RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy177
(608 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.0 bits (173), Expect = 6e-13
Identities = 85/629 (13%), Positives = 173/629 (27%), Gaps = 192/629 (30%)
Query: 79 HHDFLNFQDYYNEIGCKDKLIIVTQSDTPVESSKASDVESDEDVEVNLKKTHYDFLNFQD 138
HH ++F+ ++ KD I+ D V++ DV+ D + L K D +
Sbjct: 3 HHHHMDFETGEHQYQYKD--ILSVFEDAFVDNFDCKDVQ-DMPKSI-LSKEEIDHIIMSK 58
Query: 139 YYNEIGCKDKLIIALQDYESFPCSILNEFLLILHEYLVTLPFILILGVSTSPSIIHSTLN 198
+ + +L L + ++ +F+ + N
Sbjct: 59 --DAVSGTLRLFWTLLSKQE---EMVQKFVEEVLRI-----------------------N 90
Query: 199 YDVISTMKIHTFYNQPSIESLNLITDNIILNN---KFP---------------------- 233
Y + + I T QPS+ + I L N F
Sbjct: 91 YKFLMS-PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 234 ---LILH------HTIL--EFLIDNFLFYDFSLHTFMKGVKICILKHISMNNINALCYNI 282
+++ T + + + + F +K C + + L Y I
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 283 MN--QTLTKQMINANM-LNEIKE-----------------LDSVAKLSIKK--------- 313
+ + N + ++ I+ L +V
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 314 -----------LDSNGVVKYSIELFEFITNMYSSLQCLFALV-----YDLPN-----NPL 352
L + S++ L DLP NP
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTNPR 328
Query: 353 -----GKQLRDIYCI------VLSEKVFVESSTFKQCLQLIQFISKQELLEKC------- 394
+ +RD V +K+ ++ + L +++ +++ ++
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKL---TTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 395 ------LQLI----QFISKQELLEKVKSIILILNQNKN-----------LKTVLEEVQKL 433
L LI ++ K+ L+ Q K LK LE L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 434 QQEIKNADTEVQIKHKNDISKLN------------LTPKSRAQLKQNLLESIKQDKLQFE 481
+ I + + +D+ L + + L + D F
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE-RMTLFRMVFLD---FR 501
Query: 482 FDIKREKFSIKQDKLQFEFDIKREKFVQYLIKNLFRNYFTPIQNMPLHEIVLFSDCHLLK 541
F +++ K I+ D + +Q L ++ Y N P +E ++ + L
Sbjct: 502 F-LEQ-K--IRHDSTAWNASGSILNTLQQLKF--YKPYICD--NDPKYERLVNAILDFLP 553
Query: 542 KY---LAGAPRAAI-HTALNNPN--YYMQ 564
K L + + AL + + +
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIFEE 582
Score = 70.3 bits (171), Expect = 1e-12
Identities = 83/609 (13%), Positives = 173/609 (28%), Gaps = 172/609 (28%)
Query: 121 DVEVNLKKTHY-DFL--NFQDYYNEIGCKD-----KLIIALQDYESFPCSILNEFLLILH 172
D E + Y D L + + CKD K I++ ++ + I+ +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH----IIMSKDAVSG 63
Query: 173 EYLVTLPFILIL--GVSTSPSIIHSTL--NYDVISTMKIHTFYNQPSIESLNLITDNIIL 228
+ F +L + L NY + + I T QPS+ + I L
Sbjct: 64 TLRL---FWTLLSKQEEMVQKFVEEVLRINYKFLMS-PIKTEQRQPSMMTRMYIEQRDRL 119
Query: 229 NN---KFP-------------------------LILH------HTIL--EFLIDNFLFYD 252
N F +++ T + + + +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 253 FSLHTFMKGVKICILKHISMNNINALCYNIMN--QTLTKQMINANM-LNEIKE------- 302
F +K C + + L Y I + + N + ++ I+
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 303 ----------LDSVAKLSIKK--------------------LDSNGVVKYSIELFEFITN 332
L +V L + S++
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 333 MYSSLQCLFALV-----YDLPN-----NPL-----GKQLRDIYCIVLSEKVFVESSTFKQ 377
L DLP NP + +RD +T+
Sbjct: 300 PDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD------------GLATWDN 346
Query: 378 CLQLIQFISKQELLEKCLQLIQFISKQELLEKVKSIILILNQNKNLKT-VLEEVQKLQQE 436
+ + ++E L +++ +++ ++ + + + ++ T +L + +
Sbjct: 347 -WKHVNCDKLTTIIESSLNVLEPAEYRKMFDR----LSVFPPSAHIPTILLS---LIWFD 398
Query: 437 IKNADTEVQIKHKNDISKLNLTPKSRAQLKQNLLESIKQDKLQFEFDIKREKFSIKQDKL 496
+ +D V + L S + KQ +I + E +K E +
Sbjct: 399 VIKSDVMVVVNK--------LHKYSLVE-KQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 497 QFEFDIKREKFVQYLIKNLFRNYF--------TPIQNMPLHEIVLFS----DCHLLKKYL 544
++I + LI YF I++ + LF D L++ +
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH--PERMTLFRMVFLDFRFLEQKI 507
Query: 545 -----AGAPRAAIHTALNNPNYYMQ--CDCCKVNDP--SEMLPSMPDVSLAYKLHLESAT 595
A +I L +Y CD NDP ++ ++ D + +L +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICD----NDPKYERLVNAILDFLPKIEENLICSK 563
Query: 596 MINIHDWLQ 604
++ L+
Sbjct: 564 YTDL---LR 569
Score = 50.6 bits (120), Expect = 1e-06
Identities = 73/531 (13%), Positives = 146/531 (27%), Gaps = 148/531 (27%)
Query: 130 HYDF-LNFQDYYNEIGCKDKLIIALQDY-ESFPCSILNEFLLILHEYLVTLPFILILGVS 187
H DF Y KD L + + ++F C + +
Sbjct: 6 HMDFETGEHQY----QYKDILSVFEDAFVDNFDCKDVQDMPK------------------ 43
Query: 188 TSPSIIHSTLNYDVISTMKIHTFYNQPS-IESLNLITDNIILNNKFPLILHHTILEFLID 246
++S +I + + L +K ++ + E L
Sbjct: 44 ------------SILSKEEIDHIIMSKDAVSGTLRLFW--TLLSKQEEMVQKFVEEVLRI 89
Query: 247 NFLFYDF---SLHTFMKGVKICILKHISMNNINALCYNIMNQTLTKQMIN-ANMLNEIKE 302
N Y F + T + + +I + YN NQ K ++ ++++
Sbjct: 90 N---YKFLMSPIKTEQRQPSMMTRMYIEQRDR---LYND-NQVFAKYNVSRLQPYLKLRQ 142
Query: 303 LDSVAKLSIKKLDSNGVVKYSIELFEFITNMYSS-LQCLFALVYDLPNNPLGKQLRD-IY 360
++ +L V I + S + V + + ++ I+
Sbjct: 143 -------ALLELRPAKNV--------LIDGVLGSGKTWVALDV--CLSYKVQCKMDFKIF 185
Query: 361 CIVLSEKVFVESSTFKQCLQLIQFISKQELLEKCLQLIQFISKQELLEKVKSIILILNQN 420
+ L + + LQ + + + + ++ +L
Sbjct: 186 WLNLK-NCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 421 KNLKTVLEEVQKLQ---------------QEIKNAD-------TEVQIKHKND------- 451
+N VL VQ + + + D T + + H +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 452 ----ISKLNLTPKS--RAQLKQNLL------ESIKQDKLQFEFDIKREKFSIKQDKLQFE 499
+ L+ P+ R L N ESI+ ++ K + DKL
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKH----VNCDKL--- 355
Query: 500 FDIKREKFVQYLIKNLFRNYFTPIQNMPLHEIVLF-SDCHLLKKYLAGAPRAAIHTALNN 558
E + L +R F + +F H+ P + +
Sbjct: 356 -TTIIESSLNVLEPAEYRKMF--------DRLSVFPPSAHI--------PTILLSLIWFD 398
Query: 559 PNYY----MQCDCCK---VN-DPSEMLPSMPDVSLAYKLHLESATMINIHD 601
+ K V P E S+P + L K+ LE+ +H
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN--EYALHR 447
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 2e-08
Identities = 80/565 (14%), Positives = 156/565 (27%), Gaps = 215/565 (38%)
Query: 179 PFILILGVSTSPSIIHSTLNYDVISTMKIHTFYNQPSIESLNLITDNIILNN-------- 230
P L G S ++ T ++ + S ++ F + L T+ ++
Sbjct: 8 PLTLSHG-SLEHVLLVPTASFFIASQLQ-EQF-----NKILPEPTEGFAADDEPTTPAEL 60
Query: 231 --KFPLILHHT--------------ILEFLIDNFLFYDFSLHTFMKGVKICILKHISMNN 274
KF L + +L + F + +++G N+
Sbjct: 61 VGKF---LGYVSSLVEPSKVGQFDQVLNLCLTEFE------NCYLEG-----------ND 100
Query: 275 INALCYNIMNQTLTKQMINANMLNEIKELDSVAKLSIKKLDSNGVVKYSIELFEFITNMY 334
I+AL ++ + T + ++ +AK K ++ LF +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA-------LFRAVGEGN 153
Query: 335 SSLQCLFALVYDLPNNPLGKQ---------LRDIY---------CIVLSEKVFVE----- 371
+ L +F G Q LRD+Y I S + E
Sbjct: 154 AQLVAIF-----------GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 372 ---SSTFKQCLQLIQFISK------QELLEKC---------LQLIQFI--------SKQE 405
F Q L +++++ ++ L +QL ++ + E
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 406 LLEKVKSIILILNQ----------------NKNLKTVLE-------EVQK---------- 432
L +K +++ + +
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 433 -LQQEIKN--------------ADTEVQ--IKHKND---------ISKLN------LT-- 458
L+ ++N +VQ + N IS +N ++
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 459 PKSRAQLKQNLLESIKQDKLQFEFDIKREKFSIKQDKLQFEFDIKREKFVQYLIKNLFRN 518
P+S L L K D R FS + KL+F ++L
Sbjct: 383 PQSLYGLNLT-LRKAKAPS---GLDQSRIPFS--ERKLKFS--------NRFL------- 421
Query: 519 YFTPIQNMPLHEIVLFSDCHLLKKYLAGAPRAAIHTALNNPNYYMQC--DCCKVNDPSEM 576
P+ P H +L L+ K L + + P Y D ++ +
Sbjct: 422 ---PV-ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG--SI 475
Query: 577 LPSMPDVSLAYKLHLESATMINI-H 600
+ D + + E+ T H
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKATH 500
Score = 30.4 bits (68), Expect = 2.0
Identities = 29/161 (18%), Positives = 45/161 (27%), Gaps = 66/161 (40%)
Query: 412 SIILILNQNKNLKTVLEEVQKLQQEIKNADTEVQIKHKNDISKLNLTPKSRAQLKQNLLE 471
SI+ I+ N T+ +K ++ I+ + + + D
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKR-IRENYSAMIFETIVD-------------------G 1699
Query: 472 SIKQDKLQFEFDIKREKFSIKQDKLQFEFDIKREKFVQYLIKNLFRNYFTPIQNMP---L 528
+K +K+ F E + F + + L FT Q P L
Sbjct: 1700 KLKTEKI---FKEINEHST----SYTFRSE--KGL--------LSATQFT--Q--PALTL 1738
Query: 529 HEIVLFSDCHLLKK--------YLAGAPRAAIH-----TAL 556
E F D LK AG H AL
Sbjct: 1739 MEKAAFED---LKSKGLIPADATFAG------HSLGEYAAL 1770
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple
helical bundle, actin cappin binding, alternative
splicing, calcium; 2.30A {Homo sapiens}
Length = 149
Score = 33.7 bits (77), Expect = 0.066
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Query: 387 KQELLEKCLQLIQFISKQELLEKVKSIILILNQNKNLKTVLEEVQKLQQEIKNADTEVQI 446
+++ LE + F E LEK L + ++N K +Q Q+ + + EVQ
Sbjct: 38 RRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDENYKD-PTNLQGKLQKHQAFEAEVQ- 95
Query: 447 KHKNDISKLNLTPKSRAQLKQNLLESIKQ--DKLQFEFDIKREKFSIKQDKLQ 497
+ I KL+ T E+I+ +L ++++ EK K KL
Sbjct: 96 ANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQWELLLEKMREKGIKLL 148
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 34.0 bits (78), Expect = 0.13
Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 418 NQNKNLKTVLEEVQKLQQEIKNADTEVQIKHKNDISKLNLTPKSRAQLKQNLLES 472
+ K ++ +LEEV+ L+Q + D QI+ +++ ++N +R Q + +
Sbjct: 2 SGQKTVQKILEEVRILEQIGVSHDA--QIQELSEMWRVNQQFVTRLQQQLVDIRQ 54
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.26
Identities = 6/21 (28%), Positives = 12/21 (57%), Gaps = 6/21 (28%)
Query: 308 KLSIKKLDSNGVVKYSIELFE 328
K ++KKL + S++L+
Sbjct: 19 KQALKKLQA------SLKLYA 33
Score = 31.5 bits (70), Expect = 0.39
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 16/41 (39%)
Query: 289 KQMINANMLNEIKELDSVAKL----SIKKLDSNGVVKYSIE 325
KQ +K+L + KL S L +K ++E
Sbjct: 19 KQ--------ALKKLQASLKLYADDSAPAL----AIKATME 47
Score = 28.8 bits (63), Expect = 3.4
Identities = 7/18 (38%), Positives = 8/18 (44%), Gaps = 1/18 (5%)
Query: 540 LKKYLAG-APRAAIHTAL 556
LK Y AP AI +
Sbjct: 29 LKLYADDSAPALAIKATM 46
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 31.5 bits (71), Expect = 0.73
Identities = 11/90 (12%), Positives = 32/90 (35%), Gaps = 2/90 (2%)
Query: 387 KQELLEKCLQLIQFISK-QELLEKVKSIILILNQNKNLKTVLEEVQKLQQEIKNADTEVQ 445
++ LE L Q + +L + + L+ + + + V L+ + ++ E
Sbjct: 102 RKRKLENMYHLFQLKRETDDLEQWISEKELVA-SSPEMGQDFDHVTLLRDKFRDFARETG 160
Query: 446 IKHKNDISKLNLTPKSRAQLKQNLLESIKQ 475
+ + +N + + +I +
Sbjct: 161 AIGQERVDNVNAFIERLIDAGHSEAATIAE 190
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 30.2 bits (68), Expect = 1.0
Identities = 15/100 (15%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
Query: 416 ILNQNKNLKTVLEEVQKLQQEIKNADTEVQIKHKNDISKLNLTPKSRAQLKQNLLESIKQ 475
+ Q V L+ E K +E+Q + + D+ +++ + Q++ +
Sbjct: 14 LFQQVAQKTGVS---NTLENEFKGRASELQ-RMETDL-------QAKMKKLQSMKAGSDR 62
Query: 476 DKLQFEFDIKREKFSIKQDKLQFEFDIKREKFVQYLIKNL 515
KL+ + +R+ F+ K + + + + L+ +
Sbjct: 63 TKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRI 102
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 30.7 bits (69), Expect = 1.0
Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 5/113 (4%)
Query: 388 QELLEKCLQLIQFISK-QELLEKVKSIILILNQNKNLKTVLEEVQKLQQEIKNADTEVQI 446
L +F+S ++L+ + I +++ ++ K V + L + + TE+
Sbjct: 6 HHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDV-TGAEALLERHQEHRTEID- 63
Query: 447 KHKNDISKLNLTPKSRAQLKQNLLESIKQ--DKLQFEFDIKREKFSIKQDKLQ 497
+ IKQ D L E + + ++ L
Sbjct: 64 ARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLD 116
Score = 28.7 bits (64), Expect = 4.8
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 376 KQCLQLIQFISK-QELLEKCLQLIQFISKQELLEKVKSIILILNQNKNLK---------- 424
L +F+S ++L+ + +S EL + V +L +++ +
Sbjct: 10 HDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTF 69
Query: 425 -TVLEEVQKLQQEIKNADTEVQIK 447
+ Q+L A E++ K
Sbjct: 70 QAFEQFGQQLLAHGHYASPEIKQK 93
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 30.7 bits (68), Expect = 1.6
Identities = 16/122 (13%), Positives = 47/122 (38%), Gaps = 4/122 (3%)
Query: 388 QELLEKCLQLIQFISKQELLEKVKSIILILNQNKNLKTVLEEVQKLQQEIKNADTEVQIK 447
L + +L I + ++ LK++L + ++++E + + +++
Sbjct: 527 VLLCKPEPELNAAIPSANPAKTMQ----GSEVVNVLKSLLSNLDEVKKEREGLENDLKSV 582
Query: 448 HKNDISKLNLTPKSRAQLKQNLLESIKQDKLQFEFDIKREKFSIKQDKLQFEFDIKREKF 507
+ + SK + + L + D++ K ++ KQ+ L + ++F
Sbjct: 583 NFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEF 642
Query: 508 VQ 509
+
Sbjct: 643 SK 644
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix
bundle, alpha helix repeat, helical linker, actin
capping; 2.80A {Homo sapiens} PDB: 1owa_A
Length = 161
Score = 29.5 bits (66), Expect = 1.7
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 387 KQELLEKCLQLIQFISKQELLEKVKSIILILNQNKNLKTVLEEVQKLQQEIKNADTEVQI 446
+ + LE L F + L K + + +K+ + +Q Q+ ++ + EVQ
Sbjct: 48 RGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDKSYED-PTNIQGKYQKHQSLEAEVQ- 105
Query: 447 KHKNDISKLNLTPKSRAQLKQNLLESIKQ--DKLQFEFDIKREKFSIKQDKLQ 497
+S+L T + R + + E K ++L+ +D+ E K D+L
Sbjct: 106 TKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHLWDLLLELTLEKGDQLL 158
>2fwt_A DHC, diheme cytochrome C; diheme protein, electron transfer,
sphaeroides heme protein, oxygen-binding, electron
transpor; HET: HEM; 1.85A {Rhodobacter sphaeroides}
Length = 125
Score = 28.8 bits (64), Expect = 2.7
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 557 NNPNYYMQCDCCKVNDPSEMLPS------MPDVSLAY--KLHLESATMINIHDWLQSFA 607
+P +C C + P+ +LP+ M D+ + L+ A+ I +L + A
Sbjct: 5 TDPLTRTECSACHMAYPAALLPARSWTALMADLPNHFGEDASLDEASRGQIESYLVANA 63
>2fw5_A DHC, diheme cytochrome C; electron transfer, electron transport;
HET: HEM; 2.00A {Rhodobacter sphaeroides}
Length = 139
Score = 28.8 bits (64), Expect = 2.8
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 556 LNNPNYYMQCDCCKVNDPSEMLPS------MPDVSLAY--KLHLESATMINIHDWLQSFA 607
+ +P +C C + P+ +LP+ M D+ + L+ A+ I +L + A
Sbjct: 15 VTDPLTRTECSACHMAYPAALLPARSWTALMADLPNHFGEDASLDEASRGQIESYLVANA 74
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 29.0 bits (65), Expect = 5.3
Identities = 19/132 (14%), Positives = 53/132 (40%), Gaps = 13/132 (9%)
Query: 387 KQELLEKCLQLIQFISKQELL------EKVKSIILILNQNKNLKTVLEEVQKLQQEIKNA 440
K+++ ++ L L + + ++E EKV + I ++ + ++ KL +E K
Sbjct: 950 KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL 1009
Query: 441 DTEVQ---IKHKNDISKLNLTPKSRAQLKQ---NLLESIKQDKLQFEFDIKREKFSIKQD 494
+ V + K K + + + L +K+++ + ++++ K ++ +
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQ-ELEKIKRKLEGE 1068
Query: 495 KLQFEFDIKREK 506
I +
Sbjct: 1069 SSDLHEQIAELQ 1080
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division
inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas
aeruginosa} SCOP: c.32.1.1 d.79.2.1
Length = 320
Score = 28.7 bits (65), Expect = 6.1
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 404 QELLEKVKSIILILNQNKNLKTVLEEVQKLQQEIKNAD 441
+ L E V S+I I N+ L T+L + L AD
Sbjct: 152 RALAESVDSLITIPNE--KLLTILGKDASLLAAFAKAD 187
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein,
tubulin homolog, nucleotide-binding, GTPase, septation,
cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa}
SCOP: c.32.1.1 d.79.2.1
Length = 394
Score = 28.4 bits (64), Expect = 6.7
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 404 QELLEKVKSIILILNQNKNLKTVLEEVQKLQQEIKNAD 441
+ L E V S+I I N+ L T+L + L AD
Sbjct: 152 RALAESVDSLITIPNE--KLLTILGKDASLLAAFAKAD 187
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 28.9 bits (65), Expect = 6.8
Identities = 12/113 (10%), Positives = 45/113 (39%), Gaps = 11/113 (9%)
Query: 387 KQELLEKCLQLIQFISKQELLEKVKSIILILNQNKNLKTVLEEVQKLQQEIKNADTEVQI 446
+ + L L ++E+ + K + + K ++ ++ + +++ + E
Sbjct: 979 AKNATNRVLSL-----QEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNT 1033
Query: 447 KHKNDISKLNLTPKSRAQLKQNLLESIKQDKLQFEFDIKREKFSIKQDKLQFE 499
K + +LN ++ E + + + + K+ + + ++L+++
Sbjct: 1034 LLKTEKEELN------RRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 28.3 bits (63), Expect = 7.5
Identities = 20/113 (17%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 388 QELLEKCLQLIQFISK-QELLEKVKSIILILNQNKNLKTVLEEVQKLQQEIKNADTEVQI 446
+ L + +L QF + +K L++ +++ L VQ L+++ K + E+
Sbjct: 102 RAKLNESHRLHQFFRDMDDEESWIKEKKLLV-SSEDYGRDLTGVQNLRKKHKRLEAELA- 159
Query: 447 KHKNDISKLNLTPKSRAQLKQNLLESIKQ--DKLQFEFDIKREKFSIKQDKLQ 497
H+ I + T K + E I+Q + + ++ + + +L+
Sbjct: 160 AHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLE 212
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport,
nucleus, phosphoprotein, protein transport,
translocation, polymorphism; 2.53A {Homo sapiens} PDB:
3i4r_A 3cqg_A
Length = 270
Score = 28.2 bits (62), Expect = 7.7
Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 354 KQLRDIY---CIVLSEKVFVESSTFKQCLQLIQFI-SKQELLEKCLQLIQFISKQELLEK 409
LR + L + + +++CLQL + S++ L + ++LL+K
Sbjct: 192 VLLRKLCLPMLCFLLHTILHSTGQYQECLQLADMVSSERHKLYLVFSKEEL---RKLLQK 248
Query: 410 V-KSIILILNQNKN 422
+ +S +++L+Q +
Sbjct: 249 LRESSLMLLDQGLD 262
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.384
Gapped
Lambda K H
0.267 0.0539 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,741,992
Number of extensions: 514927
Number of successful extensions: 1154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1131
Number of HSP's successfully gapped: 88
Length of query: 608
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 509
Effective length of database: 3,937,614
Effective search space: 2004245526
Effective search space used: 2004245526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.3 bits)