BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17702
(454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/429 (81%), Positives = 386/429 (89%), Gaps = 1/429 (0%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHV 60
MREIVH+Q GQCGNQIG+KFWEVIS+EHGI G+Y+GDSDLQLERI VYYN+AA +V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 61 PRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVV 120
PRA+LVDLEPGTMD+++SG +G+IFRPDNFV+GQSGAGNNWAKGHYTEGAELVD ++DVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDTVV 180
R+ESE+CDCLQGFQ KIR+EYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 181 EPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240
EPYNA LSVHQL+E+TDETYCIDNEALYDIC RTLKL TPTY DLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMM 300
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSR S QYR+LTVPELTQQMFDAKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
Query: 301 VACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKG 359
ACDPRHG+YLTVAA+FRG+MSMKEVDEQM+N Q KN+ Y+VEWIPNNVKTAVCDIPP+G
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 360 LKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVIS 419
LKMS TFIGN+TAIQ LFKRISEQFT+MFRRKAFLHWYTGEGMDEMEF+E+ SN+ D++S
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 420 EYQQYQEAT 428
EYQQYQ+AT
Sbjct: 421 EYQQYQDAT 429
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/429 (81%), Positives = 386/429 (89%), Gaps = 1/429 (0%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHV 60
MREIVH+Q GQCGNQIG+KFWEVIS+EHGI G+Y+GDSDLQLERI VYYN+AA +V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 61 PRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVV 120
PRA+LVDLEPGTMD+++SG +G+IFRPDNFV+GQSGAGNNWAKGHYTEGAELVD ++DVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDTVV 180
R+ESE+CDCLQGFQ KIR+EYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 181 EPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240
EPYNA LSVHQL+E+TDETYCIDNEALYDIC RTLKL TPTY DLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMM 300
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSR S QYR+LTVPELTQQMFDAKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
Query: 301 VACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKG 359
ACDPRHG+YLTVAA+FRG+MSMKEVDEQM+N Q KN+ Y+VEWIPNNVKTAVCDIPP+G
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 360 LKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVIS 419
LKMS TFIGN+TAIQ LFKRISEQFT+MFRRKAFLHWYTGEGMDEMEF+E+ SN+ D++S
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 420 EYQQYQEAT 428
EYQQYQ+AT
Sbjct: 421 EYQQYQDAT 429
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/427 (81%), Positives = 384/427 (89%), Gaps = 1/427 (0%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHV 60
MREIVH+Q GQCGNQIG+KFWEVIS+EHGI G+Y+GDSDLQLERI VYYN+AA +V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 61 PRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVV 120
PRA+LVDLEPGTMD+++SG +G+IFRPDNFV+GQSGAGNNWAKGHYTEGAELVD ++DVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDTVV 180
R+ESE+CDCLQGFQ KIR+EYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 181 EPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240
EPYNA LSVHQL+E+TDETYCIDNEALYDIC RTLKL TPTY DLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMM 300
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSR S QYR+LTVPELTQQMFDAKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
Query: 301 VACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKG 359
ACDPRHG+YLTVAA+FRG+MSMKEVDEQM+N Q KN+ Y+VEWIPNNVKTAVCDIPP+G
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 360 LKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVIS 419
LKMS TFIGN+TAIQ LFKRISEQFT+MFRRKAFLHWYTGEGMDEMEF+E+ SN+ D++S
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 420 EYQQYQE 426
EYQQYQ+
Sbjct: 421 EYQQYQD 427
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/429 (80%), Positives = 385/429 (89%), Gaps = 1/429 (0%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHV 60
MREIVH+Q GQCGNQIG+KFWEVIS+EHGI G+Y+GDSDLQLERI VYYN+A +V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVV 120
PRA+LVDLEPGTMD+++SG +G+IFRPDNFV+GQSGAGNNWAKGHYTEGAELVD ++DVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDTVV 180
R+ESE+CDCLQGFQ KIR+EYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 181 EPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240
EPYNA LSVHQL+E+TDETYCIDNEALYDIC RTLKL TPTY DLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMM 300
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSR S QYR+LTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 301 VACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKG 359
ACDPRHG+YLTVAAIFRG+MSMKEVDEQM+N Q KN+ Y+VEWIPNNVKTAVCDIPP+G
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 360 LKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVIS 419
LKMS TFIGN+TAIQ LFKRISEQFT+MFRRKAFLHWYTGEGMDEMEF+E+ SN+ D++S
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 420 EYQQYQEAT 428
EYQQYQ+AT
Sbjct: 421 EYQQYQDAT 429
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/431 (80%), Positives = 385/431 (89%), Gaps = 1/431 (0%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHV 60
MREIVH+Q GQCGNQIG+KFWEVIS+EHGI G+Y+GDSDLQLERI VYYN+A +V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVV 120
PRA+LVDLEPGTMD+++SG +G+IFRPDNFV+GQSGAGNNWAKGHYTEGAELVD ++DVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDTVV 180
R+ESE+CDCLQGFQ KIR+EYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 181 EPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240
EPYNA LSVHQL+E+TDETY IDNEALYDIC RTLKL TPTY DLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMM 300
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSR S QYR+LTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 301 VACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKG 359
ACDPRHG+YLTVAAIFRG+MSMKEVDEQM+N Q KN+ Y+VEWIPNNVKTAVCDIPP+G
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 360 LKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVIS 419
LKMS TFIGN+TAIQ LFKRISEQFT+MFRRKAFLHWYTGEGMDEMEF+E+ SN+ D++S
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 420 EYQQYQEATID 430
EYQQYQ+AT D
Sbjct: 421 EYQQYQDATAD 431
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/429 (80%), Positives = 384/429 (89%), Gaps = 1/429 (0%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHV 60
MREIVH+Q GQCGNQIG+KFWEVIS+EHGI G+Y+GDSDLQLERI VYYN+A +V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVV 120
PRA+LVDLEPGTMD+++SG +G+IFRPDNFV+GQSGAGNNWAKGHYTEGAELVD ++DVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDTVV 180
R+ESE+CDCLQGFQ KIR+EYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 181 EPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240
EPYNA LSVHQL+E+TDETY IDNEALYDIC RTLKL TPTY DLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMM 300
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSR S QYR+LTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 301 VACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKG 359
ACDPRHG+YLTVAA+FRG+MSMKEVDEQM+N Q KN+ Y+VEWIPNNVKTAVCDIPP+G
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 360 LKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVIS 419
LKMS TFIGN+TAIQ LFKRISEQFT+MFRRKAFLHWYTGEGMDEMEF+E+ SN+ D++S
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 420 EYQQYQEAT 428
EYQQYQ+AT
Sbjct: 421 EYQQYQDAT 429
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/429 (80%), Positives = 384/429 (89%), Gaps = 1/429 (0%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHV 60
MREIVH+Q GQCGNQIG+KFWEVIS+EHGI G+Y+GDSDLQLERI VYYN+A +V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVV 120
PRA+LVDLEPGTMD+++SG +G+IFRPDNFV+GQSGAGNNWAKGHYTEGAELVD ++DVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDTVV 180
R+ESE+CDCLQGFQ KIR+EYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 181 EPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240
EPYNA LSVHQL+E+TDETY IDNEALYDIC RTLKL TPTY DLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMM 300
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSR S QYR+LTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 301 VACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKG 359
ACDPRHG+YLTVAAIFRG+MSMKEVDEQM+N Q KN+ Y+VEWIPNNVKTAVCDIPP+G
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 360 LKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVIS 419
LKMS TFIGN+TAIQ LFKRISEQFT+MFRRKAFLHWYTGEGMDEMEF+E+ SN+ D++S
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 420 EYQQYQEAT 428
EYQQYQ+AT
Sbjct: 421 EYQQYQDAT 429
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/429 (80%), Positives = 384/429 (89%), Gaps = 1/429 (0%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHV 60
MREIVH+Q GQCGNQIG+KFWEVIS+EHGI G+Y+GDSDLQLERI VYYN+A +V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVV 120
PRA+LVDLEPGTMD+++SG +G+IFRPDNFV+GQSGAGNNWAKGHYTEGAELVD ++DVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDTVV 180
R+ESE+CDCLQGFQ KIR+EYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 181 EPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240
EPYNA LSVHQL+E+TDETY IDNEALYDIC RTLKL TPTY DLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMM 300
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSR S QYR+LTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 301 VACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKG 359
ACDPRHG+YLTVAA+FRG+MSMKEVDEQM+N Q KN+ Y+VEWIPNNVKTAVCDIPP+G
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 360 LKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVIS 419
LKMS TFIGN+TAIQ LFKRISEQFT+MFRRKAFLHWYTGEGMDEMEF+E+ SN+ D++S
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 420 EYQQYQEAT 428
EYQQYQ+AT
Sbjct: 421 EYQQYQDAT 429
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/429 (80%), Positives = 383/429 (89%), Gaps = 1/429 (0%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHV 60
MREIVH+Q GQCGNQIG+KFWEVIS+EHGI G+Y+GDSDLQLERI VYYN+A +V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVV 120
PRA+LVDLEPGTMD+++SG +G+IFRPDNFV+GQSGAGNNWAKGHYTEGAELVD ++DVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDTVV 180
R+ESE+CDCLQGFQ KIR+EYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 181 EPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240
EPYNA LSVHQL+E+TDETY IDNEALYDIC RTLKL TPTY DLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMM 300
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSR S QYR+LTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 301 VACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKG 359
ACDPRHG+YLTVA IFRG+MSMKEVDEQM+N Q KN+ Y+VEWIPNNVKTAVCDIPP+G
Sbjct: 301 AACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 360 LKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVIS 419
LKMS TFIGN+TAIQ LFKRISEQFT+MFRRKAFLHWYTGEGMDEMEF+E+ SN+ D++S
Sbjct: 361 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 420 EYQQYQEAT 428
EYQQYQ+AT
Sbjct: 421 EYQQYQDAT 429
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 289/432 (66%), Positives = 357/432 (82%), Gaps = 1/432 (0%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHV 60
MREI+H+ GQCGNQIG+ FWE I EHG+ NGTY+G D+Q ER+ VY+N+A++G V
Sbjct: 1 MREIIHISTGQCGNQIGAAFWETICGEHGLDFNGTYHGHDDIQKERLNVYFNEASSGKWV 60
Query: 61 PRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVV 120
PR++ VDLEPGT+DA+++ G +FRPDN+++GQS AGN WAKGHYTEGAELVD +MDV+
Sbjct: 61 PRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAELVDSVMDVI 120
Query: 121 RRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDTVV 180
RRE+E CD LQGFQ KIR+E+PDR+M TFSV+PSPK SDT V
Sbjct: 121 RREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSPKRSDTRV 180
Query: 181 EPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240
EPYNA LSVHQL+EH+DET+CIDNEALYDIC RTLKL P+Y DLN+LVS+ MSGVTT L
Sbjct: 181 EPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNNLVSSVMSGVTTSL 240
Query: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMM 300
R+PGQLN+DLRKLAVN+VPFPRLHFFM G+APLT+ S +RSLTVPELTQQMFDAKNMM
Sbjct: 241 RYPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPLTAIGSQSFRSLTVPELTQQMFDAKNMM 300
Query: 301 VACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKG 359
A DPR+G+YLTVAA FRG++S+KEV+++M Q KN+DY+VEWIPNNV+TAVC + P+G
Sbjct: 301 AAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAVCSVAPQG 360
Query: 360 LKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVIS 419
L M+ TFI N+T+IQ LFKR+ +QF++MF+RKAFLHWYT EGMDE+EFSE+ SN+ D++S
Sbjct: 361 LDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSEAESNMNDLVS 420
Query: 420 EYQQYQEATIDD 431
EYQQYQEAT++D
Sbjct: 421 EYQQYQEATVED 432
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 345 bits (886), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 165/443 (37%), Positives = 257/443 (58%), Gaps = 14/443 (3%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQL--ERIQVYYNQAAAGH 58
MRE + + VGQ G QIG+ WE+ EHGI +G D + + ++++ AG
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 HVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMD 118
HVPRAV VDLEP +D +++G Y ++F P+ + G+ A NN+A+GHYT G E++D+++D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDT 178
+R+ ++ C LQGF ++ +Y + FS+ P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238
VVEPYN+IL+ H +EH+D + +DNEA+YDIC R L + PTY++LN L+S +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKN 298
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 299 MMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPP 357
MV CDPRHGKY+ ++RG + K+V+ + + K + +V+W P K + PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 358 --------KGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSE 409
++ + + NTTAI + R+ +F M+ ++AF+HWY GEGM+E EFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 410 SGSNVTDVISEYQQYQEATIDDV 432
+ D+ + + Y+E +D V
Sbjct: 421 ARE---DMAALEKDYEEVGVDSV 440
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 345 bits (885), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 165/443 (37%), Positives = 257/443 (58%), Gaps = 14/443 (3%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQL--ERIQVYYNQAAAGH 58
MRE + + VGQ G QIG+ WE+ EHGI +G D + + ++++ AG
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 HVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMD 118
HVPRAV VDLEP +D +++G Y ++F P+ + G+ A NN+A+GHYT G E++D+++D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDT 178
+R+ ++ C LQGF ++ +Y + FS+ P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238
VVEPYN+IL+ H +EH+D + +DNEA+YDIC R L + PTY++LN L+S +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKN 298
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 299 MMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPP 357
MV CDPRHGKY+ ++RG + K+V+ + + K + +V+W P K + PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 358 --------KGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSE 409
++ + + NTTAI + R+ +F M+ ++AF+HWY GEGM+E EFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 410 SGSNVTDVISEYQQYQEATIDDV 432
+ D+ + + Y+E +D V
Sbjct: 421 ARE---DMAALEKDYEEVGVDSV 440
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 344 bits (882), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 167/453 (36%), Positives = 261/453 (57%), Gaps = 16/453 (3%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQL--ERIQVYYNQAAAGH 58
MRE + + VGQ G QIG+ WE+ EHGI +G D + + ++++ AG
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 HVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMD 118
HVPRAV VDLEP +D +++G Y ++F P+ + G+ A NN+A+GHYT G E++D+++D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDT 178
+R+ ++ C LQGF ++ +Y + FS+ P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238
VVEPYN+IL+ H +EH+D + +DNEA+YDIC R L + PTY++LN L+ +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKN 298
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 299 MMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPP 357
MV CDPRHGKY+ ++RG + K+V+ + + K + +V+W P K + PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 358 --------KGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSE 409
++ + + NTTAI + R+ +F M+ ++AF+HWY GEGM+E EFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 410 SGSNVTDVISEYQQYQEATIDDVVYDTEESDDE 442
+ D+ + + Y+E ID Y+ E+ +E
Sbjct: 421 ARE---DMAALEKDYEEVGIDS--YEDEDEGEE 448
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 343 bits (881), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 161/434 (37%), Positives = 254/434 (58%), Gaps = 11/434 (2%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQL--ERIQVYYNQAAAGH 58
MRE + + VGQ G QIG+ WE+ EHGI +G D + + ++++ AG
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 HVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMD 118
HVPRAV VDLEP +D +++G Y ++F P+ + G+ A NN+A+GHYT G E++D+++D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDT 178
+R+ ++ C LQGF ++ +Y + FS+ P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238
VVEPYN+IL+ H +EH+D + +DNEA+YDIC R L + PTY++LN L+S +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKN 298
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 299 MMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPP 357
MV CDPRHGKY+ ++RG + K+V+ + + K + +V+W P K + PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 358 --------KGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSE 409
++ + + NTTAI + R+ +F M+ ++AF+HWY GEGM+E EFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 410 SGSNVTDVISEYQQ 423
+ ++ + +Y++
Sbjct: 421 AREDMAALEKDYEE 434
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 343 bits (881), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 164/443 (37%), Positives = 255/443 (57%), Gaps = 14/443 (3%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQL--ERIQVYYNQAAAGH 58
MRE + + VGQ G QIG+ WE+ EHGI +G D + + ++++ AG
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 HVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMD 118
HVPRAV VDLEP +D +++G Y ++F P+ + G+ A NN+A+GHYT G E++D+++D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDT 178
+R+ ++ C LQGF ++ +Y + FS+ P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238
VVEPYN+IL+ H +EH+D + +DNEA+YDIC R L + PTY++LN L+ +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKN 298
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 299 MMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPP 357
MV CDPRHGKY+ ++RG + K+V+ + + K +V+W P K + PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPP 360
Query: 358 --------KGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSE 409
++ + + NTTAI + R+ +F M+ ++AF+HWY GEGM+E EFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 410 SGSNVTDVISEYQQYQEATIDDV 432
+ D+ + + Y+E +D V
Sbjct: 421 ARE---DMAALEKDYEEVGVDSV 440
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 343 bits (879), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 164/443 (37%), Positives = 255/443 (57%), Gaps = 14/443 (3%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQL--ERIQVYYNQAAAGH 58
MRE + + VGQ G QIG+ WE+ EHGI +G D + + ++++ AG
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 HVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMD 118
HVPRAV VDLEP +D +++G Y ++F P+ + G+ A NN+A+GHYT G E++D+++D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDT 178
+R+ ++ C LQGF ++ +Y + FS+ P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238
VVEPYN+IL+ H +EH+D + +DNEA+YDIC R L + PTY++LN L+ +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKN 298
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 299 MMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPP 357
MV CDPRHGKY+ ++RG + K+V+ + + K +V+W P K + PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 358 --------KGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSE 409
++ + + NTTAI + R+ +F M+ ++AF+HWY GEGM+E EFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 410 SGSNVTDVISEYQQYQEATIDDV 432
+ D+ + + Y+E +D V
Sbjct: 421 ARE---DMAALEKDYEEVGVDSV 440
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 343 bits (879), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 161/434 (37%), Positives = 253/434 (58%), Gaps = 11/434 (2%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQL--ERIQVYYNQAAAGH 58
MRE + + VGQ G QIG+ WE+ EHGI +G D + + ++++ AG
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 HVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMD 118
HVPRAV VDLEP +D +++G Y ++F P+ + G+ A NN+A+GHYT G E++D+++D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDT 178
VR+ ++ C LQGF ++ +Y + FS+ P+P+VS
Sbjct: 121 RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238
VVEPYN+IL+ H +EH+D + +DNEA+YDIC R L + PTY++LN L+S +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITA 240
Query: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKN 298
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 299 MMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPP 357
MV CDPRHGKY+ ++RG + K+V+ + + K +V+W P K + PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 358 --------KGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSE 409
++ + + NTTA+ + R+ +F M+ ++AF+HWY GEGM+E EFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 410 SGSNVTDVISEYQQ 423
+ ++ + +Y++
Sbjct: 421 AREDMAALEKDYEE 434
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 342 bits (878), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 164/443 (37%), Positives = 254/443 (57%), Gaps = 14/443 (3%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQL--ERIQVYYNQAAAGH 58
MRE + + VGQ G QIG+ WE+ EHGI +G D + + ++++ AG
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 HVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMD 118
HVPRAV VDLEP +D +++G Y ++F P+ + G+ A NN+A+GHYT G E++D+++D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDT 178
+R+ ++ C LQGF ++ +Y + FS+ P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238
VVEPYN+IL+ H +EH+D + +DNEA+YDIC R L + PTY++LN L+ +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKN 298
LRF G LN DL + N+VP+PR HF + +AP+ S + L+V E+T F+ N
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRAHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 299 MMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPP 357
MV CDPRHGKY+ ++RG + K+V+ + + K +V+W P K + PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPP 360
Query: 358 --------KGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSE 409
++ + + NTTAI + R+ +F M+ ++AF+HWY GEGM+E EFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 410 SGSNVTDVISEYQQYQEATIDDV 432
+ D+ + + Y+E +D V
Sbjct: 421 ARE---DMAALEKDYEEVGVDSV 440
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 342 bits (876), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 164/443 (37%), Positives = 254/443 (57%), Gaps = 14/443 (3%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQL--ERIQVYYNQAAAGH 58
MRE + + VGQ G QIG+ WE+ EHGI +G D + + ++++ AG
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 HVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMD 118
HVPRAV VDLEP +D +++G Y ++F P+ + G+ A NN+A+GHYT G E++D+++D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDT 178
+R+ ++ C LQGF ++ +Y + FS+ P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238
VVEPYN+IL+ H +EH+D + +DNEA+YDIC R L + PTY++LN L+ +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKN 298
LRF G LN DL + N+VP+PR HF + +AP+ S + L+V E+T F+ N
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 299 MMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPP 357
MV CDPRHGKY+ ++RG + K+V+ + + K +V+W P K + PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPP 360
Query: 358 --------KGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSE 409
++ + + NTTAI + R+ +F M+ ++AF+HWY GEGM+E EFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 410 SGSNVTDVISEYQQYQEATIDDV 432
+ D+ + + Y+E +D V
Sbjct: 421 ARE---DMAALEKDYEEVGVDSV 440
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 342 bits (876), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 164/443 (37%), Positives = 254/443 (57%), Gaps = 14/443 (3%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQL--ERIQVYYNQAAAGH 58
MRE + + VGQ G QIG+ WE+ EHGI +G D + + ++++ AG
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 HVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMD 118
HVPRAV VDLEP +D +++G Y ++F P+ + G+ A NN+A+GHYT G E++D+++D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDT 178
+R+ ++ C LQGF ++ +Y + FS+ P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238
VVEPYN+IL+ H +EH+D + +DNEA+YDIC R L + PTY++LN L+ +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKN 298
LRF G LN DL + N+VP+PR HF + +AP+ S + L+V E+T F+ N
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 299 MMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPP 357
MV CDPRHGKY+ ++RG + K+V+ + + K +V+W P K + PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPP 360
Query: 358 --------KGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSE 409
++ + + NTTAI + R+ +F M+ ++AF+HWY GEGM+E EFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 410 SGSNVTDVISEYQQYQEATIDDV 432
+ D+ + + Y+E +D V
Sbjct: 421 ARE---DMAALEKDYEEVGVDSV 440
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 342 bits (876), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 164/443 (37%), Positives = 254/443 (57%), Gaps = 14/443 (3%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQL--ERIQVYYNQAAAGH 58
MRE + + VGQ G QIG+ WE+ EHGI +G D + + ++++ AG
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 HVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMD 118
HVPRAV VDLEP +D +++G Y ++F P+ + G+ A NN+A+GHYT G E++D+++D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDT 178
+R+ ++ C LQGF ++ +Y + FS+ P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238
VVEPYN+IL+ H +EH+D + +DNEA+YDIC R L + PTY++LN L+ +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKN 298
LRF G LN DL + N+VP+PR HF + +AP+ S + L+V E+T F+ N
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 299 MMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPP 357
MV CDPRHGKY+ ++RG + K+V+ + + K +V+W P K + PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPP 360
Query: 358 --------KGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSE 409
++ + + NTTAI + R+ +F M+ ++AF+HWY GEGM+E EFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 410 SGSNVTDVISEYQQYQEATIDDV 432
+ D+ + + Y+E +D V
Sbjct: 421 ARE---DMAALEKDYEEVGVDSV 440
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 329 bits (844), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 162/435 (37%), Positives = 254/435 (58%), Gaps = 16/435 (3%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTY-NGDSDLQ--LERIQVYYNQAAAG 57
MRE++ + VGQ G QIG+ WE+ S EHGI +G +G S + E ++++ G
Sbjct: 1 MREVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYG 60
Query: 58 HHVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIM 117
VPRA+ VDLEP +D +++G Y +F P+ + G+ A NN+A+GHYT G E++ ++
Sbjct: 61 KFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDVL 120
Query: 118 DVVRRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSD 177
D +R+ ++ CD LQGF ++ EY + F+V P+P+VS
Sbjct: 121 DRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVST 180
Query: 178 TVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVT 237
+VVEPYN +L+ H +EH D T+ +DNEA+YD+C R L +P P++++LN+L++ +S VT
Sbjct: 181 SVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVT 240
Query: 238 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAK 297
LRF G LN DL + N+VP+PR+HF + ++P+ S++ + S +V E+T F+
Sbjct: 241 ASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVLSKSKAFHESNSVSEITNACFEPG 300
Query: 298 NMMVACDPRHGKYLTVAAIFRGQMSMKEVD---EQMVNAQKNADYYVEWIPNNVKTAVCD 354
N MV CDPR GKY+ ++RG + ++V EQ+ N K V+W P K +C
Sbjct: 301 NQMVKCDPRDGKYMATCLLYRGDVVTRDVQRAVEQVKN--KKTVQLVDWCPTGFKIGICY 358
Query: 355 IPPKGLKMSG--------TFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEME 406
PP S + NTT+I +KRI +F M+ ++AF+HWY GEGM+E E
Sbjct: 359 EPPTATPNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGE 418
Query: 407 FSESGSNVTDVISEY 421
F+E+ ++ + +Y
Sbjct: 419 FTEAREDLAALERDY 433
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 303 bits (777), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 153/425 (36%), Positives = 232/425 (54%), Gaps = 5/425 (1%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYN-GDSDLQLERIQVYYNQAAAGHH 59
+REI+ + VGQCGNQI FW + EHG+T GT G + ++V++++ G +
Sbjct: 1 VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKY 60
Query: 60 VPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDV 119
VPRAVLVDLEPG + I+ G ++F + V GA NNWA+G+ EG +++D IM+V
Sbjct: 61 VPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMNV 120
Query: 120 VRRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDTV 179
+ E LQGF ++R YP + + TFSVVPSP +SD+
Sbjct: 121 IDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDSA 180
Query: 180 VEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTC 239
VEPYNAIL++ +++++ D +DNEAL+ I L +P Y DLN++++ +S VT
Sbjct: 181 VEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIVSSVTAS 239
Query: 240 LRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNM 299
LRFPG+LN DL + N+VPFP HF FAP+ P+L ++ F N
Sbjct: 240 LRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARETFAQDNF 299
Query: 300 MVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQKNADYYVEWIP--NNVKTAVCDIPP 357
A D + G YL +A+FRG + K+VDE M +K+ + Y ++P +K + P
Sbjct: 300 TAAIDWQQGVYLAASALFRGDVKAKDVDENMATIRKSLN-YASYMPASGGLKLGYAETAP 358
Query: 358 KGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDV 417
+G SG + N T I +F+R+ QF MF A+ HWY G+ +++ + + +
Sbjct: 359 EGFASSGLALVNHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDMMAKARNQIATL 418
Query: 418 ISEYQ 422
Y+
Sbjct: 419 AQSYR 423
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 267 bits (682), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 151/453 (33%), Positives = 252/453 (55%), Gaps = 15/453 (3%)
Query: 2 REIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVP 61
REI+ LQ+GQCGNQIG +FW+ + EHGI+ + +R V++ QA H++P
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 62 RAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQ--SGAGNNWAKGHYTEGAELVDVIMDV 119
RAVL+DLEP + +I + Y K++ P+N + GAGNNWA G +++G ++ + I D+
Sbjct: 63 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 121
Query: 120 VRRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSP-KVSDT 178
+ RE++ D L+GF ++ D YP +++ T+SV P+ ++SD
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDV 181
Query: 179 VVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238
VV+PYN++L++ +L ++ D +DN AL I L + P++S +N LVS MS TT
Sbjct: 182 VVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 241
Query: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSI-QYRSLTVPELTQQMFDAK 297
LR+PG +N DL L +++P PRLHF M G+ PLT+ S+ R TV ++ +++ K
Sbjct: 242 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 301
Query: 298 NMMVACDPRHGK---YLTVAAIFRGQMSMKEVDE--QMVNAQKNADYYVEWIPNNVKTAV 352
N+MV+ Y+ + I +G++ +V + Q + +K A+ ++ W P +++ A+
Sbjct: 302 NVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLAN-FIPWGPASIQVAL 360
Query: 353 CDIP---PKGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSE 409
P ++SG + N T+I LF+R Q+ + +R+AFL + E M + F E
Sbjct: 361 SRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDE 420
Query: 410 SGSNVTDVISEYQQYQEATIDDVV-YDTEESDD 441
++ V +Y AT D + + T+E D
Sbjct: 421 MDTSREIVQQLIDEYHAATRPDYISWGTQEQVD 453
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/444 (33%), Positives = 247/444 (55%), Gaps = 14/444 (3%)
Query: 2 REIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVP 61
REI+ LQ+GQCGNQIG +FW+ + EHGI+ + +R V++ QA H++P
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 62 RAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQ--SGAGNNWAKGHYTEGAELVDVIMDV 119
RAVL+DLEP + +I + Y K++ P+N + GAGNNWA G +++G ++ + I D+
Sbjct: 63 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 121
Query: 120 VRRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSP-KVSDT 178
+ RE++ D L+GF ++ D YP +++ T+SV P+ ++SD
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDV 181
Query: 179 VVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238
VV+PYN++L++ +L ++ D +DN AL I L + P++S +N LVS MS TT
Sbjct: 182 VVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 241
Query: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSI-QYRSLTVPELTQQMFDAK 297
LR+PG +N DL L +++P PRLHF M G+ PLT+ S+ R TV ++ +++ K
Sbjct: 242 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 301
Query: 298 NMMVACDPRHGK---YLTVAAIFRGQMSMKEVDE--QMVNAQKNADYYVEWIPNNVKTAV 352
N+MV+ Y+ + I +G++ +V + Q + +K A+ ++ W P +++ A+
Sbjct: 302 NVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLAN-FIPWGPASIQVAL 360
Query: 353 CDIP---PKGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSE 409
P ++SG + N T+I LF+R Q+ + +R+AFL + E M + F E
Sbjct: 361 SRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDE 420
Query: 410 SGSNVTDVISEYQQYQEATIDDVV 433
++ V +Y AT D +
Sbjct: 421 MDTSREIVQQLIDEYHAATRPDYI 444
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 260 bits (665), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 136/437 (31%), Positives = 226/437 (51%), Gaps = 6/437 (1%)
Query: 5 VHLQVGQCGNQIGSKFWEVISEEHGI--TTNGTYNGDSDL-QLERIQVYYNQAAAGHHVP 61
+ + +GQ GNQI + FW+ + EHGI T T G + ++++G +VP
Sbjct: 7 IVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVP 66
Query: 62 RAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVR 121
RA++VDLEP +D +K+ G +F P N + GAG N+A G+ G E++ +M +
Sbjct: 67 RAIMVDLEPSVIDNVKATS-GSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSRLD 125
Query: 122 RESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDTVVE 181
E + CD + G ++++Y + + + +V+PSP+VS V E
Sbjct: 126 YEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVVTE 185
Query: 182 PYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLR 241
PYN + +++ L D DNEAL+D+ HR + +PT DLN L++ ++G+T +R
Sbjct: 186 PYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITASMR 245
Query: 242 FPGQLNAD--LRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNM 299
F G L + LR+L N+VP P LHF M FAPLT + ++ L + E+ + +FD ++
Sbjct: 246 FSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGSV 305
Query: 300 MVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQKNADYYVEWIPNNVKTAVCDIPPKG 359
AC P G++L+ A ++RG M K + + + A + WIP K + P
Sbjct: 306 FAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAMREKLPLTYWIPTAFKIGYVEQPGIS 365
Query: 360 LKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVIS 419
+ S + N T I + RI F +++RKAF +WY EGM E + + ++ +++
Sbjct: 366 HRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASAQELVQ 425
Query: 420 EYQQYQEATIDDVVYDT 436
YQ +E+ V D+
Sbjct: 426 SYQVAEESGAKAKVQDS 442
>pdb|1FSZ|A Chain A, Crystal Structure Of The Cell-Division Protein Ftsz At
2.8a Resolution
Length = 372
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 166 TFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDIC-HRTLKLPTPTYSD 224
T +VV P V + V NA+ + +L +HTD I NE L++I + LKL +
Sbjct: 154 TVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNMPLKLAFKVADE 213
Query: 225 LNHLVSATMSGVTTCLRFPGQLNAD 249
+ L++A + G+ + G +N D
Sbjct: 214 V--LINA-VKGLVELITKDGLINVD 235
>pdb|1W58|1 Chain 1, Ftsz Gmpcpp Soak I213 (M. Jannaschii)
pdb|1W59|A Chain A, Ftsz Dimer, Empty (M. Jannaschii)
pdb|1W59|B Chain B, Ftsz Dimer, Empty (M. Jannaschii)
pdb|1W5A|A Chain A, Ftsz Dimer, Mggtp Soak (M. Jannaschii)
pdb|1W5A|B Chain B, Ftsz Dimer, Mggtp Soak (M. Jannaschii)
pdb|1W5B|A Chain A, Ftsz Dimer, Gtp Soak (M. Jannaschii)
pdb|1W5B|B Chain B, Ftsz Dimer, Gtp Soak (M. Jannaschii)
pdb|2VAP|A Chain A, Ftsz Gdp M. Jannaschii
Length = 364
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 166 TFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDIC-HRTLKLPTPTYSD 224
T +VV P V + V NA+ + +L +HTD I NE L++I + LKL +
Sbjct: 154 TVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNMPLKLAFKVADE 213
Query: 225 LNHLVSATMSGVTTCLRFPGQLNAD 249
+ L++A + G+ + G +N D
Sbjct: 214 V--LINA-VKGLVELITKDGLINVD 235
>pdb|1W5E|A Chain A, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|B Chain B, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|C Chain C, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|D Chain D, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|E Chain E, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|F Chain F, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|G Chain G, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|H Chain H, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|I Chain I, Ftsz W319y Mutant, P1 (m. Jannaschii)
Length = 364
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 166 TFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDIC-HRTLKLPTPTYSD 224
T +VV P V + V NA+ + +L +HTD I NE L++I + LKL +
Sbjct: 154 TVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNMPLKLAFKVADE 213
Query: 225 LNHLVSATMSGVTTCLRFPGQLNAD 249
+ L++A + G+ + G +N D
Sbjct: 214 V--LINA-VKGLVELITKDGLINVD 235
>pdb|1LSH|A Chain A, Lipid-Protein Interactions In Lipovitellin
Length = 1056
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 173 PKVSDTVVEPYNAILSVHQL-IEHTDETYCIDNEALYDIC---------HRTLKLPTPTY 222
P+V+DT V IL++ QL ++ +T+ + + IC +RT ++
Sbjct: 101 PQVTDTAVNIVRGILNLFQLSLKKNQQTFELQETGVEGICQTTYVVQEGYRTNEMAVVKT 160
Query: 223 SDLN---HLVSATMSGVTTCLRFPG--QLNADLRKLAV 255
DLN H V TM G R P ++N +LR AV
Sbjct: 161 KDLNNCDHKVYKTM-GTAYAERCPTCQKMNKNLRSTAV 197
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 51 YNQAAAGHHVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTE 108
Y+Q + + + +A L +DA+ G IF YGQ+GAG W G E
Sbjct: 64 YDQTSCNYGIFQASFKPL----IDAVLEGFNSTIF-----AYGQTGAGKTWTMGGNKE 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,679,763
Number of Sequences: 62578
Number of extensions: 562350
Number of successful extensions: 1468
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1363
Number of HSP's gapped (non-prelim): 38
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)