG1474 198 ILRERVEEG-FSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAG 242 (366)
T ss_pred HHHHHHHhh-ccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 555554322 224467888888888766555555555555555443
No 48
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=21.91 E-value=56 Score=30.59 Aligned_cols=49 Identities=14% Similarity=0.286 Sum_probs=23.7
Q ss_pred HHHHHHHHhhCCC-CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEE
Q psy177 134 LNFQDYYNEIGCK-DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILI 183 (608)
Q Consensus 134 ~~L~~Wy~~~~~~-~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlI 183 (608)
+.+..|....... .|+||+|.|++..++.- .+++..+.......|+++|
T Consensus 136 ~~l~~~l~~~~~~~~~~vlviDd~d~~~~~~-~~~l~~l~~~~~~~~~~vv 185 (185)
T PF13191_consen 136 ELLREILRELAARRKPLVLVIDDLDWADPAS-LDLLRALARRLQNDPLLVV 185 (185)
T ss_dssp HHHHHHHTTS-SE---EEEEEETTTHHHTTH-HHHHHH-------------
T ss_pred HHHHHHHHHHHhCCCeEEEEEeCCCCCCcHH-HHHHHhcccccccccccCC
Confidence 6777776544332 46999999999887655 5555555555555577664
No 49
>PRK04195 replication factor C large subunit; Provisional
Probab=21.66 E-value=7.2e+02 Score=28.04 Aligned_cols=104 Identities=11% Similarity=0.124 Sum_probs=67.6
Q ss_pred CcEEEEeccCCCCCh----hhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHH
Q psy177 147 DKLIIALQDYESFPC----SILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLI 222 (608)
Q Consensus 147 ~~LVIileD~EsFd~----~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I 222 (608)
++-||+|.+++.+.. +.++.|+.++. ....|++++.+- .. ...++...++...-.|..++..+ +..+
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~---~~---~~~~k~Lrsr~~~I~f~~~~~~~-i~~~ 168 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTAND---PY---DPSLRELRNACLMIEFKRLSTRS-IVPV 168 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccC---cc---ccchhhHhccceEEEecCCCHHH-HHHH
Confidence 477899999999976 66777777776 346787776432 11 11222444444444565555544 4445
Q ss_pred HHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHH
Q psy177 223 TDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKI 264 (608)
Q Consensus 223 ~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~ 264 (608)
+..++... ++.+++.++..|.++. ...+...+..|+.
T Consensus 169 L~~i~~~e--gi~i~~eaL~~Ia~~s---~GDlR~ain~Lq~ 205 (482)
T PRK04195 169 LKRICRKE--GIECDDEALKEIAERS---GGDLRSAINDLQA 205 (482)
T ss_pred HHHHHHHc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 66666543 4678899999998864 5678888888876
No 50
>PF14516 AAA_35: AAA-like domain
Probab=21.33 E-value=1.7e+02 Score=31.36 Aligned_cols=30 Identities=13% Similarity=0.369 Sum_probs=26.3
Q ss_pred CcEEEEeccCCCCC--hhhHHHHHHHHHHhhc
Q psy177 147 DKLIIALQDYESFP--CSILNEFLLILHEYLV 176 (608)
Q Consensus 147 ~~LVIileD~EsFd--~~VL~DlI~llSs~~~ 176 (608)
.|||++|.++|+.- +.+..||+.++.+|..
T Consensus 127 ~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~ 158 (331)
T PF14516_consen 127 KPLVLFIDEIDRLFEYPQIADDFFGLLRSWYE 158 (331)
T ss_pred CCEEEEEechhhhccCcchHHHHHHHHHHHHH
Confidence 79999999999655 4788999999999976
No 51
>PRK10865 protein disaggregation chaperone; Provisional
Probab=21.21 E-value=4.2e+02 Score=32.49 Aligned_cols=126 Identities=13% Similarity=0.208 Sum_probs=81.8
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhh------ccCCeE---EEEccccCh----------------------HHHhh
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYL------VTLPFI---LILGVSTSP----------------------SIIHS 195 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~------~~IP~v---lIfGIATsv----------------------~~~~~ 195 (608)
|.-||+|.|+|..++.+.+-|+.++..-. .++.|. +|+ +|+. +...+
T Consensus 670 p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~--TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (857)
T PRK10865 670 PYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIM--TSNLGSDLIQERFGELDYAHMKELVLGVVSH 747 (857)
T ss_pred CCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEE--eCCcchHHHHHhccccchHHHHHHHHHHHcc
Confidence 45799999999999999999999996532 123333 333 2221 23445
Q ss_pred hccHHHHhcc-cceeeeecChhhHHHHHHHHHhhC-------CCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 196 TLNYDVISTM-KIHTFYNQPSIESLNLITDNIILN-------NKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 196 ~Lp~s~~~~L-~~~~F~~~~~~~~l~~I~~~~l~~-------~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
.+.+..+.++ .+..|.-. ..+-+..|++..+.. .+.++.+++.++.+|.++=.+..++.-.+-+.|+--++
T Consensus 748 ~f~PELlnRld~iivF~PL-~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~ 826 (857)
T PRK10865 748 NFRPEFINRIDEVVVFHPL-GEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIE 826 (857)
T ss_pred cccHHHHHhCCeeEecCCC-CHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHH
Confidence 6777888888 44444443 344566666655543 13467899999999998766666776666666655443
Q ss_pred hhhhcCchhhhhh
Q psy177 268 KHISMNNINALCY 280 (608)
Q Consensus 268 ~HFy~nPLSvL~~ 280 (608)
+|+|-.+-
T Consensus 827 -----~~la~~iL 834 (857)
T PRK10865 827 -----NPLAQQIL 834 (857)
T ss_pred -----HHHHHHHH
Confidence 66665443
Done!