Query psy177
Match_columns 608
No_of_seqs 132 out of 202
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 20:45:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fnn_A CDC6P, cell division co 90.1 2.4 8.1E-05 43.2 12.3 129 135-267 115-252 (389)
2 3te6_A Regulatory protein SIR3 86.1 2.7 9.3E-05 43.5 9.6 131 133-267 116-284 (318)
3 2qby_A CDC6 homolog 1, cell di 81.6 7.1 0.00024 39.3 10.4 128 134-266 117-249 (386)
4 2chg_A Replication factor C sm 79.8 17 0.00057 33.0 11.5 108 147-267 102-209 (226)
5 4fcw_A Chaperone protein CLPB; 74.8 19 0.00066 35.3 11.1 131 134-267 109-276 (311)
6 3bos_A Putative DNA replicatio 74.2 15 0.00051 34.2 9.6 116 147-268 104-223 (242)
7 2v1u_A Cell division control p 68.6 17 0.00057 36.6 9.1 119 147-267 130-254 (387)
8 2qp9_X Vacuolar protein sortin 68.1 59 0.002 33.3 13.3 114 147-268 143-267 (355)
9 2bjv_A PSP operon transcriptio 65.8 58 0.002 31.3 12.1 118 148-267 101-238 (265)
10 3eie_A Vacuolar protein sortin 65.5 55 0.0019 32.8 12.3 126 136-269 99-235 (322)
11 2qby_B CDC6 homolog 3, cell di 64.6 31 0.0011 34.8 10.3 112 150-266 136-249 (384)
12 3syl_A Protein CBBX; photosynt 64.5 31 0.0011 33.8 10.0 126 135-270 121-263 (309)
13 1w5s_A Origin recognition comp 62.9 39 0.0013 34.4 10.7 127 134-265 127-269 (412)
14 1njg_A DNA polymerase III subu 61.3 77 0.0026 28.6 11.5 106 147-266 126-232 (250)
15 1iqp_A RFCS; clamp loader, ext 57.4 91 0.0031 30.3 12.0 107 147-266 110-216 (327)
16 3pvs_A Replication-associated 56.9 35 0.0012 36.6 9.4 110 147-267 106-220 (447)
17 3uk6_A RUVB-like 2; hexameric 53.6 50 0.0017 33.2 9.5 114 148-269 190-310 (368)
18 1sxj_B Activator 1 37 kDa subu 52.5 86 0.0029 30.4 10.8 107 147-266 107-213 (323)
19 1xwi_A SKD1 protein; VPS4B, AA 52.0 1.6E+02 0.0054 29.6 13.0 113 147-267 105-228 (322)
20 1g8p_A Magnesium-chelatase 38 50.8 79 0.0027 31.3 10.4 118 148-270 145-303 (350)
21 3pxi_A Negative regulator of g 48.7 48 0.0017 37.6 9.3 119 147-266 579-721 (758)
22 3u61_B DNA polymerase accessor 48.6 50 0.0017 32.7 8.5 108 147-266 105-220 (324)
23 1sxj_D Activator 1 41 kDa subu 47.7 1.3E+02 0.0043 29.8 11.3 108 147-267 133-240 (353)
24 1r6b_X CLPA protein; AAA+, N-t 47.3 63 0.0021 36.5 9.9 120 147-267 557-713 (758)
25 2zan_A Vacuolar protein sortin 43.5 1.1E+02 0.0038 32.3 10.7 113 147-267 227-350 (444)
26 1l8q_A Chromosomal replication 43.2 1.7E+02 0.0057 28.9 11.4 112 148-267 99-213 (324)
27 3vfd_A Spastin; ATPase, microt 42.9 1.7E+02 0.0057 30.1 11.6 126 135-269 195-333 (389)
28 2r44_A Uncharacterized protein 42.7 92 0.0031 30.9 9.4 97 149-248 111-239 (331)
29 2chq_A Replication factor C sm 42.2 63 0.0022 31.4 7.9 108 147-267 102-209 (319)
30 1sxj_E Activator 1 40 kDa subu 36.1 1.6E+02 0.0055 29.2 10.0 108 147-267 134-242 (354)
31 1ofh_A ATP-dependent HSL prote 35.9 1.7E+02 0.0057 28.2 9.9 119 147-267 116-271 (310)
32 3hws_A ATP-dependent CLP prote 35.1 1.2E+02 0.0042 30.7 9.0 78 197-274 239-327 (363)
33 3pfi_A Holliday junction ATP-d 32.9 2.9E+02 0.0098 27.2 11.2 110 147-266 106-231 (338)
34 1jr3_A DNA polymerase III subu 30.4 4E+02 0.014 26.2 20.1 106 147-265 119-224 (373)
35 3b9p_A CG5977-PA, isoform A; A 28.0 4.1E+02 0.014 25.5 12.1 115 147-269 113-240 (297)
36 1um8_A ATP-dependent CLP prote 27.4 3.3E+02 0.011 27.4 10.8 79 195-274 254-344 (376)
37 1qvr_A CLPB protein; coiled co 27.1 3E+02 0.01 31.7 11.4 138 128-268 643-818 (854)
38 1a5t_A Delta prime, HOLB; zinc 26.6 1.4E+02 0.0048 30.0 7.7 85 147-246 108-192 (334)
39 1ojl_A Transcriptional regulat 26.1 4.8E+02 0.017 25.7 12.0 117 149-267 98-233 (304)
40 1eyh_A Epsin; superhelix of he 23.7 2.3E+02 0.0077 25.8 7.7 47 213-264 20-66 (144)
41 3d8b_A Fidgetin-like protein 1 23.5 3.8E+02 0.013 27.0 10.4 114 147-269 176-302 (357)
42 1hqc_A RUVB; extended AAA-ATPa 20.0 3.9E+02 0.013 25.8 9.3 109 147-265 90-214 (324)
No 1
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.09 E-value=2.4 Score=43.18 Aligned_cols=129 Identities=12% Similarity=0.015 Sum_probs=83.3
Q ss_pred HHHHHHHhhCCCCcEEEEeccCCCCChhhHHHHHHHHHHhhc--cCCeEEEEccccChHHHhhhccHHHHhcccceeeee
Q psy177 135 NFQDYYNEIGCKDKLIIALQDYESFPCSILNEFLLILHEYLV--TLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYN 212 (608)
Q Consensus 135 ~L~~Wy~~~~~~~~LVIileD~EsFd~~VL~DlI~llSs~~~--~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~ 212 (608)
.+..+....+ .|.||+|.|++.++..++..|..++..+.. +-++.+| +++..++ +...+.....+++....+.+
T Consensus 115 ~l~~~l~~~~--~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI-~~~~~~~-~~~~l~~~~~~r~~~~~i~~ 190 (389)
T 1fnn_A 115 LLVEHLRERD--LYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALV-IVGHNDA-VLNNLDPSTRGIMGKYVIRF 190 (389)
T ss_dssp HHHHHHHHTT--CCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEE-EEESSTH-HHHTSCHHHHHHHTTCEEEC
T ss_pred HHHHHHhhcC--CeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEE-EEECCch-HHHHhCHHhhhcCCCceEEe
Confidence 3444444433 589999999999999999999888866654 1344333 4445555 44456667777777655666
Q ss_pred cC-hhhHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHhhc------ccCHHHHHHHHHHHHH
Q psy177 213 QP-SIESLNLITDNIILNNKFPLILHHTILEFLIDNFLFY------DFSLHTFMKGVKICIL 267 (608)
Q Consensus 213 ~~-~~~~l~~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~------d~Sv~~fi~~LK~a~M 267 (608)
++ +.+-+..++...+.....+-.+.+.+++.+.+..... ...+-..+..++.+..
T Consensus 191 ~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 191 SPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp CCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 65 3333445555544321112367899999999887655 6777777777777665
No 2
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=86.06 E-value=2.7 Score=43.50 Aligned_cols=131 Identities=12% Similarity=0.091 Sum_probs=86.9
Q ss_pred hHHHHHHHHhh--CCCCcEEEEeccCCCCChhhHHHHHHHHHHhhc--cCCeEEEEccccChHHHhhhccHHHHhcccce
Q psy177 133 FLNFQDYYNEI--GCKDKLIIALQDYESFPCSILNEFLLILHEYLV--TLPFILILGVSTSPSIIHSTLNYDVISTMKIH 208 (608)
Q Consensus 133 l~~L~~Wy~~~--~~~~~LVIileD~EsFd~~VL~DlI~llSs~~~--~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~ 208 (608)
++.|...+... ..+.++||++.+++.|. =++++.-+..|.. .-+ +.|.||+.+.+.....|++.+.+++..+
T Consensus 116 ~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~---~q~~L~~l~~~~~~~~s~-~~vI~i~n~~d~~~~~L~~~v~SR~~~~ 191 (318)
T 3te6_A 116 LEALNFYITNVPKAKKRKTLILIQNPENLL---SEKILQYFEKWISSKNSK-LSIICVGGHNVTIREQINIMPSLKAHFT 191 (318)
T ss_dssp HHHHHHHHHHSCGGGSCEEEEEEECCSSSC---CTHHHHHHHHHHHCSSCC-EEEEEECCSSCCCHHHHHTCHHHHTTEE
T ss_pred HHHHHHHHHHhhhccCCceEEEEecHHHhh---cchHHHHHHhcccccCCc-EEEEEEecCcccchhhcchhhhccCCce
Confidence 56777777653 22368999999999996 2455544445542 223 4566898888888888888888998776
Q ss_pred eeeecC-hhhHHHHHHHHHhhCCC-C--------------------------------CcccCHHHHHHHHHHHhhcccC
Q psy177 209 TFYNQP-SIESLNLITDNIILNNK-F--------------------------------PLILHHTILEFLIDNFLFYDFS 254 (608)
Q Consensus 209 ~F~~~~-~~~~l~~I~~~~l~~~~-~--------------------------------p~~Lg~~v~~~Lld~F~~~d~S 254 (608)
.|.+++ +.+=+..|++.-+.... . +..+.+.+++++...--.....
T Consensus 192 ~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD 271 (318)
T 3te6_A 192 EIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGS 271 (318)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCS
T ss_pred EEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCCh
Confidence 676665 33333444444333211 1 1358999999999976666777
Q ss_pred HHHHHHHHHHHHH
Q psy177 255 LHTFMKGVKICIL 267 (608)
Q Consensus 255 v~~fi~~LK~a~M 267 (608)
+-.-+..++.|..
T Consensus 272 ~R~Al~ilr~A~~ 284 (318)
T 3te6_A 272 TEKAFKICEAAVE 284 (318)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776654
No 3
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=81.56 E-value=7.1 Score=39.27 Aligned_cols=128 Identities=15% Similarity=0.153 Sum_probs=76.4
Q ss_pred HHHHHHHHhhCCCCcEEEEeccCCCCC----hhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhccccee
Q psy177 134 LNFQDYYNEIGCKDKLIIALQDYESFP----CSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHT 209 (608)
Q Consensus 134 ~~L~~Wy~~~~~~~~LVIileD~EsFd----~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~ 209 (608)
+.+..+....+ .|.||+|.|++.+. ..++..|+..+..+ ..-++.+| ++++..+... .+.....+++....
T Consensus 117 ~~l~~~l~~~~--~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~-~~~~~~~I-~~~~~~~~~~-~~~~~~~~r~~~~~ 191 (386)
T 2qby_A 117 RRLVKAVRDYG--SQVVIVLDEIDAFVKKYNDDILYKLSRINSEV-NKSKISFI-GITNDVKFVD-LLDPRVKSSLSEEE 191 (386)
T ss_dssp HHHHHHHHTCC--SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC-CC--EEEE-EEESCGGGGG-GCTTHHHHTTTTEE
T ss_pred HHHHHHHhccC--CeEEEEEcChhhhhccCcCHHHHHHhhchhhc-CCCeEEEE-EEECCCChHh-hhCHHHhccCCCee
Confidence 33444444322 58999999999885 67777777665543 33344444 4555555433 34555667776666
Q ss_pred eeecC-hhhHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Q psy177 210 FYNQP-SIESLNLITDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICI 266 (608)
Q Consensus 210 F~~~~-~~~~l~~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~ 266 (608)
+.+++ +.+-+..++...+.....+..+.+.+.+.+.........++...+..++.+.
T Consensus 192 i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~ 249 (386)
T 2qby_A 192 IIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSG 249 (386)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 77765 3333455555544322123567888988888866544467776666666554
No 4
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=79.84 E-value=17 Score=33.00 Aligned_cols=108 Identities=16% Similarity=0.103 Sum_probs=69.8
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
.+.||+|.|++.+++..++.|..++........++++ +... ..+.....+++..-.|.-.+ .+-+..++...
T Consensus 102 ~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~---~~~~----~~~~~~l~~r~~~i~~~~~~-~~~~~~~l~~~ 173 (226)
T 2chg_A 102 PFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILS---CNYV----SRIIEPIQSRCAVFRFKPVP-KEAMKKRLLEI 173 (226)
T ss_dssp SCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEE---ESCG----GGSCHHHHTTSEEEECCCCC-HHHHHHHHHHH
T ss_pred CceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEE---eCCh----hhcCHHHHHhCceeecCCCC-HHHHHHHHHHH
Confidence 6899999999999999999988888775544433332 3333 34556666666533333333 33445566655
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
+.... ..+.+..++.|... ...++...++.++.+.+
T Consensus 174 ~~~~~--~~~~~~~~~~l~~~---~~g~~r~l~~~l~~~~~ 209 (226)
T 2chg_A 174 CEKEG--VKITEDGLEALIYI---SGGDFRKAINALQGAAA 209 (226)
T ss_dssp HHHHT--CCBCHHHHHHHHHH---HTTCHHHHHHHHHHHHH
T ss_pred HHHcC--CCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHh
Confidence 54322 44788888888754 36778888887777654
No 5
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=74.84 E-value=19 Score=35.33 Aligned_cols=131 Identities=11% Similarity=0.119 Sum_probs=84.1
Q ss_pred HHHHHHHHhhCCCCcEEEEeccCCCCChhhHHHHHHHHHHhhc--------cCCeEEEEccccC-hH-------------
Q psy177 134 LNFQDYYNEIGCKDKLIIALQDYESFPCSILNEFLLILHEYLV--------TLPFILILGVSTS-PS------------- 191 (608)
Q Consensus 134 ~~L~~Wy~~~~~~~~LVIileD~EsFd~~VL~DlI~llSs~~~--------~IP~vlIfGIATs-v~------------- 191 (608)
..+..+.... +.-|++|.+.+..++.+.+.|+.++....- .++=+++++.+.. .+
T Consensus 109 ~~~~~~~~~~---~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~ 185 (311)
T 4fcw_A 109 GQLTEAVRRR---PYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYE 185 (311)
T ss_dssp CHHHHHHHHC---SSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSS
T ss_pred chHHHHHHhC---CCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHH
Confidence 3455555543 357999999999999999999999987542 1221222222222 11
Q ss_pred --------HHhhhccHHHHhcccceeeeecChhhHHHHHHHHHhhCC-------CCCcccCHHHHHHHHHHHhhcccCHH
Q psy177 192 --------IIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNIILNN-------KFPLILHHTILEFLIDNFLFYDFSLH 256 (608)
Q Consensus 192 --------~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~l~~~-------~~p~~Lg~~v~~~Lld~F~~~d~Sv~ 256 (608)
.+...++....+++.....-.+...+-+..|++..+... ...+.+++.+++.|.++-+....++.
T Consensus 186 ~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R 265 (311)
T 4fcw_A 186 RIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGAR 265 (311)
T ss_dssp THHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTT
T ss_pred HHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCch
Confidence 136678888889985444444455666777777765432 33578999999999996664445555
Q ss_pred HHHHHHHHHHH
Q psy177 257 TFMKGVKICIL 267 (608)
Q Consensus 257 ~fi~~LK~a~M 267 (608)
.+.+.++-+++
T Consensus 266 ~L~~~i~~~~~ 276 (311)
T 4fcw_A 266 PLRRVIQRELE 276 (311)
T ss_dssp THHHHHHHHTH
T ss_pred hHHHHHHHHHH
Confidence 55555555444
No 6
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=74.24 E-value=15 Score=34.16 Aligned_cols=116 Identities=17% Similarity=0.091 Sum_probs=71.1
Q ss_pred CcEEEEeccCCCCChhh--HHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcc-cceeeeecC-hhhHHHHH
Q psy177 147 DKLIIALQDYESFPCSI--LNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTM-KIHTFYNQP-SIESLNLI 222 (608)
Q Consensus 147 ~~LVIileD~EsFd~~V--L~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L-~~~~F~~~~-~~~~l~~I 222 (608)
.+-||+|.|++.++... ...|..++......-...+|+.-...++.+...+ ....+++ .+..+.+.+ +.+-...+
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~-~~l~~r~~~~~~i~l~~~~~~~~~~~ 182 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVL-PDLVSRMHWGLTYQLQPMMDDEKLAA 182 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCC-HHHHHHHHHSEEEECCCCCGGGHHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhh-hhhhhHhhcCceEEeCCCCHHHHHHH
Confidence 46789999999998766 7778887776655433334444444443333333 3344444 223344432 23344456
Q ss_pred HHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHh
Q psy177 223 TDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICILK 268 (608)
Q Consensus 223 ~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M~ 268 (608)
+...+... ++.+++.+++.|..+. ..++..+...++-+...
T Consensus 183 l~~~~~~~--~~~~~~~~~~~l~~~~---~g~~r~l~~~l~~~~~~ 223 (242)
T 3bos_A 183 LQRRAAMR--GLQLPEDVGRFLLNRM---ARDLRTLFDVLDRLDKA 223 (242)
T ss_dssp HHHHHHHT--TCCCCHHHHHHHHHHT---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCCCHHHHHHHHHHc---cCCHHHHHHHHHHHHHH
Confidence 66655432 3578999999998864 56888888888876553
No 7
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=68.64 E-value=17 Score=36.61 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=74.0
Q ss_pred CcEEEEeccCCCCChhh-HHHHHHHHHHhhc----cCCeEEEEccccChHHHhhhccHHHHhcccceeeeecC-hhhHHH
Q psy177 147 DKLIIALQDYESFPCSI-LNEFLLILHEYLV----TLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQP-SIESLN 220 (608)
Q Consensus 147 ~~LVIileD~EsFd~~V-L~DlI~llSs~~~----~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~-~~~~l~ 220 (608)
.|.||+|.|++.+...- -++.+.-+-.|.. .-++++ +|+++..+ +...+.....+++....+.+++ +.+-+.
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~-I~~t~~~~-~~~~l~~~l~~r~~~~~i~l~~l~~~~~~ 207 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSL-VGITNSLG-FVENLEPRVKSSLGEVELVFPPYTAPQLR 207 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEE-EEECSCST-TSSSSCHHHHTTTTSEECCBCCCCHHHHH
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEE-EEEECCCc-hHhhhCHHHHhcCCCeEEeeCCCCHHHHH
Confidence 59999999999997652 3444444445554 334444 45555543 3345677778887665566664 344455
Q ss_pred HHHHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 221 LITDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 221 ~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
.+++..+...-.+..+.+.+++.+..........+-..+..++.+..
T Consensus 208 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 208 DILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp HHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 56665543211245678889999988877666788777777777753
No 8
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=68.08 E-value=59 Score=33.33 Aligned_cols=114 Identities=15% Similarity=0.177 Sum_probs=69.3
Q ss_pred CcEEEEeccCCCCChh-----------hHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecCh
Q psy177 147 DKLIIALQDYESFPCS-----------ILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPS 215 (608)
Q Consensus 147 ~~LVIileD~EsFd~~-----------VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~ 215 (608)
.|-||+|.+++++.+. +++.|+..+......-+-++|+|.+..++ .|+...++++....+--.+.
T Consensus 143 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~----~ld~al~rRf~~~i~i~~P~ 218 (355)
T 2qp9_X 143 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW----QLDSAIRRRFERRIYIPLPD 218 (355)
T ss_dssp SSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG----GSCHHHHHTCCEEEECCCCC
T ss_pred CCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc----cCCHHHHcccCEEEEeCCcC
Confidence 5899999999998743 57777777665443334467777766665 45666666664433322344
Q ss_pred hhHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHh
Q psy177 216 IESLNLITDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICILK 268 (608)
Q Consensus 216 ~~~l~~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M~ 268 (608)
.+-...|++..+... +..+....+..|..+.. .+|...+...++-|.|.
T Consensus 219 ~~~r~~il~~~l~~~--~~~~~~~~l~~la~~t~--G~sg~dl~~l~~~A~~~ 267 (355)
T 2qp9_X 219 LAARTTMFEINVGDT--PSVLTKEDYRTLGAMTE--GYSGSDIAVVVKDALMQ 267 (355)
T ss_dssp HHHHHHHHHHHHTTS--CBCCCHHHHHHHHHHTT--TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence 455566777766543 45567888888887653 34555555555555544
No 9
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=65.76 E-value=58 Score=31.27 Aligned_cols=118 Identities=12% Similarity=0.196 Sum_probs=77.5
Q ss_pred cEEEEeccCCCCChhhHHHHHHHHHHhh---------ccCCeEEEEccccChH-HH-hhhccHHHHhcccceeeeecChh
Q psy177 148 KLIIALQDYESFPCSILNEFLLILHEYL---------VTLPFILILGVSTSPS-II-HSTLNYDVISTMKIHTFYNQPSI 216 (608)
Q Consensus 148 ~LVIileD~EsFd~~VL~DlI~llSs~~---------~~IP~vlIfGIATsv~-~~-~~~Lp~s~~~~L~~~~F~~~~~~ 216 (608)
+-+|+|.+.+.++..+...|..++..-. ....+.+|+.-..+++ .+ ...+.....+++....+.+++-.
T Consensus 101 ~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~ 180 (265)
T 2bjv_A 101 GGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLR 180 (265)
T ss_dssp TSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGG
T ss_pred CcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChh
Confidence 3489999999999999998988887531 1234555544433333 33 45688889999988788888765
Q ss_pred hH---HHHHHHHHhh----CCCCC--cccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 217 ES---LNLITDNIIL----NNKFP--LILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 217 ~~---l~~I~~~~l~----~~~~p--~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
+. +..+++.++. ....+ ..+++.+++.|..+ ....++..+.+.++-+++
T Consensus 181 ~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~--~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNY--RWPGNIRELKNVVERSVY 238 (265)
T ss_dssp GCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHS--CCTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhC--CCCCCHHHHHHHHHHHHH
Confidence 42 3333333322 22222 37899999998764 335677888888887765
No 10
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=65.47 E-value=55 Score=32.79 Aligned_cols=126 Identities=13% Similarity=0.146 Sum_probs=77.0
Q ss_pred HHHHHHhhCCCCcEEEEeccCCCCCh-----------hhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhc
Q psy177 136 FQDYYNEIGCKDKLIIALQDYESFPC-----------SILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVIST 204 (608)
Q Consensus 136 L~~Wy~~~~~~~~LVIileD~EsFd~-----------~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~ 204 (608)
+...+.......|-||+|.|++++.+ .+.+.|+..+......-.-++|+|.+..++. |+....++
T Consensus 99 ~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~----ld~al~~R 174 (322)
T 3eie_A 99 VKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ----LDSAIRRR 174 (322)
T ss_dssp HHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGG----SCHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhh----CCHHHHcc
Confidence 34444332223688999999998865 4577787777665444455667676655544 55666666
Q ss_pred ccceeeeecChhhHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHhh
Q psy177 205 MKIHTFYNQPSIESLNLITDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICILKH 269 (608)
Q Consensus 205 L~~~~F~~~~~~~~l~~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M~H 269 (608)
+....+--.+..+-...|++..+-. .+..+....+..|..+. ..+|...+...++.|.|.-
T Consensus 175 f~~~i~~~~p~~~~r~~il~~~~~~--~~~~~~~~~l~~la~~t--~g~sg~di~~l~~~a~~~a 235 (322)
T 3eie_A 175 FERRIYIPLPDLAARTTMFEINVGD--TPCVLTKEDYRTLGAMT--EGYSGSDIAVVVKDALMQP 235 (322)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHHTT--CCCCCCHHHHHHHHHTT--TTCCHHHHHHHHHHHTTHH
T ss_pred cCeEEEeCCCCHHHHHHHHHHHhcc--CCCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence 6444322234444555677776543 35667888888887754 3456666666666665543
No 11
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=64.63 E-value=31 Score=34.77 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=68.1
Q ss_pred EEEeccCCCCChhhHHHH-HHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecC-hhhHHHHHHHHHh
Q psy177 150 IIALQDYESFPCSILNEF-LLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQP-SIESLNLITDNII 227 (608)
Q Consensus 150 VIileD~EsFd~~VL~Dl-I~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~-~~~~l~~I~~~~l 227 (608)
||+|.|++.++..--+++ +..+..+. +=+.++++++... +...+.....++++. .+.+++ +.+-+..++...+
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~---~~~~iI~~t~~~~-~~~~l~~~l~sr~~~-~i~l~~l~~~~~~~il~~~~ 210 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD---ANISVIMISNDIN-VRDYMEPRVLSSLGP-SVIFKPYDAEQLKFILSKYA 210 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS---SCEEEEEECSSTT-TTTTSCHHHHHTCCC-EEEECCCCHHHHHHHHHHHH
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC---cceEEEEEECCCc-hHhhhCHHHHhcCCC-eEEECCCCHHHHHHHHHHHH
Confidence 999999998865422233 44444444 3333445555443 334566667777655 566664 4445556666655
Q ss_pred hCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Q psy177 228 LNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICI 266 (608)
Q Consensus 228 ~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~ 266 (608)
...-.+..+.+.+++.+.+........+...+..++.+.
T Consensus 211 ~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~ 249 (384)
T 2qby_B 211 EYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAA 249 (384)
T ss_dssp HHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 422123568889999998877655677777777777664
No 12
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=64.47 E-value=31 Score=33.79 Aligned_cols=126 Identities=10% Similarity=0.003 Sum_probs=80.8
Q ss_pred HHHHHHHhhCCCCcEEEEeccCCCC---------ChhhHHHHHHHHHHhhccCCeEEEEccccCh--HHHhhhccHHHHh
Q psy177 135 NFQDYYNEIGCKDKLIIALQDYESF---------PCSILNEFLLILHEYLVTLPFILILGVSTSP--SIIHSTLNYDVIS 203 (608)
Q Consensus 135 ~L~~Wy~~~~~~~~LVIileD~EsF---------d~~VL~DlI~llSs~~~~IP~vlIfGIATsv--~~~~~~Lp~s~~~ 203 (608)
.+..++.... +-||+|.|.+.+ +..+++.|+.++......+ ++| +.+++. +.+. .+.....+
T Consensus 121 ~~~~~~~~~~---~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~--~~i-~~~~~~~~~~~~-~~~~~l~~ 193 (309)
T 3syl_A 121 KTKEVLKRAM---GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDL--VVI-LAGYADRMENFF-QSNPGFRS 193 (309)
T ss_dssp HHHHHHHHHT---TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTC--EEE-EEECHHHHHHHH-HHSTTHHH
T ss_pred HHHHHHHhcC---CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCE--EEE-EeCChHHHHHHH-hhCHHHHH
Confidence 4455555442 459999999955 8999999999998765444 333 222222 2222 23455555
Q ss_pred cccceeeeecC-hhhHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHh-----hcccCHHHHHHHHHHHHHhhh
Q psy177 204 TMKIHTFYNQP-SIESLNLITDNIILNNKFPLILHHTILEFLIDNFL-----FYDFSLHTFMKGVKICILKHI 270 (608)
Q Consensus 204 ~L~~~~F~~~~-~~~~l~~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~-----~~d~Sv~~fi~~LK~a~M~HF 270 (608)
++. ..+.+++ +.+-+..|++..+... .+.+++.++..+.++.. .+..++..+...++-+++.+-
T Consensus 194 R~~-~~i~~~~~~~~~~~~il~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~ 263 (309)
T 3syl_A 194 RIA-HHIEFPDYSDEELFEIAGHMLDDQ--NYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQA 263 (309)
T ss_dssp HEE-EEEEECCCCHHHHHHHHHHHHHHT--TCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred hCC-eEEEcCCcCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHH
Confidence 552 3344443 3455566777766654 46899999999998765 555668888888888887553
No 13
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=62.85 E-value=39 Score=34.40 Aligned_cols=127 Identities=14% Similarity=0.074 Sum_probs=67.6
Q ss_pred HHHHHHHHhhCCCCcEEEEeccCCCCC------hhhHHHHHHHHHHhhc-c--CCeEEEEccccChHHHhhhcc---HHH
Q psy177 134 LNFQDYYNEIGCKDKLIIALQDYESFP------CSILNEFLLILHEYLV-T--LPFILILGVSTSPSIIHSTLN---YDV 201 (608)
Q Consensus 134 ~~L~~Wy~~~~~~~~LVIileD~EsFd------~~VL~DlI~llSs~~~-~--IP~vlIfGIATsv~~~~~~Lp---~s~ 201 (608)
+.|..+....+ .|+||+|.|++.++ ..+|..++..+..... . -++.+| +++..++.. ..+. ...
T Consensus 127 ~~l~~~l~~~~--~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI-~~~~~~~~~-~~l~~~~~~~ 202 (412)
T 1w5s_A 127 KALVDNLYVEN--HYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFL-LVASDVRAL-SYMREKIPQV 202 (412)
T ss_dssp HHHHHHHHHHT--CEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEE-EEEEETHHH-HHHHHHCHHH
T ss_pred HHHHHHHHhcC--CeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEE-EEeccccHH-HHHhhhcchh
Confidence 44555555433 59999999999875 4788888777665421 2 454444 344334433 2333 445
Q ss_pred HhcccceeeeecC-hhhHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHhhcc---cCHHHHHHHHHHH
Q psy177 202 ISTMKIHTFYNQP-SIESLNLITDNIILNNKFPLILHHTILEFLIDNFLFYD---FSLHTFMKGVKIC 265 (608)
Q Consensus 202 ~~~L~~~~F~~~~-~~~~l~~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d---~Sv~~fi~~LK~a 265 (608)
.+.+... +.+.+ +.+-...++...+.....+-.+.+.....+........ ..+-..+..++.+
T Consensus 203 ~~~~~~~-i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a 269 (412)
T 1w5s_A 203 ESQIGFK-LHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMA 269 (412)
T ss_dssp HTTCSEE-EECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHH
T ss_pred hhhcCCe-eeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 5555444 66654 22333444443322111123467778887777665333 4444444444433
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=61.32 E-value=77 Score=28.65 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=65.9
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecC-hhhHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQP-SIESLNLITDN 225 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~-~~~~l~~I~~~ 225 (608)
.+.||+|.|++.++...++.|+.++..... ..++| ++++... .++....++. ..+.+++ +.+-+..++..
T Consensus 126 ~~~vlviDe~~~l~~~~~~~l~~~l~~~~~--~~~~i-~~t~~~~----~~~~~l~~r~--~~i~l~~l~~~e~~~~l~~ 196 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRHSFNALLKTLEEPPE--HVKFL-LATTDPQ----KLPVTILSRC--LQFHLKALDVEQIRHQLEH 196 (250)
T ss_dssp SSEEEEEETGGGSCHHHHHHHHHHHHSCCT--TEEEE-EEESCGG----GSCHHHHTTS--EEEECCCCCHHHHHHHHHH
T ss_pred CceEEEEECcccccHHHHHHHHHHHhcCCC--ceEEE-EEeCChH----hCCHHHHHHh--hhccCCCCCHHHHHHHHHH
Confidence 589999999999999999999887765422 23333 3333332 3444455543 3444443 33445556666
Q ss_pred HhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Q psy177 226 IILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICI 266 (608)
Q Consensus 226 ~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~ 266 (608)
.+... +..+.+..++.|.++. ..++......++.+.
T Consensus 197 ~~~~~--~~~~~~~~~~~l~~~~---~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 197 ILNEE--HIAHEPRALQLLARAA---EGSLRDALSLTDQAI 232 (250)
T ss_dssp HHHHT--TCCBCHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHhc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 65543 3467788888777754 557777777666654
No 15
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=57.41 E-value=91 Score=30.32 Aligned_cols=107 Identities=15% Similarity=0.093 Sum_probs=71.4
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
.+-||++.|.+.+++...+.|..++.......+|+++ ++.++ .++....++...-.|.-.+ .+-+..++...
T Consensus 110 ~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~---~~~~~----~l~~~l~sr~~~~~~~~l~-~~~~~~~l~~~ 181 (327)
T 1iqp_A 110 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILS---CNYSS----KIIEPIQSRCAIFRFRPLR-DEDIAKRLRYI 181 (327)
T ss_dssp SCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEE---ESCGG----GSCHHHHHTEEEEECCCCC-HHHHHHHHHHH
T ss_pred CCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEE---eCCcc----ccCHHHHhhCcEEEecCCC-HHHHHHHHHHH
Confidence 5789999999999999999999888876555544443 33332 3555666665544444333 34444566665
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICI 266 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~ 266 (608)
+... +..+.+..++.|.... ..++...+..++-+.
T Consensus 182 ~~~~--~~~~~~~~~~~l~~~~---~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 182 AENE--GLELTEEGLQAILYIA---EGDMRRAINILQAAA 216 (327)
T ss_dssp HHTT--TCEECHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHhc--CCCCCHHHHHHHHHHC---CCCHHHHHHHHHHHH
Confidence 5443 4568899999988754 677877777777554
No 16
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=56.89 E-value=35 Score=36.56 Aligned_cols=110 Identities=12% Similarity=0.164 Sum_probs=74.5
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
.+-||+|.+.+.|+......|+..+... . +.++|..|. .....++....+++..-.|...+ .+-+..+++..
T Consensus 106 ~~~iLfIDEI~~l~~~~q~~LL~~le~~----~-v~lI~att~--n~~~~l~~aL~sR~~v~~l~~l~-~edi~~il~~~ 177 (447)
T 3pvs_A 106 RRTILFVDEVHRFNKSQQDAFLPHIEDG----T-ITFIGATTE--NPSFELNSALLSRARVYLLKSLS-TEDIEQVLTQA 177 (447)
T ss_dssp CCEEEEEETTTCC------CCHHHHHTT----S-CEEEEEESS--CGGGSSCHHHHTTEEEEECCCCC-HHHHHHHHHHH
T ss_pred CCcEEEEeChhhhCHHHHHHHHHHHhcC----c-eEEEecCCC--CcccccCHHHhCceeEEeeCCcC-HHHHHHHHHHH
Confidence 5789999999999999888888777652 2 344444443 22246778888887765555554 44556677777
Q ss_pred hhCCC-----CCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 227 ILNNK-----FPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 227 l~~~~-----~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
+.... ..+.+++.+++.|..+ .+.++...+..|+.+..
T Consensus 178 l~~~~~~~~~~~~~i~~~al~~L~~~---~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 178 MEDKTRGYGGQDIVLPDETRRAIAEL---VNGDARRALNTLEMMAD 220 (447)
T ss_dssp HHCTTTSSTTSSEECCHHHHHHHHHH---HCSCHHHHHHHHHHHHH
T ss_pred HHHHhhhhccccCcCCHHHHHHHHHH---CCCCHHHHHHHHHHHHH
Confidence 76532 3578999999999987 57899999999998875
No 17
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=53.57 E-value=50 Score=33.24 Aligned_cols=114 Identities=10% Similarity=0.043 Sum_probs=74.9
Q ss_pred cEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEcccc-------ChHHHhhhccHHHHhcccceeeeecChhhHHH
Q psy177 148 KLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVST-------SPSIIHSTLNYDVISTMKIHTFYNQPSIESLN 220 (608)
Q Consensus 148 ~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIAT-------sv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~ 220 (608)
|-||+|.+.+.+++..++.|..++.... .|++ ++|-.. +.......++....+++..-.|.-.+. +-+.
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~--~~~~-ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~-~e~~ 265 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDM--APVL-IMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSE-KDTK 265 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTT--CCEE-EEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCH-HHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcC--CCee-eeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCH-HHHH
Confidence 5799999999999999988887775533 3443 333221 001123457777888877644544444 3445
Q ss_pred HHHHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHhh
Q psy177 221 LITDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICILKH 269 (608)
Q Consensus 221 ~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M~H 269 (608)
.+++..+... ...+++.+++.|..+... .++...+..++.|.+.-
T Consensus 266 ~il~~~~~~~--~~~~~~~~l~~l~~~~~~--G~~r~~~~ll~~a~~~A 310 (368)
T 3uk6_A 266 QILRIRCEEE--DVEMSEDAYTVLTRIGLE--TSLRYAIQLITAASLVC 310 (368)
T ss_dssp HHHHHHHHHT--TCCBCHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHH
Confidence 5666555443 356899999999886643 78888888888877643
No 18
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=52.48 E-value=86 Score=30.45 Aligned_cols=107 Identities=12% Similarity=0.113 Sum_probs=68.9
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
++.||+|.|.+.++....+.|..++........|++ +++.. ..++....++...-.|.-.+. +-+..++...
T Consensus 107 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il---~~~~~----~~l~~~l~sr~~~i~~~~~~~-~~~~~~l~~~ 178 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAF---ACNQS----NKIIEPLQSQCAILRYSKLSD-EDVLKRLLQI 178 (323)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEE---EESCG----GGSCHHHHTTSEEEECCCCCH-HHHHHHHHHH
T ss_pred CceEEEEECcccCCHHHHHHHHHHHhccCCCceEEE---EeCCh----hhchhHHHhhceEEeecCCCH-HHHHHHHHHH
Confidence 488999999999999998888888877654444433 33333 245666666655444443343 3344455554
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICI 266 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~ 266 (608)
+... ++.+.+..++.|.+.. ..++...+..++-+.
T Consensus 179 ~~~~--~~~~~~~~~~~l~~~~---~G~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 179 IKLE--DVKYTNDGLEAIIFTA---EGDMRQAINNLQSTV 213 (323)
T ss_dssp HHHH--TCCBCHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 4332 3457888888887754 667777777776554
No 19
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=52.02 E-value=1.6e+02 Score=29.59 Aligned_cols=113 Identities=17% Similarity=0.129 Sum_probs=66.7
Q ss_pred CcEEEEeccCCCCCh-----------hhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecCh
Q psy177 147 DKLIIALQDYESFPC-----------SILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPS 215 (608)
Q Consensus 147 ~~LVIileD~EsFd~-----------~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~ 215 (608)
.|-||+|.+++++.+ .+++.|+..+......-+-++|+|.+..++ .++...++++....+--.+.
T Consensus 105 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~----~ld~al~rRf~~~i~i~~P~ 180 (322)
T 1xwi_A 105 KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW----VLDSAIRRRFEKRIYIPLPE 180 (322)
T ss_dssp SSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT----TSCHHHHHTCCEEEECCCCC
T ss_pred CCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc----cCCHHHHhhcCeEEEeCCcC
Confidence 588999999998832 456666666654433334466666655553 45666677665433322344
Q ss_pred hhHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 216 IESLNLITDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 216 ~~~l~~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
.+-...|++..+-.. +..+....+..|..+.. .+|-..+-.-++-|.|
T Consensus 181 ~~~r~~il~~~l~~~--~~~l~~~~l~~la~~t~--G~sgadl~~l~~~A~~ 228 (322)
T 1xwi_A 181 PHARAAMFKLHLGTT--QNSLTEADFRELGRKTD--GYSGADISIIVRDALM 228 (322)
T ss_dssp HHHHHHHHHHHHTTC--CBCCCHHHHHHHHHTCT--TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 555666777766433 45567778888877543 3444444444444443
No 20
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=50.77 E-value=79 Score=31.32 Aligned_cols=118 Identities=9% Similarity=0.024 Sum_probs=76.7
Q ss_pred cEEEEeccCCCCChhhHHHHHHHHHHhhc---------c--CCeEEEEccccChHHHhhhccHHHHhcccceeeeecCh-
Q psy177 148 KLIIALQDYESFPCSILNEFLLILHEYLV---------T--LPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPS- 215 (608)
Q Consensus 148 ~LVIileD~EsFd~~VL~DlI~llSs~~~---------~--IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~- 215 (608)
+-|++|.+++.+++.+++.|..++..... . -++++| |. |++ ....++....+++.. .+.+...
T Consensus 145 ~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li-~~-~n~--~~~~l~~~L~~R~~~-~~~l~~~~ 219 (350)
T 1g8p_A 145 RGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLV-GS-GNP--EEGDLRPQLLDRFGL-SVEVLSPR 219 (350)
T ss_dssp TEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEE-EE-ECS--CSCCCCHHHHTTCSE-EEECCCCC
T ss_pred CCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEE-EE-eCC--CCCCCCHHHHhhcce-EEEcCCCC
Confidence 56899999999999999999998876321 1 134443 32 332 124688888998855 3555543
Q ss_pred -hhHHHHHHHHHhh---------------------------CCCCCcccCHHHHHHHHHHHhhccc-CHHHHHHHHHHHH
Q psy177 216 -IESLNLITDNIIL---------------------------NNKFPLILHHTILEFLIDNFLFYDF-SLHTFMKGVKICI 266 (608)
Q Consensus 216 -~~~l~~I~~~~l~---------------------------~~~~p~~Lg~~v~~~Lld~F~~~d~-Sv~~fi~~LK~a~ 266 (608)
.+.-..|++..+. .....+.+++.++++|.+.....+. |.-..+..++.|.
T Consensus 220 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~ 299 (350)
T 1g8p_A 220 DVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSAR 299 (350)
T ss_dssp SHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 3333244433110 0112458999999999999887776 8888888888776
Q ss_pred Hhhh
Q psy177 267 LKHI 270 (608)
Q Consensus 267 M~HF 270 (608)
..-+
T Consensus 300 ~~A~ 303 (350)
T 1g8p_A 300 ALAA 303 (350)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 21
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=48.68 E-value=48 Score=37.60 Aligned_cols=119 Identities=10% Similarity=0.121 Sum_probs=78.3
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhc---------cCCeEEEEccccC-------hHHHhhhccHHHHhcccceee
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLV---------TLPFILILGVSTS-------PSIIHSTLNYDVISTMKIHTF 210 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~---------~IP~vlIfGIATs-------v~~~~~~Lp~s~~~~L~~~~F 210 (608)
+.=||+|.+.|.+++.+++-|+.++....- .-.+++|+.-... .+.+.+.++....+++.. .+
T Consensus 579 ~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~-~i 657 (758)
T 3pxi_A 579 PYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDE-II 657 (758)
T ss_dssp SSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSE-EE
T ss_pred CCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCe-EE
Confidence 445999999999999999999999987431 1123444322211 145677799999999953 34
Q ss_pred eecC-hhhHHHHHHHHHhhC-------CCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Q psy177 211 YNQP-SIESLNLITDNIILN-------NKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICI 266 (608)
Q Consensus 211 ~~~~-~~~~l~~I~~~~l~~-------~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~ 266 (608)
.+++ ..+-+..|++..+.. ....+.+++.++++|.++-....+++..+-+.|+-++
T Consensus 658 ~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v 721 (758)
T 3pxi_A 658 VFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHV 721 (758)
T ss_dssp ECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHT
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHH
Confidence 4443 334444555554422 2456889999999999876666777766666666443
No 22
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=48.60 E-value=50 Score=32.74 Aligned_cols=108 Identities=7% Similarity=0.145 Sum_probs=70.0
Q ss_pred CcEEEEeccCCCCC-hhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhH---HHHH
Q psy177 147 DKLIIALQDYESFP-CSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIES---LNLI 222 (608)
Q Consensus 147 ~~LVIileD~EsFd-~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~---l~~I 222 (608)
.+-||+|.|.+.+. ....+.|..++..+....+|++ .+..+. .++....+++..-.|..++..+. +..+
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~---~~n~~~----~l~~~l~sR~~~i~~~~~~~~e~~~il~~~ 177 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIII---TANNID----GIIKPLQSRCRVITFGQPTDEDKIEMMKQM 177 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEE---EESSGG----GSCTTHHHHSEEEECCCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEE---EeCCcc----ccCHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 57899999999999 8888888888888776666555 333333 46666777776555555554442 2333
Q ss_pred HHH---HhhCCCCCcccCH-HHHHHHHHHHhhcccCHHHHHHHHHHHH
Q psy177 223 TDN---IILNNKFPLILHH-TILEFLIDNFLFYDFSLHTFMKGVKICI 266 (608)
Q Consensus 223 ~~~---~l~~~~~p~~Lg~-~v~~~Lld~F~~~d~Sv~~fi~~LK~a~ 266 (608)
++. ..... .+.+.+ .++..|..+ ...++...+..|+.+.
T Consensus 178 ~~~l~~~~~~~--~~~~~~~~~~~~l~~~---~~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 178 IRRLTEICKHE--GIAIADMKVVAALVKK---NFPDFRKTIGELDSYS 220 (324)
T ss_dssp HHHHHHHHHHH--TCCBSCHHHHHHHHHH---TCSCTTHHHHHHHHHG
T ss_pred HHHHHHHHHHc--CCCCCcHHHHHHHHHh---CCCCHHHHHHHHHHHh
Confidence 322 22222 356777 888888765 4567777777777665
No 23
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=47.69 E-value=1.3e+02 Score=29.80 Aligned_cols=108 Identities=14% Similarity=0.039 Sum_probs=70.1
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
.+-||++.+++.+++...+.|..++..+.....|+++ ++.++ .++....++...-.|.-.+. +-+..++...
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~---~~~~~----~l~~~l~sR~~~i~~~~~~~-~~~~~~l~~~ 204 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLI---CNYVT----RIIDPLASQCSKFRFKALDA-SNAIDRLRFI 204 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEE---ESCGG----GSCHHHHHHSEEEECCCCCH-HHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEE---eCchh----hCcchhhccCceEEeCCCCH-HHHHHHHHHH
Confidence 4679999999999999999999998887665555543 23332 35555666554333443333 3444555555
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
+... .+.+.+.+++.|.+... .++...+..++.+..
T Consensus 205 ~~~~--~~~i~~~~l~~l~~~~~---G~~r~~~~~l~~~~~ 240 (353)
T 1sxj_D 205 SEQE--NVKCDDGVLERILDISA---GDLRRGITLLQSASK 240 (353)
T ss_dssp HHTT--TCCCCHHHHHHHHHHTS---SCHHHHHHHHHHTHH
T ss_pred HHHh--CCCCCHHHHHHHHHHcC---CCHHHHHHHHHHHHH
Confidence 5443 35688999999988643 667777776665543
No 24
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=47.32 E-value=63 Score=36.53 Aligned_cols=120 Identities=10% Similarity=0.180 Sum_probs=83.0
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhcc--------CC-eEEEEcccc--------------------ChHHHhhhc
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVT--------LP-FILILGVST--------------------SPSIIHSTL 197 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~--------IP-~vlIfGIAT--------------------sv~~~~~~L 197 (608)
++-||+|.++|..++.+++-|+.++....-+ .. +++|+.-.. ..+.+.+.+
T Consensus 557 ~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 636 (758)
T 1r6b_X 557 PHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIF 636 (758)
T ss_dssp SSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHS
T ss_pred CCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhc
Confidence 5789999999999999999999999864211 11 233332111 113456688
Q ss_pred cHHHHhcccceeeeecC-hhhHHHHHHHHHhh-------CCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 198 NYDVISTMKIHTFYNQP-SIESLNLITDNIIL-------NNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 198 p~s~~~~L~~~~F~~~~-~~~~l~~I~~~~l~-------~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
+...++++... +.+++ ..+-+..|++..+. .....+.+++.++++|.++.+..++++-.+.+.|+-++.
T Consensus 637 ~~~l~~R~~~~-i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 637 TPEFRNRLDNI-IWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp CHHHHTTCSEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred CHHHHhhCCcc-eeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 99999999544 44443 44556666666554 223357899999999999988888888888887776655
No 25
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=43.53 E-value=1.1e+02 Score=32.31 Aligned_cols=113 Identities=17% Similarity=0.129 Sum_probs=66.9
Q ss_pred CcEEEEeccCCCCCh-----------hhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecCh
Q psy177 147 DKLIIALQDYESFPC-----------SILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPS 215 (608)
Q Consensus 147 ~~LVIileD~EsFd~-----------~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~ 215 (608)
.|-||+|.+++++.+ .+++.|+..+......-+-++|+|.+..++ .++...++++....+--.+.
T Consensus 227 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~----~ld~al~rRf~~~i~i~~P~ 302 (444)
T 2zan_A 227 KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW----VLDSAIRRRFEKRIYIPLPE 302 (444)
T ss_dssp CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGG----GSCHHHHTTCCEEEECCCCC
T ss_pred CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcc----ccCHHHHhhcceEEEeCCcC
Confidence 588999999999833 355555543332221223456667665553 46677777775443333344
Q ss_pred hhHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 216 IESLNLITDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 216 ~~~l~~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
......|++..+-. .+..+....+..|..+.. .+|-..+...++-|.|
T Consensus 303 ~~~r~~il~~~l~~--~~~~l~~~~l~~la~~t~--G~sgadl~~l~~~a~~ 350 (444)
T 2zan_A 303 AHARAAMFRLHLGS--TQNSLTEADFQELGRKTD--GYSGADISIIVRDALM 350 (444)
T ss_dssp HHHHHHHHHHHHTT--SCEECCHHHHHHHHHHTT--TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 55556677776643 345677888888877643 4455555555555554
No 26
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=43.24 E-value=1.7e+02 Score=28.93 Aligned_cols=112 Identities=14% Similarity=0.177 Sum_probs=72.8
Q ss_pred cEEEEeccCCCCCh--hhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhccc-ceeeeecChhhHHHHHHH
Q psy177 148 KLIIALQDYESFPC--SILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMK-IHTFYNQPSIESLNLITD 224 (608)
Q Consensus 148 ~LVIileD~EsFd~--~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~-~~~F~~~~~~~~l~~I~~ 224 (608)
+-|++|.|.+.++. ...++|..++..+...=. .+|++-..++..+. .+.....+++. +..+.++++.+-...+++
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~-~iii~~~~~~~~l~-~l~~~L~sR~~~~~~i~l~~~~~e~~~il~ 176 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEK-QIILASDRHPQKLD-GVSDRLVSRFEGGILVEIELDNKTRFKIIK 176 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTC-EEEEEESSCGGGCT-TSCHHHHHHHHTSEEEECCCCHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCC-eEEEEecCChHHHH-HhhhHhhhcccCceEEEeCCCHHHHHHHHH
Confidence 67999999999987 778888888877654322 24443344444332 35666666663 244556554444455666
Q ss_pred HHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 225 NIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 225 ~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
..+... ++.+++.++.+|..+. .++..+...|.-++.
T Consensus 177 ~~~~~~--~~~l~~~~l~~l~~~~----g~~r~l~~~l~~~~~ 213 (324)
T 1l8q_A 177 EKLKEF--NLELRKEVIDYLLENT----KNVREIEGKIKLIKL 213 (324)
T ss_dssp HHHHHT--TCCCCHHHHHHHHHHC----SSHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCCCHHHHHHHHHhC----CCHHHHHHHHHHHHH
Confidence 665433 4678899999998876 677777777776554
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=42.93 E-value=1.7e+02 Score=30.07 Aligned_cols=126 Identities=16% Similarity=0.118 Sum_probs=71.3
Q ss_pred HHHHHHHhhCCCCcEEEEeccCCCC-----------ChhhHHHHHHHHHHhhccCCe-EEEEccccChHHHhhhccHHHH
Q psy177 135 NFQDYYNEIGCKDKLIIALQDYESF-----------PCSILNEFLLILHEYLVTLPF-ILILGVSTSPSIIHSTLNYDVI 202 (608)
Q Consensus 135 ~L~~Wy~~~~~~~~LVIileD~EsF-----------d~~VL~DlI~llSs~~~~IP~-vlIfGIATsv~~~~~~Lp~s~~ 202 (608)
.+...+.......|-||+|.|++.+ ...+++.|+..+.......+. ++|+|.+..++ .|+....
T Consensus 195 ~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~----~l~~~l~ 270 (389)
T 3vfd_A 195 LVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQ----ELDEAVL 270 (389)
T ss_dssp HHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGG----GCCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCch----hcCHHHH
Confidence 3444444332225789999999887 566777777777665554332 45555555444 5567777
Q ss_pred hcccc-eeeeecChhhHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHhh
Q psy177 203 STMKI-HTFYNQPSIESLNLITDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICILKH 269 (608)
Q Consensus 203 ~~L~~-~~F~~~~~~~~l~~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M~H 269 (608)
+++.. -.|..+ ...-...|++.++... ...+....+..|..... .++-..+..-+++|.+.-
T Consensus 271 ~R~~~~i~i~~p-~~~~r~~il~~~~~~~--~~~l~~~~~~~la~~~~--g~~~~~l~~L~~~a~~~~ 333 (389)
T 3vfd_A 271 RRFIKRVYVSLP-NEETRLLLLKNLLCKQ--GSPLTQKELAQLARMTD--GYSGSDLTALAKDAALGP 333 (389)
T ss_dssp TTCCEEEECCCC-CHHHHHHHHHHHHTTS--CCCSCHHHHHHHHHHTT--TCCHHHHHHHHHHHTTHH
T ss_pred cCcceEEEcCCc-CHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHH
Confidence 77653 334444 4444555677666543 34567777777776543 345445544455555543
No 28
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=42.74 E-value=92 Score=30.93 Aligned_cols=97 Identities=13% Similarity=0.185 Sum_probs=59.8
Q ss_pred EEEEeccCCCCChhhHHHHHHHHHHhhc---------cCCeEEEEccccChHHHhh--hccHHHHhcccc-eeeeecChh
Q psy177 149 LIIALQDYESFPCSILNEFLLILHEYLV---------TLPFILILGVSTSPSIIHS--TLNYDVISTMKI-HTFYNQPSI 216 (608)
Q Consensus 149 LVIileD~EsFd~~VL~DlI~llSs~~~---------~IP~vlIfGIATsv~~~~~--~Lp~s~~~~L~~-~~F~~~~~~ 216 (608)
-|+++.+++.+++.+.+.|..++.+..- .-++++| .++.+.-... .|+....+++.. -.|..+ +.
T Consensus 111 ~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~vi--at~np~~~~~~~~l~~~l~~Rf~~~i~i~~p-~~ 187 (331)
T 2r44_A 111 NFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVL--ATQNPVEQEGTYPLPEAQVDRFMMKIHLTYL-DK 187 (331)
T ss_dssp SEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEE--EEECTTCCSCCCCCCHHHHTTSSEEEECCCC-CH
T ss_pred cEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEE--EecCCCcccCcccCCHHHHhheeEEEEcCCC-CH
Confidence 4899999999999999999999987532 2234444 2333322222 388888888854 334444 34
Q ss_pred hHHHHHHHHHhhCCC--------------------CCcccCHHHHHHHHHHH
Q psy177 217 ESLNLITDNIILNNK--------------------FPLILHHTILEFLIDNF 248 (608)
Q Consensus 217 ~~l~~I~~~~l~~~~--------------------~p~~Lg~~v~~~Lld~F 248 (608)
+-...|++....... ....++..+++++.+..
T Consensus 188 ~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~ 239 (331)
T 2r44_A 188 ESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELV 239 (331)
T ss_dssp HHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 445556666543321 13456777777776644
No 29
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=42.18 E-value=63 Score=31.38 Aligned_cols=108 Identities=13% Similarity=0.063 Sum_probs=67.8
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
++-||+++|.+.++....+.|..++........ ++++++.+. .++....++...-.|...+. +-+..++...
T Consensus 102 ~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~---~i~~~~~~~----~l~~~l~sr~~~i~~~~~~~-~~~~~~l~~~ 173 (319)
T 2chq_A 102 PFKIIFLDEADALTADAQAALRRTMEMYSKSCR---FILSCNYVS----RIIEPIQSRCAVFRFKPVPK-EAMKKRLLEI 173 (319)
T ss_dssp CCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEE---EEEEESCGG----GSCHHHHTTCEEEECCCCCH-HHHHHHHHHH
T ss_pred CceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCe---EEEEeCChh----hcchHHHhhCeEEEecCCCH-HHHHHHHHHH
Confidence 588999999999999877776655543322222 233344433 45666667665444444444 3445566665
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
+... ++.+++..++.|... ...++...+..++-+.+
T Consensus 174 ~~~~--~~~i~~~~l~~l~~~---~~G~~r~~~~~l~~~~~ 209 (319)
T 2chq_A 174 CEKE--GVKITEDGLEALIYI---SGGDFRKAINALQGAAA 209 (319)
T ss_dssp HHTT--CCCBCHHHHHHHHHT---TTTCHHHHHHHHHHHHH
T ss_pred HHHc--CCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 5543 356899999988854 36778877777776543
No 30
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=36.12 E-value=1.6e+02 Score=29.19 Aligned_cols=108 Identities=12% Similarity=0.138 Sum_probs=73.4
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
.|-||++.+.+++++...+.|+.++..+.....|+++ ++.++ .++....++...-.|.-++.. -+..++..+
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~---t~~~~----~l~~~l~sR~~~~~~~~~~~~-~~~~~l~~~ 205 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMV---CDSMS----PIIAPIKSQCLLIRCPAPSDS-EISTILSDV 205 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEE---ESCSC----SSCHHHHTTSEEEECCCCCHH-HHHHHHHHH
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEE---eCCHH----HHHHHHHhhceEEecCCcCHH-HHHHHHHHH
Confidence 5679999999999999999999999988665444443 33332 355566666644445444443 344455555
Q ss_pred hhCCCCCcccC-HHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 227 ILNNKFPLILH-HTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 227 l~~~~~p~~Lg-~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
.... .+.+. +..+..|.... ..++...+..++-+.+
T Consensus 206 ~~~~--~~~~~~~~~l~~i~~~~---~G~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 206 VTNE--RIQLETKDILKRIAQAS---NGNLRVSLLMLESMAL 242 (354)
T ss_dssp HHHH--TCEECCSHHHHHHHHHH---TTCHHHHHHHHTHHHH
T ss_pred HHHc--CCCCCcHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 4332 35677 88888888654 7889999999987765
No 31
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=35.94 E-value=1.7e+02 Score=28.17 Aligned_cols=119 Identities=7% Similarity=0.036 Sum_probs=73.1
Q ss_pred CcEEEEeccCCCCChhh------------HHHHHHHHHHhh--------ccCCeEEEEccccChHHHhhhccHHHHhccc
Q psy177 147 DKLIIALQDYESFPCSI------------LNEFLLILHEYL--------VTLPFILILGVSTSPSIIHSTLNYDVISTMK 206 (608)
Q Consensus 147 ~~LVIileD~EsFd~~V------------L~DlI~llSs~~--------~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~ 206 (608)
++-||+|.+++.+.+.. .+.|+.++.... ..-++++|+. +.....-...++....+++.
T Consensus 116 ~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~~l~~R~~ 194 (310)
T 1ofh_A 116 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS-GAFQVARPSDLIPELQGRLP 194 (310)
T ss_dssp HHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE-ECCSSSCGGGSCHHHHHTCC
T ss_pred CCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc-CCcccCCcccCCHHHHhhCC
Confidence 36799999999999776 677777776432 1123444433 21000112357778888886
Q ss_pred ceeeeecC-hhhHHHHHHHH-----------HhhCCCCCcccCHHHHHHHHHHHhhc-----ccCHHHHHHHHHHHHH
Q psy177 207 IHTFYNQP-SIESLNLITDN-----------IILNNKFPLILHHTILEFLIDNFLFY-----DFSLHTFMKGVKICIL 267 (608)
Q Consensus 207 ~~~F~~~~-~~~~l~~I~~~-----------~l~~~~~p~~Lg~~v~~~Lld~F~~~-----d~Sv~~fi~~LK~a~M 267 (608)
..+.+++ ..+-+..|++. .+......+.+++.++++|..+.... ..++-.+.+.++-++.
T Consensus 195 -~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~ 271 (310)
T 1ofh_A 195 -IRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 271 (310)
T ss_dssp -EEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSH
T ss_pred -ceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHH
Confidence 3344443 23444455552 22224446789999999999987653 5788888887777654
No 32
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=35.13 E-value=1.2e+02 Score=30.66 Aligned_cols=78 Identities=14% Similarity=0.089 Sum_probs=55.3
Q ss_pred ccHHHHhcccceeeeecChhhHHHHHHHH-----------HhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHH
Q psy177 197 LNYDVISTMKIHTFYNQPSIESLNLITDN-----------IILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKIC 265 (608)
Q Consensus 197 Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~-----------~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a 265 (608)
+......++.....-.+...+.+..|+.. .+......+.+++.++++|.++-+..+.++-.+-+.++-+
T Consensus 239 ~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~ 318 (363)
T 3hws_A 239 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAA 318 (363)
T ss_dssp CCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred CCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHH
Confidence 77888888887764455566666666664 2233345688999999999998777777777777777777
Q ss_pred HHhhhhcCc
Q psy177 266 ILKHISMNN 274 (608)
Q Consensus 266 ~M~HFy~nP 274 (608)
++.-.+.-|
T Consensus 319 ~~~~l~~~~ 327 (363)
T 3hws_A 319 LLDTMYDLP 327 (363)
T ss_dssp HHHHHHSTT
T ss_pred HHHHHHhcc
Confidence 776555443
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=32.94 E-value=2.9e+02 Score=27.19 Aligned_cols=110 Identities=13% Similarity=0.099 Sum_probs=71.1
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhc---------------cCCeEEEEccccChHHHhhhccHHHHhcccceeee
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLV---------------TLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFY 211 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~---------------~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~ 211 (608)
.+-||+|.+.+.+++.+...|...+....- .+|-+.++|.++... .++....+++ ...+.
T Consensus 106 ~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~----~l~~~L~~R~-~~~i~ 180 (338)
T 3pfi_A 106 EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAG----MLSNPLRDRF-GMQFR 180 (338)
T ss_dssp TTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGG----GSCHHHHTTC-SEEEE
T ss_pred CCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCcc----ccCHHHHhhc-CEEee
Confidence 578999999999999999999998877642 233234445544432 3666777775 23344
Q ss_pred ecC-hhhHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Q psy177 212 NQP-SIESLNLITDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICI 266 (608)
Q Consensus 212 ~~~-~~~~l~~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~ 266 (608)
++. +.+-+..++....... +..+.+.+++.|.. ....++......++.+.
T Consensus 181 l~~~~~~e~~~il~~~~~~~--~~~~~~~~~~~l~~---~~~G~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 181 LEFYKDSELALILQKAALKL--NKTCEEKAALEIAK---RSRSTPRIALRLLKRVR 231 (338)
T ss_dssp CCCCCHHHHHHHHHHHHHHT--TCEECHHHHHHHHH---TTTTCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHH---HHCcCHHHHHHHHHHHH
Confidence 443 2344445666655443 35688999988887 33566766666666554
No 34
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=30.42 E-value=4e+02 Score=26.21 Aligned_cols=106 Identities=14% Similarity=0.137 Sum_probs=65.0
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
.+.||+|+|.+.++...++.|+.++..... -+.++++++... .++....++...-.|...+ .+-+..++...
T Consensus 119 ~~~vliiDe~~~l~~~~~~~Ll~~le~~~~---~~~~Il~~~~~~----~l~~~l~sr~~~i~~~~l~-~~~~~~~l~~~ 190 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPE---HVKFLLATTDPQ----KLPVTILSRCLQFHLKALD-VEQIRHQLEHI 190 (373)
T ss_dssp SSEEEEEECGGGSCHHHHHHHHHHHHSCCS---SEEEEEEESCGG----GSCHHHHTTSEEEECCCCC-HHHHHHHHHHH
T ss_pred CeEEEEEECcchhcHHHHHHHHHHHhcCCC---ceEEEEEeCChH----hCcHHHHhheeEeeCCCCC-HHHHHHHHHHH
Confidence 578999999999999999888877765322 223333444443 3455556655433344333 33445555555
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHH
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKIC 265 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a 265 (608)
+... +..+.+..++.|.+.. ..++......++-+
T Consensus 191 ~~~~--~~~~~~~a~~~l~~~~---~G~~r~~~~~l~~~ 224 (373)
T 1jr3_A 191 LNEE--HIAHEPRALQLLARAA---EGSLRDALSLTDQA 224 (373)
T ss_dssp HHHH--TCCBCHHHHHHHHHHS---SSCHHHHHHHHHHH
T ss_pred HHHc--CCCCCHHHHHHHHHHC---CCCHHHHHHHHHHH
Confidence 5433 3567888888887654 56676666666544
No 35
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=27.99 E-value=4.1e+02 Score=25.48 Aligned_cols=115 Identities=16% Similarity=0.194 Sum_probs=65.7
Q ss_pred CcEEEEeccCCCCC-----------hhhHHHHHHHHHHhhccC--CeEEEEccccChHHHhhhccHHHHhcccceeeeec
Q psy177 147 DKLIIALQDYESFP-----------CSILNEFLLILHEYLVTL--PFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQ 213 (608)
Q Consensus 147 ~~LVIileD~EsFd-----------~~VL~DlI~llSs~~~~I--P~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~ 213 (608)
.|-||+|.+.+++. ..+.+.|+..+..+...- .-++|+|.+..++ .|+....+++....+--.
T Consensus 113 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~----~l~~~l~~R~~~~i~~~~ 188 (297)
T 3b9p_A 113 QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ----ELDEAALRRFTKRVYVSL 188 (297)
T ss_dssp CSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG----GBCHHHHHHCCEEEECCC
T ss_pred CCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh----hCCHHHHhhCCeEEEeCC
Confidence 57899999998874 345666666655443221 1256667666564 456666666654433333
Q ss_pred ChhhHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHhh
Q psy177 214 PSIESLNLITDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICILKH 269 (608)
Q Consensus 214 ~~~~~l~~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M~H 269 (608)
+..+-...|++..+... +..+....++.|.... ..++-..+..-++.|.+.-
T Consensus 189 p~~~~r~~il~~~~~~~--~~~~~~~~~~~la~~~--~g~~~~~l~~l~~~a~~~a 240 (297)
T 3b9p_A 189 PDEQTRELLLNRLLQKQ--GSPLDTEALRRLAKIT--DGYSGSDLTALAKDAALEP 240 (297)
T ss_dssp CCHHHHHHHHHHHHGGG--SCCSCHHHHHHHHHHT--TTCCHHHHHHHHHHHTTHH
T ss_pred cCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence 44555566777766543 3346677777776643 3445545555555555443
No 36
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=27.42 E-value=3.3e+02 Score=27.42 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=53.2
Q ss_pred hhccHHHHhcccceeeeecC-hhhHHHHHHHH-----------HhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHH
Q psy177 195 STLNYDVISTMKIHTFYNQP-SIESLNLITDN-----------IILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGV 262 (608)
Q Consensus 195 ~~Lp~s~~~~L~~~~F~~~~-~~~~l~~I~~~-----------~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~L 262 (608)
..+.....+++... +.+++ ..+-+..|+.. .+......+.+++.++++|..+-+....++-.+.+.+
T Consensus 254 ~~~~p~l~~R~~~~-i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~l 332 (376)
T 1um8_A 254 YGLIPELIGRLPVL-STLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAII 332 (376)
T ss_dssp TTCCHHHHTTCCEE-EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHH
T ss_pred cCCChHHhcCCCce-eeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHH
Confidence 34677788888532 55554 33344444431 2222344688999999999998777778888888888
Q ss_pred HHHHHhhhhcCc
Q psy177 263 KICILKHISMNN 274 (608)
Q Consensus 263 K~a~M~HFy~nP 274 (608)
.-+++...+..|
T Consensus 333 e~~~~~~~~~~~ 344 (376)
T 1um8_A 333 EDFCLDIMFDLP 344 (376)
T ss_dssp HHHHHHHHHTGG
T ss_pred HHHHHHHHhhcc
Confidence 888887776544
No 37
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=27.06 E-value=3e+02 Score=31.67 Aligned_cols=138 Identities=12% Similarity=0.165 Sum_probs=82.9
Q ss_pred ccCCCh-HHHHHHHHhhCCCCcEEEEeccCCCCChhhHHHHHHHHHHhhc------c--CC-eEEEEccccChHH-----
Q psy177 128 KTHYDF-LNFQDYYNEIGCKDKLIIALQDYESFPCSILNEFLLILHEYLV------T--LP-FILILGVSTSPSI----- 192 (608)
Q Consensus 128 ~~~yDl-~~L~~Wy~~~~~~~~LVIileD~EsFd~~VL~DlI~llSs~~~------~--IP-~vlIfGIATsv~~----- 192 (608)
+..|+- ..+....... +.-||+|.+.|..++.+++-|+.++....- + .. .++|+--....+.
T Consensus 643 ~~G~~~~g~l~~~~~~~---~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~ 719 (854)
T 1qvr_A 643 YVGYEEGGQLTEAVRRR---PYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGL 719 (854)
T ss_dssp --------CHHHHHHHC---SSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHH
T ss_pred CcCccccchHHHHHHhC---CCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhc
Confidence 344443 3344444432 467999999999999999999999975431 1 11 2233321111111
Q ss_pred ----------------HhhhccHHHHhcccceeeeecChhhHHHHHHHHHhhC-------CCCCcccCHHHHHHHHHHHh
Q psy177 193 ----------------IHSTLNYDVISTMKIHTFYNQPSIESLNLITDNIILN-------NKFPLILHHTILEFLIDNFL 249 (608)
Q Consensus 193 ----------------~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~l~~-------~~~p~~Lg~~v~~~Lld~F~ 249 (608)
..+.+......++.......+...+-+..|++..+.. ....+.+++.++++|.++-+
T Consensus 720 ~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~ 799 (854)
T 1qvr_A 720 QKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGY 799 (854)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHC
T ss_pred ccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCC
Confidence 3556788888888444333445566666676665542 23357899999999999877
Q ss_pred hcccCHHHHHHHHHHHHHh
Q psy177 250 FYDFSLHTFMKGVKICILK 268 (608)
Q Consensus 250 ~~d~Sv~~fi~~LK~a~M~ 268 (608)
...+++-.+.+.++-+++.
T Consensus 800 ~~~gn~R~L~~~i~~~~~~ 818 (854)
T 1qvr_A 800 DPVFGARPLRRVIQRELET 818 (854)
T ss_dssp BTTTBTSTHHHHHHHHTHH
T ss_pred CCCCChHHHHHHHHHHHHH
Confidence 6566766666666665553
No 38
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=26.58 E-value=1.4e+02 Score=30.01 Aligned_cols=85 Identities=13% Similarity=0.126 Sum_probs=53.6
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
.+-||||++.+.++....+.|+..+.+.... +.++.+++.+ ..+++...++...-.|...+..+... ++...
T Consensus 108 ~~kvviIdead~l~~~a~naLLk~lEep~~~---~~~Il~t~~~----~~l~~ti~SRc~~~~~~~~~~~~~~~-~L~~~ 179 (334)
T 1a5t_A 108 GAKVVWVTDAALLTDAAANALLKTLEEPPAE---TWFFLATREP----ERLLATLRSRCRLHYLAPPPEQYAVT-WLSRE 179 (334)
T ss_dssp SCEEEEESCGGGBCHHHHHHHHHHHTSCCTT---EEEEEEESCG----GGSCHHHHTTSEEEECCCCCHHHHHH-HHHHH
T ss_pred CcEEEEECchhhcCHHHHHHHHHHhcCCCCC---eEEEEEeCCh----HhCcHHHhhcceeeeCCCCCHHHHHH-HHHHh
Confidence 5788999999999999999988877654322 2333345554 36777888887665565444444443 44443
Q ss_pred hhCCCCCcccCHHHHHHHHH
Q psy177 227 ILNNKFPLILHHTILEFLID 246 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld 246 (608)
. .+.+..+..+..
T Consensus 180 ~-------~~~~~~~~~l~~ 192 (334)
T 1a5t_A 180 V-------TMSQDALLAALR 192 (334)
T ss_dssp C-------CCCHHHHHHHHH
T ss_pred c-------CCCHHHHHHHHH
Confidence 2 345566555554
No 39
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=26.14 E-value=4.8e+02 Score=25.71 Aligned_cols=117 Identities=9% Similarity=0.149 Sum_probs=77.2
Q ss_pred EEEEeccCCCCChhhHHHHHHHHHHhh---------ccCCeEEEEccccCh-HHHh-hhccHHHHhcccceeeeecChhh
Q psy177 149 LIIALQDYESFPCSILNEFLLILHEYL---------VTLPFILILGVSTSP-SIIH-STLNYDVISTMKIHTFYNQPSIE 217 (608)
Q Consensus 149 LVIileD~EsFd~~VL~DlI~llSs~~---------~~IP~vlIfGIATsv-~~~~-~~Lp~s~~~~L~~~~F~~~~~~~ 217 (608)
-+++|.+.+.++..+...|+.++.... ....+.+|+.-..++ +.+. ..+......+|+.-.+.+++-.+
T Consensus 98 g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~e 177 (304)
T 1ojl_A 98 GTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQ 177 (304)
T ss_dssp SEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGG
T ss_pred CEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHH
Confidence 468899999999999999998887653 123344554333332 3333 46888899999988888887543
Q ss_pred H---HHHHHHHHhh----CCC-CCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 218 S---LNLITDNIIL----NNK-FPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 218 ~---l~~I~~~~l~----~~~-~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
. +..+++.++. ... ....+++.+++.|..+- ...+|..+...++.+++
T Consensus 178 R~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~--wpGnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 178 RREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYD--WPGNIRELENAIERAVV 233 (304)
T ss_dssp GGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCC--CSSHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCC--CCCCHHHHHHHHHHHHH
Confidence 2 2233333322 111 23578999999998753 35677888888887765
No 40
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=23.74 E-value=2.3e+02 Score=25.78 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=33.5
Q ss_pred cChhhHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHH
Q psy177 213 QPSIESLNLITDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKI 264 (608)
Q Consensus 213 ~~~~~~l~~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~ 264 (608)
.+++..|+.|.+..+...+ =+.++..|..|+.++..+.--.-++|.+
T Consensus 20 GP~~~~m~eIa~~T~~~~~-----~~~Im~~l~kRL~d~~k~Wr~vyKaL~l 66 (144)
T 1eyh_A 20 GPSSSLMSEIADLTYNVVA-----FSEIMSMIWKRLNDHGKNWRHVYKAMTL 66 (144)
T ss_dssp CCCHHHHHHHHHHTTSHHH-----HHHHHHHHHHHHSCCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCHhh-----HHHHHHHHHHHHccCCcchHHHhHHHHH
Confidence 4567788888887765322 2578899999998877666666666654
No 41
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=23.52 E-value=3.8e+02 Score=27.02 Aligned_cols=114 Identities=17% Similarity=0.202 Sum_probs=66.6
Q ss_pred CcEEEEeccCCCCCh-----------hhHHHHHHHHHHhhccCC-eEEEEccccChHHHhhhccHHHHhcccce-eeeec
Q psy177 147 DKLIIALQDYESFPC-----------SILNEFLLILHEYLVTLP-FILILGVSTSPSIIHSTLNYDVISTMKIH-TFYNQ 213 (608)
Q Consensus 147 ~~LVIileD~EsFd~-----------~VL~DlI~llSs~~~~IP-~vlIfGIATsv~~~~~~Lp~s~~~~L~~~-~F~~~ 213 (608)
.|-||+|.|.+.+.+ .+++.|+..+.......+ -++|+|.+..++ .++....+++... .|..
T Consensus 176 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~----~l~~~l~~Rf~~~i~i~~- 250 (357)
T 3d8b_A 176 QPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ----EIDEAARRRLVKRLYIPL- 250 (357)
T ss_dssp CSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG----GBCHHHHTTCCEEEECCC-
T ss_pred CCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh----hCCHHHHhhCceEEEeCC-
Confidence 588999999987733 566777776665443222 244555554443 4566677766533 2333
Q ss_pred ChhhHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHhh
Q psy177 214 PSIESLNLITDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICILKH 269 (608)
Q Consensus 214 ~~~~~l~~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M~H 269 (608)
+..+-...++..++... +..+....+..|.... ..+|-..+..-.++|.+.-
T Consensus 251 p~~~~r~~il~~~~~~~--~~~l~~~~l~~la~~t--~G~s~~dl~~l~~~a~~~~ 302 (357)
T 3d8b_A 251 PEASARKQIVINLMSKE--QCCLSEEEIEQIVQQS--DAFSGADMTQLCREASLGP 302 (357)
T ss_dssp CCHHHHHHHHHHHHHTS--CBCCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHTHH
T ss_pred cCHHHHHHHHHHHHhhc--CCCccHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence 34444555666666543 3457778888887764 3456566666666666543
No 42
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=20.04 E-value=3.9e+02 Score=25.82 Aligned_cols=109 Identities=7% Similarity=0.061 Sum_probs=65.2
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhcc---------------CCeEEEEccccChHHHhhhccHHHHhccc-ceee
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVT---------------LPFILILGVSTSPSIIHSTLNYDVISTMK-IHTF 210 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~---------------IP~vlIfGIATsv~~~~~~Lp~s~~~~L~-~~~F 210 (608)
.+-+|+|.|++.++......|..++....-. .|=+.++|.++... .+.....+++. .-.|
T Consensus 90 ~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~----~~~~~l~~R~~~~i~l 165 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG----LITAPLLSRFGIVEHL 165 (324)
T ss_dssp TTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCS----SCSCSTTTTCSCEEEC
T ss_pred CCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcc----cCCHHHHhcccEEEec
Confidence 4679999999999999999999888876421 12233444444333 23333444552 3334
Q ss_pred eecChhhHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHH
Q psy177 211 YNQPSIESLNLITDNIILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKIC 265 (608)
Q Consensus 211 ~~~~~~~~l~~I~~~~l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a 265 (608)
..++.. -+..+++...... +..+.+.+++.|..+. ..++..+...++.+
T Consensus 166 ~~~~~~-e~~~~l~~~~~~~--~~~~~~~~~~~l~~~~---~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 166 EYYTPE-ELAQGVMRDARLL--GVRITEEAALEIGRRS---RGTMRVAKRLFRRV 214 (324)
T ss_dssp CCCCHH-HHHHHHHHHHHTT--TCCCCHHHHHHHHHHS---CSCHHHHHHHHHHH
T ss_pred CCCCHH-HHHHHHHHHHHhc--CCCCCHHHHHHHHHHc---cCCHHHHHHHHHHH
Confidence 444433 3455666655443 3568888888887763 45665555555444
Done!