Query psy177
Match_columns 608
No_of_seqs 132 out of 202
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 20:45:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy177.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/177hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sxjd2 c.37.1.20 (D:26-262) R 77.4 8.9 0.00064 33.9 11.4 111 147-270 108-218 (237)
2 d1l8qa2 c.37.1.20 (A:77-289) C 65.2 12 0.00085 33.7 9.2 108 149-263 99-208 (213)
3 d1iqpa2 c.37.1.20 (A:2-232) Re 58.5 30 0.0022 30.3 10.7 108 147-267 109-216 (231)
4 d1sxjc2 c.37.1.20 (C:12-238) R 43.9 49 0.0036 28.6 9.5 107 147-266 99-205 (227)
5 d1sxjb2 c.37.1.20 (B:7-230) Re 37.7 96 0.007 26.6 10.5 109 147-268 101-209 (224)
6 d1qvra3 c.37.1.20 (A:536-850) 36.3 1.1E+02 0.0078 28.7 11.2 145 126-279 106-289 (315)
7 d1ny5a2 c.37.1.20 (A:138-384) 32.2 1.6E+02 0.012 26.2 11.4 116 150-267 97-231 (247)
8 d1sxje2 c.37.1.20 (E:4-255) Re 31.2 1E+02 0.0074 26.6 9.5 111 147-269 131-241 (252)
9 d1fnna2 c.37.1.20 (A:1-276) CD 21.2 2.3E+02 0.016 23.9 11.1 119 147-267 124-251 (276)
10 d1r6bx3 c.37.1.20 (X:437-751) 16.7 3.5E+02 0.025 24.6 10.6 144 127-278 103-283 (315)
No 1
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=77.45 E-value=8.9 Score=33.85 Aligned_cols=111 Identities=14% Similarity=0.026 Sum_probs=78.4
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
+.-||++.+++......-+.+..++..+.....|+++..- . ..++....++...-.|.-.+..+ +..+++++
T Consensus 108 ~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~---~----~~~~~~l~sr~~~i~f~~~~~~~-~~~~L~~i 179 (237)
T d1sxjd2 108 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY---V----TRIIDPLASQCSKFRFKALDASN-AIDRLRFI 179 (237)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC---G----GGSCHHHHHHSEEEECCCCCHHH-HHHHHHHH
T ss_pred CceEEEEecccccCHHHHHHHhhccccccccccccccccc---c----ccccccccchhhhhccccccccc-cchhhhhh
Confidence 4558999999999999999999888888666555443222 2 23445556665555566555554 44577777
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHhhh
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICILKHI 270 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M~HF 270 (608)
+.... +.+.+.+++.|.... ++++-..+..|+.+++.+-
T Consensus 180 ~~~e~--i~i~~~~l~~ia~~s---~gd~R~ai~~L~~~~~~~~ 218 (237)
T d1sxjd2 180 SEQEN--VKCDDGVLERILDIS---AGDLRRGITLLQSASKGAQ 218 (237)
T ss_dssp HHTTT--CCCCHHHHHHHHHHT---SSCHHHHHHHHHHTHHHHH
T ss_pred hhhhc--CcCCHHHHHHHHHHc---CCCHHHHHHHHHHHHHhch
Confidence 76544 678999999998765 6889999999998876544
No 2
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Probab=65.17 E-value=12 Score=33.69 Aligned_cols=108 Identities=15% Similarity=0.134 Sum_probs=69.8
Q ss_pred EEEEeccCCCCCh--hhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 149 LIIALQDYESFPC--SILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 149 LVIileD~EsFd~--~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
=+|+|+|.+.+.. ..=..|..++.... .-.-.+|+.=..+++.+...+|+=..++-.+-.+.++++.+-.-+++++.
T Consensus 99 dll~iDDi~~i~~~~~~~~~lf~lin~~~-~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p~d~~~~~iL~~~ 177 (213)
T d1l8qa2 99 DLLLLDDVQFLSGKERTQIEFFHIFNTLY-LLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIELDNKTRFKIIKEK 177 (213)
T ss_dssp SEEEEECGGGGTTCHHHHHHHHHHHHHHH-HTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCCCHHHHHHHHHHH
T ss_pred cchhhhhhhhhcCchHHHHHHHHHHHHHh-hccceEEEecCCcchhccccchHHHHHhhCceEEEECCCcHHHHHHHHHH
Confidence 4788999998864 33333555554433 33333555555567777666665555555667888877777666778777
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHH
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVK 263 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK 263 (608)
...- .+.|+..++.+|..++. |+-.+..+|+
T Consensus 178 a~~r--gl~l~~~v~~yl~~~~~----~~R~L~~~l~ 208 (213)
T d1l8qa2 178 LKEF--NLELRKEVIDYLLENTK----NVREIEGKIK 208 (213)
T ss_dssp HHHT--TCCCCHHHHHHHHHHCS----SHHHHHHHHH
T ss_pred HHHc--CCCCCHHHHHHHHHhcC----cHHHHHHHHH
Confidence 6543 58999999999998752 4555544443
No 3
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=58.45 E-value=30 Score=30.25 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=75.1
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
.+.||+++|++.+....-.-|..++..+...++|++. +... ..++....++...-.|.-+.. .-+..+++.+
T Consensus 109 ~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~---~n~~----~~i~~~l~sR~~~i~~~~~~~-~~~~~~l~~~ 180 (231)
T d1iqpa2 109 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILS---CNYS----SKIIEPIQSRCAIFRFRPLRD-EDIAKRLRYI 180 (231)
T ss_dssp SCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEE---ESCG----GGSCHHHHHTEEEEECCCCCH-HHHHHHHHHH
T ss_pred CceEEeehhhhhcchhHHHHHhhhcccCCcceEEEec---cCCh----hhchHhHhCccccccccccch-hhHHHHHHHH
Confidence 6889999999999999888888888777655544332 2222 345566666666555555444 4445566666
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
+... .+.+....++.+.... ++++-..+..|+.+.+
T Consensus 181 ~~~e--~i~i~~~~l~~I~~~~---~gdiR~ai~~Lq~~~~ 216 (231)
T d1iqpa2 181 AENE--GLELTEEGLQAILYIA---EGDMRRAINILQAAAA 216 (231)
T ss_dssp HHTT--TCEECHHHHHHHHHHH---TTCHHHHHHHHHHHHT
T ss_pred HHHh--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 6544 4678899999988764 5688888888888765
No 4
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=43.90 E-value=49 Score=28.59 Aligned_cols=107 Identities=13% Similarity=0.183 Sum_probs=72.4
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
..-||++.+++......-+-|..++..+.... .++.+++... .++....++...-.|.-.+.. -+..++.++
T Consensus 99 ~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~---~~~~~~~~~~----~i~~~i~sr~~~i~~~~~~~~-~i~~~l~~I 170 (227)
T d1sxjc2 99 GFKLIILDEADAMTNAAQNALRRVIERYTKNT---RFCVLANYAH----KLTPALLSQCTRFRFQPLPQE-AIERRIANV 170 (227)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTE---EEEEEESCGG----GSCHHHHTTSEEEECCCCCHH-HHHHHHHHH
T ss_pred CeEEEEEeccccchhhHHHHHHHHhhhcccce---eeccccCcHH----HhHHHHHHHHhhhcccccccc-ccccccccc
Confidence 45689999999999999999888887765432 2222333322 355556666655556655554 455677777
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICI 266 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~ 266 (608)
+... .+.+.+..++.+..+. ++++-..+..|+.+.
T Consensus 171 ~~~e--~i~i~~~~l~~i~~~s---~Gd~R~ain~Lq~~~ 205 (227)
T d1sxjc2 171 LVHE--KLKLSPNAEKALIELS---NGDMRRVLNVLQSCK 205 (227)
T ss_dssp HHTT--TCCBCHHHHHHHHHHH---TTCHHHHHHHTTTTT
T ss_pred cccc--cccCCHHHHHHHHHHc---CCcHHHHHHHHHHHH
Confidence 6654 3678999999988765 467877887777543
No 5
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=37.68 E-value=96 Score=26.64 Aligned_cols=109 Identities=11% Similarity=0.077 Sum_probs=69.3
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
++-||++++.+.+....-+-|...+.......+|+++- +.. ..++....++...-.|.-++.. -+..++..+
T Consensus 101 ~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~---~~~----~~i~~~l~sr~~~i~~~~~~~~-~i~~~l~~i 172 (224)
T d1sxjb2 101 KHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFAC---NQS----NKIIEPLQSQCAILRYSKLSDE-DVLKRLLQI 172 (224)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEE---SCG----GGSCHHHHTTSEEEECCCCCHH-HHHHHHHHH
T ss_pred ceEEEEEecccccchhHHHHHhhhccccccceeeeecc---Cch----hhhhhHHHHHHHHhhhcccchh-hhHHHHHHH
Confidence 56788999999999987666665555544444443332 222 2344556665554445544444 444555555
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHh
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICILK 268 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M~ 268 (608)
.... .+.+.+..+..+... .++++-..+..|+.+...
T Consensus 173 ~~~e--~~~i~~~~l~~I~~~---s~Gd~R~ai~~Lq~~~~~ 209 (224)
T d1sxjb2 173 IKLE--DVKYTNDGLEAIIFT---AEGDMRQAINNLQSTVAG 209 (224)
T ss_dssp HHHH--TCCBCHHHHHHHHHH---HTTCHHHHHHHHHHHHHH
T ss_pred HHhc--ccCCCHHHHHHHHHH---cCCcHHHHHHHHHHHHHc
Confidence 5544 367888888877665 478999999999987653
No 6
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=36.29 E-value=1.1e+02 Score=28.66 Aligned_cols=145 Identities=12% Similarity=0.150 Sum_probs=86.0
Q ss_pred ccccCCCh-HHHHHHHHhhCCCCcEEEEeccCCCCChhhHHHHHHHHHHhhc------cCC---eEEEEccccCh-----
Q psy177 126 LKKTHYDF-LNFQDYYNEIGCKDKLIIALQDYESFPCSILNEFLLILHEYLV------TLP---FILILGVSTSP----- 190 (608)
Q Consensus 126 ~~~~~yDl-~~L~~Wy~~~~~~~~LVIileD~EsFd~~VL~DlI~llSs~~~------~IP---~vlIfGIATsv----- 190 (608)
++|..|+- ..|..+.++. |.=||.|+++|-.++.|.+-|..++..-.- .+. .++|+.-..-.
T Consensus 106 ~gyvG~~~~~~l~~~~~~~---p~~Vvl~DEieK~~~~v~~~ll~~l~~g~~~~~~gr~v~~~~~i~i~tsnlG~~~i~~ 182 (315)
T d1qvra3 106 PGYVGYEEGGQLTEAVRRR---PYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILE 182 (315)
T ss_dssp ----------CHHHHHHHC---SSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHH
T ss_pred CCCcCcccCChHHHHHHhC---CCcEEEEehHhhcCHHHHHHHHHHhccCceeCCCCcEecCcceEEEEecccChHHHhh
Confidence 56777764 4678888765 467999999999999999999988854311 222 34444221111
Q ss_pred ----------------HHHhhhccHHHHhcccce-eeeecChhhHHHHHHHH-------HhhCCCCCcccCHHHHHHHHH
Q psy177 191 ----------------SIIHSTLNYDVISTMKIH-TFYNQPSIESLNLITDN-------IILNNKFPLILHHTILEFLID 246 (608)
Q Consensus 191 ----------------~~~~~~Lp~s~~~~L~~~-~F~~~~~~~~l~~I~~~-------~l~~~~~p~~Lg~~v~~~Lld 246 (608)
..++..+++..+.++..- .|.-- +.+.+.+|++. -+......+.+++.+..+|.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L-~~~~~~~I~~~~l~~l~~rl~~~~i~l~i~~~~~~~L~~ 261 (315)
T d1qvra3 183 GLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPL-TKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAE 261 (315)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCC-CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred hcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccch-hhhhhHHHHHHHHHHHHHHHHhccccccccHHHHHHHHH
Confidence 135677999999999755 34433 33444455432 234445689999999999999
Q ss_pred HHhhcccCHHHHHHHHHHHHHhhhhcCchhhhh
Q psy177 247 NFLFYDFSLHTFMKGVKICILKHISMNNINALC 279 (608)
Q Consensus 247 ~F~~~d~Sv~~fi~~LK~a~M~HFy~nPLSvL~ 279 (608)
+-.+-.+..-.+-+.|+- | -.+|+|-.+
T Consensus 262 ~~y~~~~GAR~L~r~Ie~----~-i~~~La~~i 289 (315)
T d1qvra3 262 RGYDPVFGARPLRRVIQR----E-LETPLAQKI 289 (315)
T ss_dssp HHCBTTTBTSTHHHHHHH----H-THHHHHHHH
T ss_pred hCCCCCCCcchHHHHHHH----H-HHHHHHHHH
Confidence 855555544444433332 2 246666544
No 7
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=32.20 E-value=1.6e+02 Score=26.20 Aligned_cols=116 Identities=8% Similarity=0.059 Sum_probs=79.3
Q ss_pred EEEeccCCCCChhhHHHHHHHHHHhh---------ccCCeEEEEccccChHHH--hhhccHHHHhcccceeeeecChhhH
Q psy177 150 IIALQDYESFPCSILNEFLLILHEYL---------VTLPFILILGVSTSPSII--HSTLNYDVISTMKIHTFYNQPSIES 218 (608)
Q Consensus 150 VIileD~EsFd~~VL~DlI~llSs~~---------~~IP~vlIfGIATsv~~~--~~~Lp~s~~~~L~~~~F~~~~~~~~ 218 (608)
.++|++.|..+..+-.-|..++.... ....+.+|++-..+++.+ ++.+......+|.+..+.+++=.++
T Consensus 97 tL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~~~~~~~~~~~RlI~~s~~~l~~l~~~~~f~~~L~~~l~~~~i~lPpLreR 176 (247)
T d1ny5a2 97 TLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRER 176 (247)
T ss_dssp EEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGC
T ss_pred EEEEeChHhCCHHHHHHHHHHHHhCCEEECCCCCceecCeEEEEecCCCHHHHHHcCCCcHHHHhhcCeeeecCCChhhc
Confidence 58889999999999888888886421 134566777766665543 3358999999999999999985443
Q ss_pred H-------HHHHHHHhhCCCC-CcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q psy177 219 L-------NLITDNIILNNKF-PLILHHTILEFLIDNFLFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 219 l-------~~I~~~~l~~~~~-p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M 267 (608)
- +.++..+-..... +..|++.+++.|..+-+ -..+..+.+.++-+.+
T Consensus 177 ~~Di~~l~~~~l~~~~~~~~~~~~~ls~~al~~L~~~~W--PGNl~EL~~~l~~a~~ 231 (247)
T d1ny5a2 177 KEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPW--YGNVRELKNVIERAVL 231 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCC--TTHHHHHHHHHHHHHH
T ss_pred hhhHhhhhhhhhhhhhhhcCCCCCCCCHHHHHHHHhCCC--CCHHHHHHHHHHHHHH
Confidence 2 3334444333333 35799999999976332 3456677777766654
No 8
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.24 E-value=1e+02 Score=26.59 Aligned_cols=111 Identities=13% Similarity=0.138 Sum_probs=70.1
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhccCCeEEEEccccChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNI 226 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~ 226 (608)
...+|+|++.+.....-.+.+..++..+.....|++ ++++. ..++....++...-+|..+... -+-.+++.+
T Consensus 131 ~~~iiiide~d~l~~~~~~~l~~~~e~~~~~~~~Il---~tn~~----~~i~~~l~sR~~~i~~~~~~~~-~~~~~l~~i 202 (252)
T d1sxje2 131 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIM---VCDSM----SPIIAPIKSQCLLIRCPAPSDS-EISTILSDV 202 (252)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEE---EESCS----CSSCHHHHTTSEEEECCCCCHH-HHHHHHHHH
T ss_pred CceEEEeccccccccccchhhhccccccccccccee---eeccc----cchhhhhhcchheeeecccchh-hHHHHHHHH
Confidence 456899999999999988888888887765544333 34443 3456666666654445444444 444555666
Q ss_pred hhCCCCCcccCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHhh
Q psy177 227 ILNNKFPLILHHTILEFLIDNFLFYDFSLHTFMKGVKICILKH 269 (608)
Q Consensus 227 l~~~~~p~~Lg~~v~~~Lld~F~~~d~Sv~~fi~~LK~a~M~H 269 (608)
+.....++ ....+++.|.. ...+++-..+..|+.+.+.+
T Consensus 203 ~~~e~~~~-~~~~~l~~i~~---~s~Gd~R~ai~~Lq~~~~~~ 241 (252)
T d1sxje2 203 VTNERIQL-ETKDILKRIAQ---ASNGNLRVSLLMLESMALNN 241 (252)
T ss_dssp HHHHTCEE-CCSHHHHHHHH---HHTTCHHHHHHHHTHHHHTT
T ss_pred HHHcCCCC-CcHHHHHHHHH---HcCCcHHHHHHHHHHHHHcC
Confidence 65443322 13455566554 34578888888888877743
No 9
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=21.23 E-value=2.3e+02 Score=23.93 Aligned_cols=119 Identities=12% Similarity=0.028 Sum_probs=68.5
Q ss_pred CcEEEEeccCCCCChhhHHHHHHHHHHhhc--cCCeEEEEccccChHHHhhhccHHHHhcccceeeeecC-hhhHHHHHH
Q psy177 147 DKLIIALQDYESFPCSILNEFLLILHEYLV--TLPFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQP-SIESLNLIT 223 (608)
Q Consensus 147 ~~LVIileD~EsFd~~VL~DlI~llSs~~~--~IP~vlIfGIATsv~~~~~~Lp~s~~~~L~~~~F~~~~-~~~~l~~I~ 223 (608)
...++++.+.+.+.....+++..++..+.. ..++. +.|+++....... +.....+++....+.+++ ..+-+..|+
T Consensus 124 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~-~~~~~~~r~~~~~i~~~~~~~~e~~~il 201 (276)
T d1fnna2 124 LYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIA-LVIVGHNDAVLNN-LDPSTRGIMGKYVIRFSPYTKDQIFDIL 201 (276)
T ss_dssp CCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEE-EEEEESSTHHHHT-SCHHHHHHHTTCEEECCCCBHHHHHHHH
T ss_pred cccccchhHHHHhhhhhhhhHHHHHhccccccccceE-EeecCCchhhhhh-cchhhhhhhcchhccccchhHHHHHHHH
Confidence 577888889999999988888877765433 33343 3566666555544 444455554444444442 333333344
Q ss_pred HHHhhCCCCCcccCHHHHHHHHHHH------hhcccCHHHHHHHHHHHHH
Q psy177 224 DNIILNNKFPLILHHTILEFLIDNF------LFYDFSLHTFMKGVKICIL 267 (608)
Q Consensus 224 ~~~l~~~~~p~~Lg~~v~~~Lld~F------~~~d~Sv~~fi~~LK~a~M 267 (608)
...+........++..+++.+.+.- .....++-..+..++.|.+
T Consensus 202 ~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~G~~R~a~~ll~~a~~ 251 (276)
T d1fnna2 202 LDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 251 (276)
T ss_dssp HHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccHHHHHHHHHHhhhhhhhhhcCCCHHHHHHHHHHHHH
Confidence 4433322233457889999887753 2234556666666665543
No 10
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=16.72 E-value=3.5e+02 Score=24.65 Aligned_cols=144 Identities=9% Similarity=0.119 Sum_probs=90.2
Q ss_pred cccCCChH-HHHHHHHhhCCCCcEEEEeccCCCCChhhHHHHHHHHHHhh------ccCC---eEEEEc--ccc------
Q psy177 127 KKTHYDFL-NFQDYYNEIGCKDKLIIALQDYESFPCSILNEFLLILHEYL------VTLP---FILILG--VST------ 188 (608)
Q Consensus 127 ~~~~yDl~-~L~~Wy~~~~~~~~LVIileD~EsFd~~VL~DlI~llSs~~------~~IP---~vlIfG--IAT------ 188 (608)
+|..|+-. .+..+..+. +.-||.|+++|-.++.|.+-|+.+|..-. ..++ .++||. +..
T Consensus 103 gy~g~~~~~~l~~~~~~~---~~~vvl~DeieKa~~~V~~~lLqild~G~ltd~~Gr~vdf~n~iiI~Tsnig~~~i~~~ 179 (315)
T d1r6bx3 103 GYVGFDQGGLLTDAVIKH---PHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERK 179 (315)
T ss_dssp CSHHHHHTTHHHHHHHHC---SSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----
T ss_pred CccccccCChhhHHHHhC---ccchhhhcccccccchHhhhhHHhhccceecCCCCCccCccceEEEeccchhhHHHHhh
Confidence 44444432 355566544 56799999999999999999999996421 1233 233331 110
Q ss_pred ------------ChHHHhhhccHHHHhcccceeeeecChhhHHHHHHHHHhh-------CCCCCcccCHHHHHHHHHHHh
Q psy177 189 ------------SPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNIIL-------NNKFPLILHHTILEFLIDNFL 249 (608)
Q Consensus 189 ------------sv~~~~~~Lp~s~~~~L~~~~F~~~~~~~~l~~I~~~~l~-------~~~~p~~Lg~~v~~~Lld~F~ 249 (608)
..+.+...++++.+.++..-..--+-+.+-+..|++..+. .-...+.++..+..+|.+.-.
T Consensus 180 ~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~~~l~~~~~~l~~~~i~l~~~~~a~~~l~~~~y 259 (315)
T d1r6bx3 180 SIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGY 259 (315)
T ss_dssp ------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHC
T ss_pred hccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHhCC
Confidence 0234667899999999985444444455566666555432 234578899999999999766
Q ss_pred hcccCHHHHHHHHHHHHHhhhhcCchhhh
Q psy177 250 FYDFSLHTFMKGVKICILKHISMNNINAL 278 (608)
Q Consensus 250 ~~d~Sv~~fi~~LK~a~M~HFy~nPLSvL 278 (608)
+-.++.-.+-+.|+= .-.+|+|-.
T Consensus 260 d~~~GaR~L~r~Ie~-----~i~~~la~~ 283 (315)
T d1r6bx3 260 DRAMGARPMARVIQD-----NLKKPLANE 283 (315)
T ss_dssp BTTTBTTTHHHHHHH-----HHTHHHHHH
T ss_pred CCCCChhhHHHHHHH-----HHHHHHHHH
Confidence 666665555554432 225677643
Done!