RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy177
(608 letters)
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 28.7 bits (64), Expect = 0.54
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 395 LQLIQFISKQELL--EKVKSIILILNQNKNLKTVLEEVQKLQQEIKNADTEVQIKHKNDI 452
+QL QF+ ELL S I N K + + A + K K ++
Sbjct: 6 IQLWQFL--LELLSDSANASCITWEGTNGEFKMTDPD--------EVARRWGERKSKPNM 55
Query: 453 SKLNLTPKSRAQLKQNLLESIKQDKLQFEFDIK 485
+ L+ R +N++ + + ++FD
Sbjct: 56 NYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFH 88
>d3b8oa1 d.58.60.1 (A:55-319) Lipopolysaccharide biosynthesis
protein WzzE {Escherichia coli [TaxId: 562]}
Length = 265
Score = 29.6 bits (66), Expect = 0.97
Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Query: 388 QELLEKCLQLIQFISKQELLEKVKSIILILNQN-KNLKTVLEEVQK--LQQEIKNADTEV 444
LL + + + L +++K K EEV K + + + + +
Sbjct: 119 NNLLRQYVAFASQRAASHLNDELKGAWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQAL 178
Query: 445 QIKHKNDISKLNLTPKSRAQLKQNLLESIKQDKLQFEFDIKRE 487
+I +++IS+ + T +L + + + + LQ + +
Sbjct: 179 KIAEQHNISR-SATDVPAEELPDSEMFLLGRPMLQARLENLQA 220
>d2dpka1 b.1.27.1 (A:370-502) Sodium/calcium exchanger 1 {Dog
(Canis familiaris) [TaxId: 9615]}
Length = 133
Score = 28.3 bits (62), Expect = 1.2
Identities = 17/67 (25%), Positives = 23/67 (34%)
Query: 10 VLEARAMDLTPTRDITTVDTIAPAIMDREAAMGRYLLSNDSTQSDTPVESSKASDVESDE 69
+ + T D T D A A D E G + TQ + V E DE
Sbjct: 26 IRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKPGETQKEIRVGIIDDDIFEEDE 85
Query: 70 DVEVNLK 76
+ V+L
Sbjct: 86 NFLVHLS 92
>d3b8pa1 d.58.60.1 (A:54-292) Chain length determinant protein WzzB
{Salmonella typhimurium [TaxId: 90371]}
Length = 239
Score = 28.4 bits (63), Expect = 2.5
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 11/131 (8%)
Query: 388 QELLEKCLQLIQFISKQELLEKVKSII-LILNQNKNLKTVLEEVQKLQQE--IKNADTEV 444
Q L + +Q + +EL +K I L + E V + Q++ IK + +
Sbjct: 92 QRRLAEYIQQVDEEVAKELEVDLKDNITLQTKTLQESLETQEVVAQEQKDLRIKQIEEAL 151
Query: 445 QIKHKNDISKLNLTPKSRAQLKQNLLESIKQDKLQFEFDIKREKFSIKQDKLQFEFDIKR 504
+ + I++ + + Q+ + + D L+ L F +
Sbjct: 152 RYADEAKITQPQIQ--QTQDVTQDTMFLLGSDALKSMIQN------EATRPLVFSPAYYQ 203
Query: 505 EKFVQYLIKNL 515
K IKNL
Sbjct: 204 TKQTLLDIKNL 214
>d1v66a_ a.140.2.1 (A:) p53 binding domain of protein inhibitor of
activated STAT protein 1, PIAS-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 25.5 bits (56), Expect = 3.9
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 386 SKQELLEKCLQLIQFISKQELLEKVKSI 413
K ELL K L L++ + K+K +
Sbjct: 33 RKHELLTKALHLLKAGCSPAVQMKIKEL 60
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 27.8 bits (61), Expect = 4.2
Identities = 47/351 (13%), Positives = 111/351 (31%), Gaps = 45/351 (12%)
Query: 172 HEYLVTLPFILILGVSTSPSIIHSTLNYDVISTMKIH---------TFYNQPSIESLNLI 222
+Y+ L FI +LG + + +++S+ + + + E + LI
Sbjct: 48 KKYVCKLLFIFLLGHDIDFGHMEAV---NLLSSNRYTEKQIGYLFISVLVNSNSELIRLI 104
Query: 223 TDNII--LNNKFPLI---------------LHHTILEFLIDNFLFYDFSLHTFMKGVKIC 265
+ I L ++ P + + + D +C
Sbjct: 105 NNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQS-AALC 163
Query: 266 ILKHISMNNINALCYNIMNQTLTK-----QMINANMLNEIKELDSVAKLSIKKLDSNGVV 320
+L+ + + ++ + + + I L K S V
Sbjct: 164 LLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVS 223
Query: 321 KYSIELFEFITNMYSSLQCLFALVYDLPNNPLGKQLRDIYCIVLSEKVFVESSTFKQCLQ 380
+ L +T+ + LQ Y +P L +L + + +CL+
Sbjct: 224 R----LSRIVTSASTDLQDY--TYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLE 277
Query: 381 LIQFISKQELLEKCLQLIQFISKQELLEKVKSIILILNQNKNLKTVLEEVQKLQQEIKNA 440
I +++ K +Q L E + II ++ L +L Q +++
Sbjct: 278 TILNKAQEPPKSKKVQH-SNAKNAVLFEAISLIIHHDSEPNLLVRA---CNQLGQFLQHR 333
Query: 441 DTEVQIKHKNDISKLNLTPKSRAQLKQNLLESIKQDKLQFEFDIKREKFSI 491
+T ++ + L + S +K ++ I K + + +++ +
Sbjct: 334 ETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDL 384
>d2cxfa1 a.256.1.1 (A:83-249) Rap2 interacting protein X (RUFY3)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 167
Score = 26.8 bits (59), Expect = 6.1
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 296 MLNEIKELDSVAKLSIKKLDSNGVVKYSIELFEFITNMYSSLQCLFALV 344
M NE L ++AKLSIK L ++ ++ L + + Y+ LQ F ++
Sbjct: 1 MANERMNLMNMAKLSIKGL-----IESALNLGRTLDSDYAPLQQFFVVM 44
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 26.2 bits (57), Expect = 8.7
Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 12/117 (10%)
Query: 387 KQELLEKCLQLIQFISK-QELLEKVKSIILILNQN-----KNLKTVLEEVQKLQQEIKNA 440
+ + LE L F +L + + + IL N++ ++ Q L+ E++
Sbjct: 45 RGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTK 104
Query: 441 DTEVQIKHKNDISKLNLTPKSRAQLKQNLLESIKQDKLQFEFDIKREKFSIKQDKLQ 497
+ K + + + + K ++L+ +D+ E K D+L
Sbjct: 105 SRLMSELEKTREERFTMGHSAHEETKA------HIEELRHLWDLLLELTLEKGDQLL 155
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE
{Escherichia coli [TaxId: 562]}
Length = 267
Score = 26.5 bits (58), Expect = 9.7
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 388 QELLEKCLQLIQFISKQELLEKVKSIILILNQN-KNLKTVLEEVQKLQQE--IKNADTEV 444
Q +L + I + +E +E V++ + I Q K K Q + I+ + +
Sbjct: 122 QTVLSGYIDYISALVVKESIENVRNKLEIKTQFEKEKLAQDRIKMKNQLDANIQRLNYSL 181
Query: 445 QIKHKNDISK 454
I + I K
Sbjct: 182 DIANAAGIKK 191
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.384
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,148,972
Number of extensions: 102115
Number of successful extensions: 308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 32
Length of query: 608
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 517
Effective length of database: 1,158,166
Effective search space: 598771822
Effective search space used: 598771822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.9 bits)