RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17702
(454 letters)
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 243
Score = 389 bits (1001), Expect = e-136
Identities = 207/243 (85%), Positives = 229/243 (94%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHV 60
MREIVH+Q GQCGNQIG+KFWEVIS+EHGI G+Y+GDSDLQLERI VYYN+AA +V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 61 PRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVV 120
PRA+LVDLEPGTMD+++SG +G+IFRPDNFV+GQSGAGNNWAKGHYTEGAELVD ++DVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVV 180
R+ESE+CDCLQGFQLTHS+GGGTGSGMGTLLISKIR+EYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 181 EPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240
EPYNA LSVHQL+E+TDETYCIDNEALYDIC RTLKL TPTY DLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFP 243
RFP
Sbjct: 241 RFP 243
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 245
Score = 358 bits (921), Expect = e-124
Identities = 106/244 (43%), Positives = 160/244 (65%), Gaps = 2/244 (0%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQL--ERIQVYYNQAAAGH 58
MRE + + VGQ G QIG+ WE+ EHGI +G D + + ++++ AG
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 HVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMD 118
HVPRAV VDLEP +D +++G Y ++F P+ + G+ A NN+A+GHYT G E++D+++D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDT 178
+R+ ++ C LQGF + HS GGGTGSG +LL+ ++ +Y + FS+ P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTT 238
VVEPYN+IL+ H +EH+D + +DNEA+YDIC R L + PTY++LN L+ +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 239 CLRF 242
LRF
Sbjct: 241 SLRF 244
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 244
Score = 338 bits (867), Expect = e-116
Identities = 86/245 (35%), Positives = 142/245 (57%), Gaps = 4/245 (1%)
Query: 1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYN---QAAAG 57
+ + + +GQ GNQI + FW+ + EHGI +++ ++++G
Sbjct: 1 VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSG 60
Query: 58 HHVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIM 117
+VPRA++VDLEP +D +K+ G +F P N + GAG N+A G+ G E++ +M
Sbjct: 61 SYVPRAIMVDLEPSVIDNVKAT-SGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVM 119
Query: 118 DVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSD 177
+ E + CD + G + H+IGGGTGSG G LLI ++++Y + + + +V+PSP+VS
Sbjct: 120 SRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSS 179
Query: 178 TVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVT 237
V EPYN + +++ L D DNEAL+D+ HR + +PT DLN L++ ++G+T
Sbjct: 180 VVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGIT 239
Query: 238 TCLRF 242
+RF
Sbjct: 240 ASMRF 244
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 184
Score = 276 bits (708), Expect = 6e-93
Identities = 158/184 (85%), Positives = 174/184 (94%), Gaps = 1/184 (0%)
Query: 244 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVAC 303
GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSR S QYR+LTVPELTQQMFDAKNMM AC
Sbjct: 1 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAAC 60
Query: 304 DPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKGLKM 362
DPRHG+YLTVAA+FRG+MSMKEVDEQM+N Q KN+ Y+VEWIPNNVKTAVCDIPP+GLKM
Sbjct: 61 DPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKM 120
Query: 363 SGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVISEYQ 422
S TFIGN+TAIQ LFKRISEQFT+MFRRKAFLHWYTGEGMDEMEF+E+ SN+ D++SEYQ
Sbjct: 121 SATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 180
Query: 423 QYQE 426
QYQ+
Sbjct: 181 QYQD 184
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 195
Score = 265 bits (678), Expect = 3e-88
Identities = 65/195 (33%), Positives = 107/195 (54%), Gaps = 9/195 (4%)
Query: 244 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVAC 303
G LN DL + N+VP+PR HF + +AP+ S + L+V E+T F+ N MV C
Sbjct: 1 GALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC 60
Query: 304 DPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPP----- 357
DPRHGKY+ ++RG + K+V+ + + K +V+W P K + PP
Sbjct: 61 DPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPG 120
Query: 358 ---KGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNV 414
++ + + NTTAI + R+ +F M+ ++AF+HWY GEGM+E EFSE+ ++
Sbjct: 121 GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 180
Query: 415 TDVISEYQQYQEATI 429
+ +Y++ ++
Sbjct: 181 AALEKDYEEVGVDSV 195
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 180
Score = 257 bits (657), Expect = 3e-85
Identities = 56/178 (31%), Positives = 92/178 (51%)
Query: 249 DLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHG 308
LR+L N+VP P LHF M FAPLT + ++ L + E+ + +FD ++ AC P G
Sbjct: 3 SLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGSVFAACSPMEG 62
Query: 309 KYLTVAAIFRGQMSMKEVDEQMVNAQKNADYYVEWIPNNVKTAVCDIPPKGLKMSGTFIG 368
++L+ A ++RG M K + + + A + WIP K + P + S +
Sbjct: 63 RFLSTAVLYRGIMEDKPLADAALAAMREKLPLTYWIPTAFKIGYVEQPGISHRKSMVLLA 122
Query: 369 NTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVISEYQQYQE 426
N T I + RI F +++RKAF +WY EGM E + + ++ +++ YQ +E
Sbjct: 123 NNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASAQELVQSYQVAEE 180
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 39.5 bits (92), Expect = 3e-04
Identities = 29/146 (19%), Positives = 57/146 (39%), Gaps = 8/146 (5%)
Query: 102 AKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPD 161
A + G + + + E D +T +GGGTG+G ++ ++
Sbjct: 61 AGANPEVGRQAALEDRERISEVLEGADM---VFITTGMGGGTGTGAAPIIAEVAKEMG-- 115
Query: 162 RIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPT 221
+ T +VV P + A + L E D I NE L I + L
Sbjct: 116 --ILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLA-A 172
Query: 222 YSDLNHLVSATMSGVTTCLRFPGQLN 247
++ + +++ + G++ ++ PG +N
Sbjct: 173 FAKADDVLAGAVRGISDIIKRPGMIN 198
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 35.7 bits (82), Expect = 0.006
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 102 AKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPD 161
A G+ G E + ++ ++ D +T +GGGTG+G ++++I +
Sbjct: 75 AGGNPKIGEEAAKESAEEIKAAIQDSDM---VFITCGLGGGTGTG-SAPVVAEISKKIG- 129
Query: 162 RIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRT 214
T +VV P V + V NA+ + +L +HTD I NE L++I
Sbjct: 130 --ALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNM 180
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 32.9 bits (75), Expect = 0.043
Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 8/146 (5%)
Query: 102 AKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPD 161
A G + + D + D +T GGGTG+G ++ S R
Sbjct: 61 AGADPEVGRKAAEDAKDEIEELLRGADM---VFVTAGEGGGTGTGGAPVVASIARKLG-- 115
Query: 162 RIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPT 221
T VV P + A + L E D I N+ L + + L
Sbjct: 116 --ALTVGVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLLQMGDAAVSL-MDA 172
Query: 222 YSDLNHLVSATMSGVTTCLRFPGQLN 247
+ + ++ + G+T + PG +N
Sbjct: 173 FRSADEVLLNGVQGITDLITTPGLIN 198
>d1luaa2 c.58.1.4 (A:2-97) Methylene-tetrahydromethanopterin
dehydrogenase {Methylobacterium extorquens [TaxId: 408]}
Length = 96
Score = 29.2 bits (66), Expect = 0.30
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 345 PNNVKTAVCDI----PPKGLKMSGTFIG--NTTAIQGLFKRISEQFTSMFRRKAFL 394
P+NV V K + + F+G + A + +F+ + ++F FR L
Sbjct: 38 PDNVGAYVDGTIYTRGGKEKQSTAIFVGGGDMAAGERVFEAVKKRFFGPFRVSCML 93
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 194
Score = 28.8 bits (64), Expect = 0.93
Identities = 31/165 (18%), Positives = 51/165 (30%), Gaps = 39/165 (23%)
Query: 91 VYGQSGAGNNWAKGHYTEGAELVDVI---------------------------------M 117
V G GAGNN G V+ +
Sbjct: 5 VIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNADVKIQIGENITRGLGAGGRP 64
Query: 118 DVVRRESENC-----DCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPS 172
++ + + + LQ + I G G G GT I + + T ++V +
Sbjct: 65 EIGEQAALESEEKIREVLQDTHMVF-ITAGFGGGTGTGASPVIAKIAKEMGILTVAIVTT 123
Query: 173 PKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKL 217
P + AI + +L +H D I N L + R +K+
Sbjct: 124 PFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKI 168
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId:
303]}
Length = 216
Score = 27.6 bits (61), Expect = 2.7
Identities = 10/66 (15%), Positives = 22/66 (33%)
Query: 204 NEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 263
E + + + P S + ++ G FP +++ + + PF +
Sbjct: 99 TEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRFKLFPAEISGGVAAIKAFGGPFGDI 158
Query: 264 HFFMPG 269
F G
Sbjct: 159 RFCPTG 164
>d2mev3_ b.121.4.1 (3:) Mengo encephalomyocarditis virus coat
proteins {Mengovirus [TaxId: 12107]}
Length = 231
Score = 27.1 bits (60), Expect = 3.7
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 321 MSMKEVDEQMVNAQKNADYYVEWIPNNVKT---AVCDIPPKGLKMSGTFIG 368
+ + ++ + N NA Y+E VKT AV + ++ TF+
Sbjct: 45 LEIAQIPTFIGNKVPNAVPYIEASNTAVKTQPLAVYQVTLSCSCLANTFLA 95
>d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger
[TaxId: 5061]}
Length = 261
Score = 27.1 bits (59), Expect = 4.0
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 85 FRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTG 144
+ F G+Y + D + +V++++ HS+G
Sbjct: 80 YTLTPFDTLPQCNDCEVHGGYYIGWISVQDQVESLVKQQASQYPDYALTVTGHSLGA--- 136
Query: 145 SGMGTLLISKIRDEYPDRIMNTFS 168
M L +++ Y + + TF
Sbjct: 137 -SMAALTAAQLSATYDNVRLYTFG 159
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 26.6 bits (58), Expect = 4.5
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 201 CIDN--EALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTC---LRFPGQLNADLRKLAV 255
C+D A+ ++ L + +N VSA + G TC ++ +++ + +
Sbjct: 71 CVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLRSVDSSVVNNSK 130
Query: 256 NM 257
+
Sbjct: 131 TI 132
>d3es6b1 b.1.18.23 (B:1-118) Prolactin-inducible protein, PIP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 25.3 bits (55), Expect = 9.3
Identities = 5/78 (6%), Positives = 17/78 (21%), Gaps = 9/78 (11%)
Query: 114 DVIMDVVRRESENCDCLQGFQLTHSIGGG---------TGSGMGTLLISKIRDEYPDRIM 164
+++ S ++ T + + +
Sbjct: 37 CMVVKTYLISSIPLQGAFNYKYTACLCDDNPKTFYWDFYTNRTVQIAAVVDVIRELGICP 96
Query: 165 NTFSVVPSPKVSDTVVEP 182
+ +V+P +E
Sbjct: 97 DDAAVIPIKNNRFYTIEI 114
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 26.4 bits (57), Expect = 9.8
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 251 RKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELT 290
+L M+P + PLTS I + L P+LT
Sbjct: 477 EELPTYMIP--SYFIQLDKM-PLTSNGKIDRKQLPEPDLT 513
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,728,083
Number of extensions: 79776
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 20
Length of query: 454
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 366
Effective length of database: 1,199,356
Effective search space: 438964296
Effective search space used: 438964296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)