Query psy17702
Match_columns 454
No_of_seqs 183 out of 1294
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 20:50:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 1E-134 2E-139 972.5 31.5 431 1-431 1-435 (443)
2 PLN00221 tubulin alpha chain; 100.0 6E-113 1E-117 884.3 32.7 430 1-430 1-441 (450)
3 PTZ00335 tubulin alpha chain; 100.0 9E-112 2E-116 875.1 32.8 428 1-428 1-439 (448)
4 PTZ00010 tubulin beta chain; P 100.0 2E-111 5E-116 873.2 32.6 428 1-428 1-429 (445)
5 PLN00220 tubulin beta chain; P 100.0 1E-110 3E-115 869.5 32.9 442 1-442 1-444 (447)
6 cd02188 gamma_tubulin Gamma-tu 100.0 2E-108 3E-113 847.4 30.0 419 2-421 1-431 (431)
7 PLN00222 tubulin gamma chain; 100.0 4E-108 9E-113 848.2 31.6 426 1-427 2-444 (454)
8 cd02187 beta_tubulin The tubul 100.0 1E-107 3E-112 841.9 32.3 423 2-424 1-424 (425)
9 cd02186 alpha_tubulin The tubu 100.0 1E-107 3E-112 843.8 30.5 423 2-424 1-434 (434)
10 PTZ00387 epsilon tubulin; Prov 100.0 7E-107 1E-111 839.6 32.6 418 1-428 1-453 (465)
11 KOG1374|consensus 100.0 9E-102 2E-106 745.6 26.9 425 1-426 2-441 (448)
12 cd02189 delta_tubulin The tubu 100.0 2E-99 4E-104 785.0 32.3 410 4-422 2-445 (446)
13 cd02190 epsilon_tubulin The tu 100.0 1.4E-99 3E-104 771.1 28.6 379 2-424 1-379 (379)
14 cd06059 Tubulin The tubulin su 100.0 3.6E-91 7.7E-96 713.6 29.0 380 3-423 1-382 (382)
15 KOG1376|consensus 100.0 9.9E-93 2.2E-97 681.1 15.7 403 1-418 1-406 (407)
16 KOG1375|consensus 100.0 6.3E-68 1.4E-72 512.3 15.4 347 41-427 5-352 (369)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 1.6E-65 3.4E-70 515.3 24.5 326 3-370 1-328 (328)
18 cd06060 misato Human Misato sh 100.0 1.6E-51 3.5E-56 426.7 28.7 404 2-422 1-492 (493)
19 PF00091 Tubulin: Tubulin/FtsZ 100.0 8.1E-52 1.8E-56 391.9 9.7 215 3-223 1-215 (216)
20 smart00864 Tubulin Tubulin/Fts 100.0 2.6E-37 5.6E-42 287.5 9.1 185 49-244 3-192 (192)
21 KOG2530|consensus 100.0 3E-33 6.5E-38 276.4 13.0 239 1-254 1-323 (483)
22 cd02202 FtsZ_type2 FtsZ is a G 100.0 8.2E-32 1.8E-36 271.3 14.9 221 1-270 1-233 (349)
23 cd02191 FtsZ FtsZ is a GTPase 100.0 7.9E-28 1.7E-32 238.0 14.0 204 4-257 3-206 (303)
24 TIGR00065 ftsZ cell division p 99.9 5.6E-26 1.2E-30 228.3 13.4 205 4-258 20-224 (349)
25 cd02201 FtsZ_type1 FtsZ is a G 99.9 2.4E-25 5.1E-30 221.2 13.1 207 4-259 3-209 (304)
26 PF03953 Tubulin_C: Tubulin C- 99.9 2.1E-24 4.6E-29 187.2 10.3 122 261-382 1-126 (126)
27 PRK13018 cell division protein 99.9 6.2E-24 1.4E-28 214.3 13.5 205 4-258 31-235 (378)
28 PF14881 Tubulin_3: Tubulin do 99.9 5E-22 1.1E-26 181.8 12.5 153 78-242 13-180 (180)
29 PRK09330 cell division protein 99.9 4.5E-22 9.7E-27 201.0 11.9 207 3-258 15-221 (384)
30 PF10644 Misat_Tub_SegII: Misa 99.5 2.2E-14 4.8E-19 122.1 4.2 67 2-74 1-71 (115)
31 COG0206 FtsZ Cell division GTP 99.3 6.3E-12 1.4E-16 124.9 11.5 151 96-260 70-220 (338)
32 smart00865 Tubulin_C Tubulin/F 98.5 8.4E-08 1.8E-12 81.6 3.5 113 246-381 1-119 (120)
33 PF13809 Tubulin_2: Tubulin li 97.6 0.0013 2.8E-08 66.8 14.0 103 91-193 99-218 (345)
34 PLN02847 triacylglycerol lipas 73.6 10 0.00022 41.1 7.2 63 102-168 223-287 (633)
35 PF06908 DUF1273: Protein of u 72.6 16 0.00036 33.4 7.5 108 113-238 28-135 (177)
36 PF03610 EIIA-man: PTS system 69.3 13 0.00029 31.1 5.8 32 113-144 40-71 (116)
37 PRK14484 phosphotransferase ma 69.1 4.9 0.00011 34.6 3.1 43 113-158 41-83 (124)
38 TIGR00824 EIIA-man PTS system, 64.3 22 0.00048 30.0 6.2 33 113-145 41-73 (116)
39 PF12953 DUF3842: Domain of un 62.5 7.7 0.00017 33.5 3.0 29 141-169 6-35 (131)
40 cd00006 PTS_IIA_man PTS_IIA, P 62.2 20 0.00042 30.4 5.5 32 113-144 40-71 (122)
41 PRK09461 ansA cytoplasmic aspa 49.9 54 0.0012 33.2 7.2 93 108-206 63-155 (335)
42 PRK13660 hypothetical protein; 46.4 95 0.0021 28.6 7.6 108 113-238 28-135 (182)
43 cd00741 Lipase Lipase. Lipase 43.2 39 0.00085 29.4 4.5 53 103-159 1-53 (153)
44 PF01764 Lipase_3: Lipase (cla 42.4 8.5 0.00018 32.9 0.1 57 101-161 34-91 (140)
45 TIGR02364 dha_pts dihydroxyace 38.2 29 0.00063 29.8 2.7 40 114-156 42-83 (125)
46 PF00710 Asparaginase: Asparag 37.9 1.1E+02 0.0023 30.7 7.2 91 108-205 54-145 (313)
47 cd00411 Asparaginase Asparagin 36.1 1.2E+02 0.0025 30.6 7.1 93 108-207 60-154 (323)
48 cd00519 Lipase_3 Lipase (class 34.2 46 0.00099 31.2 3.7 75 98-177 96-170 (229)
49 TIGR02153 gatD_arch glutamyl-t 33.2 1.4E+02 0.003 31.2 7.2 91 108-205 120-211 (404)
50 PRK15088 PTS system mannose-sp 32.5 1.1E+02 0.0025 30.7 6.3 34 113-146 42-75 (322)
51 PF12210 Hrs_helical: Hepatocy 30.4 38 0.00082 27.6 2.0 53 367-424 28-89 (96)
52 COG1528 Ftn Ferritin-like prot 29.8 28 0.0006 31.5 1.3 47 373-425 97-145 (167)
53 COG0031 CysK Cysteine synthase 28.6 36 0.00079 33.9 2.0 60 96-172 146-205 (300)
54 PF01713 Smr: Smr domain; Int 28.4 1.5E+02 0.0032 23.0 5.1 52 114-168 9-66 (83)
55 COG0572 Udk Uridine kinase [Nu 28.4 60 0.0013 30.8 3.3 27 135-162 9-35 (218)
56 COG0159 TrpA Tryptophan syntha 27.2 1.3E+02 0.0027 29.5 5.4 78 118-214 161-243 (265)
57 TIGR00519 asnASE_I L-asparagin 27.1 1.6E+02 0.0035 29.8 6.4 77 108-191 59-135 (336)
58 PF03283 PAE: Pectinacetyleste 26.6 91 0.002 32.0 4.5 52 105-161 132-183 (361)
59 PLN02408 phospholipase A1 26.1 1.4E+02 0.003 30.7 5.7 64 111-178 179-244 (365)
60 PLN02371 phosphoglucosamine mu 25.9 1.8E+02 0.0039 31.9 6.9 71 130-206 261-337 (583)
61 smart00870 Asparaginase Aspara 25.8 2.1E+02 0.0046 28.7 7.0 95 109-208 58-154 (323)
62 PTZ00489 glutamate 5-kinase; P 24.5 2.5E+02 0.0053 27.4 6.9 49 155-205 87-135 (264)
63 PF08259 Periviscerokin: Periv 24.2 32 0.00069 16.6 0.3 7 256-262 4-10 (11)
64 PF02879 PGM_PMM_II: Phosphogl 23.3 91 0.002 25.3 3.2 27 131-157 20-46 (104)
65 cd05801 PGM_like3 This bacteri 22.7 1.4E+02 0.0031 32.1 5.4 46 111-156 188-234 (522)
66 COG1109 {ManB} Phosphomannomut 22.4 3.9E+02 0.0084 28.2 8.5 90 112-206 158-250 (464)
67 PF09370 TIM-br_sig_trns: TIM- 22.3 48 0.001 32.4 1.5 33 115-155 2-34 (268)
68 PRK04183 glutamyl-tRNA(Gln) am 21.8 2.9E+02 0.0062 29.0 7.2 90 108-205 133-223 (419)
69 COG2893 ManX Phosphotransferas 21.4 1.4E+02 0.0031 26.3 4.1 54 99-153 29-82 (143)
70 PRK15414 phosphomannomutase Cp 21.2 6.2E+02 0.013 26.6 9.7 94 112-206 151-248 (456)
71 TIGR01732 tiny_TM_bacill conse 20.5 66 0.0014 19.7 1.3 13 140-152 1-13 (26)
72 PF02353 CMAS: Mycolic acid cy 20.3 1.5E+02 0.0033 29.0 4.6 64 99-169 29-93 (273)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=1e-134 Score=972.52 Aligned_cols=431 Identities=52% Similarity=0.995 Sum_probs=421.3
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCccccccccc
Q psy17702 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGH 80 (454)
Q Consensus 1 M~EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~ 80 (454)
|||||+||+||||||||++||+++|+||||.++|.+...++...++.++||+|+..||||||||+|||||+||+.+++++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~ 80 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP 80 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence 99999999999999999999999999999999999776666677899999999999999999999999999999999999
Q ss_pred CCccccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCC
Q psy17702 81 YGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYP 160 (454)
Q Consensus 81 ~~~~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp 160 (454)
|+.+|||++++.+++|||||||+|+|+.|+++.|.++|+|||++|.||+||||+++||+|||||||+|+.|+|+|+++||
T Consensus 81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp 160 (443)
T COG5023 81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP 160 (443)
T ss_pred cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCcccc
Q psy17702 161 DRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240 (454)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (454)
||.+.+|+|||.++.++++|||||++|+++.|.++||+++++||++|+++|.+.+++++|+|.++|++||++++++|+++
T Consensus 161 kK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtsl 240 (443)
T COG5023 161 KKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSL 240 (443)
T ss_pred hhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCchhhhhhhhcccccCcccccccccccccccccccccccCHhHHHHhhcccCccccccCCCCCceeeeeccccCC
Q psy17702 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRGQ 320 (454)
Q Consensus 241 r~~~~~n~~~~~l~~nLvP~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (454)
||||++|+|+.+|.+||||||++||+.++|+|+++..+..+++.|+.++++++|+|.|+|.+|+|+.|+|++++.++||+
T Consensus 241 RfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~ 320 (443)
T COG5023 241 RFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGD 320 (443)
T ss_pred ecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhc-ccccccccccCCCceeeeeCCCC---CCCcceEEEeccCccchHHHHhhHHHHhhhcccccchhh
Q psy17702 321 MSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPP---KGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHW 396 (454)
Q Consensus 321 ~~~~~~~~~~~~~~-~~~~~f~~w~p~~~~~~~~~~~~---~~~~~s~~~l~N~t~I~~~l~~l~~~~~~m~~krAflH~ 396 (454)
+.++++++++.+++ |++.+|++|+|+++++++|+++| .+.+.++|+|+|+|+|.+.|+++.++|++||+|||||||
T Consensus 321 v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhw 400 (443)
T COG5023 321 VDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHW 400 (443)
T ss_pred CCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHH
Confidence 99999999999999 99999999999999999999999 588899999999999999999999999999999999999
Q ss_pred cccCCCChhcHHHHHHHHHHHHHHHHHHhhccCCC
Q psy17702 397 YTGEGMDEMEFSESGSNVTDVISEYQQYQEATIDD 431 (454)
Q Consensus 397 Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~~ 431 (454)
|+++||||+||.||++++++|.++|++++.+..++
T Consensus 401 Y~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~ 435 (443)
T COG5023 401 YVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLD 435 (443)
T ss_pred HhhccCcccchhhHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999997776443
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=6.3e-113 Score=884.29 Aligned_cols=430 Identities=40% Similarity=0.819 Sum_probs=407.4
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcc--hhccccccccccCCCCCcccceEEecCCCCccccccc
Q psy17702 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSD--LQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKS 78 (454)
Q Consensus 1 M~EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~ 78 (454)
|||||+||+||||||||.+||+++|+||+++++|....... ...++.++||+|+.+++|+||||+||+||++|++++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999999987643221 2345678999999999999999999999999999999
Q ss_pred ccCCccccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhh
Q psy17702 79 GHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDE 158 (454)
Q Consensus 79 ~~~~~~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~de 158 (454)
++++++|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCcc
Q psy17702 159 YPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238 (454)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (454)
||++.+.+++|+|++..++++++|||++|++++|.+++|++++|||++|+++|.+.++++.|+|+++|++||++|+++|+
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence 99999999999999767899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCchhhhhhhhcccccCcccccccccccccccccccccccCHhHHHHhhcccCccccccCCCCCceeeeecccc
Q psy17702 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFR 318 (454)
Q Consensus 239 ~~r~~~~~n~~~~~l~~nLvP~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (454)
++||||.++.|++++++||||||++||++++++|+++.....+++++|.+|++++|++.++++.++|+.|+|||+++++|
T Consensus 241 s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~R 320 (450)
T PLN00221 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYR 320 (450)
T ss_pred cccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHc
Confidence 99999999999999999999999999999999999987777788899999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHhc-ccccccccccCCCceeeeeCCCCC--------CCcceEEEeccCccchHHHHhhHHHHhhhcc
Q psy17702 319 GQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPK--------GLKMSGTFIGNTTAIQGLFKRISEQFTSMFR 389 (454)
Q Consensus 319 G~~~~~~~~~~~~~~~-~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~I~~~l~~l~~~~~~m~~ 389 (454)
|++.++++.+.+.+++ ++...|++|+|+++++++|.++|. +.++++++++|+|+|..+|+++.++|++||+
T Consensus 321 G~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf~ 400 (450)
T PLN00221 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYA 400 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999998887 888999999999999999988764 3468999999999999999999999999999
Q ss_pred cccchhhcccCCCChhcHHHHHHHHHHHHHHHHHHhhccCC
Q psy17702 390 RKAFLHWYTGEGMDEMEFSESGSNVTDVISEYQQYQEATID 430 (454)
Q Consensus 390 krAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~ 430 (454)
||||||||+++||||+||.||+++|++|+++|+++.+...+
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~ 441 (450)
T PLN00221 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAE 441 (450)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999766533
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=9.5e-112 Score=875.06 Aligned_cols=428 Identities=40% Similarity=0.840 Sum_probs=406.0
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcc--hhccccccccccCCCCCcccceEEecCCCCccccccc
Q psy17702 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSD--LQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKS 78 (454)
Q Consensus 1 M~EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~ 78 (454)
|||||+||+||||||||.+||+++|+||+++++|....... ...++.++||+|+.+++|+||||+||+||++|++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999999987643221 2245678999999999999999999999999999999
Q ss_pred ccCCccccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhh
Q psy17702 79 GHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDE 158 (454)
Q Consensus 79 ~~~~~~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~de 158 (454)
++++.+|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCcc
Q psy17702 159 YPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238 (454)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (454)
||++++++++|+|+...++++++|||++|+|++|.+++|+++++||++|+++|.+.+++..++|+++|++||++|+++|+
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence 99999999999999767899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCchhhhhhhhcccccCcccccccccccccccccccccccCHhHHHHhhcccCccccccCCCCCceeeeecccc
Q psy17702 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFR 318 (454)
Q Consensus 239 ~~r~~~~~n~~~~~l~~nLvP~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (454)
++||||.++.|++++++||||||++||++++++|+++.....+++.+|.+|++++|++.+++..++|..|+||++++++|
T Consensus 241 ~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~R 320 (448)
T PTZ00335 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYR 320 (448)
T ss_pred ccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHc
Confidence 99999999999999999999999999999999999987777788999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHhc-ccccccccccCCCceeeeeCCCCC--------CCcceEEEeccCccchHHHHhhHHHHhhhcc
Q psy17702 319 GQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPK--------GLKMSGTFIGNTTAIQGLFKRISEQFTSMFR 389 (454)
Q Consensus 319 G~~~~~~~~~~~~~~~-~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~I~~~l~~l~~~~~~m~~ 389 (454)
|++.+.++.+.+.+++ ++...|++|+|+++++++|..+|. +..+++++++|+|+|..+|+++.++|++||+
T Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~ 400 (448)
T PTZ00335 321 GDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYA 400 (448)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999998887 788999999999999999988775 3578899999999999999999999999999
Q ss_pred cccchhhcccCCCChhcHHHHHHHHHHHHHHHHHHhhcc
Q psy17702 390 RKAFLHWYTGEGMDEMEFSESGSNVTDVISEYQQYQEAT 428 (454)
Q Consensus 390 krAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~ 428 (454)
||||||||+++||||+||.||+++|++|+++|+++..+.
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~ 439 (448)
T PTZ00335 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES 439 (448)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999996543
No 4
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=2.3e-111 Score=873.16 Aligned_cols=428 Identities=80% Similarity=1.333 Sum_probs=410.0
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCccccccccc
Q psy17702 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGH 80 (454)
Q Consensus 1 M~EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~ 80 (454)
|||||+||+||||||||.+||++++.||+++++|.+....+...++.++||+|+.+|+|+||||+||+||++|+.++.++
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 80 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGP 80 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccc
Confidence 99999999999999999999999999999998887644332233567899999999999999999999999999999888
Q ss_pred CCccccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCC
Q psy17702 81 YGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYP 160 (454)
Q Consensus 81 ~~~~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp 160 (454)
++.+|+|++++.+++|+|||||+|||..|+++.++++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||
T Consensus 81 ~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~ 160 (445)
T PTZ00010 81 YGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYP 160 (445)
T ss_pred hhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCcccc
Q psy17702 161 DRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240 (454)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (454)
|+.+.+++|||++..+++++++||++|++++|.+++|++++|||++|+++|.+.++++.|+|.++|++||++|+++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~~~ 240 (445)
T PTZ00010 161 DRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCL 240 (445)
T ss_pred ccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhccccccce
Confidence 99999999999977789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCchhhhhhhhcccccCcccccccccccccccccccccccCHhHHHHhhcccCccccccCCCCCceeeeeccccCC
Q psy17702 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRGQ 320 (454)
Q Consensus 241 r~~~~~n~~~~~l~~nLvP~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (454)
||||.+|.|+.++++||||||++||++++++|+++.....+++++|.+|++++|++++++.+++|.+|+|+|+++++||+
T Consensus 241 Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~RG~ 320 (445)
T PTZ00010 241 RFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGR 320 (445)
T ss_pred ecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHcCC
Confidence 99999999999999999999999999999999998777778899999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhc-ccccccccccCCCceeeeeCCCCCCCcceEEEeccCccchHHHHhhHHHHhhhcccccchhhccc
Q psy17702 321 MSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTG 399 (454)
Q Consensus 321 ~~~~~~~~~~~~~~-~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~I~~~l~~l~~~~~~m~~krAflH~Y~~ 399 (454)
+.++++.+.+..++ ++...|++|+|+++++++|.++|.+..+++++++|+|+|..+|+++.++|++||+||||||||++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~lsNstsi~~~~~~i~~~f~~m~~rrAflh~Y~~ 400 (445)
T PTZ00010 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSVTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTG 400 (445)
T ss_pred CCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcCccceEEEecCCcHHHHHHHHHHHHHHHHHhcCchhhhhhc
Confidence 99999999998887 78899999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCChhcHHHHHHHHHHHHHHHHHHhhcc
Q psy17702 400 EGMDEMEFSESGSNVTDVISEYQQYQEAT 428 (454)
Q Consensus 400 ~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~ 428 (454)
+||||+||.||+++|++|+++|+++.+..
T Consensus 401 eGmee~ef~EA~~~l~~li~~Y~~~~~~~ 429 (445)
T PTZ00010 401 EGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 (445)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999997665
No 5
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=1.3e-110 Score=869.51 Aligned_cols=442 Identities=77% Similarity=1.297 Sum_probs=416.9
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCccccccccc
Q psy17702 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGH 80 (454)
Q Consensus 1 M~EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~ 80 (454)
|||||+||+||||||||.+||+++++||+++++|.+....+...+.+++||+|..+++|+||||+||+||++|++++.++
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 80 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCc
Confidence 99999999999999999999999999999998887654333333567899999999999999999999999999999999
Q ss_pred CCccccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCC
Q psy17702 81 YGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYP 160 (454)
Q Consensus 81 ~~~~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp 160 (454)
++.+|+|++++++++|+|||||+|||..|+++.|.++|+||+++|+||++|||+++||+|||||||+|++|+|+|+|+||
T Consensus 81 ~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~ 160 (447)
T PLN00220 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (447)
T ss_pred cccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCcccc
Q psy17702 161 DRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240 (454)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (454)
++.+++++|+|++..+++++++||++|+|++|.+++|++++|||++|+++|.+.+++..++|+++|++||+.++++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~sl 240 (447)
T PLN00220 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (447)
T ss_pred ccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccchhh
Confidence 99999999999977799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCchhhhhhhhcccccCcccccccccccccccccccccccCHhHHHHhhcccCccccccCCCCCceeeeeccccCC
Q psy17702 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRGQ 320 (454)
Q Consensus 241 r~~~~~n~~~~~l~~nLvP~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (454)
||||.++.++.++++||||||++||+.++++|+.+.....+++++|.+++++++.+++++.++++.+|+|+++++++||+
T Consensus 241 RFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~RG~ 320 (447)
T PLN00220 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (447)
T ss_pred ccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHcCC
Confidence 99999999999999999999999999999999988766678889999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhc-ccccccccccCCCceeeeeCCCCCCCcceEEEeccCccchHHHHhhHHHHhhhcccccchhhccc
Q psy17702 321 MSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTG 399 (454)
Q Consensus 321 ~~~~~~~~~~~~~~-~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~I~~~l~~l~~~~~~m~~krAflH~Y~~ 399 (454)
+.++++.+.+.+++ ++.+.|++|+|+++++++|.++|.+..+++++|+|+|+|..+|+++.++|++||+||||||||++
T Consensus 321 ~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~rkAflh~Y~~ 400 (447)
T PLN00220 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400 (447)
T ss_pred CCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCcceeeEEecCchHHHHHHHHHHHHHHHHHhcCcchhhhcc
Confidence 99999999988887 77899999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCChhcHHHHHHHHHHHHHHHHHHhhccCCC-cccCCcCccch
Q psy17702 400 EGMDEMEFSESGSNVTDVISEYQQYQEATIDD-VVYDTEESDDE 442 (454)
Q Consensus 400 ~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~~-~~~~~~~~~~~ 442 (454)
+||||+||.||+++|++++++|+++.....+. ++|||+|+++|
T Consensus 401 ~Gmee~ef~ea~~~l~~li~~Y~~~~~~~~~~~~~~~~~~~~~~ 444 (447)
T PLN00220 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEEEEE 444 (447)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhccccccccccccccchh
Confidence 99999999999999999999999987654222 36777666655
No 6
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=1.5e-108 Score=847.38 Aligned_cols=419 Identities=40% Similarity=0.749 Sum_probs=397.0
Q ss_pred eeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCcccccccccC
Q psy17702 2 REIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHY 81 (454)
Q Consensus 2 ~EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~~ 81 (454)
||||+||+||||||||.+||+++|.||+++++|....+++...+..++||+|+.+++|+||||+||+||++|++++.+++
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~ 80 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEY 80 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCcc
Confidence 79999999999999999999999999999998876543333356778999999999999999999999999999999988
Q ss_pred CccccCCCcccccC--CCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhC
Q psy17702 82 GKIFRPDNFVYGQS--GAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEY 159 (454)
Q Consensus 82 ~~~~~~~~~i~~~~--~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~dey 159 (454)
+.+|+|++++.+++ |+||||++||+ .|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+|
T Consensus 81 ~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y 159 (431)
T cd02188 81 RNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRY 159 (431)
T ss_pred ccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHc
Confidence 89999999999987 99999999965 6999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEEeecCCCC-CCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCcc
Q psy17702 160 PDRIMNTFSVVPSPKV-SDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238 (454)
Q Consensus 160 p~~~i~~~~v~P~~~~-~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (454)
|++.+++++|+|++.. ++++++|||++|++++|.+++|++++|||++|.++|.+.++++.++|+++|++||++|+++|+
T Consensus 160 ~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~t~ 239 (431)
T cd02188 160 PKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTT 239 (431)
T ss_pred CcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCccc
Confidence 9999999999998753 488999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCchhhhhhhhcccccCcccccccccccccccc-cccccccCHhHHHHhhcccCccccccCC-CCCceeeeecc
Q psy17702 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRN-SIQYRSLTVPELTQQMFDAKNMMVACDP-RHGKYLTVAAI 316 (454)
Q Consensus 239 ~~r~~~~~n~~~~~l~~nLvP~p~~~fl~~s~~P~~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~-~~~~~ls~~~~ 316 (454)
++||||.+|+|+.++++||||||++||++++++|+++.. ...+++.+|.++++++|++.++|..+++ .+++|+|++++
T Consensus 240 ~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~~~ 319 (431)
T cd02188 240 TLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISILNI 319 (431)
T ss_pred ceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHHHH
Confidence 999999999999999999999999999999999999877 5778889999999999999999999999 89999999999
Q ss_pred ccCCCChHHHHHHHHHhc-ccccccccccCCCceeeeeCCCCC---CCcceEEEeccCccchHHHHhhHHHHhhhccccc
Q psy17702 317 FRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPK---GLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKA 392 (454)
Q Consensus 317 ~RG~~~~~~~~~~~~~~~-~~~~~f~~w~p~~~~~~~~~~~~~---~~~~s~~~l~N~t~I~~~l~~l~~~~~~m~~krA 392 (454)
+||++.++++.+.+.+++ +..+.|++|+|+++++++|.++|. +.++++++++|+|+|.++|+++.++|++||+|||
T Consensus 320 ~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~kf~~mf~krA 399 (431)
T cd02188 320 IQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTAHRVSGLMLANHTSIASLFERILKQFDKLRKRRA 399 (431)
T ss_pred HcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCCCceeEEEecCChHHHHHHHHHHHHHHHHHhhCc
Confidence 999999999999998888 666789999999999999988875 4578999999999999999999999999999999
Q ss_pred chhhcccCCCC---hhcHHHHHHHHHHHHHHH
Q psy17702 393 FLHWYTGEGMD---EMEFSESGSNVTDVISEY 421 (454)
Q Consensus 393 flH~Y~~~Gme---e~eF~Ea~~~l~~l~~~Y 421 (454)
|||||+++||| |+||.||+++|++|+++|
T Consensus 400 flH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 400 FLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred hhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 99999999999 999999999999999998
No 7
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=4.3e-108 Score=848.18 Aligned_cols=426 Identities=37% Similarity=0.684 Sum_probs=398.6
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCccccccccc
Q psy17702 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGH 80 (454)
Q Consensus 1 M~EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~ 80 (454)
|||||+||+||||||||.+||+++|+||+++++|.+..+.....+..++||+|+.+++|+||||+||+||++|++++.++
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 81 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSE 81 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCc
Confidence 69999999999999999999999999999998887644333334677899999999999999999999999999999888
Q ss_pred CCccccCCCcccccC--CCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhh
Q psy17702 81 YGKIFRPDNFVYGQS--GAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDE 158 (454)
Q Consensus 81 ~~~~~~~~~~i~~~~--~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~de 158 (454)
++.+|+|++++++++ |+||||++||+ .|+++.|+++|+||+++|.||++|||+++||+|||||||+|++|+|.|+|+
T Consensus 82 ~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~ 160 (454)
T PLN00222 82 YRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDR 160 (454)
T ss_pred cccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhh
Confidence 899999999999986 69999999965 799999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEeecCCC-CCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCc
Q psy17702 159 YPDRIMNTFSVVPSPK-VSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVT 237 (454)
Q Consensus 159 yp~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 237 (454)
||++.+++++|+|++. .++++++|||++|+|++|.+++|++++|||++|+++|.+.+++++|+|+++|++||++|+++|
T Consensus 161 y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~~T 240 (454)
T PLN00222 161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAST 240 (454)
T ss_pred cCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCCcc
Confidence 9999999999999863 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCchhhhhhhhcccccCcccccccccccccccc-cccccccCHhHHHHhhcccCccccccCCCC-----Ccee
Q psy17702 238 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRN-SIQYRSLTVPELTQQMFDAKNMMVACDPRH-----GKYL 311 (454)
Q Consensus 238 ~~~r~~~~~n~~~~~l~~nLvP~p~~~fl~~s~~P~~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~-----~~~l 311 (454)
+++||||.+|+|++++++||||||++||++++++|+.+.. ...++..++.++++++|++.++|..++|.. |+||
T Consensus 241 ~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k~l 320 (454)
T PLN00222 241 TTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYI 320 (454)
T ss_pred cccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccchH
Confidence 9999999999999999999999999999999999997642 345677899999999999999999898877 9999
Q ss_pred eeeccccCCCChHHHHHHHHHhc-ccccccccccCCCceeeeeCCCCC---CCcceEEEeccCccchHHHHhhHHHHhhh
Q psy17702 312 TVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPK---GLKMSGTFIGNTTAIQGLFKRISEQFTSM 387 (454)
Q Consensus 312 s~~~~~RG~~~~~~~~~~~~~~~-~~~~~f~~w~p~~~~~~~~~~~~~---~~~~s~~~l~N~t~I~~~l~~l~~~~~~m 387 (454)
|+++++||++.++++.+.+.+++ ++.+.|++|+|+++++++|.++|. +.+.++++|+|+|+|.++|+++.++|++|
T Consensus 321 a~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~~f~~m 400 (454)
T PLN00222 321 SILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLANHTSIRHLFSKCLSQYDKL 400 (454)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888 777999999999999999998884 46789999999999999999999999999
Q ss_pred cccccchhhcccCCCC----hhcHHHHHHHHHHHHHHHHHHhhc
Q psy17702 388 FRRKAFLHWYTGEGMD----EMEFSESGSNVTDVISEYQQYQEA 427 (454)
Q Consensus 388 ~~krAflH~Y~~~Gme----e~eF~Ea~~~l~~l~~~Y~~~~~~ 427 (454)
|+||||||||+++||+ ++||.||+++|++|+++|++++..
T Consensus 401 f~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~ 444 (454)
T PLN00222 401 RKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESP 444 (454)
T ss_pred HhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999993 899999999999999999988633
No 8
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=1.4e-107 Score=841.94 Aligned_cols=423 Identities=83% Similarity=1.375 Sum_probs=403.8
Q ss_pred eeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCcccccccccC
Q psy17702 2 REIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHY 81 (454)
Q Consensus 2 ~EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~~ 81 (454)
||||+||+||||||||.+||+++|+||+++++|.+....+...+..++||+|+.+++|+||||+||+||++|++++.+++
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~ 80 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPF 80 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCcc
Confidence 79999999999999999999999999999988866433322235678999999999999999999999999999998888
Q ss_pred CccccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCC
Q psy17702 82 GKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPD 161 (454)
Q Consensus 82 ~~~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~ 161 (454)
+.+|+|++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||+
T Consensus 81 ~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~ 160 (425)
T cd02187 81 GQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 160 (425)
T ss_pred cceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCccccc
Q psy17702 162 RIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLR 241 (454)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 241 (454)
+.+++++|+|+...++++++|||++|+|++|.+++|++++|||++|.++|.+.+++..++|+++|++||++|+++|+++|
T Consensus 161 ~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s~R 240 (425)
T cd02187 161 RIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240 (425)
T ss_pred cceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhccccccceeee
Confidence 99999999999766799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhhhhhhhcccccCcccccccccccccccccccccccCHhHHHHhhcccCccccccCCCCCceeeeeccccCCC
Q psy17702 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRGQM 321 (454)
Q Consensus 242 ~~~~~n~~~~~l~~nLvP~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~ 321 (454)
|||.+|.|+.++++||||||++||++++++|+++.....+++.++.+|++++|.+++++..++|..++|||+++++||++
T Consensus 241 fpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~ 320 (425)
T cd02187 241 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRGRV 320 (425)
T ss_pred cCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999987766788899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhc-ccccccccccCCCceeeeeCCCCCCCcceEEEeccCccchHHHHhhHHHHhhhcccccchhhcccC
Q psy17702 322 SMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGE 400 (454)
Q Consensus 322 ~~~~~~~~~~~~~-~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~I~~~l~~l~~~~~~m~~krAflH~Y~~~ 400 (454)
.++++.+.+.+++ +....|++|+|+++++.+|+++|.+.++++++++|+|+|.++|+++.++|++||+||||||||+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~kkAflh~Y~~~ 400 (425)
T cd02187 321 SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGE 400 (425)
T ss_pred CHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCCcceeEEEecCCcHHHHHHHHHHHHHHHHHhcCcchhhhhcc
Confidence 9999999998887 778999999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHHHHHH
Q psy17702 401 GMDEMEFSESGSNVTDVISEYQQY 424 (454)
Q Consensus 401 Gmee~eF~Ea~~~l~~l~~~Y~~~ 424 (454)
||||+||.||+++|++++++|+++
T Consensus 401 G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 401 GMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999976
No 9
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=1.2e-107 Score=843.76 Aligned_cols=423 Identities=40% Similarity=0.832 Sum_probs=401.7
Q ss_pred eeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcc--hhccccccccccCCCCCcccceEEecCCCCcccccccc
Q psy17702 2 REIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSD--LQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSG 79 (454)
Q Consensus 2 ~EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~ 79 (454)
||||+||+||||||||.+||+++++||+++++|.+..... ...+..++||+|+.+++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 7999999999999999999999999999999887643322 23457799999999999999999999999999999998
Q ss_pred cCCccccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhC
Q psy17702 80 HYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEY 159 (454)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~dey 159 (454)
+++.+|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCccc
Q psy17702 160 PDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTC 239 (454)
Q Consensus 160 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 239 (454)
|++++++++|+|+...+++++++||++|+|++|.+++|++++|||++|.++|.+.++++.++|+++|++||++|+++|++
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~ 240 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccc
Confidence 99999999999997667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCchhhhhhhhcccccCcccccccccccccccccccccccCHhHHHHhhcccCccccccCCCCCceeeeeccccC
Q psy17702 240 LRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRG 319 (454)
Q Consensus 240 ~r~~~~~n~~~~~l~~nLvP~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 319 (454)
+||||.++.|++++++||||||++||++++++|+++.....+++.+|.+|++++|++.++|..+++..++||++++++||
T Consensus 241 ~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG 320 (434)
T cd02186 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG 320 (434)
T ss_pred eecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcC
Confidence 99999999999999999999999999999999999877777888999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHhc-ccccccccccCCCceeeeeCCCCC--------CCcceEEEeccCccchHHHHhhHHHHhhhccc
Q psy17702 320 QMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPK--------GLKMSGTFIGNTTAIQGLFKRISEQFTSMFRR 390 (454)
Q Consensus 320 ~~~~~~~~~~~~~~~-~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~I~~~l~~l~~~~~~m~~k 390 (454)
++.++++.+.+.+++ ++...|++|+|+++++++|.++|. +.++++++++|+|+|.++|+++.++|++||+|
T Consensus 321 ~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~r 400 (434)
T cd02186 321 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSK 400 (434)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHHHHHHHHhh
Confidence 999999999988887 778999999999999999998775 34579999999999999999999999999999
Q ss_pred ccchhhcccCCCChhcHHHHHHHHHHHHHHHHHH
Q psy17702 391 KAFLHWYTGEGMDEMEFSESGSNVTDVISEYQQY 424 (454)
Q Consensus 391 rAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~ 424 (454)
|||||||+++||||+||.||+++|++|+++|+++
T Consensus 401 kAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~ 434 (434)
T cd02186 401 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 434 (434)
T ss_pred cchhhhhcCcCCchHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999863
No 10
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=6.9e-107 Score=839.60 Aligned_cols=418 Identities=36% Similarity=0.683 Sum_probs=394.2
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhC-CCCCCCCCCCcchhccccccccccCC-----CC--CcccceEEecCCCCc
Q psy17702 1 MREIVHLQVGQCGNQIGSKFWEVISEEHG-ITTNGTYNGDSDLQLERIQVYYNQAA-----AG--HHVPRAVLVDLEPGT 72 (454)
Q Consensus 1 M~EIitiq~Gq~GnqiG~~~w~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~F~e~~-----~~--~~~pRal~vD~e~~~ 72 (454)
|||||+|||||||||||.+||+++|+||+ ++++|.+ ++++++||++.. .+ +|+||||+||+||++
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~-------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~v 73 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY-------DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGV 73 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc-------cccccceecccccccccCCCccccCcccccCCCccH
Confidence 99999999999999999999999999999 7777654 245789998542 23 499999999999999
Q ss_pred ccccccccCCccccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHH
Q psy17702 73 MDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLI 152 (454)
Q Consensus 73 i~~i~~~~~~~~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~ 152 (454)
|++++.++++.+|+|++++++++|+||||++|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+
T Consensus 74 i~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ll 153 (465)
T PTZ00387 74 LNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRIL 153 (465)
T ss_pred HHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHH
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhCCCceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCC-------------
Q psy17702 153 SKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPT------------- 219 (454)
Q Consensus 153 e~L~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~------------- 219 (454)
|.|+|+||++.+++++|||+. .++++++|||++|+|++|.+++|+++++||++|.++|.+.++++.
T Consensus 154 e~l~d~y~~~~~~~~~V~P~~-~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~~~ 232 (465)
T PTZ00387 154 GMLEDEFPHVFRFCPVVFPSA-VDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQ 232 (465)
T ss_pred HHHHHhcccCceeeeEecCCC-CCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccccccccc
Confidence 999999999999999999985 688999999999999999999999999999999999988777663
Q ss_pred --------------CCccchhHHHHHHhhcCccccccCCCCchhhhhhhhcccccCcccccccccccccccccccccccC
Q psy17702 220 --------------PTYSDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLT 285 (454)
Q Consensus 220 --------------~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~~~~l~~nLvP~p~~~fl~~s~~P~~~~~~~~~~~~t 285 (454)
+.|+++|++||++|+++|+++||||.+|+|+.++++||||||++||++++++|+.+.....+.+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~~s 312 (465)
T PTZ00387 233 PHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGPRR 312 (465)
T ss_pred ccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhcccccCC
Confidence 889999999999999999999999999999999999999999999999999999887767778899
Q ss_pred HhHHHHhhcccCccccccCCCCCceeeeeccccCCCChHHHHHHHHHhcccccccccccCCCceeeeeCCCCCCCcceEE
Q psy17702 286 VPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQKNADYYVEWIPNNVKTAVCDIPPKGLKMSGT 365 (454)
Q Consensus 286 ~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~ 365 (454)
|.+|++++|++.++|..++|..++|||+++++||+..+.++.+.+.+++ +...|++|+|+++++++|.++|....++++
T Consensus 313 ~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk-~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~ 391 (465)
T PTZ00387 313 LDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLK-EQLNMIYWNEDGFKTGLCNVSPLGQPYSLL 391 (465)
T ss_pred HHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHh-ccccccccCCCceEEEeeccCCCCCceeEE
Confidence 9999999999999999999999999999999999998899998888875 448999999999999999999998999999
Q ss_pred EeccCccchHHHHhhHHHHhhhcccccchhhcccCCCChhcHHHHHHHHHHHHHHHHHHhhcc
Q psy17702 366 FIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVISEYQQYQEAT 428 (454)
Q Consensus 366 ~l~N~t~I~~~l~~l~~~~~~m~~krAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~ 428 (454)
+++|+|+|.++|+++.++|++||+||||||||+ +|||++||.||+++|++|+++|+++....
T Consensus 392 ~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~~~~ 453 (465)
T PTZ00387 392 CLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTAE 453 (465)
T ss_pred EecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999 79999999999999999999999997443
No 11
>KOG1374|consensus
Probab=100.00 E-value=8.7e-102 Score=745.60 Aligned_cols=425 Identities=39% Similarity=0.722 Sum_probs=399.4
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCccccccccc
Q psy17702 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGH 80 (454)
Q Consensus 1 M~EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~ 80 (454)
||||||||+||||||||.+||+++|.||+|.++|...+......++.++||++..++.|+||||+||+||+||+.+.+++
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~ 81 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSP 81 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccch
Confidence 68999999999999999999999999999999999776666667888999999999999999999999999999999999
Q ss_pred CCccccCCCcccc--cCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhh
Q psy17702 81 YGKIFRPDNFVYG--QSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDE 158 (454)
Q Consensus 81 ~~~~~~~~~~i~~--~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~de 158 (454)
++.+|+|+|+... .+|||||||.||. .|++..|+|+|.|+|++|.||+|.||+++||++||||||+||.|+|+|+|+
T Consensus 82 ~s~l~n~eni~~s~~ggGAGNNWA~GY~-~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~dr 160 (448)
T KOG1374|consen 82 YSGLYNPENIFLSDHGGGAGNNWASGYS-QGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDR 160 (448)
T ss_pred hhcccCccceEEecCCCCcccccccccc-cchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHh
Confidence 9999999999765 4679999999975 599999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEeecCC-CCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCc
Q psy17702 159 YPDRIMNTFSVVPSP-KVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVT 237 (454)
Q Consensus 159 yp~~~i~~~~v~P~~-~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 237 (454)
||||.+.+++|||.. ..++++|||||++|+|++|.+.+|+++++||.||.++|.+.+.+.+|+|+++|.+||..+++.|
T Consensus 161 ypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~st 240 (448)
T KOG1374|consen 161 YPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSAST 240 (448)
T ss_pred chhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999985 3689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCchhhhhhhhcccccCcccccccccccccccccccc--cccCHhHHHHhhcccCccccccCC---CCCceee
Q psy17702 238 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQY--RSLTVPELTQQMFDAKNMMVACDP---RHGKYLT 312 (454)
Q Consensus 238 ~~~r~~~~~n~~~~~l~~nLvP~p~~~fl~~s~~P~~~~~~~~~--~~~t~~~l~~~~~~~~~~~~~~~~---~~~~~ls 312 (454)
.++||||+++.++..+...|+|+|++|||++++.|+++...... +..++.+.+++++.|+++|.+..+ ....|++
T Consensus 241 ~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~~s 320 (448)
T KOG1374|consen 241 TTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCYIS 320 (448)
T ss_pred ccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcchHh
Confidence 99999999999999999999999999999999999998765444 778889999999999999988765 3447889
Q ss_pred eeccccCCCChHHHHHHHHHhc-ccccccccccCCCceeeeeCCCCC---CCcceEEEeccCccchHHHHhhHHHHhhhc
Q psy17702 313 VAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPK---GLKMSGTFIGNTTAIQGLFKRISEQFTSMF 388 (454)
Q Consensus 313 ~~~~~RG~~~~~~~~~~~~~~~-~~~~~f~~w~p~~~~~~~~~~~~~---~~~~s~~~l~N~t~I~~~l~~l~~~~~~m~ 388 (454)
...++-|.+.+..+..++.+++ ++...|.+|.|.++.+++.+..|+ .++.|..||+|+|+|...|++++.+||||+
T Consensus 321 i~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~~~vSglml~N~t~i~~lfe~~~~qydklr 400 (448)
T KOG1374|consen 321 ILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRAHRVSGLMLANSTSIVSLFERILGQYDKLR 400 (448)
T ss_pred HHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccccceeeeeeccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 778899999999999998877765 678999999999999999999999999999
Q ss_pred ccccchhhcccCCCChh---cHHHHHHHHHHHHHHHHHHhh
Q psy17702 389 RRKAFLHWYTGEGMDEM---EFSESGSNVTDVISEYQQYQE 426 (454)
Q Consensus 389 ~krAflH~Y~~~Gmee~---eF~Ea~~~l~~l~~~Y~~~~~ 426 (454)
+||||+|+|.++||+++ ||.|+++.+++++++|..+..
T Consensus 401 k~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~~ 441 (448)
T KOG1374|consen 401 KKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAEQ 441 (448)
T ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999998 999999999999999998844
No 12
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=2e-99 Score=784.99 Aligned_cols=410 Identities=26% Similarity=0.529 Sum_probs=378.7
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCcccccccccC--
Q psy17702 4 IVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHY-- 81 (454)
Q Consensus 4 Iitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~~-- 81 (454)
||+|||||||||||.+||+++++||+++++|.+. ...+..++||.|..+++|+||||+||+||++|++++.+..
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~----~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~ 77 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK----YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGG 77 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc----ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCc
Confidence 8999999999999999999999999998877643 2245678999999999999999999999999999998653
Q ss_pred CccccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCC
Q psy17702 82 GKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPD 161 (454)
Q Consensus 82 ~~~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~ 161 (454)
+++|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||+
T Consensus 78 ~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~ 157 (446)
T cd02189 78 TWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPE 157 (446)
T ss_pred ccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCccccc
Q psy17702 162 RIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLR 241 (454)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 241 (454)
+.+++++|+|+. .+++++|+||++|+|++|.+++|+++++||++|.++|.+.++++.++|+++|++||++|+++|++.|
T Consensus 158 ~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~~r 236 (446)
T cd02189 158 SLLLNIVVWPYT-TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQPSL 236 (446)
T ss_pred cceeeeeccCCC-CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhHhh
Confidence 999999999986 6899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c-C-------CCCchhhhhhhhcccccCcccccccccccccccccccccccCHhHHHHhhc---ccCccccc--------
Q psy17702 242 F-P-------GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMF---DAKNMMVA-------- 302 (454)
Q Consensus 242 ~-~-------~~~n~~~~~l~~nLvP~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~---~~~~~~~~-------- 302 (454)
+ + |.++.++.+++++|||||++||++++++|+++.....++..+|.+|+++++ .+.+.+..
T Consensus 237 ~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~~~ 316 (446)
T cd02189 237 DSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTVRP 316 (446)
T ss_pred ccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhcccccccccccccccc
Confidence 7 5 336899999999999999999999999999987777788999999999866 56666654
Q ss_pred -----------cCCCCCceeeeeccccCCCChHHHHHHHHHhcccccccccccCCCceeeeeCCCCC--CCcceEEEecc
Q psy17702 303 -----------CDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQKNADYYVEWIPNNVKTAVCDIPPK--GLKMSGTFIGN 369 (454)
Q Consensus 303 -----------~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--~~~~s~~~l~N 369 (454)
+++..++|+++++++||+..+.++... + ++...|++|+|+++++++|..+|. +..+++++++|
T Consensus 317 ~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~---~-~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~s~~~l~N 392 (446)
T cd02189 317 EGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERK---F-RDPLLYVNWSPSPVRFSISSHKRSFSKYEKSVTLVSN 392 (446)
T ss_pred ccccccccccccCCcccceeeeeeeeeCCCchHHHHHH---H-hccCcCCCcCCCCEeeeecCCCCCcCCcceeEEEEeC
Confidence 456789999999999999877766533 2 466889999999999999988775 47899999999
Q ss_pred CccchHHHHhhHHHHhhhcccccchhhcccCCCChhcHHHHHHHHHHHHHHHH
Q psy17702 370 TTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVISEYQ 422 (454)
Q Consensus 370 ~t~I~~~l~~l~~~~~~m~~krAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~ 422 (454)
+|+|..+|++++++|++||+||||||||+++||||+||.||++.|++++++|+
T Consensus 393 st~i~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 393 SQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred CchHHHHHHHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999996
No 13
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=1.4e-99 Score=771.12 Aligned_cols=379 Identities=37% Similarity=0.729 Sum_probs=364.8
Q ss_pred eeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCcccccccccC
Q psy17702 2 REIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHY 81 (454)
Q Consensus 2 ~EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~~ 81 (454)
||||+||+||||||||.+||++++.|| |+||+|+||+||++|++++.+++
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh------------------------------~~pR~v~iD~e~~~i~~i~~~~~ 50 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH------------------------------LKARAVLIDMEEGVVNEILKGPL 50 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh------------------------------cCCcceeccCChhHHHHHhcCcc
Confidence 799999999999999999999999988 67999999999999999999888
Q ss_pred CccccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCC
Q psy17702 82 GKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPD 161 (454)
Q Consensus 82 ~~~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~ 161 (454)
+.+|+|++++.+++|+||||++||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|+.|+|.|+|+||+
T Consensus 51 ~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~ 130 (379)
T cd02190 51 RDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPE 130 (379)
T ss_pred ccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCccccc
Q psy17702 162 RIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLR 241 (454)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 241 (454)
+.+++++|+|+.. ++++++|||++|+|++|.+++|+++++||++|. +|+++|++||++|+++|+++|
T Consensus 131 ~~~~~~~v~P~~~-~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~~r 197 (379)
T cd02190 131 VYRFVTSVYPSAD-DDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSSMR 197 (379)
T ss_pred cceEEEeecCCCC-CCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccceee
Confidence 9999999999974 888999999999999999999999999999997 699999999999999999999
Q ss_pred cCCCCchhhhhhhhcccccCcccccccccccccccccccccccCHhHHHHhhcccCccccccCCCCCceeeeeccccCCC
Q psy17702 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRGQM 321 (454)
Q Consensus 242 ~~~~~n~~~~~l~~nLvP~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~ 321 (454)
|||.+|.|++++.+||||||++||++++++|+++.....+++.++.+|+++++++.++|+.+++..++|+++++++||+.
T Consensus 198 f~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG~~ 277 (379)
T cd02190 198 FEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRGNV 277 (379)
T ss_pred cccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999987666778899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhcccccccccccCCCceeeeeCCCCCCCcceEEEeccCccchHHHHhhHHHHhhhcccccchhhcccCC
Q psy17702 322 SMKEVDEQMVNAQKNADYYVEWIPNNVKTAVCDIPPKGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEG 401 (454)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~I~~~l~~l~~~~~~m~~krAflH~Y~~~G 401 (454)
.+.++.+.+.+++. ...|++|+|+++++++|.++|...++++++++|+|+|..+|+++.++|++||+||||||||+++|
T Consensus 278 ~~~ei~~~~~~l~~-~~~fv~W~p~~~~~~~~~~~~~~~~~s~~~lsNsTsI~~~f~~i~~~f~~mf~krAflh~Y~~eG 356 (379)
T cd02190 278 SVSDLRRNIERLKP-KLKFVKWNQEGWKIGLCSVPPVGHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQVG 356 (379)
T ss_pred CHHHHHHHHHHHhc-cCcCcCcCCCcEEEeecccCCCCcceeEEEecCccHHHHHHHHHHHHHHHHHhcccchhhhhCCC
Confidence 99999888887762 37899999999999999999988899999999999999999999999999999999999999999
Q ss_pred CChhcHHHHHHHHHHHHHHHHHH
Q psy17702 402 MDEMEFSESGSNVTDVISEYQQY 424 (454)
Q Consensus 402 mee~eF~Ea~~~l~~l~~~Y~~~ 424 (454)
|||+||.||+++|++++++|+++
T Consensus 357 ~ee~ef~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 357 MEQGDFTEALESISNLIDEYDYL 379 (379)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999864
No 14
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=3.6e-91 Score=713.60 Aligned_cols=380 Identities=49% Similarity=0.953 Sum_probs=363.2
Q ss_pred eEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCcccccccccCC
Q psy17702 3 EIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHYG 82 (454)
Q Consensus 3 EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~~~ 82 (454)
|||+|||||||||||.+||+++ |+||+||++++.++.++.+
T Consensus 1 eii~i~vGq~G~qig~~~w~~~---------------------------------------i~iD~e~~~i~~i~~~~~~ 41 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL---------------------------------------ILVDLDPRVINEILQGQLS 41 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH---------------------------------------HcccCCcchhhhhhccccc
Confidence 8999999999999999999976 9999999999999998888
Q ss_pred ccccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCc
Q psy17702 83 KIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDR 162 (454)
Q Consensus 83 ~~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~ 162 (454)
.+|+|++++++++|+||||++||+..|+++.|+++|+||+++|+||.+|||+++||++||||||+|+.|+|.|+|+||++
T Consensus 42 ~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~ 121 (382)
T cd06059 42 KLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKI 121 (382)
T ss_pred ccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCcccccc
Q psy17702 163 IMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRF 242 (454)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 242 (454)
.+++++|+|+...+++++++||++|++++|.+++|++++++|++|.++|.+.+.+..++|+++|++||++|+++|.++|+
T Consensus 122 ~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r~ 201 (382)
T cd06059 122 LINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRF 201 (382)
T ss_pred ceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhccccccccc
Confidence 99999999997655689999999999999999999999999999999999988888999999999999999999999999
Q ss_pred CCCCchhhhhhhhcccccCcccccccccccccccccccccccCHhHHHHhhcccCccccccCCCCCceeeeeccccCCCC
Q psy17702 243 PGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRGQMS 322 (454)
Q Consensus 243 ~~~~n~~~~~l~~nLvP~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~ 322 (454)
||.+|.|+.+++++|||||++||++++++|+++.....++..++.+++++++.+.+++..++++.++|+++++++||+..
T Consensus 202 ~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~~ 281 (382)
T cd06059 202 PGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGDVF 281 (382)
T ss_pred CCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999876666788999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhc-ccccccccccCCCceeeeeCCCCC-CCcceEEEeccCccchHHHHhhHHHHhhhcccccchhhcccC
Q psy17702 323 MKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPK-GLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGE 400 (454)
Q Consensus 323 ~~~~~~~~~~~~-~~~~~f~~w~p~~~~~~~~~~~~~-~~~~s~~~l~N~t~I~~~l~~l~~~~~~m~~krAflH~Y~~~ 400 (454)
+.++.+.+.+++ +.... +|+|+++++++|+++|. ...+++++++|+|+|.++|+++.++|++||+||||||||+++
T Consensus 282 ~~~v~~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~~~~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~rAflh~Y~~~ 359 (382)
T cd06059 282 QSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPRAELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGE 359 (382)
T ss_pred HHHHHHHHHHHHHhcccc--cCCCCcEEEEecCCCCCcCcceeEEEecCchHHHHHHHHHHHHHHHHHhhCcchhhhcCc
Confidence 999988888776 43333 89999999999999998 889999999999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHHHHH
Q psy17702 401 GMDEMEFSESGSNVTDVISEYQQ 423 (454)
Q Consensus 401 Gmee~eF~Ea~~~l~~l~~~Y~~ 423 (454)
||||+||.||+++|++++++|++
T Consensus 360 G~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 360 GMDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred CCchHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999963
No 15
>KOG1376|consensus
Probab=100.00 E-value=9.9e-93 Score=681.10 Aligned_cols=403 Identities=41% Similarity=0.808 Sum_probs=381.5
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcc--hhccccccccccCCCCCcccceEEecCCCCccccccc
Q psy17702 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSD--LQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKS 78 (454)
Q Consensus 1 M~EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~ 78 (454)
|||||.||+||+|.|||+++|+++|.||+|+++|..+.+.+ ..++.+++||.++..++++||+++||+||. ||+++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 99999999999999999999999999999999998875433 334567899999999999999999999999 999999
Q ss_pred ccCCccccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhh
Q psy17702 79 GHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDE 158 (454)
Q Consensus 79 ~~~~~~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~de 158 (454)
+.|+.+|||+++++++++++||+|+|+|+.|+|+.|..+++||+.++.|..||||+++||+|||||||+++.++|.|..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCcc
Q psy17702 159 YPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238 (454)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (454)
|+||..+.+++||.+..+..+++|||++|+.+...+++|+.+++||++++.+|++++.+++|+|.++|++|+++++++|+
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsita 239 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCchhhhhhhhcccccCcccccccccccccccccccccccCHhHHHHhhcccCccccccCCCCCceeeeecccc
Q psy17702 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFR 318 (454)
Q Consensus 239 ~~r~~~~~n~~~~~l~~nLvP~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (454)
++||+|.+|.||.+|++|||||| + ++|+.+..+...++.++.+++.++|.+.++|++|||..|||+||++++|
T Consensus 240 Slrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyr 312 (407)
T KOG1376|consen 240 SLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 312 (407)
T ss_pred ccccCCcccccHHHHHhhCCCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhcc
Confidence 99999999999999999999999 2 8999999988899999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHhc-ccccccccccCCCceeeeeCCCCCCCcceEEEeccCccchHHHHhhHHHHhhhcccccchhhc
Q psy17702 319 GQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWY 397 (454)
Q Consensus 319 G~~~~~~~~~~~~~~~-~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~I~~~l~~l~~~~~~m~~krAflH~Y 397 (454)
|++.|+++..++..+| +.+.+|++-.-.+- .-.+..+.+|||+|+|+|.+.|.++.++|+.||.||||||||
T Consensus 313 gdvvP~~v~~A~a~ikt~rt~qfvd~~v~gg-------~lakv~Ravcmlsnttai~eawarld~kfdLmyakrafVhwy 385 (407)
T KOG1376|consen 313 GDVVPKDVNAAIATIKTKRTIQFVDTVVPGG-------DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 385 (407)
T ss_pred CCcCcccchHHHHhhhhccccccceeeccCc-------chhhhceeeEecCCCcHHHHHHhhcchhhhhhhcchheeeec
Confidence 9999999999999999 88899987221110 111467899999999999999999999999999999999999
Q ss_pred ccCCCChhcHHHHHHHHHHHH
Q psy17702 398 TGEGMDEMEFSESGSNVTDVI 418 (454)
Q Consensus 398 ~~~Gmee~eF~Ea~~~l~~l~ 418 (454)
+++||||+||.||+++|..|.
T Consensus 386 vgegmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 386 VGEGMEEGEFSEAREDLAALE 406 (407)
T ss_pred cCCCccccchhhhhhhHHhhc
Confidence 999999999999999998874
No 16
>KOG1375|consensus
Probab=100.00 E-value=6.3e-68 Score=512.30 Aligned_cols=347 Identities=85% Similarity=1.361 Sum_probs=330.1
Q ss_pred chhccccccccccCCCCCcccceEEecCCCCcccccccccCCccccCCCcccccCCCCCCccccccccchhhHHHHHHHH
Q psy17702 41 DLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVV 120 (454)
Q Consensus 41 ~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~~~~~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~i 120 (454)
..+..+++++|.+...++|+||+|+|||+|++++.++++++..+|+|++ +++| .|+|+.|.++.|.
T Consensus 5 ~~q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds----- 70 (369)
T KOG1375|consen 5 DLQLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS----- 70 (369)
T ss_pred cceeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc-----
Confidence 3456788999999999999999999999999999999999999999999 4433 8999999988776
Q ss_pred HHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeE
Q psy17702 121 RRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETY 200 (454)
Q Consensus 121 r~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i 200 (454)
.||++|||+++||++||||||.|++++..++++||.+.+.+++|+|+++ ++++++|||+.|++.+|.+++|.++
T Consensus 71 -----~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~ 144 (369)
T KOG1375|consen 71 -----SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETF 144 (369)
T ss_pred -----ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCccc
Confidence 8999999999999999999999999999999999999999999999986 9999999999999999999999999
Q ss_pred EecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCccccccCCCCchhhhhhhhcccccCccccccccccccccccccc
Q psy17702 201 CIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQ 280 (454)
Q Consensus 201 ~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~~~~l~~nLvP~p~~~fl~~s~~P~~~~~~~~ 280 (454)
++||++|+++|.+.+++..++ ++|.++||||++|.|+.++..|++|+|++||+.++++|++......
T Consensus 145 cidNeal~dic~~~lkl~~~~-------------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q 211 (369)
T KOG1375|consen 145 CIDNEALYDICFRTLKLKTPS-------------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQ 211 (369)
T ss_pred ccccHHHHHHHhhhhcccCCC-------------CceeecccccccchhhhhhhhccCCCcchhhccccccccccccccc
Confidence 999999999999999988777 8899999999999999999999999999999999999999999999
Q ss_pred ccccCHhHHHHhhcccCccccccCCCCCceeeeeccccCCCChHHHHHHHHHhc-ccccccccccCCCceeeeeCCCCCC
Q psy17702 281 YRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKG 359 (454)
Q Consensus 281 ~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~-~~~~~f~~w~p~~~~~~~~~~~~~~ 359 (454)
++..+++++++++|+.+|++..++ |++++.++|| ..+++++.+..++ |++..|++|+|+++|+.+|..+|..
T Consensus 212 ~~a~tv~eltqq~fdaknmm~a~d-----yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~g 284 (369)
T KOG1375|consen 212 YRALTVPELTQQMFDAKNMMTACD-----YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGG 284 (369)
T ss_pred cccccccccccccccCcchhhhhh-----hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCCcc
Confidence 999999999999999999999887 9999999999 7789999999888 9999999999999999999999999
Q ss_pred CcceEEEeccCccchHHHHhhHHHHhhhcccccchhhcccCCCChhcHHHHHHHHHHHHHHHHHHhhc
Q psy17702 360 LKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVISEYQQYQEA 427 (454)
Q Consensus 360 ~~~s~~~l~N~t~I~~~l~~l~~~~~~m~~krAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~ 427 (454)
.+.+.+.++|+|+|.+.|+++.++|..||+||||+|||.++||+|+||+||..++.+++.+|+++...
T Consensus 285 lkms~tf~~n~taiqelf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~~~ 352 (369)
T KOG1375|consen 285 LKMSSTFIGNNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQQD 352 (369)
T ss_pred ccccccccccchhHHHHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999433
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=1.6e-65 Score=515.30 Aligned_cols=326 Identities=48% Similarity=0.879 Sum_probs=304.3
Q ss_pred eEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCcccccccccCC
Q psy17702 3 EIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHYG 82 (454)
Q Consensus 3 EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~~~ 82 (454)
|||+||+||||||||++||+++ |+||+|+++++.++..+.+
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~---------------------------------------v~idtd~~~l~~~~~~~~~ 41 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL---------------------------------------VLVDTEPGVIDETLSGPYR 41 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh---------------------------------------heecCCHHHHHHHhCcccc
Confidence 8999999999999999999853 9999999999999988877
Q ss_pred ccccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCc
Q psy17702 83 KIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDR 162 (454)
Q Consensus 83 ~~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~ 162 (454)
.+|++.+.+++++|+||||++||+..|++..|+++|+||+++|+||++|||+++||+|||||||+|++++|.|+|+||++
T Consensus 42 ~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~ 121 (328)
T cd00286 42 LLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKR 121 (328)
T ss_pred cccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCcccccc
Q psy17702 163 IMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRF 242 (454)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 242 (454)
++++++|+|+...+ +++++||++|++++|.+++|+++++||++|.++|.+.+.+..++|+++|++||++|+++|.++||
T Consensus 122 ~~~~~~v~P~~~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 200 (328)
T cd00286 122 LKITFSILPGPDEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRF 200 (328)
T ss_pred ceeEEEecCCCCCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhcccccccccc
Confidence 99999999997433 69999999999999999999999999999999999888888899999999999999999999999
Q ss_pred CCCCchhhhhhhhcccccCcccccccccccccccccccccccCHhHHHHhhcccCccccccCCCCCceeeeeccccCCCC
Q psy17702 243 PGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRGQMS 322 (454)
Q Consensus 243 ~~~~n~~~~~l~~nLvP~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~ 322 (454)
||.+|.|++++.++|+|+|++||++++++|+.......+...++.+++++++.+.+++..+++..++++++++++||+..
T Consensus 201 ~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~~~ 280 (328)
T cd00286 201 DGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGPVS 280 (328)
T ss_pred CccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCCCC
Confidence 99999999999999999999999999999998766556677899999999999999998888889999999999999998
Q ss_pred hHHHHHHHHHhc-ccccccccccCCCceeeeeCCCCC-CCcceEEEeccC
Q psy17702 323 MKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPK-GLKMSGTFIGNT 370 (454)
Q Consensus 323 ~~~~~~~~~~~~-~~~~~f~~w~p~~~~~~~~~~~~~-~~~~s~~~l~N~ 370 (454)
.+++.+....++ +.... +|+|+++++++|..+|. ....++++++|+
T Consensus 281 ~~~v~~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~~l~Ns 328 (328)
T cd00286 281 PSEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPASEHKVSALLLSNS 328 (328)
T ss_pred hHHHHHHHHHHHHhCCcC--CcCCCCEeEeecCCCCCCCcCeEEEEeccC
Confidence 899988888776 44343 89999999999998887 778999999996
No 18
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=1.6e-51 Score=426.71 Aligned_cols=404 Identities=17% Similarity=0.221 Sum_probs=295.1
Q ss_pred eeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCC----CCCcccceEEecCCCCcccccc
Q psy17702 2 REIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAA----AGHHVPRAVLVDLEPGTMDAIK 77 (454)
Q Consensus 2 ~EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~----~~~~~pRal~vD~e~~~i~~i~ 77 (454)
|||||||+||++|+||+||||.|+..+.+.+++. ....+.+++||++. ..+|+||+|++|+++++...-+
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~------~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~ 74 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSP------ASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPE 74 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCCc------cccCCCceeeeccccCCCceeEcCcEEEEecCCccccccc
Confidence 7999999999999999999999998886665432 12346799999975 5689999999999998743221
Q ss_pred cc----------------cCCccccCCCccccc-----CCCCCCccccccc---cchhhHHHHHHHHHHHhhhcCCCCCc
Q psy17702 78 SG----------------HYGKIFRPDNFVYGQ-----SGAGNNWAKGHYT---EGAELVDVIMDVVRRESENCDCLQGF 133 (454)
Q Consensus 78 ~~----------------~~~~~~~~~~~i~~~-----~~~gnn~a~G~~~---~g~~~~d~~~d~ir~~~E~cd~lqgf 133 (454)
.+ -.+..|||+++...+ .+.+++|+.|+-. .+.+..|+++|+||+++|+||++|||
T Consensus 75 ~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGF 154 (493)
T cd06060 75 EGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGF 154 (493)
T ss_pred ccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccE
Confidence 11 125569999997663 3455677666532 45678899999999999999999999
Q ss_pred eEEeecCCCccccchHHHHHHhhhhCCCceeeEEEeecCCCC----CCccchhhHHHHHHHHHhhccceeEEecCh-hhH
Q psy17702 134 QLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKV----SDTVVEPYNAILSVHQLIEHTDETYCIDNE-ALY 208 (454)
Q Consensus 134 ~i~~s~~GGtGSG~~s~l~e~L~deyp~~~i~~~~v~P~~~~----~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~-~l~ 208 (454)
++++|++||| ||+|+.++|.|+|||||+.+++++++|.... .+.++++||++|++.+|.+++|+++|+.-. .++
T Consensus 155 qi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w 233 (493)
T cd06060 155 QVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLW 233 (493)
T ss_pred EEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Confidence 9999999999 8999999999999999999999999997532 257899999999999999999999999844 222
Q ss_pred hhh-----hccCCCCCCCccchhHHHHHHhhcCccccccCCCCchhhhhhhhcccccCcccccccccc-ccccccccccc
Q psy17702 209 DIC-----HRTLKLPTPTYSDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFA-PLTSRNSIQYR 282 (454)
Q Consensus 209 ~~~-----~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~~~~l~~nLvP~p~~~fl~~s~~-P~~~~~~~~~~ 282 (454)
... ...+.++..+..+..+++|.+|.++|.++|.++.. .+|.+|+.+|.+..| |++.++.+ |+....
T Consensus 234 ~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~gR-ki~~~~~a~P~p~~~----- 306 (493)
T cd06060 234 RKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSGR-KVVAAGLALPFPMVG----- 306 (493)
T ss_pred cCCCCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhccc-hhhhhccCCCCCCCC-----
Confidence 221 12234455667789999999999999999998765 578999999998766 88777665 554322
Q ss_pred ccCHhHHHHhhcc--cCccccccC-CCCCceeeeeccccCCCChHH-------------------HHHHHHHh-c---cc
Q psy17702 283 SLTVPELTQQMFD--AKNMMVACD-PRHGKYLTVAAIFRGQMSMKE-------------------VDEQMVNA-Q---KN 336 (454)
Q Consensus 283 ~~t~~~l~~~~~~--~~~~~~~~~-~~~~~~ls~~~~~RG~~~~~~-------------------~~~~~~~~-~---~~ 336 (454)
.-++.++..++-. +..++ .++ +....++++.++.||....+- +.+.+... + +.
T Consensus 307 ~~~l~d~L~~~~~~~~~~~l-~p~~~~~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~~~ 385 (493)
T cd06060 307 GQDLIDFLDQSDGAVPWLQL-TPGCQIGTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQYPG 385 (493)
T ss_pred CCcHHHHHHhcCCCCCcccc-CCCCccCceeeeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhccCC
Confidence 2344555444321 11222 221 234578999999999752111 11111111 0 11
Q ss_pred ccccccccCCCcee------eee----CC------CC-------CCCcceEEEeccCccchHHHHhhHHHHhhhcccccc
Q psy17702 337 ADYYVEWIPNNVKT------AVC----DI------PP-------KGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAF 393 (454)
Q Consensus 337 ~~~f~~w~p~~~~~------~~~----~~------~~-------~~~~~s~~~l~N~t~I~~~l~~l~~~~~~m~~krAf 393 (454)
+.....-++.|+++ .+. .. ++ ...-+.++.|.|++++.++|+.++.++.|+-.+|
T Consensus 386 s~~~~~~~~~p~~~~~PfP~if~~~v~~~G~~~~~~~~~~~~~~V~s~p~~a~l~ss~~l~~~l~~l~~~~~kl~~~r-- 463 (493)
T cd06060 386 SMSALSVLPLPLKIRVPFPYIFNPNISADGFVLDNSSRGSAGADVESIPVLAALQSSPSLGEMLESLHRQLSKLDLRR-- 463 (493)
T ss_pred cchhheecCCCCCCCCCCchhhccccCCCccccCCCcccccccceeechhhhhhcCchHHHHHHHHHHHHHHhhhhHh--
Confidence 11111111222221 111 00 00 0112456789999999999999999999999999
Q ss_pred hhhcccCCCChhcHHHHHHHHHHHHHHHH
Q psy17702 394 LHWYTGEGMDEMEFSESGSNVTDVISEYQ 422 (454)
Q Consensus 394 lH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~ 422 (454)
+|.|.+.|+|+|||+|+.+.|.+++++|+
T Consensus 464 ~~~~~~~g~e~de~~e~le~L~~~~~~Y~ 492 (493)
T cd06060 464 KASFFESGLEEDEYKELLEQLLDLAECYE 492 (493)
T ss_pred hhcccccccCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999996
No 19
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=8.1e-52 Score=391.95 Aligned_cols=215 Identities=44% Similarity=0.891 Sum_probs=201.2
Q ss_pred eEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCcccccccccCC
Q psy17702 3 EIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHYG 82 (454)
Q Consensus 3 EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~~~ 82 (454)
|||+|||||||||||.+||++++.||+++++. .......+.++||++...++|+||+|+||+|++++++++..+.+
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~----~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~ 76 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDS----KSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKR 76 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTS----SSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEET
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhcccccc----ccccccccccceeeeccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999998871 12334566789999999999999999999999999999988877
Q ss_pred ccccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCc
Q psy17702 83 KIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDR 162 (454)
Q Consensus 83 ~~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~ 162 (454)
.+|+|++++.+++|+||||+.||+..|+++.+.++|+||+++|+||.++||+++||+|||||||+++.|++.|+++||++
T Consensus 77 ~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~ 156 (216)
T PF00091_consen 77 SLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKK 156 (216)
T ss_dssp TESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTS
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCcc
Q psy17702 163 IMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYS 223 (454)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~ 223 (454)
++++++|+|+. .++++++||++++|++|.+++|++++|||++|.++|.+.+++++|+|+
T Consensus 157 ~~~~~~ilP~~--~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~ 215 (216)
T PF00091_consen 157 PIISFSILPFS--SEGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFN 215 (216)
T ss_dssp EEEEEEEE-CG--GGSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHH
T ss_pred ceeeccccccc--cccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcC
Confidence 99999999994 389999999999999999999999999999999999999998888775
No 20
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=2.6e-37 Score=287.48 Aligned_cols=185 Identities=38% Similarity=0.671 Sum_probs=171.9
Q ss_pred cccccCCCCCcccceEEecCCCCcccccccccCCccccCCCcccccCCCCCCccccccc-----cchhhHHHHHHHHHHH
Q psy17702 49 VYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYT-----EGAELVDVIMDVVRRE 123 (454)
Q Consensus 49 ~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~~~~~~~~~~~i~~~~~~gnn~a~G~~~-----~g~~~~d~~~d~ir~~ 123 (454)
.+|.++ ++.||+|++|+|+++++.+..++.+..|+|.+.+..+.++||||++||+. .|+++.++++|+||++
T Consensus 3 ~~~g~g---~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~ 79 (192)
T smart00864 3 KVFGVG---GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREE 79 (192)
T ss_pred EEEEeC---CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 456554 78999999999999999988777777899999999999999999999998 8999999999999999
Q ss_pred hhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEec
Q psy17702 124 SENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCID 203 (454)
Q Consensus 124 ~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~ 203 (454)
+|+| ++|+++||+|||||||+++.+++.++ +||+.. ++++|+|. ..+.++++||+++++++|.+++|+++++|
T Consensus 80 le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~d 152 (192)
T smart00864 80 LEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVID 152 (192)
T ss_pred hcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 9999 89999999999999999999999999 999877 99999995 47889999999999999999999999999
Q ss_pred ChhhHhhhhccCCCCCCCccchhHHHHHHhhcCccccccCC
Q psy17702 204 NEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFPG 244 (454)
Q Consensus 204 N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~ 244 (454)
|++|.++|.+.+.+ .++|+++|++||+.|+++|.++||||
T Consensus 153 N~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 153 NDALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred hHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999877766 68999999999999999999999986
No 21
>KOG2530|consensus
Probab=100.00 E-value=3e-33 Score=276.42 Aligned_cols=239 Identities=25% Similarity=0.352 Sum_probs=183.4
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCC----CCcccceEEecCCCCcccc-
Q psy17702 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAA----GHHVPRAVLVDLEPGTMDA- 75 (454)
Q Consensus 1 M~EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~----~~~~pRal~vD~e~~~i~~- 75 (454)
||||+|||+|+.+|++|+||||+|..-+++.++...+.... ..+ |++|+.+.+ .+|+||+|++|+++.+...
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~~~~--~~n-dvlyr~g~~~~~~~tytPRl~l~Dl~g~~g~~~ 77 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPPGEL--CPN-DVLYRTGRTDHGQITYTPRLLLVDLKGELGTLK 77 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCChhhc--Ccc-hhhhhccccccCceeeccceeEEecCccccccc
Confidence 99999999999999999999999999888877644332111 112 899998854 5899999999999887210
Q ss_pred -----------------------cccc-------------------------------------------cCCccccCCC
Q psy17702 76 -----------------------IKSG-------------------------------------------HYGKIFRPDN 89 (454)
Q Consensus 76 -----------------------i~~~-------------------------------------------~~~~~~~~~~ 89 (454)
++.. -.+..|||++
T Consensus 78 ~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yHp~t 157 (483)
T KOG2530|consen 78 YQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYHPRT 157 (483)
T ss_pred cchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcCccc
Confidence 0000 0155689998
Q ss_pred cccccC-----CCCCCccccccccc-hhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCce
Q psy17702 90 FVYGQS-----GAGNNWAKGHYTEG-AELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRI 163 (454)
Q Consensus 90 ~i~~~~-----~~gnn~a~G~~~~g-~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~ 163 (454)
+...+. ++-++|..|+-..- ..+.+++-|+||.++|+||.+|||+++.++.+|+| |+++.++|.|+|||+++.
T Consensus 158 l~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~~~ 236 (483)
T KOG2530|consen 158 LNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSKKA 236 (483)
T ss_pred cccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhcCCc
Confidence 865543 33366666654322 23678899999999999999999999999999997 999999999999999999
Q ss_pred eeEEEeecCCC-CCCccch------hhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcC
Q psy17702 164 MNTFSVVPSPK-VSDTVVE------PYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGV 236 (454)
Q Consensus 164 i~~~~v~P~~~-~~~~~~~------~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~ 236 (454)
+++++..|.+. .++.... ..|.++++.+|.++|++++|+.--. .++ ......+++|.++.++
T Consensus 237 v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~-------~~~----~~~~tsA~~a~~~ds~ 305 (483)
T KOG2530|consen 237 VFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTAS-------GLG----DLWETSAKLARAFDSI 305 (483)
T ss_pred eeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeecccccc-------ccc----cHHHHHHHHHhhcccc
Confidence 99999998543 2333322 4689999999999999999987221 111 3457889999999999
Q ss_pred ccccccCCCCchhhhhhh
Q psy17702 237 TTCLRFPGQLNADLRKLA 254 (454)
Q Consensus 237 t~~~r~~~~~n~~~~~l~ 254 (454)
|.|.|..++.+..+.+.+
T Consensus 306 tlptr~~ssS~~~~~d~l 323 (483)
T KOG2530|consen 306 TLPTRLISSSNLRQRDTL 323 (483)
T ss_pred cccceecchhHHHHHHHH
Confidence 999999988665555543
No 22
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.97 E-value=8.2e-32 Score=271.34 Aligned_cols=221 Identities=21% Similarity=0.299 Sum_probs=189.2
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCccccccccc
Q psy17702 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGH 80 (454)
Q Consensus 1 M~EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~ 80 (454)
|+ |..|.+|+||+.|-+++++.- .. .+.+|+||+|+||+++..++.++.
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~~-----~~-----------------------~~~~~~~~~iavntD~~~L~~l~~-- 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRHD-----KR-----------------------SGFGYCVGALAINTAKNDLKGLKH-- 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHhC-----CC-----------------------cCCccceeEEEEECCHHHHHhhhc--
Confidence 55 788999999999999987621 00 113688999999999998887755
Q ss_pred CCccccCCCcccccC-----CCCCCccccccccchhhHHHHHHHHHHHhhhcCC--CCCceEEeecCCCccccchHHHHH
Q psy17702 81 YGKIFRPDNFVYGQS-----GAGNNWAKGHYTEGAELVDVIMDVVRRESENCDC--LQGFQLTHSIGGGTGSGMGTLLIS 153 (454)
Q Consensus 81 ~~~~~~~~~~i~~~~-----~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~--lqgf~i~~s~~GGtGSG~~s~l~e 153 (454)
.+.|+.++.+++ |+|+||. .|+++.++.+|.||+++|.|+. +|+|++++|+|||||||+++.+++
T Consensus 50 ---~~~~~ki~~g~~~t~G~GaG~~~~-----~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae 121 (349)
T cd02202 50 ---IPAEDRILIGQSEVKGHGVGADRE-----LGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAK 121 (349)
T ss_pred ---CCCCCEEEecCcccCCCCCCCChH-----HHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHH
Confidence 245777777764 5667764 5689999999999999999997 999999999999999999999999
Q ss_pred HhhhhCCCceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHh
Q psy17702 154 KIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATM 233 (454)
Q Consensus 154 ~L~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i 233 (454)
.++++|| +++++++++|+. .+..+++||+++++++|.+++|.+++|||++|++++.. + .+.|+.+|++||+.|
T Consensus 122 ~lke~~~-~~~~~iv~~P~~--~eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~---~-~~~f~~~N~~Ia~~i 194 (349)
T cd02202 122 ELKERYE-EPVYALGVLPAR--EEGERYSANAARSLDALSEEADAIILFDNDAWKRKGES---V-EEAYDRINEEIARRI 194 (349)
T ss_pred HHHHhCC-ccEEEEEEecCC--CCCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc---h-HHHHHHHHHHHHHHH
Confidence 9999999 889999999996 45699999999999999999999999999999998642 2 378999999999999
Q ss_pred hcCcccccc-----CCCCchhhhhhhhcccccCccccccccc
Q psy17702 234 SGVTTCLRF-----PGQLNADLRKLAVNMVPFPRLHFFMPGF 270 (454)
Q Consensus 234 ~~~t~~~r~-----~~~~n~~~~~l~~nLvP~p~~~fl~~s~ 270 (454)
+.++.++|| ||.+|.|+.++.++|.+. .+.+.++
T Consensus 195 ~~l~~~~r~~~~~~~g~invD~~dv~~~L~~~---G~~~iG~ 233 (349)
T cd02202 195 GLLLRAGEANAGDSVGESVLDASEVINTLSGG---GFATIGY 233 (349)
T ss_pred HHHHHhhhcccCCCCCeEeccHHHHHHHhccC---CeEEEEE
Confidence 999999999 999999999999999765 4444444
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.95 E-value=7.9e-28 Score=237.99 Aligned_cols=204 Identities=22% Similarity=0.319 Sum_probs=168.7
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCcccccccccCCc
Q psy17702 4 IVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHYGK 83 (454)
Q Consensus 4 Iitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~~~~ 83 (454)
|..|.+|+||+.+-+++++. ++ .-.+.+.||++....+.+.. +.+-
T Consensus 3 i~viGvGg~G~n~v~~~~~~-----~~----------------------------~~~~~iainTd~~~L~~~~a-~~ki 48 (303)
T cd02191 3 IAVIGFGGAGGNIVDKFLEY-----DK----------------------------EGRSAVAVNTDAQDLLGLEA-ENRV 48 (303)
T ss_pred EEEEEECchHHHHHHHHHHc-----CC----------------------------CCccEEEEECcHHHHhcCCC-CcEE
Confidence 77899999999999988751 00 01467899998876665542 1222
Q ss_pred cccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCce
Q psy17702 84 IFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRI 163 (454)
Q Consensus 84 ~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~ 163 (454)
++.++ .+...|+|+||..| ++..++++|+||+.+|.||. |+|++++|||||||+++.+++.+++.|+
T Consensus 49 ~iG~~--~t~g~GaG~~~~~G-----~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~--- 115 (303)
T cd02191 49 LIGQA--RTKGLGAGANPELG-----AEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT--- 115 (303)
T ss_pred ecCCc--cccCCCCCCCHHHH-----HHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC---
Confidence 22222 13456899998765 68899999999999999994 9999999999999999999999999985
Q ss_pred eeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCccccccC
Q psy17702 164 MNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFP 243 (454)
Q Consensus 164 i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~ 243 (454)
.+++|+|.|...|..+++||+++++++|.+++|++++|||++|.++|.+ +.+. ..|+.+|++||+.++++|.++|+|
T Consensus 116 -~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~-~af~~~N~~ia~~i~~it~~i~~~ 192 (303)
T cd02191 116 -LTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLE-GAFDHADEVLVRAVGGLFGAIEIE 192 (303)
T ss_pred -CEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CChH-HHHHHHHHHHHHHHHHHHHhhccC
Confidence 4555555555578899999999999999999999999999999999986 6664 599999999999999999999999
Q ss_pred CCCchhhhhhhhcc
Q psy17702 244 GQLNADLRKLAVNM 257 (454)
Q Consensus 244 ~~~n~~~~~l~~nL 257 (454)
|.+|.|+.++.+.|
T Consensus 193 g~invD~~dv~~~l 206 (303)
T cd02191 193 GEINVDFADVKNVM 206 (303)
T ss_pred CcccCCHHHHHHHh
Confidence 99999999998776
No 24
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.93 E-value=5.6e-26 Score=228.29 Aligned_cols=205 Identities=19% Similarity=0.287 Sum_probs=162.2
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCcccccccccCCc
Q psy17702 4 IVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHYGK 83 (454)
Q Consensus 4 Iitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~~~~ 83 (454)
|..|.+|+||+.+-+.+++.- + .-...+.+|++....+.+.. +.+-
T Consensus 20 i~viGvGg~G~n~v~~l~~~~-----~----------------------------~~~~~iainTD~~~L~~~~a-~~ki 65 (349)
T TIGR00065 20 IKVIGVGGGGNNTVNRMLEEG-----V----------------------------EGVEFIAINTDAQHLKTTKA-DKKI 65 (349)
T ss_pred EEEEEeCCcHHHHHHHHHHcC-----C----------------------------CceEEEEEECCHHHHhcCCC-CeEE
Confidence 778999999999998887620 0 01456888887765544432 1122
Q ss_pred cccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCce
Q psy17702 84 IFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRI 163 (454)
Q Consensus 84 ~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~ 163 (454)
++.++ .+...|+|+||+. |+++.++.+|.||+.+|.||. ++|++|+|||||||+++.+++.++ +|+ +.
T Consensus 66 ~iG~~--~t~G~GaG~~~~~-----G~~~aee~~d~Ir~~le~~D~---vfI~aglGGGTGSG~apvia~~ak-e~~-~l 133 (349)
T TIGR00065 66 LIGKK--LTRGLGAGGNPEI-----GRKAAEESRDEIRKLLEGADM---VFITAGMGGGTGTGAAPVVAKIAK-ELG-AL 133 (349)
T ss_pred EcCCC--CCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHhCCCE---EEEEEeccCccchhHHHHHHHHHH-HcC-CC
Confidence 22222 1333589999875 589999999999999999998 499999999999999986666655 564 34
Q ss_pred eeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCccccccC
Q psy17702 164 MNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFP 243 (454)
Q Consensus 164 i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~ 243 (454)
.+++.++|+ ..+..+++||+++++++|.+++|++++|||++|.++|.+ +.+. ..|+.+|.+|++.+.++|.++|+|
T Consensus 134 ~vaivt~Pf--~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~-~af~~~N~iia~~i~~it~~ir~~ 209 (349)
T TIGR00065 134 TVAVVTKPF--KFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLN-DAFKVADDVLVRAVKGISELITKP 209 (349)
T ss_pred EEEEEeCCc--cccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHH-HHHHHHHHHHHHHHHhHHHhhccC
Confidence 444444554 478899999999999999999999999999999999987 7764 499999999999999999999999
Q ss_pred CCCchhhhhhhhccc
Q psy17702 244 GQLNADLRKLAVNMV 258 (454)
Q Consensus 244 ~~~n~~~~~l~~nLv 258 (454)
|.+|.|+.++.+-|-
T Consensus 210 g~iNvDf~dv~~vl~ 224 (349)
T TIGR00065 210 GLINIDFADVRAVMS 224 (349)
T ss_pred CcCcCCHHHHHHHHh
Confidence 999999999987653
No 25
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.92 E-value=2.4e-25 Score=221.24 Aligned_cols=207 Identities=17% Similarity=0.268 Sum_probs=166.5
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCcccccccccCCc
Q psy17702 4 IVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHYGK 83 (454)
Q Consensus 4 Iitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~~~~ 83 (454)
|..|.+|+||+.+-+.+++.= + . -...+.+|++....+.+.. +.+-
T Consensus 3 i~viGvGg~G~n~v~~l~~~~-----~-------------------------~---~~~~~a~ntD~~~L~~~~~-~~k~ 48 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIESG-----L-------------------------E---GVEFIAANTDAQALAKSKA-PNKI 48 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHcC-----C-------------------------C---CceEEEEECCHHHHhcCCC-CcEE
Confidence 678999999999998887610 0 0 0457888988776655443 2232
Q ss_pred cccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCce
Q psy17702 84 IFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRI 163 (454)
Q Consensus 84 ~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~ 163 (454)
++.++ .+.-.|+|+||+.| ++..++.+|+||+.+|.||. ++|++|+|||||||+++.+++..+ +|+. .
T Consensus 49 ~ig~~--~t~g~Gag~~~~~g-----~~~a~~~~~~I~~~l~~~d~---v~i~aglGGGTGSG~ap~ia~~a~-e~g~-~ 116 (304)
T cd02201 49 QLGKE--LTRGLGAGGDPEVG-----RKAAEESREEIKEALEGADM---VFITAGMGGGTGTGAAPVIAKIAK-EMGA-L 116 (304)
T ss_pred EcCCC--CCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHhCCCE---EEEeeccCCCcchhHHHHHHHHHH-HcCC-C
Confidence 33332 23456899998866 57789999999999999998 599999999999999999776655 5653 4
Q ss_pred eeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCccccccC
Q psy17702 164 MNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFP 243 (454)
Q Consensus 164 i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~ 243 (454)
.+++.++|+ ..+..+++||++++++.|.+++|+++++||++|.++|.+.+.+.. .|+.+|++|++.++++|.++|+|
T Consensus 117 ~~~vvt~Pf--~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~~~ 193 (304)
T cd02201 117 TVAVVTKPF--SFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLITKP 193 (304)
T ss_pred EEEEEeCCc--cccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhccC
Confidence 555555555 467789999999999999999999999999999999987777765 89999999999999999999999
Q ss_pred CCCchhhhhhhhcccc
Q psy17702 244 GQLNADLRKLAVNMVP 259 (454)
Q Consensus 244 ~~~n~~~~~l~~nLvP 259 (454)
|.+|.|+.++.+.|-.
T Consensus 194 g~invD~~dv~~vl~~ 209 (304)
T cd02201 194 GLINLDFADVKTVMKN 209 (304)
T ss_pred ccccCCHHHHHHHhcc
Confidence 9999999999888754
No 26
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.91 E-value=2.1e-24 Score=187.18 Aligned_cols=122 Identities=47% Similarity=0.914 Sum_probs=110.5
Q ss_pred CcccccccccccccccccccccccCHhHHHHhhcccCccccccCCCCCceeeeeccccCCCChHHHHHHHHHhc-ccccc
Q psy17702 261 PRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADY 339 (454)
Q Consensus 261 p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~-~~~~~ 339 (454)
|++||++++++|+.......+++.++.+|++++|+++++|.+++|.+|+|||+++++||++.++++.+.+.+++ +..++
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 89999999999999988888899999999999999999999999999999999999999999999999999998 77789
Q ss_pred cccccCCCceeeeeCCCCCCCcce---EEEeccCccchHHHHhhHH
Q psy17702 340 YVEWIPNNVKTAVCDIPPKGLKMS---GTFIGNTTAIQGLFKRISE 382 (454)
Q Consensus 340 f~~w~p~~~~~~~~~~~~~~~~~s---~~~l~N~t~I~~~l~~l~~ 382 (454)
|++|+|+++|+++|+++|.....+ +++|+|+|+|.++|+++.+
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s~~s~~~LsNsTaI~~~f~~i~~ 126 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNSDRSGLMLSNSTAIAEVFSRISH 126 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTSSEEEEEEEEEGGGHHHHHHHHH
T ss_pred eeeecCchhhcccccCCCcccCCCcceEEEeCChHHHHHHHHHhcC
Confidence 999999999999999998866655 9999999999999999874
No 27
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.91 E-value=6.2e-24 Score=214.30 Aligned_cols=205 Identities=21% Similarity=0.355 Sum_probs=165.8
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCcccccccccCCc
Q psy17702 4 IVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHYGK 83 (454)
Q Consensus 4 Iitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~~~~ 83 (454)
|..|.||+||+.+-+++++. ++ .+ ...+.|+++....+.+... .+-
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~-------------------------~~---v~~iaiNTD~q~L~~~~a~-~ki 76 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GI-------------------------EG---AETIAINTDAQHLAMIKAD-KKI 76 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC-------------------------CC---ceEEEEECCHHHHhcCCCC-cEE
Confidence 77899999999999888751 00 00 3568888887655443322 122
Q ss_pred cccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCce
Q psy17702 84 IFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRI 163 (454)
Q Consensus 84 ~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~ 163 (454)
++.++ ++...|+|++|..| ++..++.+|.||+.+|.||. |+|++|+|||||||+++.|++.+++ ++ ..
T Consensus 77 ~iG~~--~t~G~GaG~dp~~G-----~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g-~l 144 (378)
T PRK13018 77 LIGKS--LTRGLGAGGDPEVG-----RKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG-AL 144 (378)
T ss_pred ecCCc--cCCCCCCCCChHHH-----HHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC-CC
Confidence 22221 23345788997765 56788889999999999997 9999999999999999999999987 54 45
Q ss_pred eeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCccccccC
Q psy17702 164 MNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFP 243 (454)
Q Consensus 164 i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~ 243 (454)
.+++++.|+. .+...+..|+.+++.+|.+++|++++|||++|.++| +.+.+. ..|+.+|.+|++.+.++|.++|+|
T Consensus 145 tv~vVt~Pf~--~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~-~af~~~N~iIa~~I~~It~~i~~~ 220 (378)
T PRK13018 145 VVGVVTKPFK--FEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIA-DAFSVADEVIAETVKGITETITKP 220 (378)
T ss_pred eEEEEEcCcc--cccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHH-HHHHHHHHHHHHHHHhhhhhcccC
Confidence 6778888885 677889999999999999999999999999999999 666665 489999999999999999999999
Q ss_pred CCCchhhhhhhhccc
Q psy17702 244 GQLNADLRKLAVNMV 258 (454)
Q Consensus 244 ~~~n~~~~~l~~nLv 258 (454)
|.+|.|+.++.+-|-
T Consensus 221 G~iN~Df~dv~~vl~ 235 (378)
T PRK13018 221 SLINLDFADVKSVMK 235 (378)
T ss_pred CceecCHHHHHHHhc
Confidence 999999999987663
No 28
>PF14881 Tubulin_3: Tubulin domain
Probab=99.87 E-value=5e-22 Score=181.83 Aligned_cols=153 Identities=20% Similarity=0.308 Sum_probs=115.3
Q ss_pred cccCCccccCCCcccccCCCC-------CCccccccccch-hhHHHHHHH-HHHHhhhcCCCCCceEEeecCCCccccch
Q psy17702 78 SGHYGKIFRPDNFVYGQSGAG-------NNWAKGHYTEGA-ELVDVIMDV-VRRESENCDCLQGFQLTHSIGGGTGSGMG 148 (454)
Q Consensus 78 ~~~~~~~~~~~~~i~~~~~~g-------nn~a~G~~~~g~-~~~d~~~d~-ir~~~E~cd~lqgf~i~~s~~GGtGSG~~ 148 (454)
++-.+.+|||++++..++..- .+|..|.-.... +..+++.|+ ||+++|+||.+||||++.++.+|+| |++
T Consensus 13 SDy~r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfa 91 (180)
T PF14881_consen 13 SDYNRVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFA 91 (180)
T ss_pred CCCCcceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHH
Confidence 333567799999987765432 344444422222 223456665 9999999999999999999999997 999
Q ss_pred HHHHHHhhhhCCCcee-eEEEeecCCCCCC-----ccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCc
Q psy17702 149 TLLISKIRDEYPDRIM-NTFSVVPSPKVSD-----TVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTY 222 (454)
Q Consensus 149 s~l~e~L~deyp~~~i-~~~~v~P~~~~~~-----~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~ 222 (454)
+.++|+|+|||||+.+ +.+++.+...... ...+..|.++++.+|.++|++++|+.... +..+.
T Consensus 92 s~~Le~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~-----------d~~s~ 160 (180)
T PF14881_consen 92 SSLLEHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS-----------DASSN 160 (180)
T ss_pred HHHHHHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC-----------cCCCc
Confidence 9999999999999996 6666554432111 12356899999999999999999998311 23466
Q ss_pred cchhHHHHHHhhcCcccccc
Q psy17702 223 SDLNHLVSATMSGVTTCLRF 242 (454)
Q Consensus 223 ~~~N~~ia~~i~~~t~~~r~ 242 (454)
.+..+++|.+|.++|.|+|.
T Consensus 161 ~htSai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 161 WHTSAILAAAIDTITLPYRL 180 (180)
T ss_pred HHHHHHHHHHHHhccccCCC
Confidence 79999999999999999884
No 29
>PRK09330 cell division protein FtsZ; Validated
Probab=99.87 E-value=4.5e-22 Score=201.01 Aligned_cols=207 Identities=21% Similarity=0.299 Sum_probs=164.1
Q ss_pred eEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCcccccccccCC
Q psy17702 3 EIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHYG 82 (454)
Q Consensus 3 EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~~~ 82 (454)
.|..|.||+||+.+-+++++.- +. . ...+.+++|....+.+... .+
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~~-----~~----------------~------------v~fia~NTD~q~L~~~~a~-~k 60 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEEG-----IQ----------------G------------VEFIAANTDAQALLKSKAP-VK 60 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHcC-----CC----------------C------------ceEEEEeCcHHHHhcCCCC-eE
Confidence 3778999999999998887521 00 0 2457788876654433321 12
Q ss_pred ccccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCc
Q psy17702 83 KIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDR 162 (454)
Q Consensus 83 ~~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~ 162 (454)
-++.++ ++...|+|+||. .|++..++.+|.||+.+|.||.+ +|++++|||||||.++ ++..++.+|+
T Consensus 61 i~lG~~--~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaap-vIA~iake~g-- 127 (384)
T PRK09330 61 IQLGEK--LTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAP-VVAEIAKELG-- 127 (384)
T ss_pred EEcCCc--ccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHH-HHHHHHHHcC--
Confidence 222221 233458888877 55788999999999999999886 9999999999999999 5556666775
Q ss_pred eeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCcccccc
Q psy17702 163 IMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRF 242 (454)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 242 (454)
+++++|+|.|...|..+++||+.++|+.|.+++|.+|+++|++|.+++.+.+.+.. .|+.+|.+|++.+.+++..+++
T Consensus 128 -~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~-Af~~ad~vL~~~v~~It~~i~~ 205 (384)
T PRK09330 128 -ILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLD-AFKAADDVLRQAVQGITDLITK 205 (384)
T ss_pred -CcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 56777777666689999999999999999999999999999999999987676653 8999999999999999999999
Q ss_pred CCCCchhhhhhhhccc
Q psy17702 243 PGQLNADLRKLAVNMV 258 (454)
Q Consensus 243 ~~~~n~~~~~l~~nLv 258 (454)
||.+|.|+.++.+-|-
T Consensus 206 pG~iNvDfaDvk~vm~ 221 (384)
T PRK09330 206 PGLINLDFADVKTVMS 221 (384)
T ss_pred CCcccCCHHHHHHHHh
Confidence 9999999999877664
No 30
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.48 E-value=2.2e-14 Score=122.10 Aligned_cols=67 Identities=25% Similarity=0.437 Sum_probs=52.0
Q ss_pred eeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCC----CCCcccceEEecCCCCccc
Q psy17702 2 REIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAA----AGHHVPRAVLVDLEPGTMD 74 (454)
Q Consensus 2 ~EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~----~~~~~pRal~vD~e~~~i~ 74 (454)
|||||||+|+.+|+||+||||+|..-+..+++ ......+++++||++. ..+|+||+|++|+++++-.
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~------~~~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~lGs 71 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQESYLPYDPD------EKPSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGLGS 71 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhhhcccccCcc------ccCcccCCceEEecccCcCCCeeECCcEEEEecCCCcCc
Confidence 79999999999999999999999665532221 1112336799999974 3689999999999998743
No 31
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.34 E-value=6.3e-12 Score=124.94 Aligned_cols=151 Identities=19% Similarity=0.303 Sum_probs=127.5
Q ss_pred CCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCceeeEEEeecCCCC
Q psy17702 96 GAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKV 175 (454)
Q Consensus 96 ~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~i~~~~v~P~~~~ 175 (454)
|+|.| ...|++..++..+.|++.++..| -++++.++|||||+|.++.+++.+++ | ....++++++|+.
T Consensus 70 GaGa~-----P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake-~-g~ltvavvt~Pf~-- 137 (338)
T COG0206 70 GAGAN-----PEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE-L-GALTVAVVTLPFS-- 137 (338)
T ss_pred CCCCC-----cHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh-c-CCcEEEEEEecch--
Confidence 55655 56678888888888888877655 68999999999999999999999998 3 6778888999986
Q ss_pred CCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCccccccCCCCchhhhhhhh
Q psy17702 176 SDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFPGQLNADLRKLAV 255 (454)
Q Consensus 176 ~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~~~~l~~ 255 (454)
.|.....-|+.-++..|.+++|.+|+++|+.|.+... ...+ ...|...|.++++.+.+++..+.-||..|.|+.++.+
T Consensus 138 ~EG~~r~~~A~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~-~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~ 215 (338)
T COG0206 138 FEGSPRMENAEEGIEELREVVDTLIVIPNDKLLKGKD-KTPI-AEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRT 215 (338)
T ss_pred hcCchHHHHHHHHHHHHHHhCCcEEEEecHHHHhccC-cccH-HHHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHH
Confidence 5667778899999999999999999999999988765 2222 2468888999999999999999999999999999988
Q ss_pred ccccc
Q psy17702 256 NMVPF 260 (454)
Q Consensus 256 nLvP~ 260 (454)
-+-..
T Consensus 216 vm~~~ 220 (338)
T COG0206 216 VMKGG 220 (338)
T ss_pred HHhcC
Confidence 77653
No 32
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.49 E-value=8.4e-08 Score=81.61 Aligned_cols=113 Identities=28% Similarity=0.435 Sum_probs=86.1
Q ss_pred CchhhhhhhhcccccCcccccccccccccccccccccccCHhHHHH--hhcccCccccccCCCCCceeeeeccccCCCCh
Q psy17702 246 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQ--QMFDAKNMMVACDPRHGKYLTVAAIFRGQMSM 323 (454)
Q Consensus 246 ~n~~~~~l~~nLvP~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~--~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~ 323 (454)
+|.|+.++.++|+|+| |+.++++|.... .+..+..+++. .++++.+++..+++.. |+++.. +...
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 4789999999999999 899999999752 34456677766 7888887776665543 777764 6778
Q ss_pred HHHHHHHHHhc-ccc-cccccccC-CCceeeeeCCCCCCCcceEEEecc-CccchHHHHhhH
Q psy17702 324 KEVDEQMVNAQ-KNA-DYYVEWIP-NNVKTAVCDIPPKGLKMSGTFIGN-TTAIQGLFKRIS 381 (454)
Q Consensus 324 ~~~~~~~~~~~-~~~-~~f~~w~p-~~~~~~~~~~~~~~~~~s~~~l~N-~t~I~~~l~~l~ 381 (454)
+++.+.+..++ +.. ..|+.|.| ..+++. .+.++++| +|+|..+|+++.
T Consensus 68 ~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~~----------~~~~~i~ni~t~i~~~~~~~~ 119 (120)
T smart00865 68 KEVNEAMERIREKADPDAFIIWGPVIDEELG----------GDEIRVTVIATGIGSAFKRLS 119 (120)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccccCCcCC----------CCcEEEEEEecccCccccccC
Confidence 89998888887 444 78899998 444321 45788999 999999988763
No 33
>PF13809 Tubulin_2: Tubulin like
Probab=97.57 E-value=0.0013 Score=66.83 Aligned_cols=103 Identities=22% Similarity=0.158 Sum_probs=61.2
Q ss_pred ccccCCCCCCcccccccc---chhhHHHHHHHHHHHhhh-c-CCC--C--CceEEeecCCCccccchHHHHHHhhhhC--
Q psy17702 91 VYGQSGAGNNWAKGHYTE---GAELVDVIMDVVRRESEN-C-DCL--Q--GFQLTHSIGGGTGSGMGTLLISKIRDEY-- 159 (454)
Q Consensus 91 i~~~~~~gnn~a~G~~~~---g~~~~d~~~d~ir~~~E~-c-d~l--q--gf~i~~s~~GGtGSG~~s~l~e~L~dey-- 159 (454)
.....|+|..-+.|+... -.++.+.+.+.++..+++ - ... + -++|++|++||||||+---++-.||+.+
T Consensus 99 ~~~~~GAgq~R~~GRla~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGTGSG~~lDia~~lr~~~~~ 178 (345)
T PF13809_consen 99 TPLSAGAGQIRALGRLAFFSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGTGSGMFLDIAYLLRDILKQ 178 (345)
T ss_pred CchhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCccchhHHHHHHHHHHHHhhc
Confidence 334567887777775322 223344444444421111 0 000 1 2688999999999999999999999866
Q ss_pred ---CCceeeEEEeecCCCCCC---ccchhhHHHHHHHHHh
Q psy17702 160 ---PDRIMNTFSVVPSPKVSD---TVVEPYNAILSVHQLI 193 (454)
Q Consensus 160 ---p~~~i~~~~v~P~~~~~~---~~~~~yN~~lsl~~l~ 193 (454)
....+..+.++|...... .....-|+.=+|.+|.
T Consensus 179 ~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~ 218 (345)
T PF13809_consen 179 PGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELD 218 (345)
T ss_pred ccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHH
Confidence 345688889999842111 1233446665555553
No 34
>PLN02847 triacylglycerol lipase
Probab=73.62 E-value=10 Score=41.13 Aligned_cols=63 Identities=21% Similarity=0.304 Sum_probs=43.5
Q ss_pred cccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhh--hCCCceeeEEE
Q psy17702 102 AKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRD--EYPDRIMNTFS 168 (454)
Q Consensus 102 a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~d--eyp~~~i~~~~ 168 (454)
.+|++...+.+.+.+...|++.++++...+-+++-||+|||+ ++.+.-.|+. +|++...++|+
T Consensus 223 H~Gml~AArwI~~~i~~~L~kal~~~PdYkLVITGHSLGGGV----AALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 223 HCGMVAAARWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGT----AALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEeccChHHHH----HHHHHHHHhcCCCCCCceEEEec
Confidence 344554455677778888899999998877777889998766 5555555554 46665555555
No 35
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=72.64 E-value=16 Score=33.39 Aligned_cols=108 Identities=12% Similarity=0.172 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCceeeEEEeecCCCCCCccchhhHHHHHHHHH
Q psy17702 113 VDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQL 192 (454)
Q Consensus 113 ~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l 192 (454)
...+.+.|++.+|+ .+. -++.+.+-|+- -+++.++-.|+.+||...+ .+++|+...+..--+ ..-.-+..|
T Consensus 28 k~~L~~~i~~lie~--G~~--~fi~GgalG~D-~waae~vl~LK~~yp~ikL--~~v~Pf~~q~~~W~~--~~q~~y~~i 98 (177)
T PF06908_consen 28 KKALKKQIIELIEE--GVR--WFITGGALGVD-LWAAEVVLELKKEYPEIKL--ALVLPFENQGNNWNE--ANQERYQSI 98 (177)
T ss_dssp HHHHHHHHHHHHTT--T----EEEE---TTHH-HHHHHHHHTTTTT-TT-EE--EEEESSB-TTTTS-H--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--CCC--EEEECCcccHH-HHHHHHHHHHHhhhhheEE--EEEEcccchhhcCCH--HHHHHHHHH
Confidence 44555666666664 232 23333333442 4467777789999996443 677898644432222 334557778
Q ss_pred hhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCcc
Q psy17702 193 IEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238 (454)
Q Consensus 193 ~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (454)
.+.||-++++........ ..|..-|+-+..+-..+.+
T Consensus 99 l~~aD~v~~vs~~~Y~~~---------~~~~~rn~fMvdhsd~~ia 135 (177)
T PF06908_consen 99 LEQADFVVVVSERPYYSP---------GQLQKRNRFMVDHSDGLIA 135 (177)
T ss_dssp HHH-SEEEESSSSB---H---------HHHHHHHHHHHHHSSEEEE
T ss_pred HHhCCEEEEccCCCCCCH---------HHHHHHhHHHHhCCCeEEE
Confidence 888999998875422211 1244556666555544443
No 36
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=69.35 E-value=13 Score=31.08 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCceEEeecCCCcc
Q psy17702 113 VDVIMDVVRRESENCDCLQGFQLTHSIGGGTG 144 (454)
Q Consensus 113 ~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtG 144 (454)
.+.+.+++++.+++.+.-+|++++.++.|||-
T Consensus 40 ~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 40 IEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp HHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 56777888888888888899999999998874
No 37
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=69.14 E-value=4.9 Score=34.62 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhh
Q psy17702 113 VDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDE 158 (454)
Q Consensus 113 ~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~de 158 (454)
.+...++|+..+++++. +|++++.++ |||- =-....+|.+.++
T Consensus 41 ~gt~~~~i~~ai~~~~~-dGVlVltDL-Gssp-~n~~~a~e~~~~~ 83 (124)
T PRK14484 41 IGTSFDQIQEAIEKNES-DGVLIFFDL-GSAE-MNAEMAIEMLDGE 83 (124)
T ss_pred ccchHHHHHHHHHhcCc-CCeEEEEeC-CChH-HHHHHHHHhcCCC
Confidence 34556888999999999 999999999 7763 2233345555544
No 38
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=64.30 E-value=22 Score=29.96 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCceEEeecCCCccc
Q psy17702 113 VDVIMDVVRRESENCDCLQGFQLTHSIGGGTGS 145 (454)
Q Consensus 113 ~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGS 145 (454)
.+++.+++++.+++.+.=+|++|+.++-|||-.
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~ 73 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSPY 73 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHH
Confidence 566778888888887777899999999999863
No 39
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=62.53 E-value=7.7 Score=33.46 Aligned_cols=29 Identities=28% Similarity=0.657 Sum_probs=23.8
Q ss_pred CCccccchHHHHHHhhhhCCC-ceeeEEEe
Q psy17702 141 GGTGSGMGTLLISKIRDEYPD-RIMNTFSV 169 (454)
Q Consensus 141 GGtGSG~~s~l~e~L~deyp~-~~i~~~~v 169 (454)
+|-|.|+|..+++.||.++|+ ..+++.+.
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~~~eI~AlGT 35 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPEEVEIIALGT 35 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCCCcEEEEEeh
Confidence 366779999999999999998 67776653
No 40
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=62.15 E-value=20 Score=30.43 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCceEEeecCCCcc
Q psy17702 113 VDVIMDVVRRESENCDCLQGFQLTHSIGGGTG 144 (454)
Q Consensus 113 ~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtG 144 (454)
.+.+.+++++.+++.+.-+|++++.++-|||-
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp 71 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGSP 71 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCH
Confidence 45677788888888887789999999998874
No 41
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=49.95 E-value=54 Score=33.22 Aligned_cols=93 Identities=17% Similarity=0.136 Sum_probs=54.7
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCceeeEEEeecCCCCCCccchhhHHHH
Q psy17702 108 EGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAIL 187 (454)
Q Consensus 108 ~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~l 187 (454)
...+.+..+.+.|+... +..+||+|+|+.+ | =-.++.++..+-...+|-.+++=+-.|....+..-......++
T Consensus 63 mt~~~w~~la~~I~~~~---~~~dG~VVtHGTD--T-meeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 63 MTPEDWQHIADDIKANY---DDYDGFVILHGTD--T-MAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred CCHHHHHHHHHHHHHHh---ccCCeEEEeeccc--h-HHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 34566777777777655 5689999999765 4 2557777776555445656666677787543333333333344
Q ss_pred HHHHHhhccceeEEecChh
Q psy17702 188 SVHQLIEHTDETYCIDNEA 206 (454)
Q Consensus 188 sl~~l~e~sd~~i~~~N~~ 206 (454)
.+..-....-+.++|++.-
T Consensus 137 ~~A~~~~~~GV~V~f~~~i 155 (335)
T PRK09461 137 YVAANYPINEVTLFFNNKL 155 (335)
T ss_pred HHHcCCCCCeEEEEECCEe
Confidence 3433222334555555543
No 42
>PRK13660 hypothetical protein; Provisional
Probab=46.38 E-value=95 Score=28.58 Aligned_cols=108 Identities=13% Similarity=0.213 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCceeeEEEeecCCCCCCccchhhHHHHHHHHH
Q psy17702 113 VDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQL 192 (454)
Q Consensus 113 ~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l 192 (454)
...+.+.|+..+|+ .+.=|++-..+ |+- =.++-++-.|+.+||...+ ..++|+...++.=.+ ..-.-+..|
T Consensus 28 K~aL~~~l~~~~e~--G~~wfi~ggal--G~d-~wAaEvvl~LK~~yp~lkL--~~~~PF~~q~~~W~e--~~q~~y~~i 98 (182)
T PRK13660 28 KKAIKRKLIALLEE--GLEWVIISGQL--GVE-LWAAEVVLELKEEYPDLKL--AVITPFEEHGENWNE--ANQEKLANI 98 (182)
T ss_pred HHHHHHHHHHHHHC--CCCEEEECCcc--hHH-HHHHHHHHHHHhhCCCeEE--EEEeCccchhhcCCH--HHHHHHHHH
Confidence 34555666666663 34323222211 221 2366778889999996543 456787643322111 223345677
Q ss_pred hhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCcc
Q psy17702 193 IEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238 (454)
Q Consensus 193 ~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (454)
.+.+|-++.+...- .. ....|..-|+.+..+-..+.+
T Consensus 99 ~~~aD~v~~vs~~~--------y~-~p~q~~~rn~fmv~~sd~~i~ 135 (182)
T PRK13660 99 LKQADFVKSISKRP--------YE-SPAQFRQYNQFMLEHTDGALL 135 (182)
T ss_pred HHhCCEEEEecCCC--------CC-ChHHHHHHHHHHHHccCeEEE
Confidence 78899999886321 00 011356667776666555443
No 43
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=43.25 E-value=39 Score=29.44 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=36.5
Q ss_pred ccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhC
Q psy17702 103 KGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEY 159 (454)
Q Consensus 103 ~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~dey 159 (454)
+|++.....+...+...+++...++..-+-+++-||+||+ ++..+...++...
T Consensus 1 ~Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~----lA~l~a~~~~~~~ 53 (153)
T cd00741 1 KGFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGA----LAGLAGLDLRGRG 53 (153)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHH----HHHHHHHHHHhcc
Confidence 3666666777777777887777766776777778999754 4555666666543
No 44
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=42.40 E-value=8.5 Score=32.87 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=36.9
Q ss_pred ccccccccch-hhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCC
Q psy17702 101 WAKGHYTEGA-ELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPD 161 (454)
Q Consensus 101 ~a~G~~~~g~-~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~ 161 (454)
-..|++..-. ...+.+.+.|++.+++.....-++.=||+|| +++..+.-.+....+.
T Consensus 34 vh~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGG----alA~l~a~~l~~~~~~ 91 (140)
T PF01764_consen 34 VHSGFLDAAEDSLYDQILDALKELVEKYPDYSIVITGHSLGG----ALASLAAADLASHGPS 91 (140)
T ss_dssp EEHHHHHHHHCHHHHHHHHHHHHHHHHSTTSEEEEEEETHHH----HHHHHHHHHHHHCTTT
T ss_pred EehhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhccchHH----HHHHHHHHhhhhcccc
Confidence 3445554444 6677888889888887665333444599974 4566666666666543
No 45
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=38.18 E-value=29 Score=29.82 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhcCC-CCCceEEeecCCCccccchH-HHHHHhh
Q psy17702 114 DVIMDVVRRESENCDC-LQGFQLTHSIGGGTGSGMGT-LLISKIR 156 (454)
Q Consensus 114 d~~~d~ir~~~E~cd~-lqgf~i~~s~~GGtGSG~~s-~l~e~L~ 156 (454)
+...++|++.+|+++. =+|++++.++ ||+ =+.+ ..++.+.
T Consensus 42 gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs--~~n~e~a~~~l~ 83 (125)
T TIGR02364 42 GTSPDKIIEAIEKADNEADGVLIFYDL-GSA--VMNAEMAVELLE 83 (125)
T ss_pred cchHHHHHHHHHHhcCCCCCEEEEEcC-CCc--HhHHHHHHHHhc
Confidence 4456788888999866 7999999999 665 2322 3455554
No 46
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=37.88 E-value=1.1e+02 Score=30.67 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=49.8
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCceeeEEEeecCCCCC-CccchhhHHH
Q psy17702 108 EGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVS-DTVVEPYNAI 186 (454)
Q Consensus 108 ~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~i~~~~v~P~~~~~-~~~~~~yN~~ 186 (454)
...+.+..+.+.|++.+++ .+||+|+|+.+ |= -.++..+..+-+..+|-.+++=+..|....+ |.....++++
T Consensus 54 ~t~~~~~~la~~i~~~~~~---~~GvVVtHGTD--Tm-e~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av 127 (313)
T PF00710_consen 54 MTPEDWLELARAIQAALDD---YDGVVVTHGTD--TM-EETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAV 127 (313)
T ss_dssp --HHHHHHHHHHHHHHHTT---CSEEEEE--ST--TH-HHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh---cCeEEEecCch--HH-HHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHH
Confidence 3455667777777777744 89999999765 31 4456666665555556666777788875433 4344444444
Q ss_pred HHHHHHhhccceeEEecCh
Q psy17702 187 LSVHQLIEHTDETYCIDNE 205 (454)
Q Consensus 187 lsl~~l~e~sd~~i~~~N~ 205 (454)
....+-. ..-+.++|++.
T Consensus 128 ~~A~~~~-~~GV~v~f~~~ 145 (313)
T PF00710_consen 128 RVAASPA-GPGVLVVFNGR 145 (313)
T ss_dssp HHHHSGG-TSSEEEEETTE
T ss_pred HHHhccc-CCceEEEeCCC
Confidence 4443333 55566666655
No 47
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=36.07 E-value=1.2e+02 Score=30.55 Aligned_cols=93 Identities=15% Similarity=0.084 Sum_probs=55.7
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCceeeEEEeecCCCCCCccchhhHHHH
Q psy17702 108 EGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAIL 187 (454)
Q Consensus 108 ~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~l 187 (454)
...+.+..+.+.|++..++ .+||+|+|+.+ |= -.++..+..+-+. +|-.+++=+-.|....+..-......++
T Consensus 60 ~t~~~w~~l~~~I~~~~~~---~dGiVVtHGTD--Tm-eeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al 132 (323)
T cd00411 60 MTDEDWLKIAKDINELYDS---YDGFVITHGTD--TM-EETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHHHh---cCcEEEEcCcc--cH-HHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 3456667777777776663 79999999765 32 4566666655444 5656666677787544444444444444
Q ss_pred HHHHHhh--ccceeEEecChhh
Q psy17702 188 SVHQLIE--HTDETYCIDNEAL 207 (454)
Q Consensus 188 sl~~l~e--~sd~~i~~~N~~l 207 (454)
.+....+ ...+.|+|++.-+
T Consensus 133 ~~A~~~~~~~~gV~V~f~~~i~ 154 (323)
T cd00411 133 YVAANYDSRGRGVLVVFNDRIF 154 (323)
T ss_pred HHHcCcccCCCeEEEEECCEEe
Confidence 4443322 4456777765533
No 48
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=34.15 E-value=46 Score=31.23 Aligned_cols=75 Identities=20% Similarity=0.308 Sum_probs=47.6
Q ss_pred CCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCceeeEEEeecCCCCCC
Q psy17702 98 GNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSD 177 (454)
Q Consensus 98 gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~i~~~~v~P~~~~~~ 177 (454)
+.-..+|++.....+.+.+...++...+++...+-++.-||+||+ +++.+.-.|+..++... +...+|-.+..++
T Consensus 96 ~~~vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGa----iA~l~a~~l~~~~~~~~-i~~~tFg~P~vg~ 170 (229)
T cd00519 96 GGKVHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGA----LASLLALDLRLRGPGSD-VTVYTFGQPRVGN 170 (229)
T ss_pred CcEEcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHH----HHHHHHHHHHhhCCCCc-eEEEEeCCCCCCC
Confidence 344566777666777788888888888887776667777999754 56666666666643322 2333333433444
No 49
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=33.19 E-value=1.4e+02 Score=31.18 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=55.4
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCceeeEEEeecCCCCC-CccchhhHHH
Q psy17702 108 EGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVS-DTVVEPYNAI 186 (454)
Q Consensus 108 ~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~i~~~~v~P~~~~~-~~~~~~yN~~ 186 (454)
...+.+..+-+.|++.++ +..+||+|+|+.+ |= -.++..+..+-+..||-.+++=+-.|....+ |....-++++
T Consensus 120 mtp~~w~~La~~I~~~~~--~~~dGvVVtHGTD--TM-~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 194 (404)
T TIGR02153 120 MKPEYWIKIAEAVAKALK--EGADGVVVAHGTD--TM-AYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAV 194 (404)
T ss_pred CCHHHHHHHHHHHHHHhh--cCCCcEEEecCCh--hH-HHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHH
Confidence 345667777888887775 4579999999765 42 5566666654444455556666677765423 4444444444
Q ss_pred HHHHHHhhccceeEEecCh
Q psy17702 187 LSVHQLIEHTDETYCIDNE 205 (454)
Q Consensus 187 lsl~~l~e~sd~~i~~~N~ 205 (454)
..-.. ..+-+.++|++.
T Consensus 195 ~~A~~--~~~gV~V~f~g~ 211 (404)
T TIGR02153 195 RAATS--PIAEVTVVMHGE 211 (404)
T ss_pred HHHhC--CCCcEEEEECCc
Confidence 43322 455677777765
No 50
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=32.54 E-value=1.1e+02 Score=30.74 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCceEEeecCCCcccc
Q psy17702 113 VDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSG 146 (454)
Q Consensus 113 ~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG 146 (454)
.+++.+++++.+++.+.-+|++++.++-|||-.-
T Consensus 42 ~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP~N 75 (322)
T PRK15088 42 AETLIEKYNAQLAKLDTSKGVLFLVDTWGGSPFN 75 (322)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHH
Confidence 5677788888888887778999999999998633
No 51
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=30.42 E-value=38 Score=27.63 Aligned_cols=53 Identities=19% Similarity=0.386 Sum_probs=39.4
Q ss_pred eccCccchHHHH-------hhHHHHhhhcccccchhhcccCCCC--hhcHHHHHHHHHHHHHHHHHH
Q psy17702 367 IGNTTAIQGLFK-------RISEQFTSMFRRKAFLHWYTGEGMD--EMEFSESGSNVTDVISEYQQY 424 (454)
Q Consensus 367 l~N~t~I~~~l~-------~l~~~~~~m~~krAflH~Y~~~Gme--e~eF~Ea~~~l~~l~~~Y~~~ 424 (454)
++|.++|...|. ++++...++-.+|+|. ||+. -....||+..|..+.+++.+=
T Consensus 28 IanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~-----E~lQdkL~qi~eAR~AlDalR~eH~~k 89 (96)
T PF12210_consen 28 IANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYY-----EGLQDKLAQIKEARAALDALREEHREK 89 (96)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777775 4567777788888655 5664 347899999999999999854
No 52
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=29.83 E-value=28 Score=31.53 Aligned_cols=47 Identities=13% Similarity=0.345 Sum_probs=28.2
Q ss_pred chHHHHhhHHHHhh--hcccccchhhcccCCCChhcHHHHHHHHHHHHHHHHHHh
Q psy17702 373 IQGLFKRISEQFTS--MFRRKAFLHWYTGEGMDEMEFSESGSNVTDVISEYQQYQ 425 (454)
Q Consensus 373 I~~~l~~l~~~~~~--m~~krAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~ 425 (454)
|...+.+|.+-+.. =|..-.||+||+.|+.||+. .+.+|++.++-+.
T Consensus 97 vt~~I~~L~~~a~~~kD~~T~nFLqWfv~EQ~eEe~------l~~~I~d~~~~ag 145 (167)
T COG1528 97 VTSSINELAEVAREEKDYATFNFLQWFVAEQVEEEK------LFKTILDKLELAG 145 (167)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHcC
Confidence 34444444444433 35667899999999987654 3345555555443
No 53
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=28.58 E-value=36 Score=33.86 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=36.5
Q ss_pred CCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCceeeEEEeecC
Q psy17702 96 GAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPS 172 (454)
Q Consensus 96 ~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~i~~~~v~P~ 172 (454)
+.-.||.-=|++.|+|+++..... ++.| +.++ ||| |.-+-+.+.||+.+|+..++ +|=|.
T Consensus 146 ~NpaN~~aH~~tT~~EI~~~~~g~----------~d~f--Vagv--GTG-GTitGvar~Lk~~~p~i~iv--~vdP~ 205 (300)
T COG0031 146 ENPANPEAHYETTGPEIWQQTDGK----------VDAF--VAGV--GTG-GTITGVARYLKERNPNVRIV--AVDPE 205 (300)
T ss_pred CCCccHHHHHhhhHHHHHHHhCCC----------CCEE--EEeC--Ccc-hhHHHHHHHHHhhCCCcEEE--EECCC
Confidence 445666665666777655433222 3333 3444 565 77888899999999985554 44443
No 54
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=28.40 E-value=1.5e+02 Score=23.00 Aligned_cols=52 Identities=8% Similarity=0.231 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhhc--CCCCCceEEeecC----CCccccchHHHHHHhhhhCCCceeeEEE
Q psy17702 114 DVIMDVVRRESENC--DCLQGFQLTHSIG----GGTGSGMGTLLISKIRDEYPDRIMNTFS 168 (454)
Q Consensus 114 d~~~d~ir~~~E~c--d~lqgf~i~~s~~----GGtGSG~~s~l~e~L~deyp~~~i~~~~ 168 (454)
++..+.++..+++| ...+.+.|+++.| +|. +...+.+.|++.+....+..+.
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~ 66 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYR 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheee
Confidence 44555666666655 3567789999988 554 7777788887655555555553
No 55
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=28.37 E-value=60 Score=30.79 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=21.6
Q ss_pred EEeecCCCccccchHHHHHHhhhhCCCc
Q psy17702 135 LTHSIGGGTGSGMGTLLISKIRDEYPDR 162 (454)
Q Consensus 135 i~~s~~GGtGSG~~s~l~e~L~deyp~~ 162 (454)
++-+++||+|||= +-++..|.+.++..
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 5668999999998 66788888888744
No 56
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=27.19 E-value=1.3e+02 Score=29.52 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=50.2
Q ss_pred HHHHHHhhhcCCCCCceEEeecCCCccccch-----HHHHHHhhhhCCCceeeEEEeecCCCCCCccchhhHHHHHHHHH
Q psy17702 118 DVVRRESENCDCLQGFQLTHSIGGGTGSGMG-----TLLISKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQL 192 (454)
Q Consensus 118 d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~-----s~l~e~L~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l 192 (454)
++|++.++.+ +||+-+-|+.|=||.-.. ..+++++|.--..-....|+|-. --...++
T Consensus 161 ~rl~~i~~~a---~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~--------------~e~~~~v 223 (265)
T COG0159 161 ERLKKIAEAA---SGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISS--------------PEQAAQV 223 (265)
T ss_pred HHHHHHHHhC---CCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCC--------------HHHHHHH
Confidence 5666666654 789999999999997554 55667777644222344454421 1235667
Q ss_pred hhccceeEEecChhhHhhhhcc
Q psy17702 193 IEHTDETYCIDNEALYDICHRT 214 (454)
Q Consensus 193 ~e~sd~~i~~~N~~l~~~~~~~ 214 (454)
.+.+|++|+ -+++.++..+.
T Consensus 224 ~~~ADGVIV--GSAiV~~i~~~ 243 (265)
T COG0159 224 AEAADGVIV--GSAIVKIIEEG 243 (265)
T ss_pred HHhCCeEEE--cHHHHHHHHhc
Confidence 788999988 44666665543
No 57
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=27.08 E-value=1.6e+02 Score=29.82 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=47.3
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCceeeEEEeecCCCCCCccchhhHHHH
Q psy17702 108 EGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAIL 187 (454)
Q Consensus 108 ~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~l 187 (454)
...+.+..+.+.|++..++ .+||+|+|+.+ |= -.++..+..+-+. +|-.+++=+-.|....+..-......++
T Consensus 59 ~tp~~w~~la~~I~~~~~~---~dG~VVtHGTD--Tm-e~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al 131 (336)
T TIGR00519 59 MKPEYWVEIAEAVKKEYDD---YDGFVITHGTD--TM-AYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAV 131 (336)
T ss_pred CCHHHHHHHHHHHHHHHhc---CCeEEEccCCc--hH-HHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 3456677777778776663 79999999765 42 5566666654444 5656666677787543433344444444
Q ss_pred HHHH
Q psy17702 188 SVHQ 191 (454)
Q Consensus 188 sl~~ 191 (454)
....
T Consensus 132 ~~A~ 135 (336)
T TIGR00519 132 RAAT 135 (336)
T ss_pred HHHc
Confidence 4443
No 58
>PF03283 PAE: Pectinacetylesterase
Probab=26.62 E-value=91 Score=31.95 Aligned_cols=52 Identities=23% Similarity=0.376 Sum_probs=34.1
Q ss_pred ccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCC
Q psy17702 105 HYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPD 161 (454)
Q Consensus 105 ~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~ 161 (454)
.|..|..+.+.+++.|... .-+..+-+++..+.+||.| +-.-++.+++.+|.
T Consensus 132 l~frG~~i~~avl~~l~~~--gl~~a~~vlltG~SAGG~g---~~~~~d~~~~~lp~ 183 (361)
T PF03283_consen 132 LYFRGYRILRAVLDDLLSN--GLPNAKQVLLTGCSAGGLG---AILHADYVRDRLPS 183 (361)
T ss_pred eEeecHHHHHHHHHHHHHh--cCcccceEEEeccChHHHH---HHHHHHHHHHHhcc
Confidence 3556778888877777665 1233344677777666654 33338889999994
No 59
>PLN02408 phospholipase A1
Probab=26.09 E-value=1.4e+02 Score=30.66 Aligned_cols=64 Identities=19% Similarity=0.319 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHhhhcCCCC-CceE-EeecCCCccccchHHHHHHhhhhCCCceeeEEEeecCCCCCCc
Q psy17702 111 ELVDVIMDVVRRESENCDCLQ-GFQL-THSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDT 178 (454)
Q Consensus 111 ~~~d~~~d~ir~~~E~cd~lq-gf~i-~~s~~GGtGSG~~s~l~e~L~deyp~~~i~~~~v~P~~~~~~~ 178 (454)
.+.+++++.|++.+++...-+ .+.+ -||+|| .++.+.+-.|+..++..+.+.+..|-.+..|+.
T Consensus 179 s~r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGG----ALAtLaA~dl~~~~~~~~~V~v~tFGsPRVGN~ 244 (365)
T PLN02408 179 SLQEMVREEIARLLQSYGDEPLSLTITGHSLGA----ALATLTAYDIKTTFKRAPMVTVISFGGPRVGNR 244 (365)
T ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEeccchHH----HHHHHHHHHHHHhcCCCCceEEEEcCCCCcccH
Confidence 467788888888888775432 2333 499863 467777777888776655555566666656643
No 60
>PLN02371 phosphoglucosamine mutase family protein
Probab=25.88 E-value=1.8e+02 Score=31.87 Aligned_cols=71 Identities=13% Similarity=0.289 Sum_probs=43.3
Q ss_pred CCCceEEeecCCCccccchHHHHHHhhhhCCCceeeEEE-----eecCCCCCCccchhhHHHHHHHHHh-hccceeEEec
Q psy17702 130 LQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFS-----VVPSPKVSDTVVEPYNAILSVHQLI-EHTDETYCID 203 (454)
Q Consensus 130 lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~i~~~~-----v~P~~~~~~~~~~~yN~~lsl~~l~-e~sd~~i~~~ 203 (454)
++++-|+.+.+.|+|+++.+.+++.|--+ .+...- .||.. ...+..+.|--....... ..+|+.|.+|
T Consensus 261 ~~~lkIvvD~~nGag~~~~~~lL~~LG~~----v~~~~~~~pDg~Fp~~--~P~P~~~~~l~~l~~~v~~~~aDlGia~D 334 (583)
T PLN02371 261 LEGFKIVVDAGNGAGGFFAEKVLEPLGAD----TSGSLFLEPDGMFPNH--IPNPEDKAAMSATTQAVLANKADLGIIFD 334 (583)
T ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCC----eEeeccCCCCCCCCCc--CCCCCCHHHHHHHHHHHHhcCCCEEEEEC
Confidence 57999999999999999999999887432 111111 22221 122233333333333333 3489999999
Q ss_pred Chh
Q psy17702 204 NEA 206 (454)
Q Consensus 204 N~~ 206 (454)
-|+
T Consensus 335 gDa 337 (583)
T PLN02371 335 TDV 337 (583)
T ss_pred CCc
Confidence 775
No 61
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=25.84 E-value=2.1e+02 Score=28.72 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=51.7
Q ss_pred chhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCceeeEEEeecCCCCCCccchhhHHHHH
Q psy17702 109 GAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILS 188 (454)
Q Consensus 109 g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~ls 188 (454)
..+.+..+.+.|+..+.. +..+||+|+|+.+ |= -.++..+..+-+..+|-.+++=+-.|....+..-......++.
T Consensus 58 t~~~w~~la~~i~~~~~~-~~~dG~VVtHGTD--Tm-eeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av~ 133 (323)
T smart00870 58 TPADWLKLAKRINEALAD-DGYDGVVVTHGTD--TL-EETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAVR 133 (323)
T ss_pred CHHHHHHHHHHHHHHhcc-CCCCEEEEecCCc--cH-HHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHHH
Confidence 345555666666654432 5789999999765 32 4566666655554455566666777765433333333333333
Q ss_pred HHHHhh--ccceeEEecChhhH
Q psy17702 189 VHQLIE--HTDETYCIDNEALY 208 (454)
Q Consensus 189 l~~l~e--~sd~~i~~~N~~l~ 208 (454)
+..-.+ ..-+.++|+ +.++
T Consensus 134 ~A~~~~a~~~GV~V~f~-~~i~ 154 (323)
T smart00870 134 VAASPEARGRGVLVVFN-DEIH 154 (323)
T ss_pred HHcCcccCCCEEEEEEC-CEee
Confidence 332222 334555565 4454
No 62
>PTZ00489 glutamate 5-kinase; Provisional
Probab=24.46 E-value=2.5e+02 Score=27.42 Aligned_cols=49 Identities=20% Similarity=0.110 Sum_probs=28.7
Q ss_pred hhhhCCCceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecCh
Q psy17702 155 IRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNE 205 (454)
Q Consensus 155 L~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~ 205 (454)
..+.|.+..+.+..+++............|+.-++..|.+. .++|+=|+
T Consensus 87 y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~--g~VPIine 135 (264)
T PTZ00489 87 YYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISH--KVIPIINE 135 (264)
T ss_pred HHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHC--CCEEEECC
Confidence 34444444555566666543233344455888888888876 56676544
No 63
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=24.24 E-value=32 Score=16.61 Aligned_cols=7 Identities=57% Similarity=1.578 Sum_probs=5.3
Q ss_pred cccccCc
Q psy17702 256 NMVPFPR 262 (454)
Q Consensus 256 nLvP~p~ 262 (454)
-|+||||
T Consensus 4 GlI~fpR 10 (11)
T PF08259_consen 4 GLIPFPR 10 (11)
T ss_pred cccccCC
Confidence 4788887
No 64
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=23.34 E-value=91 Score=25.27 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=21.7
Q ss_pred CCceEEeecCCCccccchHHHHHHhhh
Q psy17702 131 QGFQLTHSIGGGTGSGMGTLLISKIRD 157 (454)
Q Consensus 131 qgf~i~~s~~GGtGSG~~s~l~e~L~d 157 (454)
.+|-|+.+...|+|+.+.+.|++.|.-
T Consensus 20 ~~~kivvD~~~G~~~~~~~~ll~~lg~ 46 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGSDILPRLLERLGC 46 (104)
T ss_dssp TTCEEEEE-TTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 578999999999998888888888765
No 65
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=22.75 E-value=1.4e+02 Score=32.09 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHhh-hcCCCCCceEEeecCCCccccchHHHHHHhh
Q psy17702 111 ELVDVIMDVVRRESE-NCDCLQGFQLTHSIGGGTGSGMGTLLISKIR 156 (454)
Q Consensus 111 ~~~d~~~d~ir~~~E-~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~ 156 (454)
++.+...+.|.+.+. +.....++-|+.+.+.|+|+.+.+.|++.|-
T Consensus 188 ~~~~~Y~~~l~~~v~~~~~~~~~lkVvvd~~~G~~~~~~~~ll~~lG 234 (522)
T cd05801 188 DFVTPYVADLGNVIDMDAIRKSGLRLGVDPLGGASVPYWQPIAEKYG 234 (522)
T ss_pred CcHHHHHHHHHHhhChhhhhcCCceEEEeCCCCccHHHHHHHHHHcC
Confidence 444555555555442 1122468999999999999999999988874
No 66
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=22.36 E-value=3.9e+02 Score=28.25 Aligned_cols=90 Identities=12% Similarity=0.113 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCceeeEEEeecCCC---CCCccchhhHHHHH
Q psy17702 112 LVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPK---VSDTVVEPYNAILS 188 (454)
Q Consensus 112 ~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~i~~~~v~P~~~---~~~~~~~~yN~~ls 188 (454)
..+...+.|++.+..-..+.++-|+.+.+.|+|+.+.+.+++.|- ..++.....|... ....+..+.+..|.
T Consensus 158 ~~~~Y~~~i~~~~~~~~~~~~lkVv~d~~nGaa~~~~~~ll~~lG-----~~vv~~~~~pDg~fp~~~p~p~~~~~~~l~ 232 (464)
T COG1109 158 ALDRYIEFIKSLVDVDLKLRGLKVVVDCANGAAGLVAPRLLKELG-----AEVVSINCDPDGLFPNINPNPGETELLDLA 232 (464)
T ss_pred hHHHHHHHHHHhcccccccCCcEEEEECCCCchhHHHHHHHHHcC-----CEEEEecCCCCCCCCCCCCCCCCccHHHHH
Confidence 445555666655543346778999999999998888887777754 3444443333321 11334444444333
Q ss_pred HHHHhhccceeEEecChh
Q psy17702 189 VHQLIEHTDETYCIDNEA 206 (454)
Q Consensus 189 l~~l~e~sd~~i~~~N~~ 206 (454)
..-....+|+.+-+|-|+
T Consensus 233 ~~v~~~~aDlgia~DgDa 250 (464)
T COG1109 233 KAVKEHGADLGIAFDGDA 250 (464)
T ss_pred HHHHhcCCCEEEEecCCC
Confidence 222223699999999886
No 67
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=22.33 E-value=48 Score=32.36 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHh
Q psy17702 115 VIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKI 155 (454)
Q Consensus 115 ~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L 155 (454)
++++++|+.+.+-.-+ +|+|.|+|++++..|.=
T Consensus 2 eil~~l~~~i~~~~pI--------ig~gaGtGlsAk~ae~g 34 (268)
T PF09370_consen 2 EILDRLRAQIKAGKPI--------IGAGAGTGLSAKCAEKG 34 (268)
T ss_dssp HHHHHHHHHHHTT--E--------EEEEESSHHHHHHHHHT
T ss_pred hHHHHHHHHHhCCCce--------EEEeeccchhhHHHHhc
Confidence 5788888888865443 45677889998888763
No 68
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=21.84 E-value=2.9e+02 Score=29.00 Aligned_cols=90 Identities=18% Similarity=0.125 Sum_probs=55.6
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCceeeEEEeecCCCCC-CccchhhHHH
Q psy17702 108 EGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVS-DTVVEPYNAI 186 (454)
Q Consensus 108 ~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~i~~~~v~P~~~~~-~~~~~~yN~~ 186 (454)
...+.+..+-+.|++.++. ..+||+|+|+.+ |= -.++..+..+- ..|+-.+++=+-.|....+ +.....++++
T Consensus 133 mtp~~W~~La~~I~~~~~~--~~dGvVVtHGTD--TM-~yTA~aLs~~l-~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 206 (419)
T PRK04183 133 MTPEYWVEIAEAVYEEIKN--GADGVVVAHGTD--TM-HYTAAALSFML-KTPVPIVFVGAQRSSDRPSSDAAMNLICAV 206 (419)
T ss_pred CCHHHHHHHHHHHHHHhhc--cCCeEEEecCCc--hH-HHHHHHHHHhc-CCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 4456677888888887763 589999999775 42 45666665544 4455556666677765333 3333334444
Q ss_pred HHHHHHhhccceeEEecCh
Q psy17702 187 LSVHQLIEHTDETYCIDNE 205 (454)
Q Consensus 187 lsl~~l~e~sd~~i~~~N~ 205 (454)
. +.. ...+.+.++|+++
T Consensus 207 ~-~A~-~~~~gV~Vvf~g~ 223 (419)
T PRK04183 207 L-AAT-SDIAEVVVVMHGT 223 (419)
T ss_pred H-HHh-CCCCcEEEEECCc
Confidence 3 333 3455677777765
No 69
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=21.38 E-value=1.4e+02 Score=26.27 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=34.4
Q ss_pred CCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHH
Q psy17702 99 NNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLIS 153 (454)
Q Consensus 99 nn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e 153 (454)
|-++..++. +.+..+...+.+...++.-|+=+|++++.++-|||-+-.+++++.
T Consensus 29 nv~~v~~~~-~~~~~~~l~~~~~~~~~~~d~~eevl~ltDl~GGSP~N~A~~l~~ 82 (143)
T COG2893 29 NVEAVDFVP-GEDSEDLLTKQIAAAIAALDSGEGVLFLTDLFGGSPFNVASRLAM 82 (143)
T ss_pred ceEEEEeec-CCChHHHHHHHHHHHHhhcCCCCcEEEEEecCCCCHhHHHHHHHh
Confidence 334444432 223344555666666666777799999999999996665555543
No 70
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=21.20 E-value=6.2e+02 Score=26.61 Aligned_cols=94 Identities=12% Similarity=0.069 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCceeeEEEeecCCCC---CCccchhhHHHHH
Q psy17702 112 LVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKV---SDTVVEPYNAILS 188 (454)
Q Consensus 112 ~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~i~~~~v~P~~~~---~~~~~~~yN~~ls 188 (454)
+.+...+.|.+.+. .+.++++-|+.+.+.|+|+++.+.|++.|+.-=-....++.-.-|.... ...+..+.|--..
T Consensus 151 ~~~~Yi~~l~~~id-~~~~~~lkVvvD~~~G~~~~~~~~l~~~l~~lG~~v~v~~~~~~pdg~F~~~~p~P~~~~~l~~l 229 (456)
T PRK15414 151 LRDAYVDHLFGYIN-VKNLTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIPNPLLPECRDDT 229 (456)
T ss_pred cHHHHHHHHHHhcc-cccCCCCEEEEECCCCcchhhHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCCCCCCHHHHHHH
Confidence 34455555554442 1345799999999999999999988555543200112222222222111 1122223332222
Q ss_pred HHHH-hhccceeEEecChh
Q psy17702 189 VHQL-IEHTDETYCIDNEA 206 (454)
Q Consensus 189 l~~l-~e~sd~~i~~~N~~ 206 (454)
...+ ...+|+.+.+|-|+
T Consensus 230 ~~~v~~~~adlGia~DgDa 248 (456)
T PRK15414 230 RNAVIKHGADMGIAFDGDF 248 (456)
T ss_pred HHHHHHcCCCEEEEECCCc
Confidence 2222 23489999998775
No 71
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=20.53 E-value=66 Score=19.68 Aligned_cols=13 Identities=38% Similarity=1.025 Sum_probs=9.2
Q ss_pred CCCccccchHHHH
Q psy17702 140 GGGTGSGMGTLLI 152 (454)
Q Consensus 140 ~GGtGSG~~s~l~ 152 (454)
+||.|+|++-.++
T Consensus 1 ~gg~g~gf~livV 13 (26)
T TIGR01732 1 GGGYGGGFALIVV 13 (26)
T ss_pred CCccCcchHHHHH
Confidence 4788888876554
No 72
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=20.27 E-value=1.5e+02 Score=28.97 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=29.5
Q ss_pred CCccccccccchh-hHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCCCceeeEEEe
Q psy17702 99 NNWAKGHYTEGAE-LVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSV 169 (454)
Q Consensus 99 nn~a~G~~~~g~~-~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp~~~i~~~~v 169 (454)
-.|+-|||..+.+ +.+.-..++...+|+++-=.| .=+-++|.|+| |+.- .+...| +..+..+.+
T Consensus 29 m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G-~~vLDiGcGwG-~~~~----~~a~~~-g~~v~gitl 93 (273)
T PF02353_consen 29 MKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPG-DRVLDIGCGWG-GLAI----YAAERY-GCHVTGITL 93 (273)
T ss_dssp ---S----SSTT--HHHHHHHHHHHHHTTTT--TT--EEEEES-TTS-HHHH----HHHHHH---EEEEEES
T ss_pred CCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCC-CEEEEeCCCcc-HHHH----HHHHHc-CcEEEEEEC
Confidence 4566677776666 444455567888888864444 45567776665 4433 344556 444555443
Done!