RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17702
(454 letters)
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B*
3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B*
1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B*
1sa0_B* 1sa1_B* ...
Length = 445
Score = 788 bits (2036), Expect = 0.0
Identities = 366/444 (82%), Positives = 409/444 (92%), Gaps = 1/444 (0%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHV 60
MREIVH+Q GQCGNQIG+KFWEVIS+EHGI G+Y+GDSDLQLERI VYYN+A +V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVV 120
PRA+LVDLEPGTMD+++SG +G+IFRPDNFV+GQSGAGNNWAKGHYTEGAELVD ++DVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVV 180
R+ESE+CDCLQGFQLTHS+GGGTGSGMGTLLISKIR+EYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 181 EPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240
EPYNA LSVHQL+E+TDETY IDNEALYDIC RTLKL TPTY DLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMM 300
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSR S QYR+LTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 301 VACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKG 359
ACDPRHG+YLTVA IFRG+MSMKEVDEQM+N Q KN+ Y+VEWIPNNVKTAVCDIPP+G
Sbjct: 301 AACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 360 LKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVIS 419
LKMS TFIGN+TAIQ LFKRISEQFT+MFRRKAFLHWYTGEGMDEMEF+E+ SN+ D++S
Sbjct: 361 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 420 EYQQYQEATIDDVVYDTEESDDEQ 443
EYQQYQ+AT D+ EE +++
Sbjct: 421 EYQQYQDATADEQGEFEEEEGEDE 444
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 780 bits (2015), Expect = 0.0
Identities = 148/459 (32%), Positives = 244/459 (53%), Gaps = 8/459 (1%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYN---QAAAG 57
+ + + +GQ GNQI + FW+ + EHGI +++ ++++G
Sbjct: 3 VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSG 62
Query: 58 HHVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIM 117
+VPRA++VDLEP +D +K+ G +F P N + GAG N+A G+ G E++ +M
Sbjct: 63 SYVPRAIMVDLEPSVIDNVKAT-SGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVM 121
Query: 118 DVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSD 177
+ E + CD + G + H+IGGGTGSG G LLI ++++Y + + + +V+PSP+VS
Sbjct: 122 SRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSS 181
Query: 178 TVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVT 237
V EPYN + +++ L D DNEAL+D+ HR + +PT DLN L++ ++G+T
Sbjct: 182 VVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGIT 241
Query: 238 TCLRFPGQLNAD--LRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFD 295
+RF G L + LR+L N+VP P LHF M FAPLT + ++ L + E+ + +FD
Sbjct: 242 ASMRFSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFD 301
Query: 296 AKNMMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQKNADYYVEWIPNNVKTAVCDI 355
++ AC P G++L+ A ++RG M K + + + A + WIP K +
Sbjct: 302 NGSVFAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAMREKLPLTYWIPTAFKIGYVEQ 361
Query: 356 PPKGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVT 415
P + S + N T I + RI F +++RKAF +WY EGM E + + ++
Sbjct: 362 PGISHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASAQ 421
Query: 416 DVISEYQQYQEATIDDVVYDTEESDDEQTIAEEGGRRDS 454
+++ YQ +E+ + + D A G D
Sbjct: 422 ELVQSYQVAEESGAKA--KVQDSAGDTGMRAAAAGVSDD 458
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 766 bits (1979), Expect = 0.0
Identities = 165/431 (38%), Positives = 251/431 (58%), Gaps = 8/431 (1%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYN-GDSDLQLERIQVYYNQAAAGHH 59
+REI+ + VGQCGNQI FW + EHG+T GT G + ++V++++ G +
Sbjct: 1 VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKY 60
Query: 60 VPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDV 119
VPRAVLVDLEPG + I+ G ++F + V GA NNWA+G+ EG +++D IM+V
Sbjct: 61 VPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMNV 120
Query: 120 VRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTV 179
+ E LQGF +THSIGGG+GSG+G+L++ ++R YP + + TFSVVPSP +SD+
Sbjct: 121 IDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDSA 180
Query: 180 VEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTC 239
VEPYNAIL++ +++++ D +DNEAL+ I L +P Y DLN++++ +S VT
Sbjct: 181 VEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIVSSVTAS 239
Query: 240 LRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNM 299
LRFPG+LN DL + N+VPFP HF FAP+ P+L ++ F N
Sbjct: 240 LRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARETFAQDNF 299
Query: 300 MVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQKNADYYVEWIP--NNVKTAVCDIPP 357
A D + G YL +A+FRG + K+VDE M + + Y ++P +K + P
Sbjct: 300 TAAIDWQQGVYLAASALFRGDVKAKDVDENMATI-RKSLNYASYMPASGGLKLGYAETAP 358
Query: 358 KGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDV 417
+G SG + N T I +F+R+ QF MF A+ HWY G+ +++ + + +
Sbjct: 359 EGFASSGLALVNHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDMMAKARNQIATL 418
Query: 418 ISEYQQYQEAT 428
Y++A+
Sbjct: 419 AQS---YRDAS 426
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 763 bits (1971), Expect = 0.0
Identities = 157/458 (34%), Positives = 263/458 (57%), Gaps = 12/458 (2%)
Query: 2 REIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVP 61
REI+ LQ+GQCGNQIG +FW+ + EHGI+ + +R V++ QA H++P
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 62 RAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQ--SGAGNNWAKGHYTEGAELVDVIMDV 119
RAVL+DLEP + +I + Y K++ P+N + GAGNNWA G +++G ++ + I D+
Sbjct: 63 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 121
Query: 120 VRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSP-KVSDT 178
+ RE++ D L+GF L HSI GGTGSG+G+ L+ ++ D YP +++ T+SV P+ ++SD
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDV 181
Query: 179 VVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238
VV+PYN++L++ +L ++ D +DN AL I L + P++S +N LVS MS TT
Sbjct: 182 VVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 241
Query: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQ-YRSLTVPELTQQMFDAK 297
LR+PG +N DL L +++P PRLHF M G+ PLT+ S+ R TV ++ +++ K
Sbjct: 242 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 301
Query: 298 NMMVACDPRHGK---YLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVC 353
N+MV+ Y+ + I +G++ +V + + + + ++ W P +++ A+
Sbjct: 302 NVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALS 361
Query: 354 DIPP---KGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSES 410
P ++SG + N T+I LF+R Q+ + +R+AFL + E M + F E
Sbjct: 362 RKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEM 421
Query: 411 GSNVTDVISEYQQYQEATIDDVVYDTEESDDEQTIAEE 448
++ V +Y AT D + + + ++
Sbjct: 422 DTSREIVQQLIDEYHAATRPDYISWGTQEQVDVDGGQK 459
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 757 bits (1956), Expect = 0.0
Identities = 175/453 (38%), Positives = 276/453 (60%), Gaps = 14/453 (3%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQ--LERIQVYYNQAAAGH 58
MRE + + VGQ G QIG+ WE+ EHGI +G D + + ++++ AG
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 HVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMD 118
HVPRAV VDLEP +D +++G Y ++F P+ + G+ A NN+A+GHYT G E++D+++D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDT 178
+R+ ++ C LQGF + HS GGGTGSG +LL+ ++ +Y + FS+ P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238
VVEPYN+IL+ H +EH+D + +DNEA+YDIC R L + PTY++LN L+S +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKN 298
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 299 MMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPP 357
MV CDPRHGKY+ ++RG + K+V+ + + K + +V+W P K + PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 358 K--------GLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSE 409
++ + + NTTAI + R+ +F M+ ++AF+HWY GEGM+E EFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 410 SGSNVTDVISEYQQYQEATIDDVVYDTEESDDE 442
+ ++ + +Y++ +++ + EE +E
Sbjct: 421 AREDMAALEKDYEEVGVDSVEG---EGEEEGEE 450
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 1e-07
Identities = 82/503 (16%), Positives = 145/503 (28%), Gaps = 183/503 (36%)
Query: 12 CGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLER----IQVYYNQAAAGHHVPRAVLVD 67
GN I H + ++D L + I+ Y A R
Sbjct: 97 EGNDI-----------HALA--AKLLQENDTTLVKTKELIKNYI---TARIMAKRPFDKK 140
Query: 68 LEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDV-------IMDVV 120
A+ G+ ++ ++G G GN Y E EL D+ + D++
Sbjct: 141 SNSALFRAVGEGN-AQLVA----IFG--GQGNT---DDYFE--ELRDLYQTYHVLVGDLI 188
Query: 121 RRESENCDCL------------QGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFS 168
+ +E L QG + + PD+ +
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLEN--------------PSNTPDK--DYLL 232
Query: 169 VVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHL 228
+P +S P ++ QL A Y + + L TP +L
Sbjct: 233 SIP---IS----CPLIGVI---QL-------------AHYVVTAKLLGF-TP--GELR-- 264
Query: 229 VSATMSGVTTCLRFPGQLNA----------DLRKLAVNMVPFPRLHFFMPGFAPLTSRNS 278
+ + G T + G + A + + FF+ G R
Sbjct: 265 --SYLKGATGHSQ--GLVTAVAIAETDSWESFFVSVRKAI---TVLFFI-GV-----RCY 311
Query: 279 IQYRSLTVPELTQQMFDAKNM-----MVACDPRHGKYLTVAAIFRGQMSMKEVDEQM--V 331
Y + ++P + N M++ ++ ++V + +
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSI--------------SN-LTQEQVQDYVNKT 356
Query: 332 NAQKNADYYVEWI-----PNNVKTAVCDIPPKGLKMSGTFIGNTTAIQGLFKRISEQFTS 386
N+ A VE I N+ V PP+ L + A GL +Q
Sbjct: 357 NSHLPAGKQVE-ISLVNGAKNL---VVSGPPQSLYGLNLTLRKAKAPSGL-----DQSRI 407
Query: 387 MFR-RKA-----FL------HWYTGEGMDEMEFSESGSNVTDVISEYQQYQEATID--DV 432
F RK FL H S +D+I++ + + D+
Sbjct: 408 PFSERKLKFSNRFLPVASPFH------------SHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 433 ---VYDTEESDDEQTIAEEGGRR 452
VYDT + D + ++ R
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISER 478
Score = 37.3 bits (86), Expect = 0.011
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 21/110 (19%)
Query: 50 YYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEG 109
A+ + DL + + +I P VY + G++ +
Sbjct: 431 LLVPASD------LINKDLVKNNVSF--NAKDIQI--P---VY-DTFDGSDLRVLSGSIS 476
Query: 110 AELVDVIMDVVRRESENCDCLQGFQLTHSI--GGGTGSGMGTLLISKIRD 157
+VD I+ R + F+ TH + G G SG+G L + +D
Sbjct: 477 ERIVDCII----RLPVKWETTTQFKATHILDFGPGGASGLGV-LTHRNKD 521
Score = 36.2 bits (83), Expect = 0.028
Identities = 49/270 (18%), Positives = 82/270 (30%), Gaps = 107/270 (39%)
Query: 13 GNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGT 72
G K ++ I+E +T+ T+ + L L Q + Q A L +E
Sbjct: 1699 GKLKTEKIFKEINEH---STSYTFRSEKGL-LSATQ--FTQPA---------LTLMEKAA 1743
Query: 73 MDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGH----YTEGAELV---DVI-----MDVV 120
+ +KS G I P + + A GH Y A L DV+ ++VV
Sbjct: 1744 FEDLKS--KGLI--PADATF---------A-GHSLGEYA--A-LASLADVMSIESLVEVV 1786
Query: 121 R-RESENCDCLQGFQLTHSI----GGGTGSGMGTLLISKIR----DEYPDRIMNTFSVVP 171
R G + ++ G + GM + ++ E ++
Sbjct: 1787 FYR---------GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG--- 1834
Query: 172 SPKVSDTVVEP--YNAILSVHQLIEHTDETYCI--DNEALYDICHRTLKLPTPTYSDLNH 227
K + +VE YN ++ Y D AL
Sbjct: 1835 --KRTGWLVEIVNYNV----------ENQQYVAAGDLRALDT------------------ 1864
Query: 228 LVSATMSGVTTCLRFPGQLNADLRKLAVNM 257
VT L F D+ +L ++
Sbjct: 1865 --------VTNVLNFIKLQKIDIIELQKSL 1886
Score = 34.3 bits (78), Expect = 0.11
Identities = 46/287 (16%), Positives = 77/287 (26%), Gaps = 128/287 (44%)
Query: 25 SEEHGITTNGTY----NGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGH 80
S E+ + + + Q++ N H+P V++ ++ +G
Sbjct: 327 SLENNEGVP-SPMLSISNLTQEQVQDYVNKTNS-----HLPAGKQVEI------SLVNG- 373
Query: 81 YGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLT-HSI 139
N V +G +S L G LT
Sbjct: 374 ------AKNLVV----SGP----------------------PQS-----LYGLNLTLRKA 396
Query: 140 GGGTGSGMGTLLISKIRDEYPDR---IMNTFSVVPSPKVSDTVVEPYNAIL--SVHQLIE 194
+G L S+I + +R N F +P V P+++ L LI
Sbjct: 397 KAPSG-----LDQSRI--PFSERKLKFSNRF--LP-------VASPFHSHLLVPASDLIN 440
Query: 195 HTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFPGQLNADLRKLA 254
+ + +++P V T G +DLR L+
Sbjct: 441 KDLVKNNVS------FNAKDIQIP----------VYDTFDG------------SDLRVLS 472
Query: 255 VNMVP------------------FPRLHF--FMPG----FAPLTSRN 277
++ F H F PG LT RN
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN 519
Score = 29.6 bits (66), Expect = 2.6
Identities = 31/162 (19%), Positives = 57/162 (35%), Gaps = 35/162 (21%)
Query: 186 ILSVHQLIEHT----DETYCIDNEALYDICHRTLKLPTPTYSDLN------HLVSATMSG 235
LS H +EH ++ I ++ L + ++ L PT ++ + LV +
Sbjct: 10 TLS-HGSLEHVLLVPTASFFIASQ-LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 236 VTTCLRFPGQLNADLRKLAVNMVPFPR-------LHFFMPGFAPLTSRNSIQYRSLTVPE 288
V++ + P ++ + L + + F +H A L N + E
Sbjct: 68 VSSLVE-PSKVGQFDQVLNLCLTEFENCYLEGNDIHALA---AKLLQENDT--TLVKTKE 121
Query: 289 LTQQMFDAKNMM-VACDPRHGKYL---------TVAAIFRGQ 320
L + A+ M D + L + AIF GQ
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 4e-07
Identities = 55/382 (14%), Positives = 105/382 (27%), Gaps = 122/382 (31%)
Query: 21 WEVISEEHGITTNGTYNGDSDLQLERIQVYYN--QAAAGHHVPRAVLVDLEPGTMDAIKS 78
I E + + + +E+ YN Q A ++V R L+P ++
Sbjct: 95 MSPIKTEQRQPS-----MMTRMYIEQRDRLYNDNQVFAKYNVSR-----LQP--YLKLRQ 142
Query: 79 GHYGKIFRPDNFV--YGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLT 136
RP V G G+G W + +DV S C F++
Sbjct: 143 ALLE--LRPAKNVLIDGVLGSGKTW----------VA---LDVCL--SYKVQCKMDFKI- 184
Query: 137 HSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEH- 195
+ + T+L ++ P + N L +H +
Sbjct: 185 FWLNLKNCNSPETVLE----------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 196 ----TDETYC-----IDN-------EALYDI-CHRTLKLPTPTYSDLNHLVSATMSGVTT 238
+ Y + N A +++ C + L +TT
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSC-KIL--------------------LTT 272
Query: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRN-SIQYRSLTVPELTQQMFDAK 297
RF D L+ L P ++ ++Y +L ++
Sbjct: 273 --RFKQ--VTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE----- 321
Query: 298 NMMVACDPRHGKYLTVAAIFR------------GQMSMKEVDEQMVNAQKNAD---YYVE 342
++ +PR +A R + + E +N + A+ +
Sbjct: 322 --VLTTNPRRLS--IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 343 W--IPNNVKTAVCDIPPKGLKM 362
P + IP L +
Sbjct: 378 LSVFPPSAH-----IPTILLSL 394
Score = 28.7 bits (63), Expect = 5.4
Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 49/147 (33%)
Query: 28 HGITTNGTYNGDSDLQLERIQV-YYNQAAA-------------------GHHVPRAVLVD 67
I +++ L R V +YN GHH L +
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-----LKN 483
Query: 68 LEPGTMDAIKSGHY-------GKIFRPDNFVYGQSGAGNN------WAKGHYTEG----A 110
+E + + KI R D+ + SG+ N + K + +
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 111 ELVDVIMDVVRRESENC------DCLQ 131
LV+ I+D + + EN D L+
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLR 569
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 50.8 bits (121), Expect = 4e-07
Identities = 35/241 (14%), Positives = 70/241 (29%), Gaps = 53/241 (21%)
Query: 9 VGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDL 68
+GQ G I + + + + N + DL + H
Sbjct: 12 IGQGGGNIVDTLLGICGDYNALFINTSKK---DLD------------SLKHAKHTYH--- 53
Query: 69 EPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCD 128
I G G K I+ + + +CD
Sbjct: 54 -------IPYAE---------------GCGKERKKA-VGYAQTYYKQIIAQIMEKFSSCD 90
Query: 129 CLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILS 188
++ GG GSG+ ++ + YP++ V+P ++ + E NAI
Sbjct: 91 ---IVIFVATMAGGAGSGITPPILGLAKQMYPNKHFGFVGVLPKA--TEDIDEHMNAIAC 145
Query: 189 VHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFPGQLNA 248
+ ++ T+E + ++Y + SD+N + + +
Sbjct: 146 WNDIMRSTNE---GKDISIYLL----DNNKREKESDINKEFATLFNDFMNMSESHAEGVV 198
Query: 249 D 249
D
Sbjct: 199 D 199
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid
segregation; HET: GDP; 1.90A {Bacillus cereus} PDB:
4ei8_A 4ei9_A*
Length = 389
Score = 41.6 bits (97), Expect = 4e-04
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 18/163 (11%)
Query: 96 GAGNNWAKGHYTEGAEL-VDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISK 154
GA N G E I + V++E E+ D + + +T +GGGTG+G I
Sbjct: 82 GAARNPQVGE--EAFVKHETKIFEAVKQEFEDRDFI--W-ITCGLGGGTGTGALLKAIEM 136
Query: 155 IRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYC---IDNEALYDIC 211
+ + N ++ P+ ++ + NA + + + + IDN LY
Sbjct: 137 LYEHD----YNFGLLLTLPRDAEALKVLENATSRIRSIAMNQEAFGSIVLIDNAKLYRKF 192
Query: 212 HRTLKLPTPT--YSDLNHLVS---ATMSGVTTCLRFPGQLNAD 249
S N ++ ++ VT+ + D
Sbjct: 193 EEENPSALANEYTSYSNKYIADALHEINLVTSSFTPFSDTHFD 235
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.18
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 250 LRKLAVNMVPFPRLHFFMPGFAP-LTSRNSIQ 280
L+KL L + AP L + +++
Sbjct: 22 LKKLQ------ASLKLYADDSAPALAIKATME 47
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 32.2 bits (72), Expect = 0.40
Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 111 ELVDVIMDVVRRESENCDCLQG---FQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTF 167
+D + + R+ N + F + GGG G+G G+L++ IR+++ ++
Sbjct: 126 GYLDKLAQELGRKFTNEEGEVIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSML 185
Query: 168 SVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALY 208
+PS + NA++ + ++ E E + +
Sbjct: 186 ISLPSGDPDEI----NNALVLLSEIDEFMREQDRLFGNSDI 222
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET:
GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Length = 315
Score = 31.0 bits (69), Expect = 0.80
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 8/113 (7%)
Query: 93 GQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLI 152
G GAG N LV + + D + +S+GGG+GS +G L+
Sbjct: 52 GTRGAGGNRKVI-----LPLVRPQIPALMDTIPEADFYI---VCYSLGGGSGSVLGPLIT 103
Query: 153 SKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNE 205
++ D + + S ++ + ++ + N
Sbjct: 104 GQLADRKASFVSFVVGAMESTDNLGNDIDTMKTLEAIAVNKHLPIVVNYVPNT 156
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 29.5 bits (66), Expect = 2.1
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 345 PNNVKTAVCDI----PPKGLKMSGTFIG--NTTAIQGLFKRISEQFTSMFRRKAFL 394
P+NV V K + + F+G + A + +F+ + ++F FR L
Sbjct: 38 PDNVGAYVDGTIYTRGGKEKQSTAIFVGGGDMAAGERVFEAVKKRFFGPFRVSCML 93
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function;
HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Length = 224
Score = 29.4 bits (66), Expect = 2.2
Identities = 11/68 (16%), Positives = 26/68 (38%)
Query: 202 IDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFP 261
N + +C TP ++ + A G++ FP + + ++ + + P+
Sbjct: 97 GLNPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEASGGVKMIKALLGPYA 156
Query: 262 RLHFFMPG 269
+L G
Sbjct: 157 QLQIMPTG 164
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1
PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Length = 214
Score = 29.0 bits (65), Expect = 2.7
Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 12/119 (10%)
Query: 151 LISKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDI 210
I I E P+ I+ +V+ ++++ +S E L
Sbjct: 57 AIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGL------------TEPLLKA 104
Query: 211 CHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPG 269
P S ++ L+ G+ FP + N ++ L PF ++ F G
Sbjct: 105 ATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPTG 163
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four
helix bundle, hydrolase/hydrolase inhibitor complex;
1.90A {Actinidia chinensis}
Length = 153
Score = 28.4 bits (63), Expect = 2.9
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 12/68 (17%)
Query: 201 CID--NEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLR-FPG---------QLNA 248
C + +A+ + L + Y+ LN SA G TC F G Q +
Sbjct: 75 CSENYADAIDSLGQAKQFLTSGDYNSLNIYASAAFDGAGTCEDSFEGPPNIPTQLHQADL 134
Query: 249 DLRKLAVN 256
L L
Sbjct: 135 KLEDLCDI 142
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
1i6v_D* 2gho_D
Length = 1265
Score = 29.2 bits (66), Expect = 3.7
Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 12/87 (13%)
Query: 112 LVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVP 171
LVDV ++V RE +C + + + S I R+
Sbjct: 839 LVDVAHEIVVRE-ADCGTTKYISVPLFQMDEVTRTLRLRKRSDIESGLYGRV-------- 889
Query: 172 SPKVSDTVVEPYNAILSVHQLIEHTDE 198
++ V + L
Sbjct: 890 ---LAREVEALGRRLEEGRYLSLEDVH 913
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 28.6 bits (65), Expect = 4.4
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 170 VPSPKVSDTVVEPYNAILSVHQLIE-HTDETYCI 202
VP +T+ YN + SV E D+ C+
Sbjct: 171 VPEGVAKNTITVAYNDLESVKYAFEQFGDDIACV 204
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 28.6 bits (65), Expect = 4.5
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 170 VPSPKVSDTVVEPYNAILSVHQLIE-HTDETYCI 202
VP + + P+N + ++ + ++ E I
Sbjct: 173 VPQSIAQEVITVPFNNVETLKEALDKWGHEVAAI 206
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 28.6 bits (65), Expect = 4.5
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 170 VPSPKVSDTVVEPYNAILSVHQLIE-HTDETYCI 202
VP ++T+ PYN + +V L + E +
Sbjct: 170 VPKKTTANTLTTPYNDLEAVKALFAENPGEIAGV 203
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 28.6 bits (65), Expect = 4.5
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 170 VPSPKVSDTVVEPYNAILSVHQLIE-HTDETYCI 202
VP+ T+ YN + SV Q E + E CI
Sbjct: 171 VPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACI 204
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 28.3 bits (64), Expect = 5.0
Identities = 6/43 (13%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 166 TFSVVPSPKV-----SDTVVEPYNAILSVHQLIE-HTDETYCI 202
P+P V ++T++ + I + ++ H +
Sbjct: 164 FDGQ-PAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAF 205
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 28.2 bits (64), Expect = 5.4
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 170 VPSPKVSDTVVEPYNAILSVHQLIE-HTDETYCI 202
VP T+V PYN + ++ ++ + D +
Sbjct: 174 VPEAVARLTLVTPYNDVEALERVFAEYGDRIAGV 207
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 28.2 bits (64), Expect = 6.4
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 170 VPSPKVSDTVVEPYNAILSVHQLIE-HTDETYCI 202
VP T+V YN + ++++ +E I
Sbjct: 170 VPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAI 203
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase;
1.64A {Vibrionales bacterium swat-3}
Length = 232
Score = 27.9 bits (62), Expect = 6.7
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 204 NEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 263
N C P ++ + + +A G+TT FP + + + + + P+ +
Sbjct: 116 NPNTVRACQEIGIDIVPGVNNPSTVEAALEMGLTTLKFFPAEASGGISMVKSLVGPYGDI 175
Query: 264 HFFMP 268
MP
Sbjct: 176 R-LMP 179
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_D*
Length = 1407
Score = 28.4 bits (64), Expect = 6.7
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 112 LVDVIMDVVRRESENCDCLQGFQLTHSIGGG 142
LVDV D+V E ++C +G +T I GG
Sbjct: 800 LVDVAQDLVVTE-DDCGTHEGIMMTPVIEGG 829
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 26.6 bits (59), Expect = 7.2
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 138 SIGGGTGSGMGTLLISKI 155
++ GG S +G +++S +
Sbjct: 33 ALEGGVDSPVGKVVVSAV 50
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, MGA family; 2.31A
{Enterococcus faecalis}
Length = 485
Score = 28.0 bits (62), Expect = 7.3
Identities = 6/63 (9%), Positives = 17/63 (26%), Gaps = 2/63 (3%)
Query: 142 GTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYC 201
L ++ R+ + ++S + + I+S L +
Sbjct: 406 QGEPAWKAFLQQELAAYLGTRV--KLQAIEYVELSQLTLNEADIIISNFPLDHLDLPVFY 463
Query: 202 IDN 204
+
Sbjct: 464 LSL 466
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 7.3
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 139 IGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQL 192
+G +GSGMG + S +R + DR P +D + E + +S
Sbjct: 1044 VGNCSGSGMGGV--SALRGMFKDRFK------DEPVQNDILQESFINTMSAWVN 1089
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 28.0 bits (63), Expect = 7.7
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 169 VVPSPKVSDTVVEPYNAILSVHQLIE-HTDETYCI 202
P+ V+ YN + L++ H + I
Sbjct: 203 HAPTNAPYHVVLGVYNDVEGTADLLKRHGHDCAAI 237
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,173,070
Number of extensions: 437956
Number of successful extensions: 855
Number of sequences better than 10.0: 1
Number of HSP's gapped: 829
Number of HSP's successfully gapped: 37
Length of query: 454
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 357
Effective length of database: 3,993,456
Effective search space: 1425663792
Effective search space used: 1425663792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.0 bits)