Query psy17703
Match_columns 720
No_of_seqs 541 out of 3467
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 20:51:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0478|consensus 100.0 1.8E-96 4E-101 802.8 36.5 460 178-637 154-770 (804)
2 COG1241 MCM2 Predicted ATPase 100.0 1.8E-93 3.9E-98 807.2 44.2 425 1-639 189-640 (682)
3 KOG0482|consensus 100.0 7.3E-93 1.6E-97 749.2 21.0 448 1-676 244-709 (721)
4 KOG0481|consensus 100.0 1.1E-88 2.4E-93 718.2 34.9 436 1-654 228-694 (729)
5 KOG0480|consensus 100.0 6.4E-88 1.4E-92 730.6 32.9 415 186-601 53-653 (764)
6 PTZ00111 DNA replication licen 100.0 3.9E-86 8.5E-91 761.9 49.3 458 1-655 319-871 (915)
7 KOG0479|consensus 100.0 1.1E-87 2.4E-92 719.3 32.5 380 2-597 207-648 (818)
8 KOG0477|consensus 100.0 4.7E-83 1E-87 688.1 23.3 383 1-596 351-762 (854)
9 smart00350 MCM minichromosome 100.0 7.6E-72 1.6E-76 633.4 41.3 389 1-595 97-508 (509)
10 PF00493 MCM: MCM2/3/5 family 100.0 3.6E-68 7.7E-73 572.3 10.3 253 344-596 56-331 (331)
11 KOG0482|consensus 100.0 1.7E-47 3.7E-52 405.2 11.8 406 179-720 34-498 (721)
12 KOG0481|consensus 100.0 2.7E-46 5.9E-51 396.4 12.8 393 178-719 47-486 (729)
13 COG1241 MCM2 Predicted ATPase 100.0 5.1E-46 1.1E-50 421.4 15.5 407 189-720 29-442 (682)
14 KOG0477|consensus 100.0 1.8E-43 3.8E-48 382.3 7.4 398 176-720 179-605 (854)
15 PTZ00111 DNA replication licen 100.0 1E-39 2.2E-44 377.6 26.6 172 176-347 121-320 (915)
16 KOG0478|consensus 100.0 7.4E-39 1.6E-43 351.2 5.5 175 1-193 322-498 (804)
17 KOG0479|consensus 100.0 1.7E-35 3.6E-40 318.5 18.7 404 177-720 29-457 (818)
18 KOG0480|consensus 99.9 1.4E-28 3E-33 268.8 8.4 174 1-192 217-413 (764)
19 smart00350 MCM minichromosome 99.9 2.4E-27 5.2E-32 269.7 16.7 93 254-346 3-97 (509)
20 TIGR00368 Mg chelatase-related 99.9 2.5E-24 5.4E-29 242.0 18.7 236 344-590 210-498 (499)
21 COG0606 Predicted ATPase with 99.9 2.5E-25 5.4E-30 239.9 9.6 260 331-590 175-484 (490)
22 PRK09862 putative ATP-dependen 99.9 3E-24 6.6E-29 240.1 18.4 238 344-591 209-492 (506)
23 TIGR02031 BchD-ChlD magnesium 99.9 5.1E-23 1.1E-27 237.1 22.4 227 346-591 17-258 (589)
24 PRK13407 bchI magnesium chelat 99.9 2.6E-22 5.7E-27 214.9 23.2 227 343-590 27-305 (334)
25 TIGR02442 Cob-chelat-sub cobal 99.9 3.5E-22 7.5E-27 232.7 22.7 227 344-591 24-304 (633)
26 TIGR02030 BchI-ChlI magnesium 99.9 9.1E-22 2E-26 211.2 22.9 227 344-591 24-309 (337)
27 PF01078 Mg_chelatase: Magnesi 99.9 3.2E-23 6.9E-28 204.8 8.5 153 344-496 21-203 (206)
28 CHL00081 chlI Mg-protoporyphyr 99.9 2.7E-21 5.9E-26 207.4 21.9 225 346-591 39-322 (350)
29 COG1239 ChlI Mg-chelatase subu 99.8 3.6E-20 7.7E-25 197.8 19.3 225 346-591 39-322 (423)
30 PRK13406 bchD magnesium chelat 99.8 1.2E-19 2.6E-24 207.4 20.9 218 347-591 27-250 (584)
31 PRK13531 regulatory ATPase Rav 99.8 4.8E-18 1E-22 187.1 21.1 229 344-593 38-286 (498)
32 COG0714 MoxR-like ATPases [Gen 99.8 2.7E-17 5.7E-22 178.1 20.7 235 344-590 42-295 (329)
33 PF07726 AAA_3: ATPase family 99.8 1.9E-18 4.1E-23 157.4 9.6 125 347-487 1-130 (131)
34 TIGR01650 PD_CobS cobaltochela 99.7 1.9E-16 4E-21 167.6 21.0 211 345-570 64-283 (327)
35 TIGR00764 lon_rel lon-related 99.7 5E-16 1.1E-20 179.6 20.4 175 400-597 208-397 (608)
36 TIGR02640 gas_vesic_GvpN gas v 99.7 4.3E-16 9.3E-21 163.2 17.1 212 344-588 20-254 (262)
37 COG2255 RuvB Holliday junction 99.7 8.6E-15 1.9E-19 148.4 21.3 192 347-591 54-251 (332)
38 PF05496 RuvB_N: Holliday junc 99.7 3.1E-16 6.8E-21 156.2 10.5 172 346-570 51-228 (233)
39 TIGR02902 spore_lonB ATP-depen 99.6 5.9E-14 1.3E-18 160.7 18.7 209 342-590 83-331 (531)
40 PF00493 MCM: MCM2/3/5 family 99.6 1.3E-15 2.8E-20 164.5 4.4 67 654-720 114-180 (331)
41 COG3604 FhlA Transcriptional r 99.5 2.6E-14 5.7E-19 154.8 12.4 210 344-584 245-465 (550)
42 PF07728 AAA_5: AAA domain (dy 99.5 1.2E-14 2.5E-19 137.3 8.2 129 347-486 1-139 (139)
43 PHA02244 ATPase-like protein 99.5 1E-13 2.2E-18 148.3 15.3 143 344-496 118-262 (383)
44 COG3829 RocR Transcriptional r 99.5 6.4E-14 1.4E-18 153.9 12.9 210 343-585 266-491 (560)
45 COG2204 AtoC Response regulato 99.5 1.4E-13 3.1E-18 151.5 13.5 211 343-586 162-386 (464)
46 PRK13765 ATP-dependent proteas 99.5 5.6E-13 1.2E-17 153.9 18.6 166 400-589 217-398 (637)
47 PRK00080 ruvB Holliday junctio 99.4 1.9E-12 4.1E-17 140.3 17.1 191 346-590 52-249 (328)
48 TIGR02974 phageshock_pspF psp 99.4 8.8E-13 1.9E-17 142.4 14.4 200 344-570 21-232 (329)
49 PRK05342 clpX ATP-dependent pr 99.4 5.6E-13 1.2E-17 147.3 10.6 194 345-539 108-356 (412)
50 TIGR00382 clpX endopeptidase C 99.4 6.1E-13 1.3E-17 146.2 10.2 194 345-539 116-362 (413)
51 TIGR00635 ruvB Holliday juncti 99.4 7E-12 1.5E-16 134.4 17.4 191 346-590 31-228 (305)
52 KOG0734|consensus 99.4 1E-12 2.3E-17 142.4 10.9 263 347-637 339-694 (752)
53 PF14551 MCM_N: MCM N-terminal 99.4 7.3E-13 1.6E-17 122.0 7.7 97 176-272 16-121 (121)
54 COG0466 Lon ATP-dependent Lon 99.4 1.4E-12 3E-17 146.8 9.7 170 346-541 351-538 (782)
55 COG1221 PspF Transcriptional r 99.4 4.2E-12 9E-17 137.7 12.7 204 341-574 97-312 (403)
56 TIGR02881 spore_V_K stage V sp 99.4 7.7E-12 1.7E-16 131.1 14.2 189 344-574 41-241 (261)
57 PRK11608 pspF phage shock prot 99.3 9.2E-12 2E-16 134.5 14.4 200 344-570 28-239 (326)
58 TIGR02880 cbbX_cfxQ probable R 99.3 5.1E-12 1.1E-16 133.8 11.9 189 345-574 58-256 (284)
59 CHL00181 cbbX CbbX; Provisiona 99.3 5.5E-12 1.2E-16 133.6 11.9 181 344-568 58-251 (287)
60 PRK15424 propionate catabolism 99.3 2.2E-11 4.8E-16 138.6 16.5 222 343-584 240-478 (538)
61 COG1222 RPT1 ATP-dependent 26S 99.3 8.8E-12 1.9E-16 130.5 12.1 186 346-589 186-390 (406)
62 TIGR02329 propionate_PrpR prop 99.3 1.9E-11 4.2E-16 139.2 15.5 224 344-587 234-466 (526)
63 COG1223 Predicted ATPase (AAA+ 99.3 4.7E-12 1E-16 126.8 9.0 188 345-589 151-353 (368)
64 COG2256 MGS1 ATPase related to 99.3 1.2E-11 2.5E-16 131.6 12.1 166 346-571 49-220 (436)
65 PRK05022 anaerobic nitric oxid 99.3 3.1E-11 6.7E-16 138.3 15.4 202 344-572 209-421 (509)
66 PRK10787 DNA-binding ATP-depen 99.3 2E-11 4.3E-16 145.1 13.9 214 346-589 350-580 (784)
67 TIGR01817 nifA Nif-specific re 99.3 2.2E-11 4.9E-16 140.4 13.8 212 344-585 218-439 (534)
68 PF00158 Sigma54_activat: Sigm 99.3 4E-12 8.7E-17 124.0 5.4 136 344-487 21-163 (168)
69 PLN03025 replication factor C 99.3 3.2E-11 7E-16 130.1 12.9 181 346-587 35-219 (319)
70 PRK11388 DNA-binding transcrip 99.3 5.3E-11 1.2E-15 140.3 15.7 211 344-588 347-568 (638)
71 TIGR02639 ClpA ATP-dependent C 99.2 5E-10 1.1E-14 133.6 21.2 138 344-505 202-355 (731)
72 PRK11034 clpA ATP-dependent Cl 99.2 8.4E-11 1.8E-15 138.8 13.6 180 347-539 490-693 (758)
73 PRK03992 proteasome-activating 99.2 1.2E-10 2.6E-15 128.8 12.8 194 345-594 165-375 (389)
74 TIGR02915 PEP_resp_reg putativ 99.2 2.2E-10 4.8E-15 129.3 15.2 212 344-585 161-383 (445)
75 PRK10820 DNA-binding transcrip 99.2 1.5E-10 3.2E-15 132.8 13.8 211 344-584 226-447 (520)
76 PRK10923 glnG nitrogen regulat 99.2 2.7E-10 5.9E-15 129.5 15.0 215 343-587 159-384 (469)
77 PRK11034 clpA ATP-dependent Cl 99.2 2.4E-09 5.2E-14 126.6 22.6 174 343-540 205-406 (758)
78 PRK15429 formate hydrogenlyase 99.1 3.6E-10 7.8E-15 134.2 15.2 199 344-570 398-608 (686)
79 CHL00195 ycf46 Ycf46; Provisio 99.1 4.3E-10 9.3E-15 126.8 14.3 184 346-589 260-461 (489)
80 TIGR00763 lon ATP-dependent pr 99.1 1.8E-10 3.9E-15 138.1 12.0 171 345-541 347-535 (775)
81 TIGR02903 spore_lon_C ATP-depe 99.1 4.4E-10 9.5E-15 130.9 14.5 207 344-591 174-430 (615)
82 PRK11361 acetoacetate metaboli 99.1 7.7E-10 1.7E-14 125.4 15.5 215 344-587 165-389 (457)
83 KOG2004|consensus 99.1 1.4E-10 3.1E-15 130.0 9.1 169 345-542 438-627 (906)
84 PRK15115 response regulator Gl 99.1 1.1E-09 2.3E-14 123.8 16.0 215 344-587 156-380 (444)
85 KOG2028|consensus 99.1 1.8E-10 3.9E-15 120.3 8.8 193 347-589 164-366 (554)
86 PF07724 AAA_2: AAA domain (Cd 99.1 4.7E-11 1E-15 116.9 4.2 138 346-489 4-171 (171)
87 PTZ00454 26S protease regulato 99.1 4.2E-10 9E-15 124.3 11.9 191 345-591 179-386 (398)
88 PRK07003 DNA polymerase III su 99.1 2.9E-09 6.3E-14 122.8 18.5 184 348-589 41-242 (830)
89 TIGR02639 ClpA ATP-dependent C 99.1 3.6E-10 7.8E-15 134.8 11.5 184 347-539 486-689 (731)
90 COG1219 ClpX ATP-dependent pro 99.1 3.3E-10 7.1E-15 116.8 9.4 198 344-542 96-348 (408)
91 TIGR01242 26Sp45 26S proteasom 99.1 4.3E-10 9.4E-15 123.6 11.2 188 346-589 157-361 (364)
92 PRK14962 DNA polymerase III su 99.1 2E-09 4.3E-14 121.4 16.4 185 347-589 38-240 (472)
93 TIGR01818 ntrC nitrogen regula 99.1 1.4E-09 2.9E-14 123.6 14.8 215 344-588 156-381 (463)
94 KOG0989|consensus 99.1 2.1E-09 4.5E-14 110.8 14.1 152 344-538 56-218 (346)
95 PTZ00361 26 proteosome regulat 99.1 6.7E-10 1.5E-14 123.5 11.3 192 346-592 218-425 (438)
96 CHL00176 ftsH cell division pr 99.1 1.2E-09 2.6E-14 127.0 13.6 191 345-590 216-422 (638)
97 COG3284 AcoR Transcriptional a 99.1 5.6E-10 1.2E-14 125.3 10.4 208 344-587 335-553 (606)
98 PRK13342 recombination factor 99.0 1.9E-09 4.2E-14 120.4 14.5 177 346-589 37-217 (413)
99 TIGR03345 VI_ClpV1 type VI sec 99.0 1E-09 2.2E-14 132.0 12.1 202 347-565 598-824 (852)
100 TIGR01241 FtsH_fam ATP-depende 99.0 1.6E-09 3.6E-14 123.8 13.1 187 346-590 89-294 (495)
101 CHL00095 clpC Clp protease ATP 99.0 2.3E-09 5E-14 129.4 14.6 187 347-539 541-759 (821)
102 KOG0738|consensus 99.0 7.3E-10 1.6E-14 116.9 8.8 126 346-506 246-393 (491)
103 PRK14949 DNA polymerase III su 99.0 6.4E-09 1.4E-13 122.2 17.4 150 347-539 39-209 (944)
104 COG0542 clpA ATP-binding subun 99.0 1.6E-09 3.4E-14 125.8 12.0 190 347-542 523-735 (786)
105 PF12775 AAA_7: P-loop contain 99.0 2.7E-09 5.9E-14 112.2 12.4 204 344-565 32-249 (272)
106 KOG0990|consensus 99.0 7.8E-10 1.7E-14 114.4 7.5 269 341-697 58-335 (360)
107 TIGR03346 chaperone_ClpB ATP-d 99.0 3.5E-09 7.5E-14 128.2 14.4 203 346-565 596-819 (852)
108 PRK14961 DNA polymerase III su 99.0 1.6E-08 3.4E-13 111.1 17.6 185 348-589 41-242 (363)
109 COG3283 TyrR Transcriptional r 99.0 4.2E-09 9.1E-14 110.1 11.9 213 344-586 226-444 (511)
110 PRK10365 transcriptional regul 99.0 5.9E-09 1.3E-13 117.5 14.1 215 344-587 161-385 (441)
111 PRK14956 DNA polymerase III su 99.0 1.6E-08 3.4E-13 112.7 17.1 186 348-590 43-245 (484)
112 PRK14960 DNA polymerase III su 99.0 1.8E-08 3.8E-13 115.3 17.6 187 346-589 38-241 (702)
113 KOG0730|consensus 99.0 1.5E-09 3.3E-14 121.7 8.8 186 346-590 469-673 (693)
114 PRK08691 DNA polymerase III su 98.9 1.4E-08 3.1E-13 117.0 16.8 187 347-590 40-243 (709)
115 PRK13341 recombination factor 98.9 6.6E-09 1.4E-13 122.4 14.5 185 346-588 53-244 (725)
116 CHL00206 ycf2 Ycf2; Provisiona 98.9 3.8E-09 8.3E-14 130.1 12.6 135 410-589 1733-1875(2281)
117 PRK14957 DNA polymerase III su 98.9 1.8E-08 3.9E-13 114.9 16.8 187 347-590 40-243 (546)
118 PRK14958 DNA polymerase III su 98.9 1.6E-08 3.6E-13 115.1 16.5 182 348-589 41-242 (509)
119 KOG0742|consensus 98.9 1.1E-08 2.3E-13 108.5 13.5 131 346-506 385-526 (630)
120 TIGR03689 pup_AAA proteasome A 98.9 7.3E-09 1.6E-13 116.9 13.1 139 346-508 217-378 (512)
121 COG1224 TIP49 DNA helicase TIP 98.9 2.6E-08 5.6E-13 104.4 15.9 146 410-596 292-437 (450)
122 PF00004 AAA: ATPase family as 98.9 8.5E-10 1.8E-14 102.3 3.7 116 348-493 1-131 (132)
123 PRK06645 DNA polymerase III su 98.9 3.7E-08 8.1E-13 111.6 17.2 190 346-589 44-254 (507)
124 KOG0745|consensus 98.9 7.4E-09 1.6E-13 110.7 10.6 117 344-460 225-356 (564)
125 PRK10865 protein disaggregatio 98.9 7.2E-09 1.6E-13 125.1 12.0 186 347-539 600-806 (857)
126 PRK10733 hflB ATP-dependent me 98.8 1.5E-08 3.2E-13 119.1 12.4 185 347-589 187-390 (644)
127 cd00009 AAA The AAA+ (ATPases 98.8 6.2E-09 1.3E-13 97.3 7.5 127 344-493 18-150 (151)
128 PRK07994 DNA polymerase III su 98.8 6.1E-08 1.3E-12 112.2 17.1 183 347-589 39-242 (647)
129 PRK12323 DNA polymerase III su 98.8 2.3E-08 5E-13 114.1 13.0 123 410-589 125-247 (700)
130 KOG0652|consensus 98.8 1.2E-08 2.6E-13 102.4 9.3 187 347-593 207-414 (424)
131 CHL00095 clpC Clp protease ATP 98.8 1.1E-07 2.3E-12 115.1 19.4 49 663-713 613-661 (821)
132 COG0464 SpoVK ATPases of the A 98.8 1.5E-08 3.3E-13 116.0 11.5 187 345-589 276-481 (494)
133 PRK08903 DnaA regulatory inact 98.8 5.7E-08 1.2E-12 99.6 14.5 181 344-588 41-223 (227)
134 PRK08451 DNA polymerase III su 98.8 1.3E-07 2.8E-12 107.4 18.3 184 348-588 39-239 (535)
135 KOG0737|consensus 98.8 2.3E-09 5.1E-14 113.1 3.8 135 345-505 127-271 (386)
136 PRK14959 DNA polymerase III su 98.8 2.3E-08 5E-13 114.8 12.0 187 346-589 39-242 (624)
137 KOG0736|consensus 98.8 2.1E-08 4.5E-13 113.8 11.3 131 345-506 705-854 (953)
138 TIGR03420 DnaA_homol_Hda DnaA 98.8 4.9E-08 1.1E-12 99.8 13.0 184 344-588 37-225 (226)
139 smart00763 AAA_PrkA PrkA AAA d 98.8 1.7E-08 3.7E-13 108.5 9.9 88 402-498 229-316 (361)
140 KOG0731|consensus 98.8 1.5E-08 3.2E-13 117.0 10.0 189 347-589 346-551 (774)
141 COG0465 HflB ATP-dependent Zn 98.8 1.1E-08 2.4E-13 116.0 8.1 131 346-508 184-333 (596)
142 PRK08084 DNA replication initi 98.8 6.4E-08 1.4E-12 99.9 12.8 187 344-589 44-234 (235)
143 PRK14969 DNA polymerase III su 98.8 1.3E-07 2.7E-12 108.6 16.3 181 348-589 41-242 (527)
144 COG5271 MDN1 AAA ATPase contai 98.8 8.7E-08 1.9E-12 114.4 14.8 197 345-566 1543-1751(4600)
145 TIGR01243 CDC48 AAA family ATP 98.8 3E-08 6.4E-13 118.7 11.5 127 346-504 488-631 (733)
146 KOG1942|consensus 98.8 1.1E-07 2.5E-12 97.0 13.7 145 410-594 297-441 (456)
147 KOG0733|consensus 98.8 7.3E-09 1.6E-13 114.7 5.6 141 346-505 224-371 (802)
148 PRK14963 DNA polymerase III su 98.8 7.9E-08 1.7E-12 109.4 14.2 185 347-589 37-238 (504)
149 PRK05563 DNA polymerase III su 98.8 2.1E-07 4.6E-12 107.5 17.8 184 347-588 40-241 (559)
150 PRK12402 replication factor C 98.8 1.6E-07 3.6E-12 101.9 16.0 123 408-589 124-247 (337)
151 PRK11331 5-methylcytosine-spec 98.7 6.5E-08 1.4E-12 106.8 12.6 141 344-495 193-359 (459)
152 PRK14964 DNA polymerase III su 98.7 1.5E-07 3.2E-12 106.1 15.6 185 346-587 36-237 (491)
153 PRK14951 DNA polymerase III su 98.7 9E-08 1.9E-12 110.6 14.2 122 410-589 125-247 (618)
154 TIGR01243 CDC48 AAA family ATP 98.7 2.4E-07 5.2E-12 111.0 18.3 130 345-506 212-357 (733)
155 PRK10865 protein disaggregatio 98.7 5.4E-07 1.2E-11 109.1 21.3 50 662-713 671-720 (857)
156 COG5271 MDN1 AAA ATPase contai 98.7 6E-08 1.3E-12 115.7 12.1 176 344-546 887-1067(4600)
157 PRK06620 hypothetical protein; 98.7 3E-07 6.4E-12 93.5 15.7 166 346-588 45-213 (214)
158 PRK14952 DNA polymerase III su 98.7 2E-07 4.2E-12 107.4 16.0 124 408-588 117-241 (584)
159 PRK05896 DNA polymerase III su 98.7 1.5E-07 3.3E-12 107.6 14.7 185 347-588 40-241 (605)
160 COG1066 Sms Predicted ATP-depe 98.7 8.8E-09 1.9E-13 110.2 4.3 87 287-381 6-132 (456)
161 PRK00440 rfc replication facto 98.7 2.6E-07 5.5E-12 99.5 14.7 181 346-589 39-224 (319)
162 TIGR03346 chaperone_ClpB ATP-d 98.7 1.6E-06 3.4E-11 105.4 23.0 49 663-713 669-717 (852)
163 PRK05201 hslU ATP-dependent pr 98.7 9.5E-08 2.1E-12 104.3 11.2 121 409-543 249-383 (443)
164 TIGR03345 VI_ClpV1 type VI sec 98.7 1.3E-07 2.9E-12 114.0 13.5 174 344-541 207-408 (852)
165 TIGR02928 orc1/cdc6 family rep 98.7 8.4E-07 1.8E-11 97.6 18.5 143 411-592 131-275 (365)
166 COG4650 RtcR Sigma54-dependent 98.7 3.3E-08 7.1E-13 100.8 6.1 239 344-604 207-456 (531)
167 TIGR02397 dnaX_nterm DNA polym 98.6 4.7E-07 1E-11 99.1 15.8 186 347-589 38-240 (355)
168 PRK06893 DNA replication initi 98.6 3.2E-07 7E-12 94.3 12.9 181 346-589 40-228 (229)
169 PRK14965 DNA polymerase III su 98.6 5.3E-07 1.1E-11 104.7 15.8 184 347-587 40-240 (576)
170 PRK07764 DNA polymerase III su 98.6 8.1E-07 1.7E-11 106.2 17.7 186 347-588 38-243 (824)
171 KOG0739|consensus 98.6 2.7E-08 5.9E-13 101.8 4.1 128 345-505 166-309 (439)
172 PRK08727 hypothetical protein; 98.6 4.9E-07 1.1E-11 93.2 13.2 182 347-589 43-229 (233)
173 PLN00020 ribulose bisphosphate 98.6 6.2E-08 1.3E-12 103.6 6.5 140 345-505 148-308 (413)
174 KOG0728|consensus 98.6 1.1E-07 2.4E-12 95.2 7.3 130 346-507 182-330 (404)
175 PRK06647 DNA polymerase III su 98.6 9.3E-07 2E-11 101.9 16.0 182 347-588 40-241 (563)
176 TIGR00390 hslU ATP-dependent p 98.6 1.4E-07 3.1E-12 103.0 8.7 139 408-564 246-397 (441)
177 KOG0733|consensus 98.6 6.5E-08 1.4E-12 107.4 6.0 125 346-503 546-687 (802)
178 PRK09087 hypothetical protein; 98.6 4.6E-07 1E-11 92.9 11.9 175 346-590 45-221 (226)
179 PRK00411 cdc6 cell division co 98.6 8.2E-07 1.8E-11 98.7 14.7 202 346-591 56-282 (394)
180 KOG0991|consensus 98.6 1.4E-07 3E-12 93.7 7.3 109 346-487 49-165 (333)
181 PTZ00112 origin recognition co 98.6 6.4E-07 1.4E-11 104.2 13.8 134 412-591 872-1006(1164)
182 PRK14953 DNA polymerase III su 98.5 1.7E-06 3.8E-11 98.2 16.8 185 348-589 41-242 (486)
183 PHA02544 44 clamp loader, smal 98.5 1.8E-06 3.9E-11 93.0 15.9 152 347-539 44-198 (316)
184 PRK04132 replication factor C 98.5 7.7E-07 1.7E-11 105.8 13.9 179 346-587 565-750 (846)
185 KOG0727|consensus 98.5 5.2E-07 1.1E-11 90.5 10.5 186 346-589 190-394 (408)
186 PRK09111 DNA polymerase III su 98.5 2.4E-06 5.2E-11 99.0 17.4 185 346-588 47-254 (598)
187 PRK12422 chromosomal replicati 98.5 5.8E-07 1.3E-11 101.0 11.5 189 346-589 142-341 (445)
188 COG1067 LonB Predicted ATP-dep 98.5 2.7E-06 5.8E-11 98.5 16.7 188 381-590 191-398 (647)
189 PRK07133 DNA polymerase III su 98.5 1.3E-06 2.8E-11 102.0 14.0 183 348-588 43-240 (725)
190 PRK00149 dnaA chromosomal repl 98.5 5E-07 1.1E-11 102.2 10.3 189 347-590 150-348 (450)
191 PRK14955 DNA polymerase III su 98.5 1.6E-06 3.6E-11 96.4 14.0 129 407-588 125-254 (397)
192 PRK06305 DNA polymerase III su 98.5 2.6E-06 5.6E-11 96.1 15.6 153 347-539 41-211 (451)
193 PRK14087 dnaA chromosomal repl 98.4 6.6E-07 1.4E-11 100.8 10.2 194 346-589 142-346 (450)
194 TIGR00362 DnaA chromosomal rep 98.4 9.1E-07 2E-11 98.8 11.3 189 346-589 137-335 (405)
195 PRK04195 replication factor C 98.4 1.8E-06 4E-11 98.5 13.9 144 345-539 39-191 (482)
196 PRK11823 DNA repair protein Ra 98.4 1.7E-07 3.6E-12 105.5 5.1 86 286-379 5-118 (446)
197 PRK14970 DNA polymerase III su 98.4 3E-06 6.4E-11 93.4 14.5 154 346-539 40-198 (367)
198 PRK14948 DNA polymerase III su 98.4 1.7E-06 3.7E-11 100.9 12.5 127 346-499 39-184 (620)
199 PF12774 AAA_6: Hydrolytic ATP 98.4 4.1E-06 8.9E-11 85.9 13.8 187 345-571 32-227 (231)
200 KOG0726|consensus 98.4 4.8E-07 1E-11 92.5 6.9 191 346-591 220-426 (440)
201 PRK14950 DNA polymerase III su 98.4 6.2E-06 1.3E-10 96.2 16.7 184 347-588 40-242 (585)
202 PRK14086 dnaA chromosomal repl 98.4 1.5E-06 3.3E-11 99.6 11.4 188 347-589 316-513 (617)
203 KOG0743|consensus 98.4 1.6E-06 3.5E-11 94.4 10.0 118 345-497 235-372 (457)
204 TIGR03015 pepcterm_ATPase puta 98.3 5.4E-06 1.2E-10 87.0 13.2 209 344-591 42-266 (269)
205 PRK07940 DNA polymerase III su 98.3 1.4E-06 2.9E-11 96.4 8.9 130 346-505 37-186 (394)
206 PRK14954 DNA polymerase III su 98.3 1E-05 2.2E-10 94.1 16.3 92 407-539 125-217 (620)
207 PRK05642 DNA replication initi 98.3 8.8E-06 1.9E-10 84.0 14.0 183 346-588 46-232 (234)
208 PF00308 Bac_DnaA: Bacterial d 98.3 3.4E-06 7.3E-11 86.1 10.7 179 339-573 26-218 (219)
209 PRK05707 DNA polymerase III su 98.3 7.4E-06 1.6E-10 88.6 13.2 132 347-506 24-176 (328)
210 COG2812 DnaX DNA polymerase II 98.3 4.1E-06 8.8E-11 94.4 11.5 187 347-590 40-243 (515)
211 TIGR00416 sms DNA repair prote 98.3 7E-07 1.5E-11 100.6 5.2 87 286-380 5-133 (454)
212 TIGR02688 conserved hypothetic 98.2 7.8E-06 1.7E-10 89.4 12.3 214 344-590 208-432 (449)
213 PF14532 Sigma54_activ_2: Sigm 98.2 7.2E-07 1.6E-11 84.2 3.8 110 344-487 20-129 (138)
214 KOG0744|consensus 98.2 2.7E-06 5.9E-11 88.4 8.2 131 345-505 177-337 (423)
215 KOG0729|consensus 98.2 1.3E-06 2.9E-11 88.2 5.8 123 346-498 212-351 (435)
216 PRK14971 DNA polymerase III su 98.2 2.2E-05 4.8E-10 91.7 16.5 151 348-538 42-210 (614)
217 smart00382 AAA ATPases associa 98.2 9.7E-07 2.1E-11 81.4 4.1 131 345-493 2-145 (148)
218 PRK14088 dnaA chromosomal repl 98.2 2.7E-06 5.9E-11 95.7 8.3 195 341-589 125-330 (440)
219 COG1474 CDC6 Cdc6-related prot 98.2 9.3E-06 2E-10 88.9 12.1 204 346-590 43-264 (366)
220 cd01121 Sms Sms (bacterial rad 98.2 1.4E-06 3.1E-11 95.5 4.6 83 289-379 1-120 (372)
221 TIGR00678 holB DNA polymerase 98.1 4.6E-06 9.9E-11 83.0 7.3 126 347-500 16-160 (188)
222 PF05673 DUF815: Protein of un 98.1 1.2E-05 2.5E-10 82.1 9.9 141 345-505 52-204 (249)
223 PHA01747 putative ATP-dependen 98.1 1.7E-05 3.6E-10 84.5 9.9 166 344-523 189-371 (425)
224 PRK08058 DNA polymerase III su 98.1 0.0002 4.3E-09 77.8 18.5 70 408-505 109-179 (329)
225 COG0593 DnaA ATPase involved i 98.0 3.3E-05 7.1E-10 84.8 12.1 207 331-593 97-315 (408)
226 KOG0735|consensus 98.0 8.1E-06 1.8E-10 92.5 7.1 123 345-500 701-840 (952)
227 COG0470 HolB ATPase involved i 98.0 1.3E-05 2.8E-10 86.4 8.2 124 345-495 23-168 (325)
228 KOG0651|consensus 98.0 4.4E-06 9.6E-11 86.5 3.7 119 346-493 167-301 (388)
229 PRK06964 DNA polymerase III su 98.0 5.9E-05 1.3E-09 81.8 12.5 69 410-506 133-202 (342)
230 KOG0740|consensus 98.0 1.8E-06 4E-11 94.5 0.4 125 347-498 188-323 (428)
231 COG1220 HslU ATP-dependent pro 97.9 3.2E-05 7E-10 81.1 8.5 125 409-546 250-387 (444)
232 KOG0730|consensus 97.9 6.2E-05 1.3E-09 85.4 10.5 131 345-506 218-362 (693)
233 PRK06871 DNA polymerase III su 97.9 0.00015 3.2E-09 78.1 13.0 69 410-506 108-177 (325)
234 PF13177 DNA_pol3_delta2: DNA 97.9 2.9E-05 6.3E-10 75.4 6.9 57 409-493 102-159 (162)
235 PRK07993 DNA polymerase III su 97.8 0.00012 2.6E-09 79.5 11.8 131 345-506 24-178 (334)
236 KOG1808|consensus 97.8 2.4E-05 5.1E-10 98.2 6.1 151 344-503 439-594 (1856)
237 PF06068 TIP49: TIP49 C-termin 97.8 0.00026 5.7E-09 76.0 13.1 102 410-540 279-380 (398)
238 PRK05564 DNA polymerase III su 97.8 0.00061 1.3E-08 73.5 16.3 130 347-506 28-163 (313)
239 PF13337 Lon_2: Putative ATP-d 97.8 0.00044 9.5E-09 76.4 14.5 212 344-590 207-430 (457)
240 KOG0732|consensus 97.7 3E-05 6.4E-10 92.7 5.6 125 347-507 301-450 (1080)
241 KOG0741|consensus 97.7 7.9E-06 1.7E-10 89.8 0.5 126 347-499 258-405 (744)
242 KOG1051|consensus 97.7 0.00011 2.5E-09 87.2 8.8 113 344-461 590-710 (898)
243 PRK09112 DNA polymerase III su 97.6 9.1E-05 2E-09 80.9 7.3 65 411-503 143-208 (351)
244 PRK07471 DNA polymerase III su 97.6 0.00028 6.1E-09 77.5 10.7 69 411-507 143-212 (365)
245 PRK08769 DNA polymerase III su 97.6 0.00027 5.9E-09 76.0 9.5 68 410-505 114-182 (319)
246 PRK06921 hypothetical protein; 97.5 1.4E-05 3E-10 84.0 -0.8 26 345-370 117-142 (266)
247 PF00910 RNA_helicase: RNA hel 97.5 0.00012 2.5E-09 66.0 4.7 99 348-460 1-106 (107)
248 PRK08699 DNA polymerase III su 97.5 0.00046 9.9E-09 74.7 10.0 71 408-505 112-182 (325)
249 KOG0736|consensus 97.5 0.0017 3.6E-08 75.0 14.0 136 345-505 431-573 (953)
250 PRK12377 putative replication 97.4 2.2E-05 4.8E-10 81.4 -1.0 116 345-486 101-222 (248)
251 PRK15455 PrkA family serine pr 97.4 0.00068 1.5E-08 77.1 10.7 84 402-494 248-331 (644)
252 PRK07399 DNA polymerase III su 97.4 0.00067 1.5E-08 73.0 9.6 69 408-505 123-192 (314)
253 TIGR00602 rad24 checkpoint pro 97.4 0.0011 2.4E-08 77.4 11.4 24 348-371 113-136 (637)
254 PRK06090 DNA polymerase III su 97.3 0.00072 1.6E-08 72.7 9.1 133 346-506 26-178 (319)
255 KOG2680|consensus 97.3 0.0064 1.4E-07 63.2 14.8 181 345-594 252-432 (454)
256 COG2607 Predicted ATPase (AAA+ 97.3 0.0024 5.1E-08 64.6 11.4 135 346-503 86-234 (287)
257 KOG2035|consensus 97.3 0.0011 2.3E-08 68.3 8.6 69 411-506 129-197 (351)
258 TIGR02653 Lon_rel_chp conserve 97.2 0.0024 5.2E-08 73.5 12.1 215 344-590 215-439 (675)
259 TIGR00368 Mg chelatase-related 97.2 0.00036 7.9E-09 79.5 5.4 66 654-719 288-354 (499)
260 PRK09862 putative ATP-dependen 97.2 0.00038 8.3E-09 79.1 5.1 66 654-719 287-353 (506)
261 PRK08181 transposase; Validate 97.2 0.00011 2.4E-09 77.2 0.3 119 345-486 106-230 (269)
262 PRK08116 hypothetical protein; 97.2 6E-05 1.3E-09 79.4 -1.7 116 345-486 114-237 (268)
263 KOG1514|consensus 97.1 0.0076 1.6E-07 69.3 13.9 200 346-595 423-659 (767)
264 PRK06526 transposase; Provisio 97.0 0.0002 4.4E-09 74.7 1.2 109 344-468 97-207 (254)
265 KOG1969|consensus 97.0 0.0056 1.2E-07 70.6 12.3 82 344-434 325-412 (877)
266 PF01695 IstB_IS21: IstB-like 97.0 6.5E-05 1.4E-09 74.2 -3.0 124 344-487 46-172 (178)
267 PRK09183 transposase/IS protei 97.0 0.0001 2.2E-09 77.3 -1.7 119 345-486 102-228 (259)
268 PF13148 DUF3987: Protein of u 97.0 0.0036 7.9E-08 69.1 10.4 183 410-598 150-367 (378)
269 PF05272 VirE: Virulence-assoc 97.0 0.0013 2.8E-08 66.0 6.0 97 345-462 52-150 (198)
270 PF03266 NTPase_1: NTPase; In 96.9 0.0012 2.5E-08 64.6 5.1 23 347-369 1-23 (168)
271 PF08298 AAA_PrkA: PrkA AAA do 96.9 0.0009 1.9E-08 71.9 4.2 85 402-495 226-310 (358)
272 PF01078 Mg_chelatase: Magnesi 96.8 0.0021 4.5E-08 64.4 6.0 63 654-716 99-161 (206)
273 PRK06835 DNA replication prote 96.8 0.00017 3.7E-09 78.0 -2.2 117 345-487 183-306 (329)
274 PRK07952 DNA replication prote 96.7 0.00029 6.3E-09 72.9 -0.9 111 346-486 100-221 (244)
275 PF13654 AAA_32: AAA domain; P 96.7 0.0073 1.6E-07 69.1 10.1 170 398-590 321-505 (509)
276 PF13401 AAA_22: AAA domain; P 96.7 0.00044 9.6E-09 63.9 0.1 25 345-369 4-28 (131)
277 COG0542 clpA ATP-binding subun 96.7 0.0097 2.1E-07 70.3 11.0 46 664-712 596-642 (786)
278 PF05621 TniB: Bacterial TniB 96.7 0.0047 1E-07 65.2 7.5 26 346-371 62-87 (302)
279 PHA02774 E1; Provisional 96.6 0.0047 1E-07 70.4 7.9 103 342-463 431-534 (613)
280 COG1484 DnaC DNA replication p 96.5 0.00056 1.2E-08 71.4 -0.2 107 344-468 104-215 (254)
281 PHA02624 large T antigen; Prov 96.5 0.0027 5.9E-08 72.6 5.0 120 342-495 428-562 (647)
282 PRK05917 DNA polymerase III su 96.5 0.0039 8.5E-08 65.9 5.5 118 346-494 20-153 (290)
283 COG5245 DYN1 Dynein, heavy cha 96.3 0.086 1.9E-06 65.1 15.6 144 410-574 1564-1719(3164)
284 TIGR02442 Cob-chelat-sub cobal 96.3 0.0056 1.2E-07 72.3 5.9 65 654-718 119-183 (633)
285 KOG2545|consensus 96.2 0.16 3.6E-06 55.1 16.0 199 359-591 325-535 (543)
286 KOG0735|consensus 96.2 0.051 1.1E-06 62.8 12.5 137 344-505 430-583 (952)
287 PRK07132 DNA polymerase III su 96.2 0.022 4.7E-07 60.9 9.2 130 347-506 20-160 (299)
288 COG1618 Predicted nucleotide k 96.2 0.012 2.5E-07 56.3 6.2 25 345-369 5-29 (179)
289 PF03969 AFG1_ATPase: AFG1-lik 96.1 0.002 4.3E-08 70.6 1.2 27 345-371 62-88 (362)
290 PRK05818 DNA polymerase III su 96.1 0.021 4.5E-07 59.3 8.5 122 346-495 8-147 (261)
291 CHL00081 chlI Mg-protoporyphyr 96.0 0.0089 1.9E-07 65.1 5.5 65 654-718 137-201 (350)
292 PRK13407 bchI magnesium chelat 96.0 0.0094 2E-07 64.6 5.7 65 654-718 121-185 (334)
293 TIGR02030 BchI-ChlI magnesium 95.9 0.01 2.3E-07 64.4 5.6 65 654-718 124-188 (337)
294 TIGR02031 BchD-ChlD magnesium 95.8 0.012 2.6E-07 68.8 5.7 62 654-715 77-138 (589)
295 PF00519 PPV_E1_C: Papillomavi 95.6 0.037 8E-07 60.1 8.1 120 341-493 258-381 (432)
296 PF13173 AAA_14: AAA domain 95.5 0.013 2.9E-07 54.3 3.6 81 346-435 3-86 (128)
297 PF13335 Mg_chelatase_2: Magne 95.4 0.048 1E-06 48.1 6.8 37 554-590 59-95 (96)
298 PRK04296 thymidine kinase; Pro 95.4 0.063 1.4E-06 53.5 8.6 22 348-369 5-26 (190)
299 TIGR01613 primase_Cterm phage/ 95.4 0.13 2.9E-06 55.2 11.7 125 345-492 76-201 (304)
300 PF13671 AAA_33: AAA domain; P 95.4 0.012 2.6E-07 55.2 3.2 23 348-370 2-24 (143)
301 PF03215 Rad17: Rad17 cell cyc 95.4 0.026 5.6E-07 64.8 6.4 91 346-436 46-159 (519)
302 PF13207 AAA_17: AAA domain; P 95.4 0.012 2.5E-07 53.6 2.9 22 348-369 2-23 (121)
303 PRK04040 adenylate kinase; Pro 95.3 0.075 1.6E-06 52.9 8.6 24 347-370 4-27 (188)
304 PF01443 Viral_helicase1: Vira 95.3 0.035 7.5E-07 56.7 6.3 21 348-368 1-21 (234)
305 PRK07276 DNA polymerase III su 95.2 0.14 3.1E-06 54.3 10.8 58 409-494 104-162 (290)
306 PF09848 DUF2075: Uncharacteri 95.1 0.01 2.2E-07 65.1 2.0 23 347-369 3-25 (352)
307 COG3267 ExeA Type II secretory 95.1 0.1 2.3E-06 53.6 8.8 199 344-584 50-266 (269)
308 KOG3347|consensus 94.9 0.018 3.9E-07 54.2 2.5 26 345-370 7-32 (176)
309 PHA00729 NTP-binding motif con 94.8 0.019 4.1E-07 58.6 2.8 26 344-369 16-41 (226)
310 PF13604 AAA_30: AAA domain; P 94.8 0.017 3.6E-07 57.9 2.3 92 344-435 17-119 (196)
311 COG4178 ABC-type uncharacteriz 94.7 0.043 9.3E-07 63.3 5.7 26 345-370 419-444 (604)
312 PF09723 Zn-ribbon_8: Zinc rib 94.7 0.034 7.5E-07 41.1 3.2 30 288-318 5-34 (42)
313 COG3854 SpoIIIAA ncharacterize 94.7 0.023 4.9E-07 57.4 2.8 27 344-370 136-162 (308)
314 PRK14532 adenylate kinase; Pro 94.6 0.027 5.9E-07 55.8 3.4 24 347-370 2-25 (188)
315 PF13238 AAA_18: AAA domain; P 94.6 0.026 5.7E-07 51.5 2.9 22 348-369 1-22 (129)
316 KOG2170|consensus 94.5 0.013 2.8E-07 61.3 0.7 87 345-435 110-204 (344)
317 COG1239 ChlI Mg-chelatase subu 94.5 0.043 9.4E-07 60.2 4.7 64 654-717 137-200 (423)
318 COG0563 Adk Adenylate kinase a 94.4 0.031 6.8E-07 55.1 3.1 24 347-370 2-25 (178)
319 PRK13947 shikimate kinase; Pro 94.3 0.036 7.8E-07 53.8 3.4 27 347-373 3-29 (171)
320 PRK08118 topology modulation p 94.3 0.032 7E-07 54.4 3.1 24 347-370 3-26 (167)
321 PRK00131 aroK shikimate kinase 94.2 0.047 1E-06 52.9 3.8 27 345-371 4-30 (175)
322 cd00464 SK Shikimate kinase (S 94.1 0.04 8.8E-07 52.3 3.2 24 347-370 1-24 (154)
323 cd02019 NK Nucleoside/nucleoti 94.0 0.045 9.9E-07 45.0 2.9 22 348-369 2-23 (69)
324 TIGR01359 UMP_CMP_kin_fam UMP- 93.9 0.048 1E-06 53.6 3.4 23 348-370 2-24 (183)
325 PRK03839 putative kinase; Prov 93.9 0.045 9.7E-07 53.8 3.1 24 347-370 2-25 (180)
326 PRK14530 adenylate kinase; Pro 93.8 0.051 1.1E-06 55.2 3.5 25 346-370 4-28 (215)
327 PF13245 AAA_19: Part of AAA d 93.8 0.053 1.1E-06 45.6 2.9 23 347-369 12-35 (76)
328 PF13086 AAA_11: AAA domain; P 93.7 0.045 9.9E-07 55.3 3.0 26 344-369 15-41 (236)
329 PRK00625 shikimate kinase; Pro 93.7 0.049 1.1E-06 53.5 2.9 24 347-370 2-25 (173)
330 KOG3595|consensus 93.7 0.12 2.5E-06 66.6 7.0 144 345-502 127-280 (1395)
331 PRK06581 DNA polymerase III su 93.6 0.34 7.4E-06 49.8 8.8 125 346-498 16-151 (263)
332 PRK07261 topology modulation p 93.6 0.056 1.2E-06 52.9 3.1 23 347-369 2-24 (171)
333 PRK13949 shikimate kinase; Pro 93.5 0.057 1.2E-06 52.8 3.0 24 347-370 3-26 (169)
334 cd01120 RecA-like_NTPases RecA 93.5 0.05 1.1E-06 51.5 2.6 24 347-370 1-24 (165)
335 PF13191 AAA_16: AAA ATPase do 93.4 0.047 1E-06 53.3 2.4 26 345-370 24-49 (185)
336 PRK06762 hypothetical protein; 93.4 0.063 1.4E-06 51.9 3.2 24 347-370 4-27 (166)
337 PF08477 Miro: Miro-like prote 93.3 0.067 1.4E-06 48.3 3.0 24 347-370 1-24 (119)
338 PRK14531 adenylate kinase; Pro 93.3 0.073 1.6E-06 52.6 3.4 24 347-370 4-27 (183)
339 cd01428 ADK Adenylate kinase ( 93.2 0.075 1.6E-06 52.6 3.4 24 347-370 1-24 (194)
340 PF05729 NACHT: NACHT domain 93.1 0.066 1.4E-06 51.1 2.8 22 348-369 3-24 (166)
341 cd02021 GntK Gluconate kinase 93.1 0.072 1.6E-06 50.5 3.0 22 348-369 2-23 (150)
342 TIGR01313 therm_gnt_kin carboh 93.1 0.064 1.4E-06 51.7 2.7 23 348-370 1-23 (163)
343 cd00227 CPT Chloramphenicol (C 93.0 0.086 1.9E-06 51.6 3.5 25 347-371 4-28 (175)
344 PF07726 AAA_3: ATPase family 93.0 0.18 3.9E-06 46.8 5.3 51 663-715 64-114 (131)
345 PRK14526 adenylate kinase; Pro 92.9 0.088 1.9E-06 53.4 3.4 24 347-370 2-25 (211)
346 TIGR00150 HI0065_YjeE ATPase, 92.9 0.14 3.1E-06 47.9 4.5 29 342-370 19-47 (133)
347 PF05970 PIF1: PIF1-like helic 92.8 0.12 2.6E-06 57.0 4.6 92 344-435 21-128 (364)
348 PRK08233 hypothetical protein; 92.8 0.086 1.9E-06 51.5 3.2 25 346-370 4-28 (182)
349 TIGR01360 aden_kin_iso1 adenyl 92.8 0.073 1.6E-06 52.3 2.6 23 347-369 5-27 (188)
350 TIGR02322 phosphon_PhnN phosph 92.7 0.09 2E-06 51.5 3.1 24 347-370 3-26 (179)
351 PRK14528 adenylate kinase; Pro 92.7 0.1 2.2E-06 51.8 3.5 24 347-370 3-26 (186)
352 PTZ00088 adenylate kinase 1; P 92.6 0.099 2.1E-06 53.8 3.4 26 345-370 6-31 (229)
353 smart00834 CxxC_CXXC_SSSS Puta 92.6 0.13 2.9E-06 37.4 3.2 30 288-318 5-34 (41)
354 PRK08939 primosomal protein Dn 92.6 0.077 1.7E-06 57.0 2.7 26 345-370 156-181 (306)
355 TIGR01448 recD_rel helicase, p 92.6 0.094 2E-06 62.9 3.6 41 330-370 323-363 (720)
356 PRK06217 hypothetical protein; 92.5 0.11 2.4E-06 51.3 3.5 24 347-370 3-26 (183)
357 PRK10078 ribose 1,5-bisphospho 92.5 0.095 2.1E-06 51.9 3.0 26 346-371 3-28 (186)
358 TIGR01351 adk adenylate kinase 92.4 0.11 2.3E-06 52.6 3.3 24 347-370 1-24 (210)
359 PRK05057 aroK shikimate kinase 92.3 0.13 2.7E-06 50.5 3.6 26 345-370 4-29 (172)
360 TIGR02605 CxxC_CxxC_SSSS putat 92.3 0.14 3.1E-06 39.5 3.1 30 288-318 5-34 (52)
361 PRK02496 adk adenylate kinase; 92.2 0.099 2.1E-06 51.6 2.7 24 347-370 3-26 (184)
362 COG4619 ABC-type uncharacteriz 92.2 0.12 2.5E-06 50.0 3.0 25 347-371 31-55 (223)
363 PF13521 AAA_28: AAA domain; P 92.1 0.12 2.7E-06 49.8 3.2 21 348-368 2-22 (163)
364 PHA02530 pseT polynucleotide k 92.1 0.12 2.5E-06 55.2 3.3 24 347-370 4-27 (300)
365 PRK14527 adenylate kinase; Pro 92.1 0.14 3E-06 51.0 3.6 25 346-370 7-31 (191)
366 cd04155 Arl3 Arl3 subfamily. 92.1 0.13 2.7E-06 49.7 3.2 27 342-368 11-37 (173)
367 TIGR01447 recD exodeoxyribonuc 92.1 0.16 3.4E-06 59.5 4.5 37 333-369 148-184 (586)
368 TIGR01618 phage_P_loop phage n 92.0 0.077 1.7E-06 54.1 1.7 22 345-366 12-33 (220)
369 PRK05537 bifunctional sulfate 92.0 0.098 2.1E-06 61.0 2.8 27 344-370 391-417 (568)
370 TIGR03263 guanyl_kin guanylate 91.9 0.12 2.5E-06 50.7 2.9 25 347-371 3-27 (180)
371 PF13555 AAA_29: P-loop contai 91.9 0.15 3.2E-06 41.1 2.9 23 347-369 25-47 (62)
372 PF01926 MMR_HSR1: 50S ribosom 91.9 0.12 2.7E-06 46.6 2.8 21 347-367 1-21 (116)
373 cd02020 CMPK Cytidine monophos 91.9 0.15 3.3E-06 47.8 3.5 23 348-370 2-24 (147)
374 PRK00279 adk adenylate kinase; 91.9 0.14 3E-06 52.0 3.4 24 347-370 2-25 (215)
375 cd03222 ABC_RNaseL_inhibitor T 91.8 0.15 3.3E-06 50.2 3.5 86 346-435 26-116 (177)
376 TIGR02768 TraA_Ti Ti-type conj 91.8 0.13 2.7E-06 62.1 3.5 100 330-433 352-463 (744)
377 cd01130 VirB11-like_ATPase Typ 91.7 0.14 3.1E-06 50.7 3.2 26 345-370 25-50 (186)
378 PLN02200 adenylate kinase fami 91.7 0.14 3.1E-06 52.8 3.3 26 345-370 43-68 (234)
379 PLN02348 phosphoribulokinase 91.7 1.5 3.3E-05 48.4 11.3 27 344-370 48-74 (395)
380 KOG2227|consensus 91.6 0.19 4.1E-06 55.8 4.3 41 411-462 258-299 (529)
381 PRK13851 type IV secretion sys 91.6 0.14 3.1E-06 55.8 3.3 28 344-371 161-188 (344)
382 PTZ00301 uridine kinase; Provi 91.5 1 2.3E-05 45.6 9.3 23 347-369 5-27 (210)
383 PRK14529 adenylate kinase; Pro 91.5 0.16 3.6E-06 51.9 3.5 24 347-370 2-25 (223)
384 cd00071 GMPK Guanosine monopho 91.5 0.16 3.4E-06 47.8 3.1 24 348-371 2-25 (137)
385 cd02027 APSK Adenosine 5'-phos 91.4 0.14 3E-06 48.9 2.7 22 348-369 2-23 (149)
386 COG0703 AroK Shikimate kinase 91.4 0.17 3.7E-06 49.3 3.3 28 345-372 2-29 (172)
387 COG1485 Predicted ATPase [Gene 91.3 0.14 3.1E-06 55.0 2.8 26 346-371 66-91 (367)
388 PRK13900 type IV secretion sys 91.3 0.17 3.7E-06 55.0 3.5 28 344-371 159-186 (332)
389 cd01124 KaiC KaiC is a circadi 91.3 0.15 3.2E-06 50.1 2.8 20 348-367 2-21 (187)
390 cd04177 RSR1 RSR1 subgroup. R 91.2 0.16 3.5E-06 48.9 3.0 23 345-367 1-23 (168)
391 PRK00300 gmk guanylate kinase; 91.2 0.16 3.5E-06 50.8 3.1 25 346-370 6-30 (205)
392 COG1116 TauB ABC-type nitrate/ 91.2 0.16 3.6E-06 52.1 3.0 25 347-371 31-55 (248)
393 PRK03731 aroL shikimate kinase 91.0 0.19 4.1E-06 48.9 3.2 25 347-371 4-28 (171)
394 COG1936 Predicted nucleotide k 90.9 0.18 3.8E-06 49.0 2.8 21 347-367 2-22 (180)
395 cd04137 RheB Rheb (Ras Homolog 90.8 0.18 3.9E-06 49.1 2.9 22 346-367 2-23 (180)
396 PRK13948 shikimate kinase; Pro 90.7 0.22 4.8E-06 49.3 3.4 28 345-372 10-37 (182)
397 TIGR03574 selen_PSTK L-seryl-t 90.7 0.17 3.6E-06 52.6 2.7 23 348-370 2-24 (249)
398 COG4088 Predicted nucleotide k 90.7 0.15 3.3E-06 50.7 2.2 23 348-370 4-26 (261)
399 COG1102 Cmk Cytidylate kinase 90.7 0.18 4E-06 48.4 2.6 28 348-375 3-30 (179)
400 cd01131 PilT Pilus retraction 90.7 0.18 4E-06 50.5 2.9 24 347-370 3-26 (198)
401 KOG2383|consensus 90.6 0.11 2.4E-06 56.4 1.3 26 346-371 115-140 (467)
402 PLN02674 adenylate kinase 90.5 0.22 4.7E-06 51.7 3.3 26 345-370 31-56 (244)
403 PRK05541 adenylylsulfate kinas 90.5 0.22 4.8E-06 48.7 3.2 26 345-370 7-32 (176)
404 PRK13946 shikimate kinase; Pro 90.5 0.24 5.3E-06 49.0 3.5 27 345-371 10-36 (184)
405 cd04119 RJL RJL (RabJ-Like) su 90.5 0.21 4.4E-06 47.6 2.9 22 346-367 1-22 (168)
406 PRK13406 bchD magnesium chelat 90.5 0.37 8E-06 56.3 5.5 61 654-714 86-146 (584)
407 smart00175 RAB Rab subfamily o 90.4 0.2 4.4E-06 47.5 2.8 22 346-367 1-22 (164)
408 TIGR00235 udk uridine kinase. 90.4 0.21 4.5E-06 50.4 3.0 27 345-371 6-32 (207)
409 cd00154 Rab Rab family. Rab G 90.3 0.22 4.8E-06 46.5 2.9 23 346-368 1-23 (159)
410 PRK03846 adenylylsulfate kinas 90.3 0.14 3E-06 51.3 1.6 25 345-369 24-48 (198)
411 TIGR00231 small_GTP small GTP- 90.3 0.22 4.7E-06 46.2 2.8 23 346-368 2-24 (161)
412 cd02023 UMPK Uridine monophosp 90.3 0.22 4.7E-06 49.7 3.0 22 348-369 2-23 (198)
413 cd01878 HflX HflX subfamily. 90.2 0.27 5.8E-06 49.1 3.6 29 340-368 36-64 (204)
414 PLN02459 probable adenylate ki 90.2 0.24 5.3E-06 51.7 3.3 26 345-370 29-54 (261)
415 PF13479 AAA_24: AAA domain 90.2 0.16 3.5E-06 51.6 2.0 21 345-365 3-23 (213)
416 PF00005 ABC_tran: ABC transpo 90.1 0.16 3.4E-06 47.2 1.7 26 345-370 11-36 (137)
417 cd04124 RabL2 RabL2 subfamily. 90.0 0.24 5.1E-06 47.5 2.9 22 346-367 1-22 (161)
418 KOG0060|consensus 89.9 0.23 4.9E-06 56.5 3.0 28 343-370 459-486 (659)
419 cd00157 Rho Rho (Ras homology) 89.9 0.24 5.3E-06 47.4 2.9 22 346-367 1-22 (171)
420 cd04160 Arfrp1 Arfrp1 subfamil 89.9 0.23 5.1E-06 47.5 2.8 22 347-368 1-22 (167)
421 PF00437 T2SE: Type II/IV secr 89.9 0.22 4.7E-06 52.4 2.8 29 344-372 126-154 (270)
422 PRK12339 2-phosphoglycerate ki 89.8 0.26 5.7E-06 49.4 3.1 25 346-370 4-28 (197)
423 PRK14737 gmk guanylate kinase; 89.8 0.28 6E-06 48.8 3.3 27 345-371 4-30 (186)
424 COG3839 MalK ABC-type sugar tr 89.7 0.25 5.3E-06 53.5 3.0 24 347-370 31-54 (338)
425 COG0606 Predicted ATPase with 89.7 0.26 5.6E-06 55.1 3.2 63 654-716 276-338 (490)
426 PRK09825 idnK D-gluconate kina 89.7 0.29 6.2E-06 48.2 3.3 25 347-371 5-29 (176)
427 PF03193 DUF258: Protein of un 89.7 0.45 9.8E-06 46.0 4.5 24 345-368 35-58 (161)
428 PRK00889 adenylylsulfate kinas 89.7 0.24 5.2E-06 48.4 2.7 24 347-370 6-29 (175)
429 COG1136 SalX ABC-type antimicr 89.6 0.5 1.1E-05 48.3 5.0 23 347-369 33-55 (226)
430 cd04113 Rab4 Rab4 subfamily. 89.6 0.27 5.8E-06 46.8 2.9 22 346-367 1-22 (161)
431 PRK05480 uridine/cytidine kina 89.5 0.27 5.8E-06 49.6 3.0 25 345-369 6-30 (209)
432 PRK06547 hypothetical protein; 89.5 0.29 6.3E-06 48.0 3.1 26 345-370 15-40 (172)
433 COG2956 Predicted N-acetylgluc 89.4 0.19 4.2E-06 53.1 1.9 34 286-327 352-385 (389)
434 TIGR02782 TrbB_P P-type conjug 89.4 0.28 6.2E-06 52.5 3.2 27 344-370 131-157 (299)
435 PLN02165 adenylate isopentenyl 89.4 0.38 8.1E-06 52.0 4.1 27 345-371 43-69 (334)
436 cd04156 ARLTS1 ARLTS1 subfamil 89.4 0.27 5.8E-06 46.7 2.7 21 347-367 1-21 (160)
437 cd04138 H_N_K_Ras_like H-Ras/N 89.3 0.3 6.4E-06 46.1 3.0 22 346-367 2-23 (162)
438 PF00406 ADK: Adenylate kinase 89.3 0.24 5.3E-06 47.1 2.4 20 350-369 1-20 (151)
439 cd04136 Rap_like Rap-like subf 89.3 0.29 6.3E-06 46.4 3.0 22 346-367 2-23 (163)
440 cd01862 Rab7 Rab7 subfamily. 89.3 0.28 6E-06 47.1 2.8 22 346-367 1-22 (172)
441 smart00659 RPOLCX RNA polymera 89.2 0.3 6.5E-06 36.5 2.2 27 288-319 2-28 (44)
442 COG4098 comFA Superfamily II D 89.2 0.86 1.9E-05 48.7 6.4 21 344-364 115-135 (441)
443 PRK04182 cytidylate kinase; Pr 89.2 0.34 7.4E-06 47.1 3.4 25 347-371 2-26 (180)
444 smart00173 RAS Ras subfamily o 89.1 0.3 6.5E-06 46.5 2.9 21 347-367 2-22 (164)
445 cd01867 Rab8_Rab10_Rab13_like 89.1 0.29 6.3E-06 47.1 2.8 22 346-367 4-25 (167)
446 PRK01184 hypothetical protein; 89.1 0.31 6.8E-06 47.9 3.1 22 347-369 3-24 (184)
447 PRK14738 gmk guanylate kinase; 89.1 0.32 7E-06 49.0 3.2 26 345-370 13-38 (206)
448 TIGR02173 cyt_kin_arch cytidyl 89.1 0.31 6.7E-06 47.0 3.0 24 347-370 2-25 (171)
449 cd00876 Ras Ras family. The R 89.0 0.3 6.6E-06 45.9 2.9 21 347-367 1-21 (160)
450 PF06309 Torsin: Torsin; Inte 89.0 0.29 6.3E-06 45.2 2.5 35 345-383 53-87 (127)
451 PLN02318 phosphoribulokinase/u 89.0 3.4 7.4E-05 48.0 11.5 27 344-370 64-90 (656)
452 TIGR02788 VirB11 P-type DNA tr 88.9 0.33 7.1E-06 52.3 3.3 28 344-371 143-170 (308)
453 PRK13833 conjugal transfer pro 88.9 0.31 6.8E-06 52.6 3.1 27 344-370 143-169 (323)
454 cd04159 Arl10_like Arl10-like 88.9 0.27 6E-06 45.9 2.4 21 348-368 2-22 (159)
455 TIGR02237 recomb_radB DNA repa 88.9 0.3 6.4E-06 49.1 2.8 24 345-368 12-35 (209)
456 PRK13695 putative NTPase; Prov 88.9 0.32 6.9E-06 47.5 2.9 23 347-369 2-24 (174)
457 COG1120 FepC ABC-type cobalami 88.9 0.32 7E-06 50.7 3.0 27 345-371 28-54 (258)
458 cd04157 Arl6 Arl6 subfamily. 88.9 0.28 6.1E-06 46.5 2.5 21 347-367 1-21 (162)
459 PF00485 PRK: Phosphoribulokin 88.8 0.3 6.5E-06 48.7 2.7 24 348-371 2-25 (194)
460 cd03281 ABC_MSH5_euk MutS5 hom 88.7 0.79 1.7E-05 46.5 5.8 22 346-367 30-51 (213)
461 cd01860 Rab5_related Rab5-rela 88.7 0.33 7.2E-06 46.1 2.9 22 346-367 2-23 (163)
462 cd04101 RabL4 RabL4 (Rab-like4 88.6 0.34 7.3E-06 46.2 2.9 22 346-367 1-22 (164)
463 cd03255 ABC_MJ0796_Lo1CDE_FtsE 88.6 0.33 7.2E-06 49.1 2.9 26 345-370 30-55 (218)
464 cd04164 trmE TrmE (MnmE, ThdF, 88.6 0.35 7.5E-06 45.3 2.9 22 346-367 2-23 (157)
465 PRK13826 Dtr system oriT relax 88.5 0.25 5.5E-06 61.2 2.3 99 331-434 382-493 (1102)
466 PRK13975 thymidylate kinase; P 88.4 0.36 7.8E-06 47.9 3.0 24 347-370 4-27 (196)
467 TIGR02858 spore_III_AA stage I 88.4 0.35 7.7E-06 51.0 3.0 26 346-371 112-137 (270)
468 cd01129 PulE-GspE PulE/GspE Th 88.4 0.88 1.9E-05 47.8 6.0 25 346-370 81-105 (264)
469 cd04117 Rab15 Rab15 subfamily. 88.4 0.35 7.6E-06 46.3 2.8 21 346-366 1-21 (161)
470 PRK08356 hypothetical protein; 88.3 0.36 7.8E-06 48.2 2.9 22 346-367 6-27 (195)
471 cd01868 Rab11_like Rab11-like. 88.2 0.36 7.7E-06 46.1 2.7 22 346-367 4-25 (165)
472 KOG1970|consensus 88.2 0.73 1.6E-05 52.2 5.4 29 344-372 109-137 (634)
473 cd02024 NRK1 Nicotinamide ribo 88.2 0.46 9.9E-06 47.3 3.5 23 348-370 2-24 (187)
474 PTZ00132 GTP-binding nuclear p 88.1 0.42 9.1E-06 48.3 3.3 26 344-369 8-34 (215)
475 cd01898 Obg Obg subfamily. Th 88.1 0.36 7.8E-06 46.2 2.7 21 347-367 2-22 (170)
476 cd00820 PEPCK_HprK Phosphoenol 88.1 0.37 8E-06 43.3 2.5 21 346-366 16-36 (107)
477 cd03264 ABC_drug_resistance_li 88.1 0.39 8.4E-06 48.4 3.0 24 347-370 27-50 (211)
478 cd04106 Rab23_lke Rab23-like s 88.1 0.38 8.2E-06 45.7 2.8 22 346-367 1-22 (162)
479 cd03258 ABC_MetN_methionine_tr 88.1 0.38 8.2E-06 49.3 3.0 26 345-370 31-56 (233)
480 TIGR03608 L_ocin_972_ABC putat 88.0 0.39 8.4E-06 48.1 3.0 25 346-370 25-49 (206)
481 cd04145 M_R_Ras_like M-Ras/R-R 88.0 0.39 8.5E-06 45.6 2.9 22 346-367 3-24 (164)
482 cd03269 ABC_putative_ATPase Th 88.0 0.39 8.4E-06 48.4 3.0 25 346-370 27-51 (210)
483 cd04140 ARHI_like ARHI subfami 88.0 0.41 8.8E-06 45.9 3.0 22 346-367 2-23 (165)
484 cd03301 ABC_MalK_N The N-termi 87.9 0.39 8.6E-06 48.4 3.0 25 346-370 27-51 (213)
485 cd03216 ABC_Carb_Monos_I This 87.9 0.41 8.9E-06 46.3 2.9 27 345-371 26-52 (163)
486 PF01057 Parvo_NS1: Parvovirus 87.9 0.46 9.9E-06 50.1 3.4 94 347-462 115-209 (271)
487 cd04139 RalA_RalB RalA/RalB su 87.8 0.41 8.9E-06 45.3 2.9 21 347-367 2-22 (164)
488 TIGR03878 thermo_KaiC_2 KaiC d 87.8 0.38 8.2E-06 50.4 2.8 23 345-367 36-58 (259)
489 cd03292 ABC_FtsE_transporter F 87.7 0.41 8.9E-06 48.3 2.9 26 345-370 27-52 (214)
490 PF10662 PduV-EutP: Ethanolami 87.7 0.4 8.6E-06 45.4 2.6 21 347-367 3-23 (143)
491 cd01863 Rab18 Rab18 subfamily. 87.7 0.42 9.1E-06 45.4 2.8 22 346-367 1-22 (161)
492 TIGR02528 EutP ethanolamine ut 87.7 0.38 8.2E-06 44.8 2.5 21 347-367 2-22 (142)
493 PF01583 APS_kinase: Adenylyls 87.7 0.41 8.9E-06 46.1 2.7 23 347-369 4-26 (156)
494 COG2888 Predicted Zn-ribbon RN 87.6 0.34 7.4E-06 38.1 1.7 42 277-318 15-58 (61)
495 cd03247 ABCC_cytochrome_bd The 87.6 0.44 9.4E-06 46.7 3.0 26 345-370 28-53 (178)
496 TIGR02315 ABC_phnC phosphonate 87.6 0.41 8.9E-06 49.3 2.9 25 346-370 29-53 (243)
497 cd03228 ABCC_MRP_Like The MRP 87.5 0.45 9.8E-06 46.3 3.0 26 345-370 28-53 (171)
498 cd03246 ABCC_Protease_Secretio 87.5 0.46 1E-05 46.3 3.1 25 346-370 29-53 (173)
499 PRK13808 adenylate kinase; Pro 87.5 0.49 1.1E-05 51.2 3.5 24 347-370 2-25 (333)
500 PRK13889 conjugal transfer rel 87.5 0.39 8.4E-06 59.2 3.0 84 347-433 364-457 (988)
No 1
>KOG0478|consensus
Probab=100.00 E-value=1.8e-96 Score=802.76 Aligned_cols=460 Identities=64% Similarity=0.970 Sum_probs=447.6
Q ss_pred hhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccccccceEEEecCCccccccc
Q psy17703 178 TDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLEHQIQVRPFNAKKTRNLR 257 (720)
Q Consensus 178 ~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 257 (720)
|.+.+++|...+...+++|..||+.||.+||++++.||+|+++.|+.++++++.+.++.....+.++||++|..++.++|
T Consensus 154 yi~~l~e~~~~~~~~ln~~~~hl~~~~~~Ly~ql~~ypqevip~~d~t~~~~~~e~~~~~~~~~~i~vRPfn~~~~~smr 233 (804)
T KOG0478|consen 154 YIKSLLELKELEPEFLNLDAEHLTDFDMDLYRQLVVYPQEVIPIFDETANEIVLERYVLEILEKSIKVRPFNAGKTFSMR 233 (804)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccccccHHHHHhhhhchHhhcccchHHHHHHHHhhccccchhceeEeeccCcccccccc
Confidence 66779999999999999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred cCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCCCCCCCcceeeccCCccchhhhh
Q psy17703 258 HLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRSHFTDKQLV 337 (720)
Q Consensus 258 ~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~~~~~~~~s~~~d~Q~i 337 (720)
+|+|++|+|||+++|+|+|+|++.|+|+.++|+|..|++++.+++.+|++.+|..|++|+..+.|.+.|++|.|.|+|.+
T Consensus 234 ~lNp~dIDkLisI~GmViRss~vipem~~afFrC~vC~~~~~ve~drg~i~eP~~C~~C~~~~~~~Lihnrs~F~dkQvi 313 (804)
T KOG0478|consen 234 NLNPNDIDKLISISGMVIRSSEVIPEMVEAFFRCSVCGHEIAVESDRGRIKEPMLCKECGTTNSFQLLHNRSEFADKQVI 313 (804)
T ss_pred cCChhhhhheEEeeeEEEecCCCCHHHHhHhhhhhhcCceEEEEeecCccCCCcccccccCcccceeehhhhhhccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCC--------------------------------------------------------------------------
Q psy17703 338 RLQETP-------------------------------------------------------------------------- 343 (720)
Q Consensus 338 klQE~p-------------------------------------------------------------------------- 343 (720)
|+||.|
T Consensus 314 klqEspd~~p~g~tPhtv~v~~~~dLVD~v~pGDrv~VTGi~ra~p~r~np~~r~vkSvyktyldvvh~rk~s~~rl~~~ 393 (804)
T KOG0478|consen 314 KLQESPDDMPEGSTPHTVSVVLHNDLVDKVRPGDRVEVTGILRATPVRVNPRMRMVKSVYKTYLDVVHIRKASMKRLEGS 393 (804)
T ss_pred eeeeccccCcCCCCCceEEEEEehhhhhccCCCCeEEEEEEEEeEEeccCcchhhHHHHHHHHhHhhhhhhhhhhhcccc
Confidence 999998
Q ss_pred -------------------------------------------------------------------CCccEEEEcCCCC
Q psy17703 344 -------------------------------------------------------------------AEINILLCGDPGT 356 (720)
Q Consensus 344 -------------------------------------------------------------------g~i~vLL~G~PGt 356 (720)
|+|||||+|||||
T Consensus 394 d~~d~~~~~~~~~~e~i~elskrpdiy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGt 473 (804)
T KOG0478|consen 394 DERDVDEVRRIEDLEKIQELSKRPDIYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGT 473 (804)
T ss_pred ccccccccccHHHHHHHHHHhcCccHHHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCc
Confidence 6799999999999
Q ss_pred HHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhc
Q psy17703 357 SKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQ 436 (720)
Q Consensus 357 GKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~ 436 (720)
|||||++|+++++||++|++|++++++|+|+++++|+.+++|+++.|+|+++|+|||||||||||+.+.|+.|||+||||
T Consensus 474 sKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQ 553 (804)
T KOG0478|consen 474 SKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQ 553 (804)
T ss_pred CHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHHHhhc--------
Q psy17703 437 TLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL-------- 508 (720)
Q Consensus 437 ~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i-------- 508 (720)
+++|+|||++++||+|++|+|++||.+++||+.+++.+|++|||+|||||||+|.+.|++++..|++|+.|+
T Consensus 554 TvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~ 633 (804)
T KOG0478|consen 554 TLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETG 633 (804)
T ss_pred hhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------chhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCC
Q psy17703 509 --------DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVE 580 (720)
Q Consensus 509 --------~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~ 580 (720)
+..+++.|+.||++.++|.+++|+.+.+..+|+.+|+.+...+.+..|+||+|+|+|++||||++++++.|.
T Consensus 634 ~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsEahak~r~s~~ve 713 (804)
T KOG0478|consen 634 EKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSEAHAKMRLSNRVE 713 (804)
T ss_pred ccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhhcccccc
Confidence 667899999999999999999999999999999999998877788999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHhccCCCCCcceeeeeccCCCHHHHHHHHHHHHHHHHHHHH
Q psy17703 581 VQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLELTAALKKLVIL 637 (720)
Q Consensus 581 ~~Dv~~Ai~l~~~~l~~~~~d~~~g~~d~~~~~~g~~~~~~~~~~~~~~~i~~~~~~ 637 (720)
..|+++|++|++++++++++||.+|.+|++++++|.+...++.++.+.+++.++++.
T Consensus 714 ~~dV~eA~~l~R~aL~~~a~d~~tg~vd~~~l~tg~s~~~~~~~~~~~~ai~~~l~~ 770 (804)
T KOG0478|consen 714 EIDVEEAVRLLREALKQSATDPATGKVDMDILATGNSVVSRKKVEILGGAILKMLKD 770 (804)
T ss_pred hhhHHHHHHHHHHHhcccCCCCCCCceeehhhhhcccccchHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999999999999999888888888887763
No 2
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.8e-93 Score=807.17 Aligned_cols=425 Identities=51% Similarity=0.779 Sum_probs=396.1
Q ss_pred CCCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEEEEEecccccccccccCCCCC
Q psy17703 1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDEKEHKFP 80 (720)
Q Consensus 1 VP~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 80 (720)
+|.|++||+++|++++|||+++.|||||.||||++..+.+..++ +....+|++|++++++.+.+.. .+..+|
T Consensus 189 ~p~g~~Prs~~vil~~dlv~~~~pGdrV~itGi~~~~~~~~~~~-~~~~~~~~~~~~a~~v~~~~~~-------~~~~~t 260 (682)
T COG1241 189 VPGGELPRSIEVILEDDLVDSVRPGDRVKITGVVRIVPSRSLSG-RRKGPVFEIYLEANSVEKLDKR-------EEVEIT 260 (682)
T ss_pred CCCCCCCceEEEEEecCcccccCCCCEEEEEEEEeccccccccc-ccCCceEEEEEEEEEEEeccch-------hhccCC
Confidence 69999999999999999999999999999999999988432222 3346789999999999886532 456799
Q ss_pred hHHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCcccccccccccCCcccccCCCcccCCCCCcccccc
Q psy17703 81 PERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSLRT 160 (720)
Q Consensus 81 ~~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~ 160 (720)
++++++|++++++||+|++|++|||||||||++||||||||||||+.|++++|+++|
T Consensus 261 ~ed~e~i~elak~~~i~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iR----------------------- 317 (682)
T COG1241 261 EEDEEEIKELAKRPDIYDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIR----------------------- 317 (682)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccc-----------------------
Confidence 999999999999999999999999999999999999999999999999876443211
Q ss_pred CCCCCcCCccccCCCchhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccccc
Q psy17703 161 PRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLE 240 (720)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~ 240 (720)
T Consensus 318 -------------------------------------------------------------------------------- 317 (682)
T COG1241 318 -------------------------------------------------------------------------------- 317 (682)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCCCCCCC
Q psy17703 241 HQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNH 320 (720)
Q Consensus 241 ~~~~~~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~ 320 (720)
T Consensus 318 -------------------------------------------------------------------------------- 317 (682)
T COG1241 318 -------------------------------------------------------------------------------- 317 (682)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeccCCccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceee
Q psy17703 321 CFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVL 400 (720)
Q Consensus 321 ~~~~~~~~s~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~ 400 (720)
|||||||+||||||||||++++++.+||++|++|++++++||||++++|+.+|+|++
T Consensus 318 -----------------------GDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~L 374 (682)
T COG1241 318 -----------------------GDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVL 374 (682)
T ss_pred -----------------------cceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEE
Confidence 699999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCCh
Q psy17703 401 QTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPH 480 (720)
Q Consensus 401 ~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~ 480 (720)
++|+|++||+|||||||||||+..++++|||+||||+|+|+|+|++++||+||+++||+||.+|+|+.++++.+|++||+
T Consensus 375 eaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~ 454 (682)
T COG1241 375 EAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPA 454 (682)
T ss_pred eCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccceeEEEecCCChHHHHHHHHhhc------------------------chhHHHHHHHHHHhhcCCcchHHHHHHH
Q psy17703 481 TLLSRFDLIFLLLDPQSEQFDARLARHL------------------------DITVLRDYIAYAQEHLSPTLSEEASQRL 536 (720)
Q Consensus 481 aLlsRFdli~~l~d~~~~~~d~~la~~i------------------------~~~~l~~~i~~ar~~~~p~ls~ea~~~l 536 (720)
+|||||||+|.+.|.++++.|+.++.|+ +.++||+||.|||+++.|.++++|.+.|
T Consensus 455 ~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l 534 (682)
T COG1241 455 PLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREEL 534 (682)
T ss_pred hHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHH
Confidence 9999999999999999999999999987 1457999999999999999999999999
Q ss_pred HHHHHHhhhcCC---CCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHHHHhccCCCCCcceeeeec
Q psy17703 537 IQTYVDMRKLGA---GRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILT 613 (720)
Q Consensus 537 ~~~y~~lr~~~~---~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l~~~~~d~~~g~~d~~~~~ 613 (720)
.++|+++|+.+. ....+++|+||||+++|||+|+|||++++.|+++|+.+|++|++.+++++++||++|.+|.+.+.
T Consensus 535 ~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~l~~v~~dp~~g~~d~~~~~ 614 (682)
T COG1241 535 EDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFSLKTVAVDPEKGKIDIDIIE 614 (682)
T ss_pred HHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCccCCceehhhhc
Confidence 999999998643 35679999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhC
Q psy17703 614 TGVSSAARQRQLELTAALKKLVILLG 639 (720)
Q Consensus 614 ~g~~~~~~~~~~~~~~~i~~~~~~~~ 639 (720)
+|.+.+++++.+.+...++++.++..
T Consensus 615 ~~~~~~~~~~~~~~~~~i~e~~~~~~ 640 (682)
T COG1241 615 PGKSKSKRDKIEKVLDIIKELVERSE 640 (682)
T ss_pred cCCcchhhhhHHHHHHHHHHHhhccc
Confidence 99999999999999998888777644
No 3
>KOG0482|consensus
Probab=100.00 E-value=7.3e-93 Score=749.23 Aligned_cols=448 Identities=40% Similarity=0.612 Sum_probs=393.5
Q ss_pred CCCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEEEEEecccccccccccCCCCC
Q psy17703 1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDEKEHKFP 80 (720)
Q Consensus 1 VP~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 80 (720)
||.|+||||++|+|+++++++|+|||+|.|+|||.|.|+.+++..+. .-+-.||+++..+.+++. .+.+.+++
T Consensus 244 VPvG~IPRsltv~~~ge~tr~~~PGDvV~vsGiFLP~pytGfr~~~a-GLladtYLeAh~v~~~nk------~~~~~~~~ 316 (721)
T KOG0482|consen 244 VPVGHIPRSLTVHVYGEMTRKCQPGDVVVVSGIFLPIPYTGFRALKA-GLLADTYLEAHRVVQINK------KYDNIEKT 316 (721)
T ss_pred CCCCccCceeEEEEecccceecCCCCEEEEeeeecccchhhHHHHHh-hhHHHHHHHHhhhhhhcc------cccccccc
Confidence 89999999999999999999999999999999999999988776653 235689999987776542 23445566
Q ss_pred hHHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCcccccccccccCCcccccCCCcccCCCCCcccccc
Q psy17703 81 PERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSLRT 160 (720)
Q Consensus 81 ~~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~ 160 (720)
.+...++.++.+..|+|++|++||||+||||+||||||||+|+||+.|...+
T Consensus 317 ~~~~~~~~~~~~~~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~d---------------------------- 368 (721)
T KOG0482|consen 317 GELEPEELELIAEGDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGD---------------------------- 368 (721)
T ss_pred ccccHHHHHHhhcccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCC----------------------------
Confidence 6667777777778999999999999999999999999999999999987532
Q ss_pred CCCCCcCCccccCCCchhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccccc
Q psy17703 161 PRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLE 240 (720)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~ 240 (720)
T Consensus 369 -------------------------------------------------------------------------------- 368 (721)
T KOG0482|consen 369 -------------------------------------------------------------------------------- 368 (721)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCCCCCCC
Q psy17703 241 HQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNH 320 (720)
Q Consensus 241 ~~~~~~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~ 320 (720)
||-||
T Consensus 369 -------------------------------GMKIR-------------------------------------------- 373 (721)
T KOG0482|consen 369 -------------------------------GMKIR-------------------------------------------- 373 (721)
T ss_pred -------------------------------Cceee--------------------------------------------
Confidence 33333
Q ss_pred cceeeccCCccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceee
Q psy17703 321 CFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVL 400 (720)
Q Consensus 321 ~~~~~~~~s~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~ 400 (720)
|+|||+|+||||++||||++++.+++||++|++|++||++||||++.+|+.++++++
T Consensus 374 -----------------------GdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~L 430 (721)
T KOG0482|consen 374 -----------------------GDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMVL 430 (721)
T ss_pred -----------------------cceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhhhcCCCCCeeEe
Confidence 799999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCCh
Q psy17703 401 QTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPH 480 (720)
Q Consensus 401 ~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~ 480 (720)
|.|+|+|||+|||||||||||.+.++.++||+||||+|||+|+|+.++||+||+|+|||||.+|+||+..++.+|++||+
T Consensus 431 EGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPa 510 (721)
T KOG0482|consen 431 EGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPA 510 (721)
T ss_pred ccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccceeEEEecCCChHHHHHHHHhhc-----------------chhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHh
Q psy17703 481 TLLSRFDLIFLLLDPQSEQFDARLARHL-----------------DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDM 543 (720)
Q Consensus 481 aLlsRFdli~~l~d~~~~~~d~~la~~i-----------------~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~l 543 (720)
|||||||++|++.|.++.+.|.+||+|+ +.+.+|.||++||+ ..|.++++..+.+..+|+++
T Consensus 511 ALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~-~~P~vp~~l~dyi~~AYv~~ 589 (721)
T KOG0482|consen 511 ALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKR-KNPVVPEALADYITGAYVEL 589 (721)
T ss_pred HHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 67899999999998 59999999999999999999
Q ss_pred hhcCCC-CCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHHHHhccCCCCCcceeeeeccCCCHHHHH
Q psy17703 544 RKLGAG-RGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQ 622 (720)
Q Consensus 544 r~~~~~-~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l~~~~~d~~~g~~d~~~~~~g~~~~~~~ 622 (720)
|+.+.. +.....|||.|.+++|+|.|+||||+++.|.++|+.||++||+-+- .+.... .+ -..+.++
T Consensus 590 Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~sK-~sL~~~-~~------~~~~~~~---- 657 (721)
T KOG0482|consen 590 RREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMSK-DSLYQD-DG------QKEDTSA---- 657 (721)
T ss_pred HHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhhh-cccccc-cc------cccccch----
Confidence 998754 3445678999999999999999999999999999999999997543 332211 11 1222333
Q ss_pred HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHhhcccccCCCcccccccccCChh
Q psy17703 623 RQLELTAALKKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDEFDKMSDT 676 (720)
Q Consensus 623 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~alv~ad~~~~~idE~~~l~~~ 676 (720)
...+.+.|+++..+.++ ..+++..+.+....++....+...|||||..+.-|
T Consensus 658 -~~~if~iirel~~e~g~-~~v~~s~~~~r~~~kGfs~~ql~~~i~ey~~lnVw 709 (721)
T KOG0482|consen 658 -TDAIFAIIRELAGEGGK-RCVKLSNAEQRCVRKGFSEAQLKKCIDEYAELNVW 709 (721)
T ss_pred -HHHHHHHHHHHHhhcCC-ceeeHHHHHHHHHHcCCCHHHHHHHHHHHHhcCeE
Confidence 22477888888886443 35788888888888888888888899999888554
No 4
>KOG0481|consensus
Probab=100.00 E-value=1.1e-88 Score=718.25 Aligned_cols=436 Identities=43% Similarity=0.649 Sum_probs=379.0
Q ss_pred CCCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCCC-CccccccccceeEEEEEEEEEEecccccccccccCCCC
Q psy17703 1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQV-NPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDEKEHKF 79 (720)
Q Consensus 1 VP~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 79 (720)
||.|+|||++.++|+++||+++.||.||+|+|||....... ..+.++..++...|+.|+.++...... .......|
T Consensus 228 VP~GE~PRhl~L~~dRyL~~kvvPG~RvtI~GIYsI~~~~~~~~s~k~~v~iR~PyirVvGi~~ds~~s---s~~~~~~f 304 (729)
T KOG0481|consen 228 VPVGEMPRHLQLFCDRYLTNKVVPGNRVTIMGIYSIKKFGSTSSSDKSGVGIRTPYIRVVGIQDDSEGS---SRSSATMF 304 (729)
T ss_pred CCcCcCcchhhhhhhHHHhccccCCceEEEEEEEEeeeccccCCCCccceeeecceEEEEEEEeccCCc---cccCcccC
Confidence 89999999999999999999999999999999999864332 122334566788999999997643211 11234579
Q ss_pred ChHHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCcccccccccccCCcccccCCCcccCCCCCccccc
Q psy17703 80 PPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSLR 159 (720)
Q Consensus 80 ~~~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~ 159 (720)
|+|+++.|++|++.||+|++|.+|||||||||+||||||+|+||||+.|.+|||..+|
T Consensus 305 t~eEEEeFk~la~~~d~Ye~is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lR---------------------- 362 (729)
T KOG0481|consen 305 TPEEEEEFKKLAASPDVYERISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLR---------------------- 362 (729)
T ss_pred ChhHHHHHHHHhcCccHHHHHhhccCchhcCchhHHHHHHHHhhcCccccCCCcceec----------------------
Confidence 9999999999999999999999999999999999999999999999999998653211
Q ss_pred cCCCCCcCCccccCCCchhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCccccc
Q psy17703 160 TPRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVL 239 (720)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~ 239 (720)
T Consensus 363 -------------------------------------------------------------------------------- 362 (729)
T KOG0481|consen 363 -------------------------------------------------------------------------------- 362 (729)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCCCCCC
Q psy17703 240 EHQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTN 319 (720)
Q Consensus 240 ~~~~~~~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~ 319 (720)
T Consensus 363 -------------------------------------------------------------------------------- 362 (729)
T KOG0481|consen 363 -------------------------------------------------------------------------------- 362 (729)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceeeccCCccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCcccccee
Q psy17703 320 HCFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMV 399 (720)
Q Consensus 320 ~~~~~~~~~s~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~ 399 (720)
|||||||.|||||+||||++++.+.+|-++|++|++|+++||||++.+|+.+++|.
T Consensus 363 ------------------------GDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~RD~~tReFy 418 (729)
T KOG0481|consen 363 ------------------------GDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIRDPSTREFY 418 (729)
T ss_pred ------------------------cceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEecCCcceEE
Confidence 79999999999999999999999999999999999999999999999999999999
Q ss_pred eecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCC
Q psy17703 400 LQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLP 479 (720)
Q Consensus 400 ~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~ 479 (720)
+|.|+++||||||+||||||||.++++.++||+||||+++|+|+|++++||+||+|+|||||.+|+||..|+..+|+++-
T Consensus 419 lEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~ 498 (729)
T KOG0481|consen 419 LEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFM 498 (729)
T ss_pred EecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccceeEEEecCCChHHHHHHHHhhc----------------------chhHHHHHHHHHHhhcCCcchHHHHHHHH
Q psy17703 480 HTLLSRFDLIFLLLDPQSEQFDARLARHL----------------------DITVLRDYIAYAQEHLSPTLSEEASQRLI 537 (720)
Q Consensus 480 ~aLlsRFdli~~l~d~~~~~~d~~la~~i----------------------~~~~l~~~i~~ar~~~~p~ls~ea~~~l~ 537 (720)
+.+|||||+||.+.|..+++.|..||+|+ +.+.+++||.|||.+|.|+|+++|.+.|.
T Consensus 499 ~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~ 578 (729)
T KOG0481|consen 499 PTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLS 578 (729)
T ss_pred hhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 99999999999999999999999999998 56789999999999999999999999999
Q ss_pred HHHHHhhhcC-------CCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHHHHhc-cCCCCCccee
Q psy17703 538 QTYVDMRKLG-------AGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSA-TDPLSGKIDV 609 (720)
Q Consensus 538 ~~y~~lr~~~-------~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l~~~~-~d~~~g~~d~ 609 (720)
..|+.+|... ..+..+|+|.||||+++|+++++|+|+++..+|+.|+++|++||+.+--+++ .++..|
T Consensus 579 ~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF~vSTmdAa~~g~l~g---- 654 (729)
T KOG0481|consen 579 SRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRLFQVSTMDAASQGTLAG---- 654 (729)
T ss_pred HHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhHhhHHHHhcCchhc----
Confidence 9999998753 2356799999999999999999999999999999999999999998765554 333222
Q ss_pred eeeccCCCHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHh
Q psy17703 610 SILTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLK 654 (720)
Q Consensus 610 ~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~ 654 (720)
..|..+.. ..+.+..+=+.+-.+-+.|+.+++..|+.++.
T Consensus 655 ---~egf~s~e--~~e~i~rie~qlkrr~~IG~~~se~~li~df~ 694 (729)
T KOG0481|consen 655 ---VEGFTSPE--DQEEIKRIEKQLKRRFAIGSQVSEHSLIRDFV 694 (729)
T ss_pred ---ccccCCHH--HHHHHHHHHHHHHHhcccccchhHHHHHHHHH
Confidence 13432221 12223222222223456788899988887775
No 5
>KOG0480|consensus
Probab=100.00 E-value=6.4e-88 Score=730.60 Aligned_cols=415 Identities=41% Similarity=0.648 Sum_probs=392.6
Q ss_pred HhcCCcEEEEechhHhh-hcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCc-ccccccceEEEecCCccccccccCCCcC
Q psy17703 186 FSLEDPVLNVNLAHLAK-FDSQLCQQLVCYPQEVIPILDMGVNEYFFERHP-AAVLEHQIQVRPFNAKKTRNLRHLNPED 263 (720)
Q Consensus 186 ~~~~~~~l~id~~~l~~-~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~l~~~~ 263 (720)
.-.+..+|.||+.||.. |+++|+..|..+|...++.+..|+..++....+ ...+.++++++++|+|....+|+|+++.
T Consensus 53 ~~~~~~tl~vd~~~l~~~~~~~la~~l~~~~~r~~p~m~~av~~~l~d~~~~~~~~~~~~~v~f~nlp~~~~irdlra~~ 132 (764)
T KOG0480|consen 53 DRPERNTLLVDFQHLSKQYNQNLATALEENYYRVLPCMCRAVHKVLKDWSTNSGALVKKIYVRFYNLPTRHKIRDLRAAR 132 (764)
T ss_pred ccCCCceEEEEHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHcccccccccceeEEEEEeccccccccccccHhh
Confidence 33467799999999998 999999999999999999999999998866211 2345578999999999999999999999
Q ss_pred CCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCC--CCCCCcceeeccCCccchhhhhhhhc
Q psy17703 264 IDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTN--CSTNHCFSLVHNRSHFTDKQLVRLQE 341 (720)
Q Consensus 264 i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~--C~~~~~~~~~~~~s~~~d~Q~iklQE 341 (720)
||+|++++|.|+|+++|+|++++++|.|..||..+....+.+++++|.+||+ |.++.+|.++.++|.|.|||+||+||
T Consensus 133 iG~Lv~isGtVvRts~VrPelt~~~F~C~~C~t~i~~v~q~fkYt~Pt~C~np~C~nrr~f~l~~~~s~f~D~QkIrIQE 212 (764)
T KOG0480|consen 133 IGKLVRISGTVVRTSPVRPELTKMTFLCEKCGTVIRNVEQQFKYTEPTKCPNPVCSNRRSFTLDRSSSRFLDWQKIRIQE 212 (764)
T ss_pred hcceEEEEEEEEEeecccceeeeeEEEHhhCCCeeccchhcCccCCCccCCCccccCCceeeeecccceeeeeeeeehhh
Confidence 9999999999999999999999999999999999999999999999999997 88889999999999999999999999
Q ss_pred CC------------------------------------------------------------------------------
Q psy17703 342 TP------------------------------------------------------------------------------ 343 (720)
Q Consensus 342 ~p------------------------------------------------------------------------------ 343 (720)
..
T Consensus 213 ~~~E~p~GsiPRtvdviLr~dlVe~~~pGD~v~~TGiliVvpdv~~l~~pgsk~~n~r~~~~~~~i~~lkal~Vrdl~yq 292 (764)
T KOG0480|consen 213 LQAEIPRGSIPRTVDVILRGDLVETAQPGDKVDITGILIVVPDVSQLGGPGSKAENNRGGETGDGITGLKALGVRDLTYQ 292 (764)
T ss_pred hhhhCCCCCCCceeEEEEhhhhHhhcCCCCEEEEEEEEEEecChHHhcCCccccccccCCCcccceeeehhcccccchhh
Confidence 64
Q ss_pred --------------------------------------------------------------------------------
Q psy17703 344 -------------------------------------------------------------------------------- 343 (720)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (720)
T Consensus 293 ~aFlac~~~~~~~~ee~~~~~~~~~~s~~e~~~~~em~~~~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg 372 (764)
T KOG0480|consen 293 LAFLACHVQSTLAVEEDDEEDMLNSMSSEEFAEIREMSKDENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEG 372 (764)
T ss_pred hhHhhhhcccccccchhhhHHHhhhccHHHHHHHHHHhcCchHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCC
Confidence
Q ss_pred ----CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccc
Q psy17703 344 ----AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFD 419 (720)
Q Consensus 344 ----g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEid 419 (720)
||+|||++|||||||||++++++..+||++|++|+.++++|||+++++|+.++++++++|||+|||+|||||||||
T Consensus 373 ~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFD 452 (764)
T KOG0480|consen 373 TSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFD 452 (764)
T ss_pred ccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHH
Q psy17703 420 KMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQ 499 (720)
Q Consensus 420 km~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~ 499 (720)
||+..+|.+|||+||||+|+|+|+|+.++||+|++|||||||..|+||..|++.+|+++++|++|||||+|.+.|..++.
T Consensus 453 KMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~ 532 (764)
T KOG0480|consen 453 KMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEV 532 (764)
T ss_pred ccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc-----------------chhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcC-C--CCCCcccCHHH
Q psy17703 500 FDARLARHL-----------------DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLG-A--GRGRISAYPRQ 559 (720)
Q Consensus 500 ~d~~la~~i-----------------~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~-~--~~~~~~~t~R~ 559 (720)
.|..+++|| +.+.+++||.||| +++|+++.+|.+.|+++|..+|... . ++..+++|.||
T Consensus 533 ~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR-~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRq 611 (764)
T KOG0480|consen 533 VDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYAR-NFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQ 611 (764)
T ss_pred HHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHH-hcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHH
Confidence 999999998 6789999999999 6899999999999999999999865 2 24589999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHHHHhccC
Q psy17703 560 LESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATD 601 (720)
Q Consensus 560 le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l~~~~~d 601 (720)
||+||||+||+||++++++||++|+.+|.+|+++++-....|
T Consensus 612 LESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~Siv~ve~d 653 (764)
T KOG0480|consen 612 LESLIRLSEARARVECRDEVTKEDVEEAVELLKKSIVRVEGD 653 (764)
T ss_pred HHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999998765543
No 6
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=100.00 E-value=3.9e-86 Score=761.90 Aligned_cols=458 Identities=38% Similarity=0.601 Sum_probs=402.9
Q ss_pred CCCCCCc--------------------eEEEEEEcccccccccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEE
Q psy17703 1 MPAGQTP--------------------HSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVH 60 (720)
Q Consensus 1 VP~G~~P--------------------rsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~ 60 (720)
||+|++| |+++|++++||||+|+|||||+|||||++.+.+.++..+..+++|.+|++++|
T Consensus 319 vp~G~~P~~~~~~~~~~~~~~~~~~~~rsi~v~l~dDLVD~v~PGDrV~VtGIl~~~~~~~~~~~~~~~~~~~~yl~~~~ 398 (915)
T PTZ00111 319 LNNPDKDGLDNSVDNSGLNGEIYMKDNEVINLNLYDDLIDSVKTGDRVTVVGILKVTPIRTSTTRRTLKSLYTYFVNVIH 398 (915)
T ss_pred CCCCCCCccccccccccccccccccCCceEEEEEecchhccCCCCCEEEEEEEEEeccccccccccccccccceEEEEEE
Confidence 6999999 99999999999999999999999999999887666655666789999999999
Q ss_pred EEEecccccc------cccccCCCCChHHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCccccccccc
Q psy17703 61 FRKIDATRLY------KQDEKEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETI 134 (720)
Q Consensus 61 ~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~ 134 (720)
++..+..... +....+..||++++++|++|+++|++|++|++||||+||||++||+||||+||||++|....+.
T Consensus 399 i~~~~~~~~~~~~~~~~~~~~~~~~t~ed~~~I~~ls~~p~i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~ 478 (915)
T PTZ00111 399 VKVINSTNANQPEKGLKYLGNENDFSDLQVYKILELSRNPMIYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNK 478 (915)
T ss_pred EEEeccccccccccccccccccccCCHHHHHHHHHHhcCHHHHHHHHHHhCCeEECCHHHHHHHHHHHhcCCcccccccc
Confidence 9876432111 0011334699999999999999999999999999999999999999999999999988632110
Q ss_pred ccCCcccccCCCcccCCCCCccccccCCCCCcCCccccCCCchhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhC
Q psy17703 135 SDRMSEIDLASPLNYGTPSSIGSLRTPRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCY 214 (720)
Q Consensus 135 ~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~ 214 (720)
.
T Consensus 479 ~------------------------------------------------------------------------------- 479 (915)
T PTZ00111 479 S------------------------------------------------------------------------------- 479 (915)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hhhHHHHHHHHHHHHHHhhCcccccccceEEEecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccC
Q psy17703 215 PQEVIPILDMGVNEYFFERHPAAVLEHQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVC 294 (720)
Q Consensus 215 P~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~C 294 (720)
|+.. ..+.-+
T Consensus 480 --------------------~dg~-------------------------------~~~~~i------------------- 489 (915)
T PTZ00111 480 --------------------PDAC-------------------------------YKVDNF------------------- 489 (915)
T ss_pred --------------------cccc-------------------------------cccccc-------------------
Confidence 0000 000000
Q ss_pred CceeeeeeccCcccCCccCCCCCCCCcceeeccCCccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCcc
Q psy17703 295 NYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQY 374 (720)
Q Consensus 295 g~~~~~~~~~~~~~~p~~C~~C~~~~~~~~~~~~s~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~ 374 (720)
+ |++||||+|+||||||++|+++++.+||..|
T Consensus 490 ---------R---------------------------------------gdihVLLvGDPGTGKSqLAr~Ih~lspR~~y 521 (915)
T PTZ00111 490 ---------R---------------------------------------GIINVLLCGDPGTAKSQLLHYTHLLSPRSIY 521 (915)
T ss_pred ---------c---------------------------------------CCceEEEeCCCCccHHHHHHHHHHhCCcccc
Confidence 0 7999999999999999999999999999999
Q ss_pred ccCCccccccccceee-cCccccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCce
Q psy17703 375 TSGKGSSAVGLTAYIT-KDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNART 453 (720)
Q Consensus 375 ~~g~~ss~~glta~~~-~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~ 453 (720)
++|.+++.+|+++... .+..+|+|.+++|++++|++|+||||||++|++..|.+||++||+|+++|+|+|+.++++++|
T Consensus 522 tsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~ 601 (915)
T PTZ00111 522 TSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAET 601 (915)
T ss_pred CCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCe
Confidence 9999999999999876 455678999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHHHhhc-------------------------
Q psy17703 454 SILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL------------------------- 508 (720)
Q Consensus 454 ~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i------------------------- 508 (720)
+||||+||.+|+||+.+++.+|++||++|||||||+|.+.|.++++.|+.|+.|+
T Consensus 602 rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~ 681 (915)
T PTZ00111 602 AILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTM 681 (915)
T ss_pred EEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccc
Confidence 9999999999999999999999999999999999999999999999999998765
Q ss_pred ----------------chhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcC------------------------C
Q psy17703 509 ----------------DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLG------------------------A 548 (720)
Q Consensus 509 ----------------~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~------------------------~ 548 (720)
+.++|++||+|||++++|+|+++|.+.|.++|++||+.. .
T Consensus 682 ~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (915)
T PTZ00111 682 HVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSS 761 (915)
T ss_pred cccccccccccccCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccc
Confidence 356799999999999999999999999999999999731 2
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHHHHhccCCCCCcceeeeeccCCCHHHHHHHHHHH
Q psy17703 549 GRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLELT 628 (720)
Q Consensus 549 ~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l~~~~~d~~~g~~d~~~~~~g~~~~~~~~~~~~~ 628 (720)
+.+.+++|+||||+|||||+|+|||++++.|+.+|+++|++|++.+++++++||++|.+|++++.+|.+++++++++.+.
T Consensus 762 ~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~sl~~~~~DpetG~iD~d~~~~G~s~~~r~~~~~~~ 841 (915)
T PTZ00111 762 GTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKSSTFQSLVDPTTGKIDFDQLHQGITTNKMQQLNQMY 841 (915)
T ss_pred cCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHHHHHhhhcccccCCcccceeeccCCcHHHHHHHHHHH
Confidence 23468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC---CCcchhHHHHHHHHhh
Q psy17703 629 AALKKLVILLG---PSVTVTQQKLIMDLKG 655 (720)
Q Consensus 629 ~~i~~~~~~~~---~~~~~~~~~i~~~~~~ 655 (720)
+.|++++.... ....+++++|++.+.+
T Consensus 842 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 871 (915)
T PTZ00111 842 EQVLSVLTRSSNQDSNKSLDLNEVLSLCHK 871 (915)
T ss_pred HHHHHHHHhhhccccCCceeHHHHHHHHHh
Confidence 98988875432 1235888999887743
No 7
>KOG0479|consensus
Probab=100.00 E-value=1.1e-87 Score=719.30 Aligned_cols=380 Identities=46% Similarity=0.725 Sum_probs=354.5
Q ss_pred CCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEEEEEecccccccccccCCCCCh
Q psy17703 2 PAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDEKEHKFPP 81 (720)
Q Consensus 2 P~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (720)
|+||+||||+|++++||||+|||||||.|.||||+.|...+. +..+.|+|.+.+++|.... .+....|++
T Consensus 207 PaGQLPRSVDvilddDLVD~~KPGDRV~ivG~yr~Lp~k~~g---~tsg~FRTvliaNni~~l~-------ke~~~~~t~ 276 (818)
T KOG0479|consen 207 PAGQLPRSVDVILDDDLVDRVKPGDRVNIVGIYRSLPGKSNG---NTSGTFRTVLIANNIELLS-------KEAAPDFTD 276 (818)
T ss_pred CCCCCCcceeEEecccccccCCCCCeeEEEEEEeeccCccCC---cccceeEEEEEeccHHhhc-------ccccccCCh
Confidence 999999999999999999999999999999999999975433 3467899999998886543 123567999
Q ss_pred HHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCcccccccccccCCcccccCCCcccCCCCCccccccC
Q psy17703 82 ERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSLRTP 161 (720)
Q Consensus 82 ~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~ 161 (720)
+++..|++||+..|+|++|++|+|||||||+.|||||||+|+||+.|++..|+.+|
T Consensus 277 ~Di~~i~klsk~kdiFdlLa~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlR------------------------ 332 (818)
T KOG0479|consen 277 EDIRNIKKLSKKKDIFDLLARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLR------------------------ 332 (818)
T ss_pred hhHHHHHHHHhcCCHHHHHhhccCcccccHHHHHHHHHHHHhccceeccCCCceec------------------------
Confidence 99999999999999999999999999999999999999999999999986332111
Q ss_pred CCCCcCCccccCCCchhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCccccccc
Q psy17703 162 RSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLEH 241 (720)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~~ 241 (720)
T Consensus 333 -------------------------------------------------------------------------------- 332 (818)
T KOG0479|consen 333 -------------------------------------------------------------------------------- 332 (818)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCCCCCCCc
Q psy17703 242 QIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHC 321 (720)
Q Consensus 242 ~~~~~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~ 321 (720)
T Consensus 333 -------------------------------------------------------------------------------- 332 (818)
T KOG0479|consen 333 -------------------------------------------------------------------------------- 332 (818)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeccCCccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeee
Q psy17703 322 FSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQ 401 (720)
Q Consensus 322 ~~~~~~~s~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~ 401 (720)
|||||||+|||.|+||||+||+.+.+|+.+-++|+||+++||||+++.|..+|+..+|
T Consensus 333 ----------------------GDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD~eTGERRLE 390 (818)
T KOG0479|consen 333 ----------------------GDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGERRLE 390 (818)
T ss_pred ----------------------cceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeeccccchhhhh
Confidence 7999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChh
Q psy17703 402 TGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHT 481 (720)
Q Consensus 402 ~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~a 481 (720)
+|+++|||.||+||||||||++-++.++||+||||+|+|+|+||+++||+||+|+||+||.+|+|+.+++..+|+.||++
T Consensus 391 AGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDS 470 (818)
T KOG0479|consen 391 AGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDS 470 (818)
T ss_pred cCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccceeEEEecCCChHHHHHHHHhhc-----------------------------------------------------
Q psy17703 482 LLSRFDLIFLLLDPQSEQFDARLARHL----------------------------------------------------- 508 (720)
Q Consensus 482 LlsRFdli~~l~d~~~~~~d~~la~~i----------------------------------------------------- 508 (720)
|||||||+|.+.|..+.+.|+.++.|+
T Consensus 471 LLSRFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k~ 550 (818)
T KOG0479|consen 471 LLSRFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAKQ 550 (818)
T ss_pred HHhhhcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhccccc
Confidence 999999999999999999999999987
Q ss_pred ------chhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCC---CCCcccCHHHHHHHHHHHHHHHHHcCCCCC
Q psy17703 509 ------DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAG---RGRISAYPRQLESLIRLSEAHAKMRYSETV 579 (720)
Q Consensus 509 ------~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~---~~~~~~t~R~le~lirla~A~A~l~~~~~V 579 (720)
..+++|+||.|||.+++|+|++++.+.|.+.|..+|..... ....|+|+|+||.|||||.|||++++++.|
T Consensus 551 ~~~k~lti~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V 630 (818)
T KOG0479|consen 551 QHEKLLTIDFMRKYIHYAKSRIKPKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVV 630 (818)
T ss_pred cccceeeHHHHHHHHHHHHhhcCccccHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhccee
Confidence 45789999999999999999999999999999999997653 456889999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHHHH
Q psy17703 580 EVQDVDEAWRLHREALKQ 597 (720)
Q Consensus 580 ~~~Dv~~Ai~l~~~~l~~ 597 (720)
+.+|++.|+.|++.++..
T Consensus 631 ~~~DAe~A~~Ll~fA~f~ 648 (818)
T KOG0479|consen 631 EKDDAEAAVNLLRFALFK 648 (818)
T ss_pred ehhhHHHHHHHHHHHHHh
Confidence 999999999999888744
No 8
>KOG0477|consensus
Probab=100.00 E-value=4.7e-83 Score=688.13 Aligned_cols=383 Identities=43% Similarity=0.695 Sum_probs=357.2
Q ss_pred CCCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEEEEEecccccccccccCCCCC
Q psy17703 1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDEKEHKFP 80 (720)
Q Consensus 1 VP~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 80 (720)
||+|++|||.+|++..||||+|+|||.|.|||||+. ++.++-..++++.+|.|.++++|+.+.+. .....++|
T Consensus 351 v~~GrlPRsk~vILl~DLvD~~kpGdEievTGIy~n-n~d~sLN~kngFpvfatvi~ANhV~~k~~------~~~~~~lt 423 (854)
T KOG0477|consen 351 VPAGRLPRSKEVILLADLVDSCKPGDEIEVTGIYTN-NFDGSLNTKNGFPVFATVIEANHVVKKDG------KFDVDELT 423 (854)
T ss_pred CCCCccccchhheehhhhhhhcCCCcceEEeeeecc-cccccccccCCccccceeheehhhhhhcc------ccchhHHh
Confidence 799999999999999999999999999999999984 45555555678899999999999987542 12234689
Q ss_pred hHHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCcccccccccccCCcccccCCCcccCCCCCcccccc
Q psy17703 81 PERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSLRT 160 (720)
Q Consensus 81 ~~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~ 160 (720)
+|+.+.|.+++++|.|-+++.+|||||||||++||.|++|.||||++|+...+++
T Consensus 424 ded~k~i~~lskd~~i~~rIiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khk------------------------- 478 (854)
T KOG0477|consen 424 DEDFKEIWELSKDPPIKERIIASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHK------------------------- 478 (854)
T ss_pred HHHHHHHHHHhcCccHHHHHHHhhCchhhchHHHHHHHHHHHhcCCccCCCCCce-------------------------
Confidence 9999999999999999999999999999999999999999999999998421100
Q ss_pred CCCCCcCCccccCCCchhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccccc
Q psy17703 161 PRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLE 240 (720)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~ 240 (720)
T Consensus 479 -------------------------------------------------------------------------------- 478 (854)
T KOG0477|consen 479 -------------------------------------------------------------------------------- 478 (854)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCCCCCCC
Q psy17703 241 HQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNH 320 (720)
Q Consensus 241 ~~~~~~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~ 320 (720)
+ +
T Consensus 479 ----------------------------------v----------------------------R---------------- 480 (854)
T KOG0477|consen 479 ----------------------------------V----------------------------R---------------- 480 (854)
T ss_pred ----------------------------------e----------------------------c----------------
Confidence 0 1
Q ss_pred cceeeccCCccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceee
Q psy17703 321 CFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVL 400 (720)
Q Consensus 321 ~~~~~~~~s~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~ 400 (720)
|+|||||+|||||||||+++|+++.++|+++++|.|++++|+|+++.+++.+++|++
T Consensus 481 -----------------------GDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTL 537 (854)
T KOG0477|consen 481 -----------------------GDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTL 537 (854)
T ss_pred -----------------------cceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeee
Confidence 799999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCCh
Q psy17703 401 QTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPH 480 (720)
Q Consensus 401 ~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~ 480 (720)
++|+|+|||+|||||||||||++.++..+||+||||.|+|+|+||.++|++||++|||+||.+|+||+..++.+|++|..
T Consensus 538 EaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~lte 617 (854)
T KOG0477|consen 538 EAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTE 617 (854)
T ss_pred ccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccceeEEEecCCChHHHHHHHHhhc-----------------------------chhHHHHHHHHHHhhcCCcchHH
Q psy17703 481 TLLSRFDLIFLLLDPQSEQFDARLARHL-----------------------------DITVLRDYIAYAQEHLSPTLSEE 531 (720)
Q Consensus 481 aLlsRFdli~~l~d~~~~~~d~~la~~i-----------------------------~~~~l~~~i~~ar~~~~p~ls~e 531 (720)
|++||||+.+++.|..+...|+++|+++ +.++||+||.|||.+++|+|.+-
T Consensus 618 PIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~ 697 (854)
T KOG0477|consen 618 PILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQM 697 (854)
T ss_pred chhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999765 56899999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHHH
Q psy17703 532 ASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALK 596 (720)
Q Consensus 532 a~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l~ 596 (720)
-.+.+...|.+||+.+...+++++|.|.+|+++|+++|||+|++++.|+.+|+..||+.+.+++-
T Consensus 698 d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldSfi 762 (854)
T KOG0477|consen 698 DMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDSFI 762 (854)
T ss_pred cHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877754
No 9
>smart00350 MCM minichromosome maintenance proteins.
Probab=100.00 E-value=7.6e-72 Score=633.43 Aligned_cols=389 Identities=54% Similarity=0.840 Sum_probs=346.6
Q ss_pred CCCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEEEEEeccccccccc-ccCCCC
Q psy17703 1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQD-EKEHKF 79 (720)
Q Consensus 1 VP~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~ 79 (720)
+|.|++||+++|++++||||+|+|||+|+|||||++.+...........+.|.+|++++++++.+........ .....|
T Consensus 97 ~p~G~~Prsi~v~l~~dLvd~~~PGD~V~i~Gi~~~~~~~~~~~~~~~~~~~~~~l~a~~i~~~~~~~~~~~~~~~~~~~ 176 (509)
T smart00350 97 VPAGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNIPYGFKLNTVKGLPVFATYIEANHVRKLDYKRSFEDCSFSVQSL 176 (509)
T ss_pred CCCCCCCcEEEEEEcccccCcccCCCEEEEEEEEEeeccccccccCCCcceeeEEEEEeEEEEccccccccccccccccC
Confidence 6899999999999999999999999999999999987632211112223458999999999886533211110 012369
Q ss_pred ChHHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCcccccccccccCCcccccCCCcccCCCCCccccc
Q psy17703 80 PPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSLR 159 (720)
Q Consensus 80 ~~~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~ 159 (720)
|++++++|++++++|++|++|++||||+||||+++|+||+|+||||+.+...++++
T Consensus 177 ~~~~~~~i~~~~~~~~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~------------------------ 232 (509)
T smart00350 177 SDEEEEEIRKLSKDPDIYERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMK------------------------ 232 (509)
T ss_pred CHHHHHHHHHHhcCHHHHHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCcc------------------------
Confidence 99999999999999999999999999999999999999999999999876432110
Q ss_pred cCCCCCcCCccccCCCchhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCccccc
Q psy17703 160 TPRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVL 239 (720)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~ 239 (720)
T Consensus 233 -------------------------------------------------------------------------------- 232 (509)
T smart00350 233 -------------------------------------------------------------------------------- 232 (509)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCCCCCC
Q psy17703 240 EHQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTN 319 (720)
Q Consensus 240 ~~~~~~~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~ 319 (720)
+ +
T Consensus 233 -----------------------------------~----------------------------r--------------- 234 (509)
T smart00350 233 -----------------------------------I----------------------------R--------------- 234 (509)
T ss_pred -----------------------------------c----------------------------c---------------
Confidence 0 0
Q ss_pred CcceeeccCCccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCcccccee
Q psy17703 320 HCFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMV 399 (720)
Q Consensus 320 ~~~~~~~~~s~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~ 399 (720)
+++||||+|+||||||++|+++++.+|+..|++|.+.+.+|+++...+++.+++|.
T Consensus 235 ------------------------~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~ 290 (509)
T smart00350 235 ------------------------GDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFT 290 (509)
T ss_pred ------------------------ccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEE
Confidence 68999999999999999999999999999999999889999999888888889999
Q ss_pred eecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCC
Q psy17703 400 LQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLP 479 (720)
Q Consensus 400 ~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~ 479 (720)
+++|++++|++|+||||||++|++..|.+|+++||+++++++|+|+.+++|++|++|||+||.+|+|++.+++.+|++||
T Consensus 291 ~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~ 370 (509)
T smart00350 291 LEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLP 370 (509)
T ss_pred ecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccceeEEEecCCChHHHHHHHHhhc-------------------chhHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Q psy17703 480 HTLLSRFDLIFLLLDPQSEQFDARLARHL-------------------DITVLRDYIAYAQEHLSPTLSEEASQRLIQTY 540 (720)
Q Consensus 480 ~aLlsRFdli~~l~d~~~~~~d~~la~~i-------------------~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y 540 (720)
++++|||||+|.+.|+++++.|..|+.|+ +.+.|++||.|||+++.|.+++++.+.|.++|
T Consensus 371 ~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y 450 (509)
T smart00350 371 APILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAY 450 (509)
T ss_pred hHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999998874 45789999999999899999999999999999
Q ss_pred HHhhhcCCCC---CCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHH
Q psy17703 541 VDMRKLGAGR---GRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREAL 595 (720)
Q Consensus 541 ~~lr~~~~~~---~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l 595 (720)
.++|..+... ..+++|+|++++|+|+|+|+|+|++++.|+++|+.+|++|+++++
T Consensus 451 ~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~s~ 508 (509)
T smart00350 451 VDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRESI 508 (509)
T ss_pred HHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHHhh
Confidence 9999865432 468899999999999999999999999999999999999998774
No 10
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=100.00 E-value=3.6e-68 Score=572.31 Aligned_cols=253 Identities=59% Similarity=0.881 Sum_probs=216.3
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD 423 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~ 423 (720)
+++||||+||||||||+|++++++++||++|++|++++.+|+|+++.+++.+++|.+++|++++||+|||||||||+|++
T Consensus 56 ~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~ 135 (331)
T PF00493_consen 56 GNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKE 135 (331)
T ss_dssp -S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--C
T ss_pred cccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHH
Q psy17703 424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDAR 503 (720)
Q Consensus 424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~ 503 (720)
+++.+||++||+|+++++|+|+.+++|++|+|+||+||..|+|+..+++.+|+++|++|+|||||+|.+.|+++++.|+.
T Consensus 136 ~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~ 215 (331)
T PF00493_consen 136 DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDER 215 (331)
T ss_dssp HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHH
T ss_pred hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc----------------------chhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCC-CCCCcccCHHHH
Q psy17703 504 LARHL----------------------DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGA-GRGRISAYPRQL 560 (720)
Q Consensus 504 la~~i----------------------~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~-~~~~~~~t~R~l 560 (720)
++.|+ +.+++++||.|||+++.|.+++++.+.|.++|+++|+... .....++|+|+|
T Consensus 216 la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~L 295 (331)
T PF00493_consen 216 LAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQL 295 (331)
T ss_dssp HHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCC
T ss_pred cceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhH
Confidence 99876 3567899999999889999999999999999999999763 356788999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHHH
Q psy17703 561 ESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALK 596 (720)
Q Consensus 561 e~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l~ 596 (720)
|+|+|||+|+|||++++.|+++|+.+|++|++.++|
T Consensus 296 eSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~~Sl~ 331 (331)
T PF00493_consen 296 ESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFEESLK 331 (331)
T ss_dssp CHHHHHHHHHHHCTTSSECSHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhccCceeHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999885
No 11
>KOG0482|consensus
Probab=100.00 E-value=1.7e-47 Score=405.16 Aligned_cols=406 Identities=31% Similarity=0.445 Sum_probs=264.5
Q ss_pred hHHHHHHHhcCCcEEEEechhHhhhc--HHHHHHHHhChhhHHHHHHHHHHHHHHhhC----------------------
Q psy17703 179 DRRIRQIFSLEDPVLNVNLAHLAKFD--SQLCQQLVCYPQEVIPILDMGVNEYFFERH---------------------- 234 (720)
Q Consensus 179 ~~~~r~~~~~~~~~l~id~~~l~~~d--~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~---------------------- 234 (720)
-..++.+...+..++.||++|++.|| .+|...+..+-..+..+|..++.+++.+..
T Consensus 34 ~~~L~eia~Re~~ai~vdldDi~~~d~~~~l~~~i~~Na~ry~~lf~~~vdellp~~~~~~~~~~d~lDv~~~qR~~~~~ 113 (721)
T KOG0482|consen 34 MNQLQEIANREQNAIEVDLDDIAEYDDATELVGAIESNARRYVELFSDAVDELLPEPTGEIPYGDDVLDVYMEQRLMRNE 113 (721)
T ss_pred HHHHHHHhcccceeEEEehHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCccHHHHHHHHHHHhcc
Confidence 33456666778889999999999998 478899999999999999999988754321
Q ss_pred ---cccc---------cc--cceEEEecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeee
Q psy17703 235 ---PAAV---------LE--HQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTV 300 (720)
Q Consensus 235 ---~~~~---------~~--~~~~~~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~ 300 (720)
|... +. .++..++....+...+|++++++||+||+|+|||+|+|+|+|.+.+++|.|..||+|+++
T Consensus 114 ~~~p~~~~~~~~fP~~l~rryelyfk~~~~~kp~svR~vka~~iG~LvtvrGIVTR~S~VKP~m~VatYtCd~CGaE~yQ 193 (721)
T KOG0482|consen 114 TRDPELEDKREQFPSELLRRYELYFKPLSNNKPYSVREVKADHIGSLVTVRGIVTRVSDVKPSMVVATYTCDQCGAETYQ 193 (721)
T ss_pred ccCccccchhhcCCHHHhhhheeeecccccCCccchhhhhhhhccceEEEEEEEEeccccccceEEEEEecccccHhhhc
Confidence 1100 00 123333444456789999999999999999999999999999999999999999999999
Q ss_pred eeccCcccCCccCCC--CCCC---CcceeeccCCccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccc
Q psy17703 301 EIDRGRIHEPTLCTN--CSTN---HCFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYT 375 (720)
Q Consensus 301 ~~~~~~~~~p~~C~~--C~~~---~~~~~~~~~s~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~ 375 (720)
++.+..|.++..||+ |..+ +.+.++...|+|+++|++|+||..+++++ ...||+...
T Consensus 194 eV~s~~F~pl~~CpS~eC~~n~~~G~L~lqtRgSKFikfQe~kmQEls~qVPv------------------G~IPRsltv 255 (721)
T KOG0482|consen 194 EVNSRTFTPLSECPSEECRTNKAGGRLYLQTRGSKFIKFQEVKMQELSDQVPV------------------GHIPRSLTV 255 (721)
T ss_pred cccCccccchhhCChHHhhhcccCCeEEEEecccccchhhhhhHHHHhccCCC------------------CccCceeEE
Confidence 999999999999997 8754 67999999999999999999999866644 112442211
Q ss_pred c--------CCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceE-eeeccCeE
Q psy17703 376 S--------GKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTL-SIAKAGII 446 (720)
Q Consensus 376 ~--------g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~v-si~k~g~~ 446 (720)
. ......+..++.+..-+.+|-..+.+|.+. + ..+|-..+ .+
T Consensus 256 ~~~ge~tr~~~PGDvV~vsGiFLP~pytGfr~~~aGLla--d---------------------tYLeAh~v~~~------ 306 (721)
T KOG0482|consen 256 HVYGEMTRKCQPGDVVVVSGIFLPIPYTGFRALKAGLLA--D---------------------TYLEAHRVVQI------ 306 (721)
T ss_pred EEecccceecCCCCEEEEeeeecccchhhHHHHHhhhHH--H---------------------HHHHHhhhhhh------
Confidence 0 011222222222233333332222322211 0 01111111 11
Q ss_pred EeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCC
Q psy17703 447 CQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSP 526 (720)
Q Consensus 447 ~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p 526 (720)
|-.+ | .+.......++..+.++.. + -|-..|+. +.|
T Consensus 307 -------------nk~~-----------------------~-~~~~~~~~~~~~~~~~~~~-d-----~yekLa~S-iAP 342 (721)
T KOG0482|consen 307 -------------NKKY-----------------------D-NIEKTGELEPEELELIAEG-D-----FYEKLAAS-IAP 342 (721)
T ss_pred -------------cccc-----------------------c-cccccccccHHHHHHhhcc-c-----HHHHHHHh-hch
Confidence 1000 0 0011111111111111110 0 01122232 445
Q ss_pred cc--hHHHHHHHHHHHHHhhhcCCCC---CCcccCHHHHHHHHHHHHHHHHHcCC-CCCCHHhHHHHHHHHHHHHHHhc-
Q psy17703 527 TL--SEEASQRLIQTYVDMRKLGAGR---GRISAYPRQLESLIRLSEAHAKMRYS-ETVEVQDVDEAWRLHREALKQSA- 599 (720)
Q Consensus 527 ~l--s~ea~~~l~~~y~~lr~~~~~~---~~~~~t~R~le~lirla~A~A~l~~~-~~V~~~Dv~~Ai~l~~~~l~~~~- 599 (720)
.+ .++.+++|.-..+ ++..+ .++. +|+. +....+|...|.+ +.|+.+.
T Consensus 343 EIyGheDVKKaLLLlLV----Ggvd~~~~dGMK------------------IRGdINicLmGDPGVAKS---QLLkyi~r 397 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLV----GGVDKSPGDGMK------------------IRGDINICLMGDPGVAKS---QLLKYISR 397 (721)
T ss_pred hhccchHHHHHHHHHhh----CCCCCCCCCCce------------------eecceeEEecCCCchhHH---HHHHHHHh
Confidence 44 3444444442222 11111 1111 1111 2345688888887 4445442
Q ss_pred cCCCCCcceeeeeccCCCHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHhhcccccCCCcccccccccCChhhHH
Q psy17703 600 TDPLSGKIDVSILTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDEFDKMSDTTRS 679 (720)
Q Consensus 600 ~d~~~g~~d~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~alv~ad~~~~~idE~~~l~~~~r~ 679 (720)
..|+ ++|+||.++|.. +|++++.+ +.-+..+. + .+|++++||+|+|||||||||.+.+|+
T Consensus 398 lapR------gvYTTGrGSSGV----GLTAAVmk----DpvTgEM~----L--EGGALVLAD~GICCIDEfDKM~e~DRt 457 (721)
T KOG0482|consen 398 LAPR------GVYTTGRGSSGV----GLTAAVMK----DPVTGEMV----L--EGGALVLADGGICCIDEFDKMDESDRT 457 (721)
T ss_pred cCcc------cceecCCCCCcc----ccchhhhc----CCCCCeeE----e--ccceEEEccCceEeehhhhhhhhhhhH
Confidence 3444 789999999998 47766542 22111221 1 289999999999999999999999999
Q ss_pred HHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCCCCC
Q psy17703 680 ILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT 720 (720)
Q Consensus 680 ~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~~~~ 720 (720)
+|||+||||+|||+||||+++|||||||||||||.|||||+
T Consensus 458 AIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnp 498 (721)
T KOG0482|consen 458 AIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNP 498 (721)
T ss_pred HHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCc
Confidence 99999999999999999999999999999999999999995
No 12
>KOG0481|consensus
Probab=100.00 E-value=2.7e-46 Score=396.44 Aligned_cols=393 Identities=31% Similarity=0.456 Sum_probs=266.2
Q ss_pred hhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhC---cc-cccccceEEEecCCccc
Q psy17703 178 TDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERH---PA-AVLEHQIQVRPFNAKKT 253 (720)
Q Consensus 178 ~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~---~~-~~~~~~~~~~~~~~~~~ 253 (720)
|...++.=+..++++|+|+++||.+||.+|++.|...|.++|++||+|++++..+-. |. ....+++|+.+....+.
T Consensus 47 Yrd~L~~N~~~~~y~L~v~le~L~~fdedl~~~L~~~P~~~lp~fEeAa~~Vad~i~~~~~~~E~~~~d~Qv~L~sda~p 126 (729)
T KOG0481|consen 47 YRDQLKRNYNLGEYSLEVELEDLISFDEDLADKLSKQPADHLPLFEEAAKEVADEITRPRPSGEEVLHDIQVLLTSDANP 126 (729)
T ss_pred hHHHHHhcccccceEEEEEHHHhhccchHHHHHHHhChHhHHHHHHHHHHHHHhhhcCCCcCCCccceeeEEEEecCCCc
Confidence 444456667788999999999999999999999999999999999999998875432 22 23346799999988889
Q ss_pred cccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeec-cC--cccCCccCC-------CCCCCCcce
Q psy17703 254 RNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEID-RG--RIHEPTLCT-------NCSTNHCFS 323 (720)
Q Consensus 254 ~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~-~~--~~~~p~~C~-------~C~~~~~~~ 323 (720)
.++|+|+++++.|||.++||++.+|.|+.+.+....+|++|.+....... .| .+..|+.|. .|.- ++|.
T Consensus 127 ~~iR~l~s~~vsklVki~GIiiaAS~v~~kat~l~l~CrnC~~t~~~~~~~pgl~g~~lPR~C~~~~~~k~~Cp~-DPyi 205 (729)
T KOG0481|consen 127 ISIRQLKSDHVSKLVKISGIIIAASAVSAKATRLSLVCRNCRHTRPNVIMRPGLEGYALPRKCDTPQAGKPKCPL-DPYI 205 (729)
T ss_pred ccHhHhhhHhhhhheeeccEEEEeeeeeecceEEEEEeccccccccceecCCCccccccccccCCcccCCCCCCC-CCEE
Confidence 99999999999999999999999999999999999999999998855433 22 578899996 4775 7999
Q ss_pred eeccCCccchhhhhhhhcCCCCc-------cEEEEcCCCCHHHHHHHHHHhhC-CC------Ccccc---CCcccccccc
Q psy17703 324 LVHNRSHFTDKQLVRLQETPAEI-------NILLCGDPGTSKSQLLSYVYDLV-PR------SQYTS---GKGSSAVGLT 386 (720)
Q Consensus 324 ~~~~~s~~~d~Q~iklQE~pg~i-------~vLL~G~PGtGKS~ll~~va~~~-pr------~~~~~---g~~ss~~glt 386 (720)
+.+++|+|+|+|.+|+||.|.++ |++|.-| |++.+.. |. ++|.- +..++. +-.
T Consensus 206 i~pdks~~vD~QtLKLQE~pe~VP~GE~PRhl~L~~d---------RyL~~kvvPG~RvtI~GIYsI~~~~~~~~s-~k~ 275 (729)
T KOG0481|consen 206 IMPDKSKCVDQQTLKLQELPEDVPVGEMPRHLQLFCD---------RYLTNKVVPGNRVTIMGIYSIKKFGSTSSS-DKS 275 (729)
T ss_pred EcccccceeehhheehhhCcccCCcCcCcchhhhhhh---------HHHhccccCCceEEEEEEEEeeeccccCCC-Ccc
Confidence 99999999999999999999776 4544444 4444433 32 12211 111111 111
Q ss_pred ceeecCccccceeeecceeeecCC-ce----ee-cc---ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEe
Q psy17703 387 AYITKDPETRQMVLQTGALVLADS-GV----CC-ID---EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILA 457 (720)
Q Consensus 387 a~~~~~~~~~~~~~~~G~l~lad~-gI----~~-ID---Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iia 457 (720)
+--.+.++.+..-++ .-.++ |. .| -| ||-+++. ...+++.+. -+|+..
T Consensus 276 ~v~iR~PyirVvGi~----~ds~~ss~~~~~~ft~eEEEeFk~la~--~~d~Ye~is---~sIAPS-------------- 332 (729)
T KOG0481|consen 276 GVGIRTPYIRVVGIQ----DDSEGSSRSSATMFTPEEEEEFKKLAA--SPDVYERIS---KSIAPS-------------- 332 (729)
T ss_pred ceeeecceEEEEEEE----eccCCccccCcccCChhHHHHHHHHhc--CccHHHHHh---hccCch--------------
Confidence 111122221111111 00000 10 11 11 2222221 112333321 222210
Q ss_pred cccCCCCCCCCCccccc------ccCCChhhhccceeEEEec-CCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchH
Q psy17703 458 AANPCDSQWNTSKTIID------NIRLPHTLLSRFDLIFLLL-DPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSE 530 (720)
Q Consensus 458 aaNp~~g~~~~~~~~~~------~~~l~~aLlsRFdli~~l~-d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ 530 (720)
.+|.-|-.+.+.+ .-.||+.+..|-|+.+++. ||.... .
T Consensus 333 ----IfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAK----------------------S-------- 378 (729)
T KOG0481|consen 333 ----IFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAK----------------------S-------- 378 (729)
T ss_pred ----hcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhH----------------------H--------
Confidence 1111111111111 1158888888999877765 554321 0
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHHHHhccCCCCCcceee
Q psy17703 531 EASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVS 610 (720)
Q Consensus 531 ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l~~~~~d~~~g~~d~~ 610 (720)
||... + +-..++.
T Consensus 379 ----------------------------QlLKF-------------------------------v--------EkvsPIa 391 (729)
T KOG0481|consen 379 ----------------------------QLLKF-------------------------------V--------EKVSPIA 391 (729)
T ss_pred ----------------------------HHHHH-------------------------------H--------HhcCceE
Confidence 11000 0 0123568
Q ss_pred eeccCCCHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHhhcccccCCCcccccccccCChhhHHHHHHhhhcceE
Q psy17703 611 ILTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTL 690 (720)
Q Consensus 611 ~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~ 690 (720)
+|++|+++|+++ |++.+. ++..+-.|- ..+|++++||+|++||||||||.+++|.+|||+||||+|
T Consensus 392 VYTSGKGSSAAG----LTASV~----RD~~tReFy------lEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTI 457 (729)
T KOG0481|consen 392 VYTSGKGSSAAG----LTASVI----RDPSTREFY------LEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTI 457 (729)
T ss_pred EEecCCCccccc----ceeeEE----ecCCcceEE------EecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhH
Confidence 999999999873 554332 222221221 138999999999999999999999999999999999999
Q ss_pred EeeecceeEEEcccceEEeecCCCCCCCC
Q psy17703 691 SIAKAGIICQLNARTSILAAANPCDSQWN 719 (720)
Q Consensus 691 ~i~k~g~~~~l~~~~~~~~~~~p~~~~~~ 719 (720)
||+||||+++||+||||||||||.+||||
T Consensus 458 SIAKAGITT~LNSRtSVLAAANpvfGRyD 486 (729)
T KOG0481|consen 458 SIAKAGITTTLNSRTSVLAAANPVFGRYD 486 (729)
T ss_pred HHhhhcceeeecchhhhhhhcCCcccccc
Confidence 99999999999999999999999999998
No 13
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.1e-46 Score=421.42 Aligned_cols=407 Identities=32% Similarity=0.461 Sum_probs=263.0
Q ss_pred CCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccccc-cceEEEecCCccccccccCCCcCCCce
Q psy17703 189 EDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLE-HQIQVRPFNAKKTRNLRHLNPEDIDQL 267 (720)
Q Consensus 189 ~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~l~~~~i~~l 267 (720)
...++.||+.|+..||++|+..++.+|.++++.|+.++.++....+|+.... ..++++|.|.|....+|+|+++|+|||
T Consensus 29 ~~~s~~v~~~~~~~~~~~la~~l~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~l~s~~igkL 108 (682)
T COG1241 29 INRSLEVDLSDLEEYDPELAGLLLENPEEIIPLFEKALDEIALLLFPEVDRSLKKIHVRFKNLPNRLSIRELRSEHIGKL 108 (682)
T ss_pred cceEEEEEhHHhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHhcCccccccccceEEEecCCcCCcChhhCchhhCCcE
Confidence 3449999999999999999999999999999999999999988777666554 589999999999999999999999999
Q ss_pred EEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCCCCC--CCcceeeccCCccchhhhhhhhcCCCC
Q psy17703 268 ITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCST--NHCFSLVHNRSHFTDKQLVRLQETPAE 345 (720)
Q Consensus 268 v~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~--~~~~~~~~~~s~~~d~Q~iklQE~pg~ 345 (720)
|+|+|+|+|+|.|+|++++++|.|.+||++..+.+....+.+|..|++|.. .++|.++++.|.|.|||++++||.|+.
T Consensus 109 V~v~GiV~r~s~v~p~~~~~~~~C~~Cg~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~s~f~d~Q~vkiQE~pe~ 188 (682)
T COG1241 109 VSVEGIVTRASEVRPRLKKAVFECPKCGREVEVEQSEFRVEPPRECENCGKFGKGPLKLVPRKSEFIDFQKVKIQELPEL 188 (682)
T ss_pred EEEEEEEEecccccceeEEEEEEcCCCCCEEEEEeccccccCCccCCCccccCCCceEEecCcceeeeceEEEEecCccc
Confidence 999999999999999999999999999999999998888899999999932 357999999999999999999999976
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHH
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTT 425 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~ 425 (720)
+ |||. .|+..-. -+-... .-...||.-+.. .||+.+-+-..++.
T Consensus 189 ~------p~g~------------~Prs~~v--------il~~dl-------v~~~~pGdrV~i-tGi~~~~~~~~~~~-- 232 (682)
T COG1241 189 V------PGGE------------LPRSIEV--------ILEDDL-------VDSVRPGDRVKI-TGVVRIVPSRSLSG-- 232 (682)
T ss_pred C------CCCC------------CCceEEE--------EEecCc-------ccccCCCCEEEE-EEEEeccccccccc--
Confidence 5 2221 2322110 000000 001122321111 23333322211111
Q ss_pred HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHHH
Q psy17703 426 RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLA 505 (720)
Q Consensus 426 ~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la 505 (720)
.....+ +.++.-+|..... .. ++ .+. ..+.+++.-..++
T Consensus 233 ---------~~~~~~------------~~~~~~a~~v~~~-------------~~----~~--~~~-~t~ed~e~i~ela 271 (682)
T COG1241 233 ---------RRKGPV------------FEIYLEANSVEKL-------------DK----RE--EVE-ITEEDEEEIKELA 271 (682)
T ss_pred ---------ccCCce------------EEEEEEEEEEEec-------------cc----hh--hcc-CCHHHHHHHHHHh
Confidence 000000 0001111111000 00 00 000 0111222222233
Q ss_pred hhcchhHHHHHHHHHHhhcCCcc--hHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcC-CCCCCHH
Q psy17703 506 RHLDITVLRDYIAYAQEHLSPTL--SEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRY-SETVEVQ 582 (720)
Q Consensus 506 ~~i~~~~l~~~i~~ar~~~~p~l--s~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~-~~~V~~~ 582 (720)
+.-+ ..... + ..+.|.+ .++..++|.-. |- ++..+ ..+- ..++|+ .+..-.+
T Consensus 272 k~~~--i~~~l---~-~SiaPsIyG~e~VKkAilLq---Lf-gGv~k-~~~~--------------g~~iRGDInILLvG 326 (682)
T COG1241 272 KRPD--IYDIL---I-KSIAPSIYGHEDVKKAILLQ---LF-GGVKK-NLPD--------------GTRIRGDIHILLVG 326 (682)
T ss_pred cCCc--HHHHH---H-HHhcccccCcHHHHHHHHHH---hc-CCCcc-cCCC--------------CcccccceeEEEcC
Confidence 2111 11110 1 1133333 22233333211 11 11110 0000 001221 1334557
Q ss_pred hHHHHHHHHHHHHHHhccCCCCCcceeeeeccCCCHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHhhcccccC
Q psy17703 583 DVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLELTAALKKLVILLGP-SVTVTQQKLIMDLKGALVLAD 661 (720)
Q Consensus 583 Dv~~Ai~l~~~~l~~~~~d~~~g~~d~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~i~~~~~~alv~ad 661 (720)
|...|.+-+ |+... ...+.+++++|+++++. +|++++.+ +... .|.+ .+|++++||
T Consensus 327 DPgtaKSql---Lk~v~-----~~aPr~vytsgkgss~~----GLTAav~r---d~~tge~~L--------eaGALVlAD 383 (682)
T COG1241 327 DPGTAKSQL---LKYVA-----KLAPRGVYTSGKGSSAA----GLTAAVVR---DKVTGEWVL--------EAGALVLAD 383 (682)
T ss_pred CCchhHHHH---HHHHH-----hhCCceEEEcccccccc----CceeEEEE---ccCCCeEEE--------eCCEEEEec
Confidence 888887743 33332 12334899999999987 46654432 2111 1332 289999999
Q ss_pred CCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCCCCC
Q psy17703 662 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT 720 (720)
Q Consensus 662 ~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~~~~ 720 (720)
.|+|||||||||++++|.+|||+||||+|+|+||||+++|||||||||||||++||||.
T Consensus 384 ~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~ 442 (682)
T COG1241 384 GGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDP 442 (682)
T ss_pred CCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999984
No 14
>KOG0477|consensus
Probab=100.00 E-value=1.8e-43 Score=382.26 Aligned_cols=398 Identities=29% Similarity=0.412 Sum_probs=270.8
Q ss_pred chhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccccc-cceEEEecCCcccc
Q psy17703 176 IRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLE-HQIQVRPFNAKKTR 254 (720)
Q Consensus 176 ~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 254 (720)
..+..+++.|+..+..++.|++.||..-...|+..+-+.|.+++.+|+.++.++....+|.+... .++|+|..++|-..
T Consensus 179 ~~~~~ri~~~~~~n~esl~v~y~dla~~~~~la~fl~~ap~e~l~I~dr~a~~~v~~~~p~yeri~~~ihvris~lP~~~ 258 (854)
T KOG0477|consen 179 NVYIERIRRMCEENRESLEVNYTDLAESEHVLAYFLPEAPEEMLEIFDRAALEVVLLHYPNYERIHNEIHVRISDLPVCE 258 (854)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhCCChhhcccceeeeeecCCccc
Confidence 45577799999999999999999999999999999999999999999999999999999887654 58999999999999
Q ss_pred ccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeecc-CcccCCccCCCCCCCCcceeeccCCccch
Q psy17703 255 NLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDR-GRIHEPTLCTNCSTNHCFSLVHNRSHFTD 333 (720)
Q Consensus 255 ~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~-~~~~~p~~C~~C~~~~~~~~~~~~s~~~d 333 (720)
.+|.++..|+|+|+.+.|.|||.|-|.|++....|.|.+||+.....+.. .....|..||+|..+++|.+..+...|.+
T Consensus 259 ~lr~lRq~Hln~Lvr~~GvVtr~tgV~pql~~vky~C~KC~~vlgPF~qs~n~evkp~~C~~cqSkGpf~vn~e~Tvyrn 338 (854)
T KOG0477|consen 259 SLRSLRQLHLNQLVRTSGVVTRRTGVFPQLSVVKYDCLKCGFVLGPFVQSSNSEVKPGSCPECQSKGPFEVNVEETVYRN 338 (854)
T ss_pred cHHHHHHhccCceEEeeeEEEecceeehhhHHHhhhHHhhCCccCceeeccCceeCCCCCccccCCCCCccchhhhhhcc
Confidence 99999999999999999999999999999999999999999887655543 35577999999999999999999999999
Q ss_pred hhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCcee
Q psy17703 334 KQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVC 413 (720)
Q Consensus 334 ~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~ 413 (720)
||++++||.||.+ ++| .+||+.- -|+
T Consensus 339 YQritiQEspg~v------~~G------------rlPRsk~------------------------------------vIL 364 (854)
T KOG0477|consen 339 YQRITIQESPGTV------PAG------------RLPRSKE------------------------------------VIL 364 (854)
T ss_pred cceeeeccCCCcC------CCC------------ccccchh------------------------------------hee
Confidence 9999999999876 222 2344210 011
Q ss_pred eccccccCChHHHHHHHHHHHhceEeeeccCeE-----Eeec--CceEEEec---ccCCCCCCCCCcccccccCCChhhh
Q psy17703 414 CIDEFDKMSDTTRSILHEVMEQQTLSIAKAGII-----CQLN--ARTSILAA---ANPCDSQWNTSKTIIDNIRLPHTLL 483 (720)
Q Consensus 414 ~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~-----~~l~--a~~~iiaa---aNp~~g~~~~~~~~~~~~~l~~aLl 483 (720)
+=|=+|...+-+ +-.+ .|+. ..|| ..|-++|+ +|..-
T Consensus 365 l~DLvD~~kpGd---------Eiev----TGIy~nn~d~sLN~kngFpvfatvi~ANhV~-------------------- 411 (854)
T KOG0477|consen 365 LADLVDSCKPGD---------EIEV----TGIYTNNFDGSLNTKNGFPVFATVIEANHVV-------------------- 411 (854)
T ss_pred hhhhhhhcCCCc---------ceEE----eeeecccccccccccCCccccceeheehhhh--------------------
Confidence 001111111100 0000 1110 0110 00111111 11110
Q ss_pred ccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHH
Q psy17703 484 SRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESL 563 (720)
Q Consensus 484 sRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~l 563 (720)
|=|--+.+....++ ..+.+-.+.| .|.+.+-...-|. . ++.. ...
T Consensus 412 -~k~~~~~~~~ltde-------------d~k~i~~lsk---d~~i~~rIiaSia----------P---sIyG-----h~~ 456 (854)
T KOG0477|consen 412 -KKDGKFDVDELTDE-------------DFKEIWELSK---DPPIKERIIASIA----------P---SIYG-----HED 456 (854)
T ss_pred -hhccccchhHHhHH-------------HHHHHHHHhc---CccHHHHHHHhhC----------c---hhhc-----hHH
Confidence 00000111111111 1122222221 1111111000000 0 0000 122
Q ss_pred HHHHHHHHHHcCC--------------CCCCHHhHHHHHHHHHHHHHHhc-cCCCCCcceeeeeccCCCHHHHHHHHHHH
Q psy17703 564 IRLSEAHAKMRYS--------------ETVEVQDVDEAWRLHREALKQSA-TDPLSGKIDVSILTTGVSSAARQRQLELT 628 (720)
Q Consensus 564 irla~A~A~l~~~--------------~~V~~~Dv~~Ai~l~~~~l~~~~-~d~~~g~~d~~~~~~g~~~~~~~~~~~~~ 628 (720)
++.|-|+|-..+. +.+.-+|...|.+- .||.+. +.|+ .+++||.++|++ +|+
T Consensus 457 VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQ---FLKY~eK~s~R------AV~tTGqGASav----GLT 523 (854)
T KOG0477|consen 457 VKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQ---FLKYAEKTSPR------AVFTTGQGASAV----GLT 523 (854)
T ss_pred HHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHH---HHHHHHhcCcc------eeEeccCCcccc----cee
Confidence 3444455444332 22234677778773 344443 3333 789999999987 355
Q ss_pred HHHHHHHHHhC--CCcchhHHHHHHHHhhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccce
Q psy17703 629 AALKKLVILLG--PSVTVTQQKLIMDLKGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTS 706 (720)
Q Consensus 629 ~~i~~~~~~~~--~~~~~~~~~i~~~~~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~ 706 (720)
..+.+ ++ ..|.++ +|++++||+|+|||||||||.+++|++||||||||.|||+||||+++|+|||+
T Consensus 524 a~v~K----dPvtrEWTLE--------aGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArct 591 (854)
T KOG0477|consen 524 AYVRK----DPVTREWTLE--------AGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCT 591 (854)
T ss_pred EEEee----CCccceeeec--------cCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhh
Confidence 54432 22 223332 89999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCCCC
Q psy17703 707 ILAAANPCDSQWNT 720 (720)
Q Consensus 707 ~~~~~~p~~~~~~~ 720 (720)
|||||||++||||.
T Consensus 592 vIAAanPigGRY~~ 605 (854)
T KOG0477|consen 592 VIAAANPIGGRYNP 605 (854)
T ss_pred hheecCCCCCccCC
Confidence 99999999999984
No 15
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=100.00 E-value=1e-39 Score=377.57 Aligned_cols=172 Identities=27% Similarity=0.476 Sum_probs=152.6
Q ss_pred chhhHHHHHHHhcC----------CcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHh----hCccccccc
Q psy17703 176 IRTDRRIRQIFSLE----------DPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFE----RHPAAVLEH 241 (720)
Q Consensus 176 ~~~~~~~r~~~~~~----------~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~----~~~~~~~~~ 241 (720)
..|..+++.|...+ ..+|.||+.||..||++||++|+++|.++|+.|++|+++++.+ .+++..+..
T Consensus 121 ~~y~~~~~~~~~~~~~~~~~~~~~~~sl~Vd~~~l~~fd~~L~~~l~~~P~e~i~~~e~~l~~~~~~~~~~~~~~~~~~~ 200 (915)
T PTZ00111 121 LYYLWKLMNFIKENLRDHSTGYSRILPFEVDLMHVYSFDKVLYKLLVTFPADCIAELDKVLVKLFNELLSKHYSDLSLEN 200 (915)
T ss_pred HHHHHHHHHHHHHhhhcccccccCCceEEEEHHHHHhhhHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhhcccccchhcc
Confidence 45677788887654 4799999999999999999999999999999999999887543 333333332
Q ss_pred ---ceEEEecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeeccc-----------CCceeeeeeccCcc
Q psy17703 242 ---QIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIV-----------CNYSTTVEIDRGRI 307 (720)
Q Consensus 242 ---~~~~~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~-----------Cg~~~~~~~~~~~~ 307 (720)
.++||++|++....+|+|+++++||||+|+|||+|+|+|+|+++.++|+|.. |+++....+.+|.+
T Consensus 201 ~~~~~~vr~~n~~~~~~iR~L~s~~i~kLV~v~GiV~r~S~v~P~l~~a~f~C~~~~~~~~~~~~~C~~~~~~~~~~g~~ 280 (915)
T PTZ00111 201 NSFFPRARLMNKPVSDCVGNLEPSMADSLVQFSGTVVRQTWIVPEITMACFRCRGQKKIGLNDYQPCTCEHYEYVIQGEV 280 (915)
T ss_pred ccceEEEEEeCCCCCCCcccCCHhhCCCeEEEEEEEEEccCcchhhEEEEEECCCCCcccCCccccCCccccccccCCcc
Confidence 4799999999999999999999999999999999999999999999999985 88887777788899
Q ss_pred cCCccCCCCCCCCcceeeccCCccchhhhhhhhcCCCCcc
Q psy17703 308 HEPTLCTNCSTNHCFSLVHNRSHFTDKQLVRLQETPAEIN 347 (720)
Q Consensus 308 ~~p~~C~~C~~~~~~~~~~~~s~~~d~Q~iklQE~pg~i~ 347 (720)
.+|..||+|++.++|.+.+++|.|+|||++++||+|++++
T Consensus 281 ~~P~~C~~C~~~~~f~l~~~~s~f~D~Q~IklQE~pe~vp 320 (915)
T PTZ00111 281 NEPLLCNECNSKYTFELNHNMCVYSTKKIVKLLQSNSSLN 320 (915)
T ss_pred cCCCCCCCCCCCCCeEEccCccEEEeeeEEEEeeCcccCC
Confidence 9999999999999999999999999999999999998774
No 16
>KOG0478|consensus
Probab=100.00 E-value=7.4e-39 Score=351.16 Aligned_cols=175 Identities=46% Similarity=0.687 Sum_probs=154.1
Q ss_pred CCCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEEEEEeccccccccc--ccCCC
Q psy17703 1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQD--EKEHK 78 (720)
Q Consensus 1 VP~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~ 78 (720)
+|.|+||++|+|++++||||+|+|||||+||||||+.|.+.|++++.++++|++|++++|+++.+..+++..+ ..+..
T Consensus 322 ~p~g~tPhtv~v~~~~dLVD~v~pGDrv~VTGi~ra~p~r~np~~r~vkSvyktyldvvh~rk~s~~rl~~~d~~d~~~~ 401 (804)
T KOG0478|consen 322 MPEGSTPHTVSVVLHNDLVDKVRPGDRVEVTGILRATPVRVNPRMRMVKSVYKTYLDVVHIRKASMKRLEGSDERDVDEV 401 (804)
T ss_pred CcCCCCCceEEEEEehhhhhccCCCCeEEEEEEEEeEEeccCcchhhHHHHHHHHhHhhhhhhhhhhhcccccccccccc
Confidence 6999999999999999999999999999999999999999999999999999999999999998877766332 33567
Q ss_pred CChHHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCcccccccccccCCcccccCCCcccCCCCCcccc
Q psy17703 79 FPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSL 158 (720)
Q Consensus 79 ~~~~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~ 158 (720)
++.+++++|.+++++||+|++|++|||||||||||||||||||||||+.|.+..++++|+ +|+ .|+|||||+.|+
T Consensus 402 ~~~~~~e~i~elskrpdiy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~-~IN---ILL~GDPGtsKS- 476 (804)
T KOG0478|consen 402 RRIEDLEKIQELSKRPDIYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRG-DIN---ILLVGDPGTSKS- 476 (804)
T ss_pred ccHHHHHHHHHHhcCccHHHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccc-cce---EEEecCCCcCHH-
Confidence 899999999999999999999999999999999999999999999999999988776664 444 899999999764
Q ss_pred ccCCCCCcCCccccCCCchhhHHHHHHHhcCCcEE
Q psy17703 159 RTPRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVL 193 (720)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l 193 (720)
+-..|-+....|.+|++|+.+=
T Consensus 477 -------------qlLqyv~~l~pRg~yTSGkGsS 498 (804)
T KOG0478|consen 477 -------------QLLQYCHRLLPRGVYTSGKGSS 498 (804)
T ss_pred -------------HHHHHHHHhCCcceeecCCccc
Confidence 4555666677777777776643
No 17
>KOG0479|consensus
Probab=100.00 E-value=1.7e-35 Score=318.53 Aligned_cols=404 Identities=28% Similarity=0.365 Sum_probs=251.3
Q ss_pred hhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccccc-cceEEEecC--Cccc
Q psy17703 177 RTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLE-HQIQVRPFN--AKKT 253 (720)
Q Consensus 177 ~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~--~~~~ 253 (720)
-|.+++..|...++..|.||.+||..|+++++.-|+.+|.+.++.|++|+.++.....+.+... ..++|-|.. -.+.
T Consensus 29 iy~e~i~~~~~~~~~RlIvNv~dlr~~~~~~A~glL~~p~~~~~~f~~AL~~~~~~~d~~~~~~~~~~~vGfeGsFG~~h 108 (818)
T KOG0479|consen 29 IYQEAIKKLLNEGQHRLIVNVDDLREFNRERASGLLENPAEEVPPFEDALTDAASRIDDVYAKVKELFFVGFEGSFGNRH 108 (818)
T ss_pred HHHHHHHHhhhcCcceEEEEhHHHHHhHHHHHHhHhhChHhhhhhHHHHHHHHHhcccchhhhhccceEEEeeeeccccc
Confidence 3456788899999999999999999999999999999999999999999999876544444333 244554432 2345
Q ss_pred cccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccC----cccCCccCC-CCCCCCcceeeccC
Q psy17703 254 RNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRG----RIHEPTLCT-NCSTNHCFSLVHNR 328 (720)
Q Consensus 254 ~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~----~~~~p~~C~-~C~~~~~~~~~~~~ 328 (720)
.+-|.|.+.++|++|+++|||+++|-|+|++.+.+.-|+.-+...+.....- .+..+..-| .-...+++.....-
T Consensus 109 v~PRtL~s~~lg~mVcvEGIVTkcSlvRPKvvkSVHYcpaT~~~~~r~Y~D~T~~~~~p~~svYPT~De~gN~L~TEyGl 188 (818)
T KOG0479|consen 109 VNPRTLTSVYLGKMVCVEGIVTKCSLVRPKVVKSVHYCPATNKFHERDYRDATMLTTLPTGSVYPTRDEDGNLLETEYGL 188 (818)
T ss_pred cChhhHHHHHhCceEEeeeeeeeeeeechhhhheeeeccccCcchhhhhcchheecccccCCcCCccCCCCCeeeEeecc
Confidence 6789999999999999999999999999999999999999887765543221 112222222 23334678888899
Q ss_pred CccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeec
Q psy17703 329 SHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLA 408 (720)
Q Consensus 329 s~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~la 408 (720)
|.|.|+|.+.+||.|..- |||- +||++-.
T Consensus 189 S~ykDHQtitiQEmPE~A------PaGQ------------LPRSVDv--------------------------------- 217 (818)
T KOG0479|consen 189 SVYKDHQTITIQEMPEKA------PAGQ------------LPRSVDV--------------------------------- 217 (818)
T ss_pred eeeecccEEEeeeccccC------CCCC------------CCcceeE---------------------------------
Confidence 999999999999999742 5542 5664321
Q ss_pred CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeec--------CceEEEecccCCCCCCCCCcccccccCCCh
Q psy17703 409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLN--------ARTSILAAANPCDSQWNTSKTIIDNIRLPH 480 (720)
Q Consensus 409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~--------a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~ 480 (720)
|+=.|=.|+..|.++ +.| -|+...|| ..|.-+--+|...-- .+ =+.
T Consensus 218 ---ilddDLVD~~KPGDR-----------V~i--vG~yr~Lp~k~~g~tsg~FRTvliaNni~~l---~k-------e~~ 271 (818)
T KOG0479|consen 218 ---ILDDDLVDRVKPGDR-----------VNI--VGIYRSLPGKSNGNTSGTFRTVLIANNIELL---SK-------EAA 271 (818)
T ss_pred ---EecccccccCCCCCe-----------eEE--EEEEeeccCccCCcccceeEEEEEeccHHhh---cc-------ccc
Confidence 000111233333221 111 12222221 112211112211100 00 001
Q ss_pred hhhccceeEEEecCCChHHHHHHHHhhcch-hHHHHHHHHHHhhcCCcc--hHHHHHHHHHHHH-----HhhhcCCCCCC
Q psy17703 481 TLLSRFDLIFLLLDPQSEQFDARLARHLDI-TVLRDYIAYAQEHLSPTL--SEEASQRLIQTYV-----DMRKLGAGRGR 552 (720)
Q Consensus 481 aLlsRFdli~~l~d~~~~~~d~~la~~i~~-~~l~~~i~~ar~~~~p~l--s~ea~~~l~~~y~-----~lr~~~~~~~~ 552 (720)
+.+.++|+ ..-++|++.-+. ++| ++ .+.|.+ .+...++|.-... .|+.+..-+++
T Consensus 272 ~~~t~~Di----------~~i~klsk~kdiFdlL------a~-SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGD 334 (818)
T KOG0479|consen 272 PDFTDEDI----------RNIKKLSKKKDIFDLL------AR-SLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGD 334 (818)
T ss_pred ccCChhhH----------HHHHHHHhcCCHHHHH------hh-ccCcccccHHHHHHHHHHHHhccceeccCCCceeccc
Confidence 11112220 111223321111 111 11 234444 1222233321111 01111111222
Q ss_pred cccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHH-HHHHHHHHhccCCCCCcceeeeeccCCCHHHHHHHHHHHHHH
Q psy17703 553 ISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWR-LHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLELTAAL 631 (720)
Q Consensus 553 ~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~-l~~~~l~~~~~d~~~g~~d~~~~~~g~~~~~~~~~~~~~~~i 631 (720)
+ +....+|...|.+ |+++-|. +.| ..+-+||.++|.+ +|++++
T Consensus 335 I-----------------------NiLlvGDPSvAKSQLLRyVLn---tAp------lAI~TTGRGSSGV----GLTAAV 378 (818)
T KOG0479|consen 335 I-----------------------NILLVGDPSVAKSQLLRYVLN---TAP------LAIATTGRGSSGV----GLTAAV 378 (818)
T ss_pred e-----------------------eEEEecCchHHHHHHHHHHHh---ccc------ccccccCCCCCCc----cceeEE
Confidence 2 2334577777876 2333222 233 3667899998887 466655
Q ss_pred HHHHHHhCCCcchhHHHHHHHHhhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeec
Q psy17703 632 KKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAA 711 (720)
Q Consensus 632 ~~~~~~~~~~~~~~~~~i~~~~~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~ 711 (720)
.. +...| -. ....|+++++|.|+.||||||||++-+|.+|||+||||++.|+||||+++|||||||||||
T Consensus 379 Tt---D~eTG--ER-----RLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAA 448 (818)
T KOG0479|consen 379 TT---DQETG--ER-----RLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAA 448 (818)
T ss_pred ee---ccccc--hh-----hhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeec
Confidence 42 11111 11 1238999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy17703 712 NPCDSQWNT 720 (720)
Q Consensus 712 ~p~~~~~~~ 720 (720)
||+|||||.
T Consensus 449 NPvyG~Yd~ 457 (818)
T KOG0479|consen 449 NPVYGQYDQ 457 (818)
T ss_pred CccccccCC
Confidence 999999984
No 18
>KOG0480|consensus
Probab=99.95 E-value=1.4e-28 Score=268.76 Aligned_cols=174 Identities=28% Similarity=0.429 Sum_probs=136.6
Q ss_pred CCCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCC---CCcccccc-----c-cceeEEEEEEEEEEecccccc-
Q psy17703 1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQ---VNPRMRSV-----K-SVYKTHIDVVHFRKIDATRLY- 70 (720)
Q Consensus 1 VP~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~---~~~~~~~~-----~-~~~~~~i~~~~~~~~~~~~~~- 70 (720)
.|.|+|||+++|++.+|||++|+|||+|++|||+.+.|.- +.+..+.. . ..+-+++.+++++..+....+
T Consensus 217 ~p~GsiPRtvdviLr~dlVe~~~pGD~v~~TGiliVvpdv~~l~~pgsk~~n~r~~~~~~~i~~lkal~Vrdl~yq~aFl 296 (764)
T KOG0480|consen 217 IPRGSIPRTVDVILRGDLVETAQPGDKVDITGILIVVPDVSQLGGPGSKAENNRGGETGDGITGLKALGVRDLTYQLAFL 296 (764)
T ss_pred CCCCCCCceeEEEEhhhhHhhcCCCCEEEEEEEEEEecChHHhcCCccccccccCCCcccceeeehhcccccchhhhhHh
Confidence 5999999999999999999999999999999999998841 11222211 1 156788888888765432100
Q ss_pred --------cccc-----cCCCCChHHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCcccccccccccC
Q psy17703 71 --------KQDE-----KEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDR 137 (720)
Q Consensus 71 --------~~~~-----~~~~~~~~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~~~~ 137 (720)
..++ --..++.+|...+++++.++|+|.+|+.|+||+|||||.||+||||+||||+.|.-.+++++|
T Consensus 297 ac~~~~~~~~ee~~~~~~~~~~s~~e~~~~~em~~~~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lR 376 (764)
T KOG0480|consen 297 ACHVQSTLAVEEDDEEDMLNSMSSEEFAEIREMSKDENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLR 376 (764)
T ss_pred hhhcccccccchhhhHHHhhhccHHHHHHHHHHhcCchHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCcccc
Confidence 0011 113589999999999999999999999999999999999999999999999999998899999
Q ss_pred CcccccCCCcccCCCCCccccccCCCCCcCCccccCCCchhhHHHHHHHhcCCcE
Q psy17703 138 MSEIDLASPLNYGTPSSIGSLRTPRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPV 192 (720)
Q Consensus 138 ~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 192 (720)
+ |++ ++++||||++|+ |...+-..-.+|.+|+.|+.+
T Consensus 377 G---Din-v~iVGDPgt~KS--------------QfLk~v~~fsPR~vYtsGkaS 413 (764)
T KOG0480|consen 377 G---DIN-VCIVGDPGTGKS--------------QFLKAVCAFSPRSVYTSGKAS 413 (764)
T ss_pred C---Cce-EEEeCCCCccHH--------------HHHHHHhccCCcceEecCccc
Confidence 8 665 899999999774 333344445578888887653
No 19
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.95 E-value=2.4e-27 Score=269.66 Aligned_cols=93 Identities=39% Similarity=0.737 Sum_probs=88.9
Q ss_pred cccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCC--CCCCCcceeeccCCcc
Q psy17703 254 RNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTN--CSTNHCFSLVHNRSHF 331 (720)
Q Consensus 254 ~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~--C~~~~~~~~~~~~s~~ 331 (720)
.++|+|+++++||||+|+|+|+|+|.|+|++++++|+|..||++.++.+..+.+.+|..||+ |++.++|.++++.|+|
T Consensus 3 ~~~r~l~s~~igklV~v~GiV~r~s~v~p~~~~~~f~C~~C~~~~~~~~~~~~~~~p~~C~~~~C~~~~~f~l~~~~s~~ 82 (509)
T smart00350 3 SSIRELRADHLGKLVRVSGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQSGRETEPTVCPPRECQSPTPFSLNHERSTF 82 (509)
T ss_pred CCcccCCHhHCCCEEEEEEEEEEccCceEEEEEEEEEecCCCCEEeEEecCCcccCCCcCCCCcCCCCCceEeccCCCeE
Confidence 57899999999999999999999999999999999999999999999988889999999998 9998899999999999
Q ss_pred chhhhhhhhcCCCCc
Q psy17703 332 TDKQLVRLQETPAEI 346 (720)
Q Consensus 332 ~d~Q~iklQE~pg~i 346 (720)
.|||++++||.|+++
T Consensus 83 ~D~Q~I~iQE~~e~~ 97 (509)
T smart00350 83 IDFQKIKLQESPEEV 97 (509)
T ss_pred EEEEEEEEEcCcccC
Confidence 999999999998765
No 20
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.92 E-value=2.5e-24 Score=241.99 Aligned_cols=236 Identities=22% Similarity=0.260 Sum_probs=171.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccc----cCCccccccccce---ee------------cC-ccccceeeecc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYT----SGKGSSAVGLTAY---IT------------KD-PETRQMVLQTG 403 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~----~g~~ss~~glta~---~~------------~~-~~~~~~~~~~G 403 (720)
++.|++|+||||+|||++++.++.++|+.... .....+..|.... .. .. ...|.+..+||
T Consensus 210 ~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG 289 (499)
T TIGR00368 210 GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPG 289 (499)
T ss_pred CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccchh
Confidence 67899999999999999999999988764221 1111111121110 00 00 01233457899
Q ss_pred eeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcc----------cc
Q psy17703 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKT----------II 473 (720)
Q Consensus 404 ~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~----------~~ 473 (720)
.+.+|++|++||||+++++++.++.|+++||++.+++.+.|....+|++|.+|||+||++++|..... ..
T Consensus 290 ~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~ 369 (499)
T TIGR00368 290 EISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISR 369 (499)
T ss_pred hhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999766543211 12
Q ss_pred cccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhc------------CCc-----------chH
Q psy17703 474 DNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHL------------SPT-----------LSE 530 (720)
Q Consensus 474 ~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~------------~p~-----------ls~ 530 (720)
+..+++.+|+||||+++.+.+.+..+... -....+...+++.+..||+.. +.. +++
T Consensus 370 y~~~is~pllDR~dl~~~~~~~~~~~l~~-~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~ 448 (499)
T TIGR00368 370 YWNKLSGPFLDRIDLSVEVPLLPPEKLLS-TGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSA 448 (499)
T ss_pred HhhhccHhHHhhCCEEEEEcCCCHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCH
Confidence 23479999999999999999887654422 112235566777777665432 111 233
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703 531 EASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL 590 (720)
Q Consensus 531 ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l 590 (720)
++.+.+...|.. ...|.|....++|+|+++|+|++++.|+.+|+.+|+++
T Consensus 449 ~~~~~l~~a~~~----------~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 449 IDANDLEGALNK----------LGLSSRATHRILKVARTIADLKEEKNISREHLAEAIEY 498 (499)
T ss_pred HHHHHHHHHHHh----------cCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhc
Confidence 333333333321 23567999999999999999999999999999999864
No 21
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.5e-25 Score=239.90 Aligned_cols=260 Identities=23% Similarity=0.285 Sum_probs=188.4
Q ss_pred cchhhhhhhhcCC---------CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecC--------c
Q psy17703 331 FTDKQLVRLQETP---------AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKD--------P 393 (720)
Q Consensus 331 ~~d~Q~iklQE~p---------g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~--------~ 393 (720)
..|+..|+-||.. |.+|+|++||||||||++++.+..++|+.......+.+.+...+....+ +
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rP 254 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRP 254 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCC
Confidence 5688888888865 8999999999999999999999999998754333333222222111000 0
Q ss_pred -------------cccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEeccc
Q psy17703 394 -------------ETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAAN 460 (720)
Q Consensus 394 -------------~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaN 460 (720)
..|....+||.+.+||+||+|+||+....++..++|++-||.+.+.|++++...++|++|+++||||
T Consensus 255 Fr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmN 334 (490)
T COG0606 255 FRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMN 334 (490)
T ss_pred ccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcC
Confidence 1122457899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccc----------cccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcC---Cc
Q psy17703 461 PCDSQWNTSKTII----------DNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLS---PT 527 (720)
Q Consensus 461 p~~g~~~~~~~~~----------~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~---p~ 527 (720)
|+.+++.....-. +.-+|+.+|++|||+.+.+..++-.+.-...-.......+++.+++||.... -.
T Consensus 335 pcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~ 414 (490)
T COG0606 335 PCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAKAREAQIARAGR 414 (490)
T ss_pred CCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhc
Confidence 9999987754432 2237999999999999999877533322111112235567777777764210 11
Q ss_pred --chHHHHHHHHHHHHHhhhcCCC-----CCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703 528 --LSEEASQRLIQTYVDMRKLGAG-----RGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL 590 (720)
Q Consensus 528 --ls~ea~~~l~~~y~~lr~~~~~-----~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l 590 (720)
.+.+......+.|+.+-..+.. -..+.+|.|.+..++|+|+.+|++.+.+.+...|+.+|++.
T Consensus 415 ~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTiADL~g~~~i~~~hl~eAi~y 484 (490)
T COG0606 415 IGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTIADLEGSEQIERSHLAEAISY 484 (490)
T ss_pred cCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhhhcccCcchhhHHHHHHHHhh
Confidence 1223333333334433222110 12345677999999999999999999999999999999875
No 22
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.92 E-value=3e-24 Score=240.12 Aligned_cols=238 Identities=23% Similarity=0.312 Sum_probs=167.1
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcc----ccccccc---eeecCc-------------cccceeeecc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGS----SAVGLTA---YITKDP-------------ETRQMVLQTG 403 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~s----s~~glta---~~~~~~-------------~~~~~~~~~G 403 (720)
++.|++|+|+||+|||+|++.++.++|+.......+. +.+|... ...+.+ ..|.+..+||
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG 288 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPG 288 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhh
Confidence 6689999999999999999999999876422111111 1111100 000001 1234568899
Q ss_pred eeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcc---c-----ccc
Q psy17703 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKT---I-----IDN 475 (720)
Q Consensus 404 ~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~---~-----~~~ 475 (720)
.+.+||+|++|+||++.+++..++.|+++||++.+++.+.|...++|++|.+|||+||++++|.+... . .+.
T Consensus 289 ~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~ 368 (506)
T PRK09862 289 EISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYL 368 (506)
T ss_pred HhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999766543211 1 112
Q ss_pred cCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhh-------cCC-----------cchHHHHHHHH
Q psy17703 476 IRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEH-------LSP-----------TLSEEASQRLI 537 (720)
Q Consensus 476 ~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~-------~~p-----------~ls~ea~~~l~ 537 (720)
-+|+.+++||||+.+.+.+++.++.........+...+++.+..|++. ++. .+++++...+.
T Consensus 369 ~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~ 448 (506)
T PRK09862 369 NRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLE 448 (506)
T ss_pred hhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHH
Confidence 379999999999999999876543321111122333444444433321 111 12333333333
Q ss_pred HHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703 538 QTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLH 591 (720)
Q Consensus 538 ~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~ 591 (720)
.++. ...+|+|....++|+|+++|.|++++.|+.+|+.+|+.+.
T Consensus 449 ~~~~----------~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~yR 492 (506)
T PRK09862 449 ETLI----------HLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSYR 492 (506)
T ss_pred HHHH----------HcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Confidence 3322 2335689999999999999999999999999999998864
No 23
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.90 E-value=5.1e-23 Score=237.08 Aligned_cols=227 Identities=24% Similarity=0.284 Sum_probs=180.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCc-cccCC-cccccccccee--ecCccccceeeecceeeecCCceeeccccccC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQ-YTSGK-GSSAVGLTAYI--TKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~-~~~g~-~ss~~glta~~--~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
-||||.|+||||||++++++++.+|+.. |.... +.+.-.+.+.. ......+.+.+++|.+..|++|++||||++++
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 4999999999999999999999998641 22111 11111222221 11123466788999999999999999999999
Q ss_pred ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHH
Q psy17703 422 SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFD 501 (720)
Q Consensus 422 ~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d 501 (720)
++..|+.|+++|+++.+++.+.|....+|++|.+|||+||..+. -.|+++|++||++.+.+.+++....+
T Consensus 97 ~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~----------g~L~~~LldRf~l~v~~~~~~~~~er 166 (589)
T TIGR02031 97 DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGG----------GGLPDHLLDRLALHVSLEDVASQDLR 166 (589)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcccc----------CCCCHHHHHhccCeeecCCCCCHHHH
Confidence 99999999999999999999999999999999999999998521 15999999999999988877665543
Q ss_pred HHHHhh----------cchhHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703 502 ARLARH----------LDITVLRDYIAYAQEHLSP-TLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH 570 (720)
Q Consensus 502 ~~la~~----------i~~~~l~~~i~~ar~~~~p-~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~ 570 (720)
..+.++ .....++++|..|++.+.. .+++++.+.|.+.+..+... ++|....++|+|+|+
T Consensus 167 ~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~---------s~Ra~i~~~r~ArA~ 237 (589)
T TIGR02031 167 VEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGIS---------GHRADLFAVRAAKAH 237 (589)
T ss_pred HHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCC---------CccHHHHHHHHHHHH
Confidence 333332 2456788899999986543 57899999999888765532 259999999999999
Q ss_pred HHHcCCCCCCHHhHHHHHHHH
Q psy17703 571 AKMRYSETVEVQDVDEAWRLH 591 (720)
Q Consensus 571 A~l~~~~~V~~~Dv~~Ai~l~ 591 (720)
|.+++++.|+++|+.+|..+.
T Consensus 238 Aal~gr~~V~~~Dv~~a~~lv 258 (589)
T TIGR02031 238 AALHGRTEVTEEDLKLAVELV 258 (589)
T ss_pred HHHhCCCCCCHHHHHHHHHHH
Confidence 999999999999999999974
No 24
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.90 E-value=2.6e-22 Score=214.86 Aligned_cols=227 Identities=21% Similarity=0.240 Sum_probs=174.8
Q ss_pred CCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcc---------------------------------cccccccee
Q psy17703 343 PAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGS---------------------------------SAVGLTAYI 389 (720)
Q Consensus 343 pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~s---------------------------------s~~glta~~ 389 (720)
++..|+||.|+||||||++++.+++++|+.....+... +.-.+.++.
T Consensus 27 ~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~ 106 (334)
T PRK13407 27 PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGAL 106 (334)
T ss_pred cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecch
Confidence 45579999999999999999999999986332222100 000011110
Q ss_pred ecC--ccccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCC
Q psy17703 390 TKD--PETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWN 467 (720)
Q Consensus 390 ~~~--~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~ 467 (720)
.-+ -.+|.+.+++|.+..+++|++|+||++.++++.|+.|+++|+++.+++.+.|....++++|.++|++||..+
T Consensus 107 d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~--- 183 (334)
T PRK13407 107 DIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEG--- 183 (334)
T ss_pred hhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccC---
Confidence 000 114678899999999999999999999999999999999999999999999999999999999999999754
Q ss_pred CCcccccccCCChhhhccceeEEEecCCCh-HHHHHHHHhhcc---------------hhHHHHHHHHHHhhcC-CcchH
Q psy17703 468 TSKTIIDNIRLPHTLLSRFDLIFLLLDPQS-EQFDARLARHLD---------------ITVLRDYIAYAQEHLS-PTLSE 530 (720)
Q Consensus 468 ~~~~~~~~~~l~~aLlsRFdli~~l~d~~~-~~~d~~la~~i~---------------~~~l~~~i~~ar~~~~-p~ls~ 530 (720)
.++++|++||.+.+.+.++.+ ++..+.+.+... .....+.|..+++.+. -.+++
T Consensus 184 ---------~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~ 254 (334)
T PRK13407 184 ---------ELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPN 254 (334)
T ss_pred ---------CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCH
Confidence 389999999999999988776 444444443221 1123466777777654 35788
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703 531 EASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL 590 (720)
Q Consensus 531 ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l 590 (720)
+..+++.+.....|.. ++|.-..+++.|+|+|.+++++.|+.+|+..+..+
T Consensus 255 ~~~~yi~~l~~~~~~~---------s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~ 305 (334)
T PRK13407 255 TVLHDCAALCIALGSD---------GLRGELTLLRAARALAAFEGAEAVGRSHLRSVATM 305 (334)
T ss_pred HHHHHHHHHHHHHCCC---------CchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHH
Confidence 8888888887777653 35988999999999999999999999999888654
No 25
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.89 E-value=3.5e-22 Score=232.73 Aligned_cols=227 Identities=22% Similarity=0.277 Sum_probs=176.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCC-----------------------------------ccccccccce
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGK-----------------------------------GSSAVGLTAY 388 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~-----------------------------------~ss~~glta~ 388 (720)
...+|||.|+||||||++++++++++|......|. +.+...+.+.
T Consensus 24 ~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~ 103 (633)
T TIGR02442 24 RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGS 103 (633)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCc
Confidence 34579999999999999999999999732111000 0000001111
Q ss_pred e--ecCccccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCC
Q psy17703 389 I--TKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQW 466 (720)
Q Consensus 389 ~--~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~ 466 (720)
. ...-..+.+.+++|.+..|++|++||||+++|+++.|+.|+++|+++.+.+.+.|....+++++.+|||+||..|
T Consensus 104 ~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg-- 181 (633)
T TIGR02442 104 LDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEG-- 181 (633)
T ss_pred ccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCC--
Confidence 0 000123456788999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CCCcccccccCCChhhhccceeEEEecCCChHHHHHHHHhhc----------------chhHHHHHHHHHHhhcC-Ccch
Q psy17703 467 NTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL----------------DITVLRDYIAYAQEHLS-PTLS 529 (720)
Q Consensus 467 ~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i----------------~~~~l~~~i~~ar~~~~-p~ls 529 (720)
.|+++|++||++.+.+.++.+.+.+..+..+. ....++++|..++.... ..++
T Consensus 182 ----------~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is 251 (633)
T TIGR02442 182 ----------DLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRIS 251 (633)
T ss_pred ----------CCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCC
Confidence 38999999999999998876554433333321 12256688888887543 3679
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703 530 EEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLH 591 (720)
Q Consensus 530 ~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~ 591 (720)
+++.+.+.+.+..++.. +.|....++|+|+|+|.|++++.|+.+|+.+|+.+.
T Consensus 252 ~~~~~~l~~~~~~~~i~---------s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lv 304 (633)
T TIGR02442 252 DSLIRFISELCIEFGVD---------GHRADIVMARAARALAALDGRRRVTAEDVREAAELV 304 (633)
T ss_pred HHHHHHHHHHHHHhCCC---------CccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 99999999998877532 249999999999999999999999999999999874
No 26
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.89 E-value=9.1e-22 Score=211.20 Aligned_cols=227 Identities=23% Similarity=0.271 Sum_probs=174.9
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCc------cccC-----------C---c---c--------ccccccceeecC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ------YTSG-----------K---G---S--------SAVGLTAYITKD 392 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~------~~~g-----------~---~---s--------s~~glta~~~~~ 392 (720)
+.-|+||.|+||+|||++++.++++.|... +.+. . . . ....+..+...+
T Consensus 24 ~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d 103 (337)
T TIGR02030 24 KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATED 103 (337)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCCCCCCCccc
Confidence 456899999999999999999999886421 1000 0 0 0 001111111111
Q ss_pred -----------ccccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccC
Q psy17703 393 -----------PETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP 461 (720)
Q Consensus 393 -----------~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp 461 (720)
-.+|.+.+++|.+..|++|++|+||++.+++..|..|+++|+++.+++.+.|....+++++.++|++||
T Consensus 104 ~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np 183 (337)
T TIGR02030 104 RVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNP 183 (337)
T ss_pred ceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEecccc
Confidence 125778899999999999999999999999999999999999998888899999999999999999999
Q ss_pred CCCCCCCCcccccccCCChhhhccceeEEEecCCCh-HHHHHHHHhhc---------------chhHHHHHHHHHHhhcC
Q psy17703 462 CDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQS-EQFDARLARHL---------------DITVLRDYIAYAQEHLS 525 (720)
Q Consensus 462 ~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~-~~~d~~la~~i---------------~~~~l~~~i~~ar~~~~ 525 (720)
..+. |+++|++||.+.+.+.++.+ ++..+.+.... ....+.+.|..+++.+.
T Consensus 184 ~eg~------------l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~ 251 (337)
T TIGR02030 184 EEGE------------LRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLP 251 (337)
T ss_pred ccCC------------CCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhc
Confidence 8543 99999999999999998876 33333343321 11244677788887654
Q ss_pred C-cchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703 526 P-TLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLH 591 (720)
Q Consensus 526 p-~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~ 591 (720)
. .+++++.+++.+....+|.. ++|....++|.|+|+|.+++|+.|+++|+..|..+.
T Consensus 252 ~V~v~d~~~~~i~~l~~~~~~~---------s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~v 309 (337)
T TIGR02030 252 QVTIPYDVLVKVAELCAELDVD---------GLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLA 309 (337)
T ss_pred cCcCCHHHHHHHHHHHHHHCCC---------CCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3 57889999999888776632 459999999999999999999999999999998864
No 27
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.88 E-value=3.2e-23 Score=204.82 Aligned_cols=153 Identities=24% Similarity=0.313 Sum_probs=85.5
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccce------eecCc--------------cccceeeecc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAY------ITKDP--------------ETRQMVLQTG 403 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~------~~~~~--------------~~~~~~~~~G 403 (720)
|..|+||+||||||||++++.+..++|........+.+.....+. ..... ..+....+||
T Consensus 21 G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PG 100 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPG 100 (206)
T ss_dssp CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcC
Confidence 778999999999999999999999999875544333222221111 11110 0123467899
Q ss_pred eeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcc----------cc
Q psy17703 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKT----------II 473 (720)
Q Consensus 404 ~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~----------~~ 473 (720)
.+.+||+||+|+||+..+++...++|++.||++.+++.++|...++|++|.+|||+||++|+|..... ..
T Consensus 101 eislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~ 180 (206)
T PF01078_consen 101 EISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRR 180 (206)
T ss_dssp CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S----------------------
T ss_pred HHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEecccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999765321 12
Q ss_pred cccCCChhhhccceeEEEecCCC
Q psy17703 474 DNIRLPHTLLSRFDLIFLLLDPQ 496 (720)
Q Consensus 474 ~~~~l~~aLlsRFdli~~l~d~~ 496 (720)
+.-+++.+|++|||+.+.+....
T Consensus 181 Y~~rlsgpllDRiDi~v~~~~~~ 203 (206)
T PF01078_consen 181 YQSRLSGPLLDRIDIHVEVPRVS 203 (206)
T ss_dssp -----------------------
T ss_pred ccccccccccccccccccccccc
Confidence 33489999999999988887554
No 28
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.88 E-value=2.7e-21 Score=207.36 Aligned_cols=225 Identities=21% Similarity=0.236 Sum_probs=172.2
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCC-----------------c--------------cccccccceeecCc-
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGK-----------------G--------------SSAVGLTAYITKDP- 393 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~-----------------~--------------ss~~glta~~~~~~- 393 (720)
-++||.|++|||||++++.+++++|+.....+. + ...+.+..+...+.
T Consensus 39 ~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l 118 (350)
T CHL00081 39 GGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRV 118 (350)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhc
Confidence 379999999999999999999988753211110 0 00000001111111
Q ss_pred ----------cccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCC
Q psy17703 394 ----------ETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463 (720)
Q Consensus 394 ----------~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~ 463 (720)
..+.+.+++|.+..|++|++|+||++.+++..|..|+++|+++.+++.+.|....+++++.++|++||..
T Consensus 119 ~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~e 198 (350)
T CHL00081 119 CGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEE 198 (350)
T ss_pred cCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCccc
Confidence 1244667899999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCcccccccCCChhhhccceeEEEecCCCh-HHHHHHHHhhcc-----h----------hHHHHHHHHHHhhcCC-
Q psy17703 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQS-EQFDARLARHLD-----I----------TVLRDYIAYAQEHLSP- 526 (720)
Q Consensus 464 g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~-~~~d~~la~~i~-----~----------~~l~~~i~~ar~~~~p- 526 (720)
+. |+++|++||.+.+.+.++.+ +...+.+.+... . .....-|..|++.+..
T Consensus 199 g~------------l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V 266 (350)
T CHL00081 199 GE------------LRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKV 266 (350)
T ss_pred CC------------CCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCC
Confidence 43 89999999999999998876 333334433211 1 1235667777776543
Q ss_pred cchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703 527 TLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLH 591 (720)
Q Consensus 527 ~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~ 591 (720)
.++++..+++.+.....|.. ++|....++|.|+|+|.+++|+.|+++|+..+..+.
T Consensus 267 ~v~~~~~~yi~~l~~~~~~~---------s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~v 322 (350)
T CHL00081 267 EIDYDLRVKISQICSELDVD---------GLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLC 322 (350)
T ss_pred ccCHHHHHHHHHHHHHHCCC---------CChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 57888888888887777652 469999999999999999999999999999998864
No 29
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.85 E-value=3.6e-20 Score=197.83 Aligned_cols=225 Identities=27% Similarity=0.321 Sum_probs=169.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcc-------------------------------ccccccceeecCc-
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGS-------------------------------SAVGLTAYITKDP- 393 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~s-------------------------------s~~glta~~~~~~- 393 (720)
-.+|+.|+.|||||+++|+++.++|......|-.. -.+++....+.|.
T Consensus 39 ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrv 118 (423)
T COG1239 39 GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRL 118 (423)
T ss_pred ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhh
Confidence 47999999999999999999999987543322200 1122222222221
Q ss_pred ----------cccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCC
Q psy17703 394 ----------ETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463 (720)
Q Consensus 394 ----------~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~ 463 (720)
..+...++||.|..||+||+++||++.+++..+++|+.+++++...+.+.|+..++|++|.+||||||..
T Consensus 119 vGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEe 198 (423)
T COG1239 119 VGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEE 198 (423)
T ss_pred ccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccc
Confidence 1244678899999999999999999999999999999999998778888999999999999999999997
Q ss_pred CCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHHHhhc----------------chhHHHHHHHHHHhhcCC-
Q psy17703 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL----------------DITVLRDYIAYAQEHLSP- 526 (720)
Q Consensus 464 g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i----------------~~~~l~~~i~~ar~~~~p- 526 (720)
|. |.++|++||.+.+.+..+.+.+....+.+.. ....||..+..|++-+..
T Consensus 199 Ge------------LrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V 266 (423)
T COG1239 199 GE------------LRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEV 266 (423)
T ss_pred cc------------cchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 65 8999999999999998877665444433321 234455566666654433
Q ss_pred cchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703 527 TLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLH 591 (720)
Q Consensus 527 ~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~ 591 (720)
.+++++...+.+...++--.+ -|.-..+.|.++|+|.+.++.+|+.+|+++|..|.
T Consensus 267 ~l~~~~~~~ia~~~~~~~v~g---------~radi~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~ 322 (423)
T COG1239 267 ELDDDAETKIAELCARLAVDG---------HRADIVVVRAAKALAALRGRTEVEEEDIREAAELA 322 (423)
T ss_pred cCcHHHHHHHHHHHHHhccCC---------CchhhHHHHHHHHHHHhcCceeeehhhHHHHHhhh
Confidence 456666666655444332222 27778899999999999999999999999998874
No 30
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.83 E-value=1.2e-19 Score=207.37 Aligned_cols=218 Identities=21% Similarity=0.231 Sum_probs=167.7
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCC--ccccCCcccccccccee--ecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRS--QYTSGKGSSAVGLTAYI--TKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~--~~~~g~~ss~~glta~~--~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
-|||.|++|||||++++.++.++|.. ...-..+.+...+.++. ...-..|...++||.+.+||+||+|+||++.++
T Consensus 27 Gv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~ 106 (584)
T PRK13406 27 GVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERLE 106 (584)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccCC
Confidence 69999999999999999999999852 22222333333333321 011123455689999999999999999999999
Q ss_pred hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHH
Q psy17703 423 DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDA 502 (720)
Q Consensus 423 ~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~ 502 (720)
+..+++|+++||++.++|.+.|...++|++|.+||+.|+.. +...||++|+|||++.+.+.++...+...
T Consensus 107 ~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~----------~~~~L~~~lLDRf~l~v~v~~~~~~~~~~ 176 (584)
T PRK13406 107 PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAE----------EDERAPAALADRLAFHLDLDGLALRDARE 176 (584)
T ss_pred HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChh----------cccCCCHHhHhheEEEEEcCCCChHHhcc
Confidence 99999999999999999999999999999999999977652 11369999999999999999887654321
Q ss_pred HHHhhcchhHHHHHHHHHHhhc-CCcchHHHHHHHHHHHHHhhhcCCCCCCccc-CHHHHHHHHHHHHHHHHHcCCCCCC
Q psy17703 503 RLARHLDITVLRDYIAYAQEHL-SPTLSEEASQRLIQTYVDMRKLGAGRGRISA-YPRQLESLIRLSEAHAKMRYSETVE 580 (720)
Q Consensus 503 ~la~~i~~~~l~~~i~~ar~~~-~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~-t~R~le~lirla~A~A~l~~~~~V~ 580 (720)
.......|..||+.+ .-.++++..+.+.+.+..+ .+ ++|....++|+|+|+|.+++++.|+
T Consensus 177 -------~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~----------gv~S~Ra~i~llraARa~AaL~Gr~~V~ 239 (584)
T PRK13406 177 -------IPIDADDIAAARARLPAVGPPPEAIAALCAAAAAL----------GIASLRAPLLALRAARAAAALAGRTAVE 239 (584)
T ss_pred -------cCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh----------CCCCcCHHHHHHHHHHHHHHHcCCCCCC
Confidence 112233555666543 3356777777666554432 22 5699999999999999999999999
Q ss_pred HHhHHHHHHHH
Q psy17703 581 VQDVDEAWRLH 591 (720)
Q Consensus 581 ~~Dv~~Ai~l~ 591 (720)
.+|+.+|..+.
T Consensus 240 ~~dv~~Aa~lv 250 (584)
T PRK13406 240 EEDLALAARLV 250 (584)
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 31
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.79 E-value=4.8e-18 Score=187.12 Aligned_cols=229 Identities=16% Similarity=0.131 Sum_probs=153.6
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCc---cccCCcccccccccee-ecC-cccccee-eecceeeecCCceeeccc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ---YTSGKGSSAVGLTAYI-TKD-PETRQMV-LQTGALVLADSGVCCIDE 417 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~---~~~g~~ss~~glta~~-~~~-~~~~~~~-~~~G~l~lad~gI~~IDE 417 (720)
.+-||||.||||||||+++++++..+.+.- +....-++...+.+.. ... ...+.+. ..+|.+..++ ++|+||
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDE 115 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDE 115 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeecc
Confidence 578999999999999999999999775421 1111101111222211 111 1134442 5567665554 999999
Q ss_pred cccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCCh
Q psy17703 418 FDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQS 497 (720)
Q Consensus 418 idkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~ 497 (720)
|+++++..|++|+++|+++.+++ .|....+|.++.++|+ ||.+. .-.+.+++++||-+.+.+.++.+
T Consensus 116 I~rasp~~QsaLLeam~Er~~t~--g~~~~~lp~rfiv~AT-N~LPE----------~g~~leAL~DRFliri~vp~l~~ 182 (498)
T PRK13531 116 IWKAGPAILNTLLTAINERRFRN--GAHEEKIPMRLLVTAS-NELPE----------ADSSLEALYDRMLIRLWLDKVQD 182 (498)
T ss_pred cccCCHHHHHHHHHHHHhCeEec--CCeEEeCCCcEEEEEC-CCCcc----------cCCchHHhHhhEEEEEECCCCCc
Confidence 99999999999999999999987 7888999999888887 86542 11355799999977788877764
Q ss_pred H-HHHHHHHhhc-------------chhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHH
Q psy17703 498 E-QFDARLARHL-------------DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESL 563 (720)
Q Consensus 498 ~-~~d~~la~~i-------------~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~l 563 (720)
+ +..+.+..+. +.+.+...-..++ .-.++++..+.+.+....+|... ....+|||.+.++
T Consensus 183 ~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~---~V~v~d~v~eyI~~L~~~lr~~r---~~~~~SpR~~~~l 256 (498)
T PRK13531 183 KANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIG---KITLPDHVFELIFQLRQQLDALP---NAPYVSDRRWKKA 256 (498)
T ss_pred hHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhc---ceeCCHHHHHHHHHHHHHHhcCC---CCCCcCcHHHHHH
Confidence 3 3344554321 2222322222221 23566777666665544444321 2234899999999
Q ss_pred HHHHHHHHHHcCCCCCCHHhHHHHHHHHHH
Q psy17703 564 IRLSEAHAKMRYSETVEVQDVDEAWRLHRE 593 (720)
Q Consensus 564 irla~A~A~l~~~~~V~~~Dv~~Ai~l~~~ 593 (720)
+++++|.|.+++|+.|+++|+..|...++.
T Consensus 257 ~~~akA~A~l~GR~~V~p~Dv~ll~~vL~H 286 (498)
T PRK13531 257 IRLLQASAFFSGRDAIAPIDLILLKDCLWH 286 (498)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHhHHHhcc
Confidence 999999999999999999999965554433
No 32
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.76 E-value=2.7e-17 Score=178.12 Aligned_cols=235 Identities=21% Similarity=0.267 Sum_probs=168.9
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCc----cc-cCCccccccccceeecCccccceeeecceeeecCCceeecccc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ----YT-SGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEF 418 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~----~~-~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEi 418 (720)
.+-|+||.|+||||||+|++.+++.+.... ++ ....+...|...........+.+.+.+|.+..+.++++++|||
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEI 121 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEI 121 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecc
Confidence 467999999999999999999999885321 12 1223333444333222111566788889888877789999999
Q ss_pred ccCChHHHHHHHHHHHhceEeeeccCeE-EeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCCh
Q psy17703 419 DKMSDTTRSILHEVMEQQTLSIAKAGII-CQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQS 497 (720)
Q Consensus 419 dkm~~~~~~~L~e~mE~~~vsi~k~g~~-~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~ 497 (720)
++.+++.+++|+++|+++.+++ .+.. ..++..+.++||+||.+.. ....||+++++||.+.+.+.+|..
T Consensus 122 nra~p~~q~aLl~~l~e~~vtv--~~~~~~~~~~~f~viaT~Np~e~~--------g~~~l~eA~ldRf~~~~~v~yp~~ 191 (329)
T COG0714 122 NRAPPEVQNALLEALEERQVTV--PGLTTIRLPPPFIVIATQNPGEYE--------GTYPLPEALLDRFLLRIYVDYPDS 191 (329)
T ss_pred ccCCHHHHHHHHHHHhCcEEEE--CCcCCcCCCCCCEEEEccCccccC--------CCcCCCHHHHhhEEEEEecCCCCc
Confidence 9999999999999999999999 5555 8889999999999986533 223699999999988888888855
Q ss_pred HHHHHHHHhhcc-------hhHHHHHHHHH-----Hhhc-CCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHH
Q psy17703 498 EQFDARLARHLD-------ITVLRDYIAYA-----QEHL-SPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLI 564 (720)
Q Consensus 498 ~~~d~~la~~i~-------~~~l~~~i~~a-----r~~~-~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~li 564 (720)
++....+..+.. ....+..+... ...+ ...+++++.+.+.......|.... -...+++|....++
T Consensus 192 ~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~s~r~~~~~~ 269 (329)
T COG0714 192 EEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVSDEVIDYIVTLVAALREAPD--VALGASPRASLALL 269 (329)
T ss_pred hHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHhhhccCCchHHHHHHHHHHHHhhccccc--hhccCCchhHHHHH
Confidence 554444444332 11222222111 1112 456677777777766666655322 23456789999999
Q ss_pred HHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703 565 RLSEAHAKMRYSETVEVQDVDEAWRL 590 (720)
Q Consensus 565 rla~A~A~l~~~~~V~~~Dv~~Ai~l 590 (720)
..+++.|.+.++..+..+|+......
T Consensus 270 ~~~~~~a~~~~~~~~~~~dv~~~~~~ 295 (329)
T COG0714 270 AALRALALLDGRDAVIPDDVKALAEP 295 (329)
T ss_pred HHHHhhhhhcCccccCHHHHHHHhhh
Confidence 99999999999999999999887553
No 33
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.76 E-value=1.9e-18 Score=157.38 Aligned_cols=125 Identities=27% Similarity=0.406 Sum_probs=84.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCc----cc-cCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQ----YT-SGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~----~~-~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
||||+|.||+|||++++++++.+.... ++ .-..++..|. .+-+...+.+.+.+|.+. .+|+++||+++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~---~v~~~~~~~f~~~~GPif---~~ill~DEiNra 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGF---PVYDQETGEFEFRPGPIF---TNILLADEINRA 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEE---EEEETTTTEEEEEE-TT----SSEEEEETGGGS
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceee---eeeccCCCeeEeecChhh---hceeeecccccC
Confidence 899999999999999999999875432 22 1223333333 333444577888888877 579999999999
Q ss_pred ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703 422 SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD 487 (720)
Q Consensus 422 ~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd 487 (720)
++..|++|+++|+++.|++ .|..+.+|..+.|+||.||.+.. ..+.||.++++||-
T Consensus 75 ppktQsAlLeam~Er~Vt~--~g~~~~lp~pf~ViATqNp~e~~--------Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 75 PPKTQSALLEAMEERQVTI--DGQTYPLPDPFFVIATQNPVEQE--------GTYPLPEAQLDRFM 130 (131)
T ss_dssp -HHHHHHHHHHHHHSEEEE--TTEEEE--SS-EEEEEE-TT--S--------------HHHHTTSS
T ss_pred CHHHHHHHHHHHHcCeEEe--CCEEEECCCcEEEEEecCccccC--------ceecCCHHHhcccc
Confidence 9999999999999999999 99999999999999999997532 34579999999995
No 34
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.73 E-value=1.9e-16 Score=167.61 Aligned_cols=211 Identities=16% Similarity=0.180 Sum_probs=141.3
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccC----CccccccccceeecCccccceeeecceeeec--CCceeeccc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSG----KGSSAVGLTAYITKDPETRQMVLQTGALVLA--DSGVCCIDE 417 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g----~~ss~~glta~~~~~~~~~~~~~~~G~l~la--d~gI~~IDE 417 (720)
+-||||.|+||||||++++.+++.+....+ ..+ ......|......++. .....++.|.+..| +++++++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g-~~~~~f~~GpL~~A~~~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDG-KQITEFRDGILPWALQHNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCC-cceeEEecCcchhHHhCCeEEEech
Confidence 458999999999999999999998754332 111 1222333333322222 12245577877654 577899999
Q ss_pred cccCChHHHHHHHHHHH-hceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCC
Q psy17703 418 FDKMSDTTRSILHEVME-QQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQ 496 (720)
Q Consensus 418 idkm~~~~~~~L~e~mE-~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~ 496 (720)
+|.++++.+.+|+.++| ++.+++...+....-+..|.++||+||.+.+ +..--......+|.++++||-+++.+.+++
T Consensus 143 in~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~G-d~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~ 221 (327)
T TIGR01650 143 YDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLG-DTTGLYHGTQQINQAQMDRWSIVTTLNYLE 221 (327)
T ss_pred hhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcC-CCCcceeeeecCCHHHHhheeeEeeCCCCC
Confidence 99999999999999999 5688886666555556689999999998733 111112345579999999998777888887
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcC-CCCCCcccCHHHHHHHHHHHHHH
Q psy17703 497 SEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLG-AGRGRISAYPRQLESLIRLSEAH 570 (720)
Q Consensus 497 ~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~-~~~~~~~~t~R~le~lirla~A~ 570 (720)
.+.+.+.+.... . .......++..+.+++.....|... ...-...+|||.+.+|.+++...
T Consensus 222 ~e~E~~Il~~~~------------~-~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~~~f 283 (327)
T TIGR01650 222 HDNEAAIVLAKA------------K-GFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENAEIF 283 (327)
T ss_pred HHHHHHHHHhhc------------c-CCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHHHhh
Confidence 766554444211 0 0111123556677777666677632 12335678999999999887643
No 35
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.70 E-value=5e-16 Score=179.59 Aligned_cols=175 Identities=20% Similarity=0.267 Sum_probs=135.4
Q ss_pred eecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccC-----e---EEeecCceEEEecccCCCCCCCCCcc
Q psy17703 400 LQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAG-----I---ICQLNARTSILAAANPCDSQWNTSKT 471 (720)
Q Consensus 400 ~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g-----~---~~~l~a~~~iiaaaNp~~g~~~~~~~ 471 (720)
.++|.+..|++|++||||++.|++..|..|+++|+++++.+.... . ....|.++.+|+++||..
T Consensus 208 i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~-------- 279 (608)
T TIGR00764 208 VEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD-------- 279 (608)
T ss_pred CCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH--------
Confidence 479999999999999999999999999999999999998884421 1 234678999999999752
Q ss_pred cccccCCChhhhccce---eEEEecC--CChHHHHHHHHhhcchhHHHHHHHH-HHhh-cCCcchHHHHHHHHHHHHHhh
Q psy17703 472 IIDNIRLPHTLLSRFD---LIFLLLD--PQSEQFDARLARHLDITVLRDYIAY-AQEH-LSPTLSEEASQRLIQTYVDMR 544 (720)
Q Consensus 472 ~~~~~~l~~aLlsRFd---li~~l~d--~~~~~~d~~la~~i~~~~l~~~i~~-ar~~-~~p~ls~ea~~~l~~~y~~lr 544 (720)
...++++|++||+ +.+.+.+ +.+.+....+++ |+.. ++++ ..|.+++++.+.+.++|..+
T Consensus 280 ---l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~---------~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~- 346 (608)
T TIGR00764 280 ---LEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQ---------FVAQEVKKDGRIPHFTRDAVEEIVREAQRR- 346 (608)
T ss_pred ---HhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHH---------HHHHHHHHhCCCCcCCHHHHHHHHHHHHHH-
Confidence 1258899999999 6666553 334443333332 3322 3333 46789999999999987654
Q ss_pred hcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHHHH
Q psy17703 545 KLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQ 597 (720)
Q Consensus 545 ~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l~~ 597 (720)
...++.++.+.|++..++|.|.+.|+.+++..|+.+|+.+|++..+....+
T Consensus 347 --ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~~~~~ 397 (608)
T TIGR00764 347 --AGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKTLEKQ 397 (608)
T ss_pred --HhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHHHHHH
Confidence 334556888899999999999999999999999999999999876655443
No 36
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.69 E-value=4.3e-16 Score=163.18 Aligned_cols=212 Identities=18% Similarity=0.228 Sum_probs=140.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCc----ccccccccee-------------ecCccccceeeeccee
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKG----SSAVGLTAYI-------------TKDPETRQMVLQTGAL 405 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~----ss~~glta~~-------------~~~~~~~~~~~~~G~l 405 (720)
.+.|+||.||||||||++++++++.+..... ..+.. +...|..... .+..........+|.+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 4679999999999999999999986643322 22221 1111110000 0000011122346666
Q ss_pred ee--cCCceeeccccccCChHHHHHHHHHHHhceEeeecc---CeEEeecCceEEEecccCCCCCCCCCcccccccCCCh
Q psy17703 406 VL--ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKA---GIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPH 480 (720)
Q Consensus 406 ~l--ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~---g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~ 480 (720)
.. ..+++++|||+++++++.++.|+++||++.+++... +.....+.+|.+|+|+||.... ....+++
T Consensus 100 ~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~--------g~~~l~~ 171 (262)
T TIGR02640 100 TLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYA--------GVHETQD 171 (262)
T ss_pred HHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccc--------ceecccH
Confidence 64 478899999999999999999999999999888532 2345577899999999986422 1124689
Q ss_pred hhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHH
Q psy17703 481 TLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQL 560 (720)
Q Consensus 481 aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~l 560 (720)
+|++|| ..+.+..|+.++..+.+..+ ..+.++..+.+++.+.++|..+. ....++|++
T Consensus 172 aL~~R~-~~i~i~~P~~~~e~~Il~~~------------------~~~~~~~~~~iv~~~~~~R~~~~---~~~~~~r~~ 229 (262)
T TIGR02640 172 ALLDRL-ITIFMDYPDIDTETAILRAK------------------TDVAEDSAATIVRLVREFRASGD---EITSGLRAS 229 (262)
T ss_pred HHHhhc-EEEECCCCCHHHHHHHHHHh------------------hCCCHHHHHHHHHHHHHHHhhCC---ccCCcHHHH
Confidence 999999 45666666544443333321 13577888899999999994222 234457877
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHhHHHHH
Q psy17703 561 ESLIRLSEAHAKMRYSETVEVQDVDEAW 588 (720)
Q Consensus 561 e~lirla~A~A~l~~~~~V~~~Dv~~Ai 588 (720)
..|.|.+++ +.++..++++|+....
T Consensus 230 i~~~~~~~~---~~~~~~~~~~~~~~~~ 254 (262)
T TIGR02640 230 LMIAEVATQ---QDIPVDVDDEDFVDLC 254 (262)
T ss_pred HHHHHHHHH---cCCCCCCCcHHHHHHH
Confidence 666665555 4678999999998764
No 37
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.66 E-value=8.6e-15 Score=148.40 Aligned_cols=192 Identities=24% Similarity=0.323 Sum_probs=143.0
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCc-cccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHH
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQ-YTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTT 425 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~-~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~ 425 (720)
|+||+||||+|||+||..+|+.+.-.. .++|.--.-.|..++... .+..+.|+|||||+++++..
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt--------------~Le~~DVLFIDEIHrl~~~v 119 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILT--------------NLEEGDVLFIDEIHRLSPAV 119 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHh--------------cCCcCCeEEEehhhhcChhH
Confidence 999999999999999999999875332 233322211111111111 13457899999999999999
Q ss_pred HHHHHHHHHhceEeee--c--cCeEEeec-CceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHH
Q psy17703 426 RSILHEVMEQQTLSIA--K--AGIICQLN-ARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQF 500 (720)
Q Consensus 426 ~~~L~e~mE~~~vsi~--k--~g~~~~l~-a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~ 500 (720)
-+.|+.+||+..+.|- + +.....++ ..|++|+|+...+ .|+.||.+||-++..+.....++.
T Consensus 120 EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G-------------~lt~PLrdRFGi~~rlefY~~~eL 186 (332)
T COG2255 120 EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAG-------------MLTNPLRDRFGIIQRLEFYTVEEL 186 (332)
T ss_pred HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccc-------------cccchhHHhcCCeeeeecCCHHHH
Confidence 9999999999887653 2 22334444 4699999998655 589999999999999988777766
Q ss_pred HHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCC
Q psy17703 501 DARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVE 580 (720)
Q Consensus 501 d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~ 580 (720)
.+.+.+ ....+.-.+++++...|... . ..|||-...|+|--+..|..++...++
T Consensus 187 ~~Iv~r-------------~a~~l~i~i~~~~a~eIA~r-----S--------RGTPRIAnRLLrRVRDfa~V~~~~~I~ 240 (332)
T COG2255 187 EEIVKR-------------SAKILGIEIDEEAALEIARR-----S--------RGTPRIANRLLRRVRDFAQVKGDGDID 240 (332)
T ss_pred HHHHHH-------------HHHHhCCCCChHHHHHHHHh-----c--------cCCcHHHHHHHHHHHHHHHHhcCCccc
Confidence 555442 33446778899998888632 1 357899999999999999999999999
Q ss_pred HHhHHHHHHHH
Q psy17703 581 VQDVDEAWRLH 591 (720)
Q Consensus 581 ~~Dv~~Ai~l~ 591 (720)
.+-+.+|+..+
T Consensus 241 ~~ia~~aL~~L 251 (332)
T COG2255 241 RDIADKALKML 251 (332)
T ss_pred HHHHHHHHHHh
Confidence 98888887654
No 38
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.66 E-value=3.1e-16 Score=156.21 Aligned_cols=172 Identities=22% Similarity=0.308 Sum_probs=107.8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT 424 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~ 424 (720)
-|+||+||||+|||+||+.+|+.+..... ++|......+..+.... .+..+.|+|||||+++++.
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~--------------~l~~~~ILFIDEIHRlnk~ 116 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILT--------------NLKEGDILFIDEIHRLNKA 116 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHH--------------T--TT-EEEECTCCC--HH
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHH--------------hcCCCcEEEEechhhccHH
Confidence 39999999999999999999998865432 22211111111111100 1235679999999999999
Q ss_pred HHHHHHHHHHhceEeee-ccC---eEEeec-CceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHH
Q psy17703 425 TRSILHEVMEQQTLSIA-KAG---IICQLN-ARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQ 499 (720)
Q Consensus 425 ~~~~L~e~mE~~~vsi~-k~g---~~~~l~-a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~ 499 (720)
.|+.|+.+||++.+.+- .+| ...+++ .+|++|+|++..+ .|++||.+||-+++.+.....++
T Consensus 117 ~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g-------------~ls~pLrdRFgi~~~l~~Y~~~e 183 (233)
T PF05496_consen 117 QQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAG-------------LLSSPLRDRFGIVLRLEFYSEEE 183 (233)
T ss_dssp HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGC-------------CTSHCCCTTSSEEEE----THHH
T ss_pred HHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecccc-------------ccchhHHhhcceecchhcCCHHH
Confidence 99999999999998642 333 234444 5799999998654 59999999999988888777665
Q ss_pred HHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703 500 FDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH 570 (720)
Q Consensus 500 ~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~ 570 (720)
....+. .......-.+++++...|... -..|||-...|+|-.+..
T Consensus 184 l~~Iv~-------------r~a~~l~i~i~~~~~~~Ia~r-------------srGtPRiAnrll~rvrD~ 228 (233)
T PF05496_consen 184 LAKIVK-------------RSARILNIEIDEDAAEEIARR-------------SRGTPRIANRLLRRVRDF 228 (233)
T ss_dssp HHHHHH-------------HCCHCTT-EE-HHHHHHHHHC-------------TTTSHHHHHHHHHHHCCC
T ss_pred HHHHHH-------------HHHHHhCCCcCHHHHHHHHHh-------------cCCChHHHHHHHHHHHHH
Confidence 544433 333445677888888877631 135789888888765433
No 39
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.57 E-value=5.9e-14 Score=160.68 Aligned_cols=209 Identities=18% Similarity=0.245 Sum_probs=139.8
Q ss_pred CCCCccEEEEcCCCCHHHHHHHHHHhhCCCC---------ccc--cCCc--ccccccccee---ecCc---------ccc
Q psy17703 342 TPAEINILLCGDPGTSKSQLLSYVYDLVPRS---------QYT--SGKG--SSAVGLTAYI---TKDP---------ETR 396 (720)
Q Consensus 342 ~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~---------~~~--~g~~--ss~~glta~~---~~~~---------~~~ 396 (720)
.+...|+||+||||||||++|+++++.+.+. .+. +... .+.-++.... ..++ ..+
T Consensus 83 ~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g 162 (531)
T TIGR02902 83 GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAG 162 (531)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCC
Confidence 3456899999999999999999998753211 111 1000 0000000000 0011 112
Q ss_pred ceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccC---------------eEEeecCceEEEecccC
Q psy17703 397 QMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAG---------------IICQLNARTSILAAANP 461 (720)
Q Consensus 397 ~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g---------------~~~~l~a~~~iiaaaNp 461 (720)
....++|.+..+++|++||||++.|+++.|+.|+.+||++.+.+..+. ....+|+++.+|+|+|.
T Consensus 163 ~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~ 242 (531)
T TIGR02902 163 IPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTR 242 (531)
T ss_pred cccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecC
Confidence 233467888899999999999999999999999999999887653110 02346888999988874
Q ss_pred CCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Q psy17703 462 CDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYV 541 (720)
Q Consensus 462 ~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~ 541 (720)
... .+++++++||. .+.+.+...++.... . + .+-++....+++++.+.+..+..
T Consensus 243 ~p~------------~L~paLrsR~~-~I~f~pL~~eei~~I-l--------~----~~a~k~~i~is~~al~~I~~y~~ 296 (531)
T TIGR02902 243 NPE------------EIPPALRSRCV-EIFFRPLLDEEIKEI-A--------K----NAAEKIGINLEKHALELIVKYAS 296 (531)
T ss_pred Ccc------------cCChHHhhhhh-eeeCCCCCHHHHHHH-H--------H----HHHHHcCCCcCHHHHHHHHHhhh
Confidence 432 48999999996 445665554443222 2 1 12222456789999987765421
Q ss_pred HhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703 542 DMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL 590 (720)
Q Consensus 542 ~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l 590 (720)
+.|++..+++.|...|..+.+..|+.+|+++++..
T Consensus 297 --------------n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 297 --------------NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred --------------hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 13999999999988888888889999999999863
No 40
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=99.56 E-value=1.3e-15 Score=164.52 Aligned_cols=67 Identities=66% Similarity=1.004 Sum_probs=54.6
Q ss_pred hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCCCCC
Q psy17703 654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT 720 (720)
Q Consensus 654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~~~~ 720 (720)
.|+++.+++|+||||||++|+++++.+|||+||||+++|+|+|++++|||||+|+|||||++||||.
T Consensus 114 aGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~ 180 (331)
T PF00493_consen 114 AGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDP 180 (331)
T ss_dssp E-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-T
T ss_pred CCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcch
Confidence 7889999999999999999999999999999999999999999999999999999999999999973
No 41
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.55 E-value=2.6e-14 Score=154.83 Aligned_cols=210 Identities=20% Similarity=0.248 Sum_probs=151.1
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCcc----ccCC---ccccccccceeecCccccceeeecceeeecCCceeecc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQY----TSGK---GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCID 416 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~----~~g~---~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~ID 416 (720)
.+.+|||.|++||||..+|++|++.+||... ...- ++-.-....+..+..+||...-+.|.+.+||||.+|+|
T Consensus 245 Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLD 324 (550)
T COG3604 245 SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLD 324 (550)
T ss_pred CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeecCCCeEech
Confidence 6899999999999999999999999988522 1110 01000111223455677888889999999999999999
Q ss_pred ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCC
Q psy17703 417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQ 496 (720)
Q Consensus 417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~ 496 (720)
||..|+.+.|..|+.++.++.+. +.|...+++.++.||||+|..- +..+.+-++...|+.|.. +|.+.-||
T Consensus 325 EIGelPL~lQaKLLRvLQegEie--RvG~~r~ikVDVRiIAATNRDL------~~~V~~G~FRaDLYyRLs-V~Pl~lPP 395 (550)
T COG3604 325 EIGELPLALQAKLLRVLQEGEIE--RVGGDRTIKVDVRVIAATNRDL------EEMVRDGEFRADLYYRLS-VFPLELPP 395 (550)
T ss_pred hhccCCHHHHHHHHHHHhhccee--ecCCCceeEEEEEEEeccchhH------HHHHHcCcchhhhhhccc-ccccCCCC
Confidence 99999999999999999998865 5899999999999999999542 233444568888999998 55555444
Q ss_pred hHHHHHHHHhhcchhHHHH-HHHHHHhhc---CCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703 497 SEQFDARLARHLDITVLRD-YIAYAQEHL---SPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK 572 (720)
Q Consensus 497 ~~~~d~~la~~i~~~~l~~-~i~~ar~~~---~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~ 572 (720)
-.++.. |..+|.+ |+..++... .-.++++|.+.|.+| .||.+.|.||.+++-|--.|
T Consensus 396 LRER~~------DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y------------~wPGNVRELen~veRavlla- 456 (550)
T COG3604 396 LRERPE------DIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSY------------EWPGNVRELENVVERAVLLA- 456 (550)
T ss_pred cccCCc------cHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcC------------CCCCcHHHHHHHHHHHHHHh-
Confidence 333221 2233333 334444332 336899999888755 47889999999998776665
Q ss_pred HcCCCCCCHHhH
Q psy17703 573 MRYSETVEVQDV 584 (720)
Q Consensus 573 l~~~~~V~~~Dv 584 (720)
...++.+|+
T Consensus 457 ---~~~~~~~d~ 465 (550)
T COG3604 457 ---GRLTRRGDL 465 (550)
T ss_pred ---cccCCCcce
Confidence 234555665
No 42
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.54 E-value=1.2e-14 Score=137.32 Aligned_cols=129 Identities=25% Similarity=0.390 Sum_probs=88.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccC-CccccccccceeecCccccceeeecceeeec--CCceeeccccccCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQY-TSG-KGSSAVGLTAYITKDPETRQMVLQTGALVLA--DSGVCCIDEFDKMS 422 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g-~~ss~~glta~~~~~~~~~~~~~~~G~l~la--d~gI~~IDEidkm~ 422 (720)
||||+||||+|||++++++++.+....+ ..+ ..++...+...+... .+.....+|.++.+ ++++++|||+++++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCcccCC
Confidence 7999999999999999999998854432 122 223333333333222 34455566776644 68899999999999
Q ss_pred hHHHHHHHHHHHhceEeeeccCeEEeecC------ceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703 423 DTTRSILHEVMEQQTLSIAKAGIICQLNA------RTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF 486 (720)
Q Consensus 423 ~~~~~~L~e~mE~~~vsi~k~g~~~~l~a------~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF 486 (720)
++.+..|+.+++++.+.+...+.....+. .+.+|||+||.. . ....++++|+|||
T Consensus 79 ~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~--------~~~~l~~al~~Rf 139 (139)
T PF07728_consen 79 PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-K--------GRKELSPALLDRF 139 (139)
T ss_dssp HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST-----------TTTTCHHHHTT-
T ss_pred HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-C--------CcCcCCHHHHhhC
Confidence 99999999999999988766665555544 499999999887 1 1226999999998
No 43
>PHA02244 ATPase-like protein
Probab=99.53 E-value=1e-13 Score=148.28 Aligned_cols=143 Identities=15% Similarity=0.225 Sum_probs=101.1
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceee--ecCCceeeccccccC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALV--LADSGVCCIDEFDKM 421 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~--lad~gI~~IDEidkm 421 (720)
.+.||||+||||||||+++++++..+....+..........+.+.. . ..+. .+.|.+. ...+|+|+|||++.+
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i-~--~~g~--~~dgpLl~A~~~GgvLiLDEId~a 192 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFI-D--ANGK--FHETPFYEAFKKGGLFFIDEIDAS 192 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccc-c--cccc--ccchHHHHHhhcCCEEEEeCcCcC
Confidence 5789999999999999999999998754433221111111111111 0 1122 2334332 357899999999999
Q ss_pred ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCC
Q psy17703 422 SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQ 496 (720)
Q Consensus 422 ~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~ 496 (720)
+++.+..|+.+++++.+.+ .|.....+.+|++|||+||...+|+.. +.....|++++++||- .+.+.+|.
T Consensus 193 ~p~vq~~L~~lLd~r~l~l--~g~~i~~h~~FRlIATsN~~~~G~~~~--y~G~k~L~~AllDRFv-~I~~dyp~ 262 (383)
T PHA02244 193 IPEALIIINSAIANKFFDF--ADERVTAHEDFRVISAGNTLGKGADHI--YVARNKIDGATLDRFA-PIEFDYDE 262 (383)
T ss_pred CHHHHHHHHHHhccCeEEe--cCcEEecCCCEEEEEeeCCCccCcccc--cCCCcccCHHHHhhcE-EeeCCCCc
Confidence 9999999999999887665 566777788999999999988777542 1234479999999995 67777765
No 44
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.52 E-value=6.4e-14 Score=153.91 Aligned_cols=210 Identities=21% Similarity=0.288 Sum_probs=142.4
Q ss_pred CCCccEEEEcCCCCHHHHHHHHHHhhCCCCcc--c---c------CCccccccccceeecCccccceee-ecceeeecCC
Q psy17703 343 PAEINILLCGDPGTSKSQLLSYVYDLVPRSQY--T---S------GKGSSAVGLTAYITKDPETRQMVL-QTGALVLADS 410 (720)
Q Consensus 343 pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~--~---~------g~~ss~~glta~~~~~~~~~~~~~-~~G~l~lad~ 410 (720)
+.+.+|||.|++||||..+|+++++.+||..- . + -.+|..+|.. +..+||...- ++|.+.+|++
T Consensus 266 ~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye----~GAFTGA~~~GK~GlfE~A~g 341 (560)
T COG3829 266 KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYE----KGAFTGASKGGKPGLFELANG 341 (560)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcC----CccccccccCCCCcceeeccC
Confidence 47899999999999999999999999988421 0 1 1122222322 2234444333 7899999999
Q ss_pred ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703 411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF 490 (720)
Q Consensus 411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~ 490 (720)
|.+|+|||..|+...|..|+++++++.+. +-|.....+.++.||||+|.... ...+.-.|...|..|..++=
T Consensus 342 GTLFLDEIgempl~LQaKLLRVLQEkei~--rvG~t~~~~vDVRIIAATN~nL~------~~i~~G~FReDLYYRLNV~~ 413 (560)
T COG3829 342 GTLFLDEIGEMPLPLQAKLLRVLQEKEIE--RVGGTKPIPVDVRIIAATNRNLE------KMIAEGTFREDLYYRLNVIP 413 (560)
T ss_pred CeEEehhhccCCHHHHHHHHHHHhhceEE--ecCCCCceeeEEEEEeccCcCHH------HHHhcCcchhhheeeeceee
Confidence 99999999999999999999999988865 48899999999999999996532 23344467888899998443
Q ss_pred EecCCChHHHHHHHHhhcchhHHHHHH-HH-HHhh--cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703 491 LLLDPQSEQFDARLARHLDITVLRDYI-AY-AQEH--LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL 566 (720)
Q Consensus 491 ~l~d~~~~~~d~~la~~i~~~~l~~~i-~~-ar~~--~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl 566 (720)
...+| -.++-+ |...|-.|+ .. .+.. ..+.+++++...|..| .||.+.|+|+.++.-
T Consensus 414 i~iPP-LReR~e------DI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y------------~WPGNVRELeNviER 474 (560)
T COG3829 414 ITIPP-LRERKE------DIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRY------------DWPGNVRELENVIER 474 (560)
T ss_pred ecCCC-cccCcc------hHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhC------------CCCchHHHHHHHHHH
Confidence 33232 222111 222233322 22 2221 2346899999888754 689999999999875
Q ss_pred HHHHHHHcCCCCCCHHhHH
Q psy17703 567 SEAHAKMRYSETVEVQDVD 585 (720)
Q Consensus 567 a~A~A~l~~~~~V~~~Dv~ 585 (720)
+--. +.-...|+.+|+.
T Consensus 475 ~v~~--~~~~~~I~~~~lp 491 (560)
T COG3829 475 AVNL--VESDGLIDADDLP 491 (560)
T ss_pred HHhc--cCCcceeehhhcc
Confidence 4321 2333345555554
No 45
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.50 E-value=1.4e-13 Score=151.54 Aligned_cols=211 Identities=19% Similarity=0.265 Sum_probs=148.5
Q ss_pred CCCccEEEEcCCCCHHHHHHHHHHhhCCCCc--cc---cCC------ccccccccceeecCccccceeeecceeeecCCc
Q psy17703 343 PAEINILLCGDPGTSKSQLLSYVYDLVPRSQ--YT---SGK------GSSAVGLTAYITKDPETRQMVLQTGALVLADSG 411 (720)
Q Consensus 343 pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~--~~---~g~------~ss~~glta~~~~~~~~~~~~~~~G~l~lad~g 411 (720)
+.+.+||+.|++||||-.+|+++++.++|.- |. ++- +|-.+| ..+..+||....+.|.+..|+||
T Consensus 162 ~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFG----hekGAFTGA~~~r~G~fE~A~GG 237 (464)
T COG2204 162 PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFG----HEKGAFTGAITRRIGRFEQANGG 237 (464)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhc----ccccCcCCcccccCcceeEcCCc
Confidence 4789999999999999999999999998731 11 010 111111 12333566777789999999999
Q ss_pred eeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEE
Q psy17703 412 VCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFL 491 (720)
Q Consensus 412 I~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~ 491 (720)
.+|||||..|+.+.|..|+++++++.+.- -|...+.+.++.||||+|... +....+-.|.+.|+.|+. ++.
T Consensus 238 TLfLDEI~~mpl~~Q~kLLRvLqe~~~~r--vG~~~~i~vdvRiIaaT~~dL------~~~v~~G~FReDLyyRLn-V~~ 308 (464)
T COG2204 238 TLFLDEIGEMPLELQVKLLRVLQEREFER--VGGNKPIKVDVRIIAATNRDL------EEEVAAGRFREDLYYRLN-VVP 308 (464)
T ss_pred eEEeeccccCCHHHHHHHHHHHHcCeeEe--cCCCcccceeeEEEeecCcCH------HHHHHcCCcHHHHHhhhc-cce
Confidence 99999999999999999999999998764 888999999999999999543 223344468899999998 344
Q ss_pred ecCCChHHHHHHHHhhcchhHHHHHHHHHHh---hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703 492 LLDPQSEQFDARLARHLDITVLRDYIAYAQE---HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE 568 (720)
Q Consensus 492 l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~---~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~ 568 (720)
+.-|+-.++.+-|- .+...|+..+.. .-.+.+++++.+.|..| +||.+.|+|+.+++.+-
T Consensus 309 i~iPpLRER~EDIp-----~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y------------~WPGNVREL~N~ver~~ 371 (464)
T COG2204 309 LRLPPLRERKEDIP-----LLAEHFLKRFAAELGRPPKGFSPEALAALLAY------------DWPGNVRELENVVERAV 371 (464)
T ss_pred ecCCcccccchhHH-----HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC------------CCChHHHHHHHHHHHHH
Confidence 44333333222111 122233332222 23568999999988754 68999999999988765
Q ss_pred HHHHHcCCCCCCHHhHHH
Q psy17703 569 AHAKMRYSETVEVQDVDE 586 (720)
Q Consensus 569 A~A~l~~~~~V~~~Dv~~ 586 (720)
..+ ..+.++.+|+.-
T Consensus 372 il~---~~~~i~~~~l~~ 386 (464)
T COG2204 372 ILS---EGPEIEVEDLPL 386 (464)
T ss_pred hcC---Cccccchhhccc
Confidence 543 334566666553
No 46
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.49 E-value=5.6e-13 Score=153.88 Aligned_cols=166 Identities=19% Similarity=0.262 Sum_probs=126.2
Q ss_pred eecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeecc----Ce----EEeecCceEEEecccCCCCCCCCCcc
Q psy17703 400 LQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKA----GI----ICQLNARTSILAAANPCDSQWNTSKT 471 (720)
Q Consensus 400 ~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~----g~----~~~l~a~~~iiaaaNp~~g~~~~~~~ 471 (720)
+++|.+..|++|++||||++.|++..|..|+++|+++.+.+... +. ....|.++.+|+++|+..
T Consensus 217 i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~l-------- 288 (637)
T PRK13765 217 VEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDA-------- 288 (637)
T ss_pred CCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCH--------
Confidence 38999999999999999999999999999999999999877221 00 345678999999999842
Q ss_pred cccccCCChhhhccce---eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhh-----cCCcchHHHHHHHHHHHHHh
Q psy17703 472 IIDNIRLPHTLLSRFD---LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEH-----LSPTLSEEASQRLIQTYVDM 543 (720)
Q Consensus 472 ~~~~~~l~~aLlsRFd---li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~-----~~p~ls~ea~~~l~~~y~~l 543 (720)
. ..+.++|.+||. +.+.+.+..+. +.+..++|+.+..+. -.|.++++|...++++|...
T Consensus 289 -l--~~~dpdL~~rfk~~~v~v~f~~~~~d----------~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ 355 (637)
T PRK13765 289 -L--ENMHPALRSRIKGYGYEVYMRDTMED----------TPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRR 355 (637)
T ss_pred -H--HhhhHHHHHHhccCeEEEEcccccCC----------CHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHH
Confidence 1 135789999996 45555443221 223345555544432 24689999999999998754
Q ss_pred hhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHH
Q psy17703 544 RKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 544 r~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
- ..++.++...|++..|+|.|...|+.+.++.|+.+|+.+|+.
T Consensus 356 a---g~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 356 A---GRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred h---CCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHH
Confidence 2 234456677899999999999999999999999999998875
No 47
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.44 E-value=1.9e-12 Score=140.27 Aligned_cols=191 Identities=23% Similarity=0.304 Sum_probs=128.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT 424 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~ 424 (720)
-|+||+||||||||++++++++.+..... ..+......+ ..... + -.+..++++||||++.++..
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~---------~l~~~-l----~~l~~~~vl~IDEi~~l~~~ 117 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPG---------DLAAI-L----TNLEEGDVLFIDEIHRLSPV 117 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChH---------HHHHH-H----HhcccCCEEEEecHhhcchH
Confidence 48999999999999999999997753221 1111000000 00000 0 01245789999999999998
Q ss_pred HHHHHHHHHHhceEee--eccCe----EEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChH
Q psy17703 425 TRSILHEVMEQQTLSI--AKAGI----ICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSE 498 (720)
Q Consensus 425 ~~~~L~e~mE~~~vsi--~k~g~----~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~ 498 (720)
.++.|+.+|++..+.+ .+... ...+| ++.+++|+|+.. .++++|.|||.+++.+..++.+
T Consensus 118 ~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~-~~~li~at~~~~-------------~l~~~L~sRf~~~~~l~~~~~~ 183 (328)
T PRK00080 118 VEEILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFTLIGATTRAG-------------LLTSPLRDRFGIVQRLEFYTVE 183 (328)
T ss_pred HHHHHHHHHHhcceeeeeccCccccceeecCC-CceEEeecCCcc-------------cCCHHHHHhcCeeeecCCCCHH
Confidence 8899999999876543 11111 11233 478899888654 4789999999988888887766
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCC
Q psy17703 499 QFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSET 578 (720)
Q Consensus 499 ~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~ 578 (720)
+....+.+ ........+++++.+.|.... ..+||.+..+++.....|..+....
T Consensus 184 e~~~il~~-------------~~~~~~~~~~~~~~~~ia~~~-------------~G~pR~a~~~l~~~~~~a~~~~~~~ 237 (328)
T PRK00080 184 ELEKIVKR-------------SARILGVEIDEEGALEIARRS-------------RGTPRIANRLLRRVRDFAQVKGDGV 237 (328)
T ss_pred HHHHHHHH-------------HHHHcCCCcCHHHHHHHHHHc-------------CCCchHHHHHHHHHHHHHHHcCCCC
Confidence 55433332 222246678889888887431 2346989888888888887777778
Q ss_pred CCHHhHHHHHHH
Q psy17703 579 VEVQDVDEAWRL 590 (720)
Q Consensus 579 V~~~Dv~~Ai~l 590 (720)
++.+++..++..
T Consensus 238 I~~~~v~~~l~~ 249 (328)
T PRK00080 238 ITKEIADKALDM 249 (328)
T ss_pred CCHHHHHHHHHH
Confidence 999999998753
No 48
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.44 E-value=8.8e-13 Score=142.41 Aligned_cols=200 Identities=20% Similarity=0.215 Sum_probs=132.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCC--ccc--cCCccccc---cccceeecCccccceeeecceeeecCCceeecc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRS--QYT--SGKGSSAV---GLTAYITKDPETRQMVLQTGALVLADSGVCCID 416 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~--~~~--~g~~ss~~---glta~~~~~~~~~~~~~~~G~l~lad~gI~~ID 416 (720)
.+.+|||.|+|||||+.+|++++...++. .+. .....+.. ....+..+...++.....+|.+..|++|++|||
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ld 100 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLD 100 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCCCEEEeC
Confidence 57899999999999999999999988652 111 11100000 000011111223333346788899999999999
Q ss_pred ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee-EEEecCC
Q psy17703 417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL-IFLLLDP 495 (720)
Q Consensus 417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl-i~~l~d~ 495 (720)
|++.|+.+.|..|+.+++++.+. +.|.....+.++.+|+|+|.... .....-.+.+.|+.||.. .+.+++.
T Consensus 101 ei~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~RiI~at~~~l~------~~~~~g~fr~dL~~rl~~~~i~lPpL 172 (329)
T TIGR02974 101 ELATASLLVQEKLLRVIEYGEFE--RVGGSQTLQVDVRLVCATNADLP------ALAAEGRFRADLLDRLAFDVITLPPL 172 (329)
T ss_pred ChHhCCHHHHHHHHHHHHcCcEE--ecCCCceeccceEEEEechhhHH------HHhhcCchHHHHHHHhcchhcCCCch
Confidence 99999999999999999988765 36666778889999999986531 112233577899999963 4444444
Q ss_pred ChHHHHHHHHhhcchhHHHHHHHH-HHhh-cC--CcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703 496 QSEQFDARLARHLDITVLRDYIAY-AQEH-LS--PTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH 570 (720)
Q Consensus 496 ~~~~~d~~la~~i~~~~l~~~i~~-ar~~-~~--p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~ 570 (720)
.+...| |. .+++.|+.. +++. .. +.+++++.+.|..| +||.+.|+|+.+++-+-..
T Consensus 173 ReR~eD--I~-----~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y------------~WPGNvrEL~n~i~~~~~~ 232 (329)
T TIGR02974 173 RERQED--IM-----LLAEHFAIRMARELGLPLFPGFTPQAREQLLEY------------HWPGNVRELKNVVERSVYR 232 (329)
T ss_pred hhhhhh--HH-----HHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC------------CCCchHHHHHHHHHHHHHh
Confidence 332222 11 123334432 3321 12 57999999998755 5888999999988755443
No 49
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.41 E-value=5.6e-13 Score=147.28 Aligned_cols=194 Identities=15% Similarity=0.201 Sum_probs=121.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD 423 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~ 423 (720)
..|+||+||||||||++++++++.+....+ .++...+..+..+.-........+....+.+..+.+||+||||+|+++.
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 569999999999999999999987743222 1111111111100000000000011123444567889999999999976
Q ss_pred H--------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCC---CCCCC------------------
Q psy17703 424 T--------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD---SQWNT------------------ 468 (720)
Q Consensus 424 ~--------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~---g~~~~------------------ 468 (720)
. .|.+|+++||...+.+...|....-...+.+|+|+|..+ |.|.+
T Consensus 188 ~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~ 267 (412)
T PRK05342 188 KSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGA 267 (412)
T ss_pred ccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCcc
Confidence 3 789999999977777765554444346788999999832 33221
Q ss_pred C-c---------ccc--------cccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHH-HHhhcCCcch
Q psy17703 469 S-K---------TII--------DNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAY-AQEHLSPTLS 529 (720)
Q Consensus 469 ~-~---------~~~--------~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~-ar~~~~p~ls 529 (720)
. + .+. ..+.|.|+|+.|+|.++.+.+...++..+.+.... ..++++|-.. +...+...++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~-~~l~~q~~~~l~~~~i~L~~t 346 (412)
T PRK05342 268 EVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPK-NALVKQYQKLFEMDGVELEFT 346 (412)
T ss_pred ccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHH-HHHHHHHHHHHHhCCcEEEEC
Confidence 0 0 000 11247999999999999999888887766655322 1344444432 3445778899
Q ss_pred HHHHHHHHHH
Q psy17703 530 EEASQRLIQT 539 (720)
Q Consensus 530 ~ea~~~l~~~ 539 (720)
+++.+.|++.
T Consensus 347 ~~al~~Ia~~ 356 (412)
T PRK05342 347 DEALEAIAKK 356 (412)
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 50
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.41 E-value=6.1e-13 Score=146.23 Aligned_cols=194 Identities=18% Similarity=0.227 Sum_probs=118.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCc-cccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQ-YTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD 423 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~-~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~ 423 (720)
..|+||+||||+|||++++++++.+.... .......+..|..+.-.....+......++.+..+.+||+||||+|++++
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 46999999999999999999998763211 11111111111100000000011111234555667889999999999987
Q ss_pred --------------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCC---CCCCCCC-----------------
Q psy17703 424 --------------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC---DSQWNTS----------------- 469 (720)
Q Consensus 424 --------------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~---~g~~~~~----------------- 469 (720)
..|++|+++||...+.+...|....-..++.+|.|+|.. .|-|.+.
T Consensus 196 ~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~ 275 (413)
T TIGR00382 196 KSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGA 275 (413)
T ss_pred hhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccc
Confidence 589999999974444444333332223578899999982 2322110
Q ss_pred --c-------ccc--------cccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHH-HHHhhcCCcchHH
Q psy17703 470 --K-------TII--------DNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIA-YAQEHLSPTLSEE 531 (720)
Q Consensus 470 --~-------~~~--------~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~-~ar~~~~p~ls~e 531 (720)
. .+. ..+.|.|+|+.|+|.++.+.+...++..+.+....+ .++++|-. ++.+.+.-.++++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n-~l~kq~~~~l~~~gi~L~~t~~ 354 (413)
T TIGR00382 276 EVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKN-ALVKQYQALFKMDNVELDFEEE 354 (413)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHH-HHHHHHHHHhccCCeEEEECHH
Confidence 0 000 122489999999999999988888777666554321 23444432 2334567788999
Q ss_pred HHHHHHHH
Q psy17703 532 ASQRLIQT 539 (720)
Q Consensus 532 a~~~l~~~ 539 (720)
+.+.|++.
T Consensus 355 a~~~Ia~~ 362 (413)
T TIGR00382 355 ALKAIAKK 362 (413)
T ss_pred HHHHHHHh
Confidence 99988865
No 51
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.40 E-value=7e-12 Score=134.38 Aligned_cols=191 Identities=22% Similarity=0.260 Sum_probs=124.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT 424 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~ 424 (720)
-|++|+||||||||++++.+++.+...... .+......+. .... +. .+..++++||||++.++++
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~--------l~~~--l~----~~~~~~vl~iDEi~~l~~~ 96 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGD--------LAAI--LT----NLEEGDVLFIDEIHRLSPA 96 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchh--------HHHH--HH----hcccCCEEEEehHhhhCHH
Confidence 489999999999999999999876432211 1100000000 0000 00 1234679999999999999
Q ss_pred HHHHHHHHHHhceEeee-ccCe-----EEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChH
Q psy17703 425 TRSILHEVMEQQTLSIA-KAGI-----ICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSE 498 (720)
Q Consensus 425 ~~~~L~e~mE~~~vsi~-k~g~-----~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~ 498 (720)
.++.|+.+|++....+- .++. ...+| .+.+++++|... .++++++|||.+++.+..++.+
T Consensus 97 ~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~li~~t~~~~-------------~l~~~l~sR~~~~~~l~~l~~~ 162 (305)
T TIGR00635 97 VEELLYPAMEDFRLDIVIGKGPSARSVRLDLP-PFTLVGATTRAG-------------MLTSPLRDRFGIILRLEFYTVE 162 (305)
T ss_pred HHHHhhHHHhhhheeeeeccCccccceeecCC-CeEEEEecCCcc-------------ccCHHHHhhcceEEEeCCCCHH
Confidence 99999999987664321 1111 11223 477777777542 4788999999888888877766
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCC
Q psy17703 499 QFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSET 578 (720)
Q Consensus 499 ~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~ 578 (720)
+....+. .........+++++.+.|.+.. ..+||.+..+++.+...|.......
T Consensus 163 e~~~il~-------------~~~~~~~~~~~~~al~~ia~~~-------------~G~pR~~~~ll~~~~~~a~~~~~~~ 216 (305)
T TIGR00635 163 ELAEIVS-------------RSAGLLNVEIEPEAALEIARRS-------------RGTPRIANRLLRRVRDFAQVRGQKI 216 (305)
T ss_pred HHHHHHH-------------HHHHHhCCCcCHHHHHHHHHHh-------------CCCcchHHHHHHHHHHHHHHcCCCC
Confidence 5433332 1112235678899888877431 1235888888887777777666677
Q ss_pred CCHHhHHHHHHH
Q psy17703 579 VEVQDVDEAWRL 590 (720)
Q Consensus 579 V~~~Dv~~Ai~l 590 (720)
++.+++..++..
T Consensus 217 it~~~v~~~l~~ 228 (305)
T TIGR00635 217 INRDIALKALEM 228 (305)
T ss_pred cCHHHHHHHHHH
Confidence 999999988764
No 52
>KOG0734|consensus
Probab=99.40 E-value=1e-12 Score=142.37 Aligned_cols=263 Identities=23% Similarity=0.281 Sum_probs=154.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC-CCccccCCcccc--ccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP-RSQYTSGKGSSA--VGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD 423 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p-r~~~~~g~~ss~--~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~ 423 (720)
-|||+||||||||.|||++|..+. +..|.+|.+... +|..|..+++-+. .+- .-...|+||||+|....
T Consensus 339 GVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~-----aAk---~~APcIIFIDEiDavG~ 410 (752)
T KOG0734|consen 339 GVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFA-----AAK---ARAPCIIFIDEIDAVGG 410 (752)
T ss_pred ceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHH-----HHH---hcCCeEEEEechhhhcc
Confidence 799999999999999999999773 455666665443 4444443333211 000 01257999999998642
Q ss_pred ----HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeEEEecCCCh
Q psy17703 424 ----TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLIFLLLDPQS 497 (720)
Q Consensus 424 ----~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli~~l~d~~~ 497 (720)
.++....+.+.|--+.. +|. .-|..+.||||+|-.+ .|++||++ |||..+.++.|+-
T Consensus 411 kR~~~~~~y~kqTlNQLLvEm--DGF--~qNeGiIvigATNfpe-------------~LD~AL~RPGRFD~~v~Vp~PDv 473 (752)
T KOG0734|consen 411 KRNPSDQHYAKQTLNQLLVEM--DGF--KQNEGIIVIGATNFPE-------------ALDKALTRPGRFDRHVTVPLPDV 473 (752)
T ss_pred cCCccHHHHHHHHHHHHHHHh--cCc--CcCCceEEEeccCChh-------------hhhHHhcCCCccceeEecCCCCc
Confidence 22222222222211111 222 2356789999999665 58888888 9999999988877
Q ss_pred HHHHHHHHhhc---------ch------------hHH--------------------HHHHHHHHhhc-------CCcch
Q psy17703 498 EQFDARLARHL---------DI------------TVL--------------------RDYIAYAQEHL-------SPTLS 529 (720)
Q Consensus 498 ~~~d~~la~~i---------~~------------~~l--------------------~~~i~~ar~~~-------~p~ls 529 (720)
.-+.+++..|+ |. ..| -+++.+||.++ ...++
T Consensus 474 ~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrIlMG~ERks~~i~ 553 (752)
T KOG0734|consen 474 RGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRILMGPERKSMVID 553 (752)
T ss_pred ccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhheeecccccccccC
Confidence 77777776665 00 011 12333444332 12334
Q ss_pred HHHHHH---------HHHHHHH--h---------hhcCC-------CCCCcccCHHHHHHHHH------HHHHHHHHcCC
Q psy17703 530 EEASQR---------LIQTYVD--M---------RKLGA-------GRGRISAYPRQLESLIR------LSEAHAKMRYS 576 (720)
Q Consensus 530 ~ea~~~---------l~~~y~~--l---------r~~~~-------~~~~~~~t~R~le~lir------la~A~A~l~~~ 576 (720)
+++... |+.+|.+ + |..+. ....+.+|.+|+.+.+. +||.+ +-+.
T Consensus 554 ~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~LPe~D~~~~Tk~q~LA~lDV~MGGRvAEEL--IfG~ 631 (752)
T KOG0734|consen 554 EEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQLPEKDRYSITKAQLLARLDVCMGGRVAEEL--IFGT 631 (752)
T ss_pred hhhhhhhhhhccCceEEEeecCCCccccceeeccCCccccceeecCccchhhHHHHHHHHHHHHhhcchHHHHH--hccC
Confidence 444322 2222221 0 00000 12235577788877663 44433 4566
Q ss_pred CCCCH---HhHHHHHHHHHHHHHHhccCCCCCcceeeeeccCCCHHHHHHHHHHHHHHHHHHHH
Q psy17703 577 ETVEV---QDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLELTAALKKLVIL 637 (720)
Q Consensus 577 ~~V~~---~Dv~~Ai~l~~~~l~~~~~d~~~g~~d~~~~~~g~~~~~~~~~~~~~~~i~~~~~~ 637 (720)
+.||. .|+..|-.+-+.+..+.++...-|..++..-..+.+.+- ..++-+.+.|+.++++
T Consensus 632 D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~~~s~~~-~t~~lidaEi~~lL~~ 694 (752)
T KOG0734|consen 632 DKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDNSSSLSP-RTQELIDAEIKRLLRD 694 (752)
T ss_pred CcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCCCCCCCc-hhHHHHHHHHHHHHHH
Confidence 77876 699999999999999999877777776654333333332 2334566777777776
No 53
>PF14551 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1LTL_E.
Probab=99.38 E-value=7.3e-13 Score=122.01 Aligned_cols=97 Identities=26% Similarity=0.473 Sum_probs=77.9
Q ss_pred chhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhh--------Ccc-cccccceEEE
Q psy17703 176 IRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFER--------HPA-AVLEHQIQVR 246 (720)
Q Consensus 176 ~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~--------~~~-~~~~~~~~~~ 246 (720)
..|...+++|...+..+|.|||+||..||++||..|+++|.+++++|++|+++++.+. .+. ......++++
T Consensus 16 ~~Y~~~l~~~~~~~~~~l~Vd~~dL~~f~~~L~~~l~~~P~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 95 (121)
T PF14551_consen 16 PKYMDQLREMIQRNKKSLYVDLDDLREFDPDLAEALIENPYRYLPLFEEALKEVVKELFPSEQQSSFPPELKRRKEIQVR 95 (121)
T ss_dssp -CCHHHHHHHHHHT-SCEEEEHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHCHHTT----------GCCTTTS--EEE
T ss_pred hHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhccceeEEEE
Confidence 4567789999999999999999999999999999999999999999999999988652 222 2234689999
Q ss_pred ecCCccccccccCCCcCCCceEEEee
Q psy17703 247 PFNAKKTRNLRHLNPEDIDQLITING 272 (720)
Q Consensus 247 ~~~~~~~~~~r~l~~~~i~~lv~v~G 272 (720)
+.|.+...++|+|++++|||||+|+|
T Consensus 96 ~~~~~~~~~iR~L~s~~igkLV~v~G 121 (121)
T PF14551_consen 96 FYNLPKSTSIRELRSSHIGKLVSVSG 121 (121)
T ss_dssp EES-S-EE-GGG-SGGGTTSEEEEEE
T ss_pred EcCCCCCcCcCCCChHHCCCEEEEeC
Confidence 99999999999999999999999998
No 54
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.4e-12 Score=146.85 Aligned_cols=170 Identities=24% Similarity=0.333 Sum_probs=105.3
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCcc--cccee----eecceeee------cCCcee
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPE--TRQMV----LQTGALVL------ADSGVC 413 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~--~~~~~----~~~G~l~l------ad~gI~ 413 (720)
.=+||+||||+|||+|++++|+.+.|-.+--..| |+ +|.. -|... --||.+.. ..+-++
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLG----Gv-----rDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~ 421 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLG----GV-----RDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVF 421 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecC----cc-----ccHHHhccccccccccCChHHHHHHHHhCCcCCeE
Confidence 4589999999999999999999998764432111 11 1210 01110 12444432 245689
Q ss_pred eccccccCChHH----HHHHHHHHH-hceEeeeccCeEEeec-CceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703 414 CIDEFDKMSDTT----RSILHEVME-QQTLSIAKAGIICQLN-ARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD 487 (720)
Q Consensus 414 ~IDEidkm~~~~----~~~L~e~mE-~~~vsi~k~g~~~~l~-a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd 487 (720)
+|||+|||+.+. -++|+|+++ +|..++...-....+. +++.+|||||... .+|.||++|..
T Consensus 422 LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~-------------tIP~PLlDRME 488 (782)
T COG0466 422 LLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD-------------TIPAPLLDRME 488 (782)
T ss_pred EeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc-------------cCChHHhccee
Confidence 999999998765 469999995 3444443333333332 5789999999654 59999999998
Q ss_pred eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Q psy17703 488 LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYV 541 (720)
Q Consensus 488 li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~ 541 (720)
++.+.....++..++-.+|+-...+++ ..-..-.-.++++|...|+++|.
T Consensus 489 -iI~lsgYt~~EKl~IAk~~LiPk~~~~---~gL~~~el~i~d~ai~~iI~~YT 538 (782)
T COG0466 489 -VIRLSGYTEDEKLEIAKRHLIPKQLKE---HGLKKGELTITDEAIKDIIRYYT 538 (782)
T ss_pred -eeeecCCChHHHHHHHHHhcchHHHHH---cCCCccceeecHHHHHHHHHHHh
Confidence 455554444443333334442222221 00011234689999999999997
No 55
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.36 E-value=4.2e-12 Score=137.74 Aligned_cols=204 Identities=17% Similarity=0.144 Sum_probs=136.1
Q ss_pred cCCCCccEEEEcCCCCHHHHHHHHHHhhCCCC---cc---ccCCcccc-ccc-cceeecCccccceeeecceeeecCCce
Q psy17703 341 ETPAEINILLCGDPGTSKSQLLSYVYDLVPRS---QY---TSGKGSSA-VGL-TAYITKDPETRQMVLQTGALVLADSGV 412 (720)
Q Consensus 341 E~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~---~~---~~g~~ss~-~gl-ta~~~~~~~~~~~~~~~G~l~lad~gI 412 (720)
-+|.+.|||+.|++||||+.+|+.++....+. .+ .++.-+.. ..+ .-+..+...+|...-++|.+..|+||+
T Consensus 97 ~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGt 176 (403)
T COG1221 97 YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGT 176 (403)
T ss_pred hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCE
Confidence 45688999999999999999999999876652 11 11110000 000 111223335666677899999999999
Q ss_pred eeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc-cceeEEE
Q psy17703 413 CCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS-RFDLIFL 491 (720)
Q Consensus 413 ~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls-RFdli~~ 491 (720)
+|+||+..|++..|..|+.+||++.+.- -|.....+.++.+++|+|-...+ .+.-...|++ |+.+++.
T Consensus 177 LfLDEI~~LP~~~Q~kLl~~le~g~~~r--vG~~~~~~~dVRli~AT~~~l~~---------~~~~g~dl~~rl~~~~I~ 245 (403)
T COG1221 177 LFLDEIHRLPPEGQEKLLRVLEEGEYRR--VGGSQPRPVDVRLICATTEDLEE---------AVLAGADLTRRLNILTIT 245 (403)
T ss_pred EehhhhhhCCHhHHHHHHHHHHcCceEe--cCCCCCcCCCceeeeccccCHHH---------HHHhhcchhhhhcCceec
Confidence 9999999999999999999999998863 66688889999999999854321 1111135555 6666666
Q ss_pred ecCCChHHHHHHHHhhcchhHHHHHH-HHHHhhc--CCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703 492 LLDPQSEQFDARLARHLDITVLRDYI-AYAQEHL--SPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE 568 (720)
Q Consensus 492 l~d~~~~~~d~~la~~i~~~~l~~~i-~~ar~~~--~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~ 568 (720)
+++......|.. .++.-|+ .++++.- .+..++++...+..| +++.+.|+|+.++..+-
T Consensus 246 LPpLrER~~Di~-------~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y------------~~pGNirELkN~Ve~~~ 306 (403)
T COG1221 246 LPPLRERKEDIL-------LLAEHFLKSEARRLGLPLSVDSPEALRALLAY------------DWPGNIRELKNLVERAV 306 (403)
T ss_pred CCChhhchhhHH-------HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC------------CCCCcHHHHHHHHHHHH
Confidence 665544322211 1112222 2344322 233456777777654 57888999999999988
Q ss_pred HHHHHc
Q psy17703 569 AHAKMR 574 (720)
Q Consensus 569 A~A~l~ 574 (720)
+.+...
T Consensus 307 ~~~~~~ 312 (403)
T COG1221 307 AQASGE 312 (403)
T ss_pred HHhccc
Confidence 887655
No 56
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.36 E-value=7.7e-12 Score=131.11 Aligned_cols=189 Identities=19% Similarity=0.203 Sum_probs=111.4
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCC-ccccCCc--cccccccceeecCccccceee-ecceeeecCCceeeccccc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRS-QYTSGKG--SSAVGLTAYITKDPETRQMVL-QTGALVLADSGVCCIDEFD 419 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g~~--ss~~glta~~~~~~~~~~~~~-~~G~l~lad~gI~~IDEid 419 (720)
...|+||+||||||||++|+++++.+... ....+.- .....+.... .++... -.+.+..+.+||+||||++
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~-----~g~~~~~~~~~~~~a~~~VL~IDE~~ 115 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEY-----IGHTAQKTREVIKKALGGVLFIDEAY 115 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhh-----ccchHHHHHHHHHhccCCEEEEechh
Confidence 45799999999999999999999865211 0000000 0000000000 000000 0122334568999999999
Q ss_pred cCC--------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEE
Q psy17703 420 KMS--------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFL 491 (720)
Q Consensus 420 km~--------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~ 491 (720)
.+. .+.+..|+..||+.. .++.++++.+|.... .-..++|+|.+||+..+.
T Consensus 116 ~L~~~~~~~~~~~~i~~Ll~~~e~~~-------------~~~~vila~~~~~~~--------~~~~~~p~L~sRf~~~i~ 174 (261)
T TIGR02881 116 SLARGGEKDFGKEAIDTLVKGMEDNR-------------NEFVLILAGYSDEMD--------YFLSLNPGLRSRFPISID 174 (261)
T ss_pred hhccCCccchHHHHHHHHHHHHhccC-------------CCEEEEecCCcchhH--------HHHhcChHHHhccceEEE
Confidence 876 345677888887542 335666666553311 112478999999998889
Q ss_pred ecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHH
Q psy17703 492 LLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHA 571 (720)
Q Consensus 492 l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A 571 (720)
+.++..++....+. .++ + .....+++++.+.+.+++..++... ..-..+.|.+..++..|..+.
T Consensus 175 f~~~~~~el~~Il~---------~~~---~-~~~~~l~~~a~~~l~~~~~~~~~~~---~~~~gn~R~~~n~~e~a~~~~ 238 (261)
T TIGR02881 175 FPDYTVEELMEIAE---------RMV---K-EREYKLTEEAKWKLREHLYKVDQLS---SREFSNARYVRNIIEKAIRRQ 238 (261)
T ss_pred ECCCCHHHHHHHHH---------HHH---H-HcCCccCHHHHHHHHHHHHHHHhcc---CCCCchHHHHHHHHHHHHHHH
Confidence 98877655433322 222 2 2345689999998888776655311 122345688888887766555
Q ss_pred HHc
Q psy17703 572 KMR 574 (720)
Q Consensus 572 ~l~ 574 (720)
..+
T Consensus 239 ~~r 241 (261)
T TIGR02881 239 AVR 241 (261)
T ss_pred HHH
Confidence 433
No 57
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.34 E-value=9.2e-12 Score=134.52 Aligned_cols=200 Identities=20% Similarity=0.218 Sum_probs=130.3
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCC--ccc--cCCccccccccc---eeecCccccceeeecceeeecCCceeecc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRS--QYT--SGKGSSAVGLTA---YITKDPETRQMVLQTGALVLADSGVCCID 416 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~--~~~--~g~~ss~~glta---~~~~~~~~~~~~~~~G~l~lad~gI~~ID 416 (720)
.+.||||.|+|||||+.+|++++...++. .+. .....+..-+.. +..+...++.....+|.+..+++|++|||
T Consensus 28 ~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~ 107 (326)
T PRK11608 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLD 107 (326)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccCCCeEEeC
Confidence 57899999999999999999999887642 111 111110000000 00011112222234678889999999999
Q ss_pred ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce-eEEEecCC
Q psy17703 417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD-LIFLLLDP 495 (720)
Q Consensus 417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd-li~~l~d~ 495 (720)
|++.|+...|..|+.+++.+.+.- .|.....+.++.+|+++|.... .+...-.+.+.|+.||. ..+.+++.
T Consensus 108 ~i~~L~~~~Q~~L~~~l~~~~~~~--~g~~~~~~~~~RiI~~s~~~l~------~l~~~g~f~~dL~~~l~~~~i~lPpL 179 (326)
T PRK11608 108 ELATAPMLVQEKLLRVIEYGELER--VGGSQPLQVNVRLVCATNADLP------AMVAEGKFRADLLDRLAFDVVQLPPL 179 (326)
T ss_pred ChhhCCHHHHHHHHHHHhcCcEEe--CCCCceeeccEEEEEeCchhHH------HHHHcCCchHHHHHhcCCCEEECCCh
Confidence 999999999999999999887543 5656677888999999986431 11223358889999996 45555554
Q ss_pred ChHHHHHHHHhhcchhHHHHHHHHH-Hhh---cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703 496 QSEQFDARLARHLDITVLRDYIAYA-QEH---LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH 570 (720)
Q Consensus 496 ~~~~~d~~la~~i~~~~l~~~i~~a-r~~---~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~ 570 (720)
.+...| |. .++..|+... ++. +.+.+++++.+.|..| +||.+.|+|+.+++-+-..
T Consensus 180 ReR~eD--I~-----~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y------------~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 180 RERQSD--IM-----LMAEHFAIQMCRELGLPLFPGFTERARETLLNY------------RWPGNIRELKNVVERSVYR 239 (326)
T ss_pred hhhhhh--HH-----HHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhC------------CCCcHHHHHHHHHHHHHHh
Confidence 333222 11 1233334332 221 1257999999988755 5888999999988765443
No 58
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.34 E-value=5.1e-12 Score=133.82 Aligned_cols=189 Identities=19% Similarity=0.127 Sum_probs=114.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccce-eeecceeeecCCceeeccccccC--
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQM-VLQTGALVLADSGVCCIDEFDKM-- 421 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~-~~~~G~l~lad~gI~~IDEidkm-- 421 (720)
..|+||+||||||||++|+++++.+...-+.... ..+..+....-....++. ....+.+..+.+|++||||++.+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~--~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~ 135 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKG--HLVSVTRDDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYR 135 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccc--eEEEecHHHHhHhhcccchHHHHHHHHHccCcEEEEechhhhcc
Confidence 5799999999999999998888866321110000 000000000000000000 00112344467899999999977
Q ss_pred -------ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecC
Q psy17703 422 -------SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLD 494 (720)
Q Consensus 422 -------~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d 494 (720)
+.+.++.|++.|+++. .++.+|+|+++.. ...-+.+.|+|.+||+..+.+++
T Consensus 136 ~~~~~~~~~~~~~~Ll~~le~~~-------------~~~~vI~a~~~~~--------~~~~~~~np~L~sR~~~~i~fp~ 194 (284)
T TIGR02880 136 PDNERDYGQEAIEILLQVMENQR-------------DDLVVILAGYKDR--------MDSFFESNPGFSSRVAHHVDFPD 194 (284)
T ss_pred CCCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHH--------HHHHHhhCHHHHhhCCcEEEeCC
Confidence 3456788999998642 3567888876531 11123568999999999999998
Q ss_pred CChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHc
Q psy17703 495 PQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMR 574 (720)
Q Consensus 495 ~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~ 574 (720)
+..++....+. .++. + ....+++++.+.+.++....+ ..+++.+.|.+..++.-+......|
T Consensus 195 l~~edl~~I~~---------~~l~---~-~~~~l~~~a~~~L~~~l~~~~-----~~~~~GN~R~lrn~ve~~~~~~~~r 256 (284)
T TIGR02880 195 YSEAELLVIAG---------LMLK---E-QQYRFSAEAEEAFADYIALRR-----TQPHFANARSIRNAIDRARLRQANR 256 (284)
T ss_pred cCHHHHHHHHH---------HHHH---H-hccccCHHHHHHHHHHHHHhC-----CCCCCChHHHHHHHHHHHHHHHHHH
Confidence 87655433322 2222 2 346788888888877554332 2357788899999887665554444
No 59
>CHL00181 cbbX CbbX; Provisional
Probab=99.34 E-value=5.5e-12 Score=133.59 Aligned_cols=181 Identities=19% Similarity=0.174 Sum_probs=109.7
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCC--ccccccccceeecCcccccee-eecceeeecCCceeeccccc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGK--GSSAVGLTAYITKDPETRQMV-LQTGALVLADSGVCCIDEFD 419 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~--~ss~~glta~~~~~~~~~~~~-~~~G~l~lad~gI~~IDEid 419 (720)
...|+||+||||||||++|+++++.+...-+. .+. ..+...+.... .++.. ...+.+..+.+||+||||++
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~-----~g~~~~~~~~~l~~a~ggVLfIDE~~ 132 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQY-----IGHTAPKTKEVLKKAMGGVLFIDEAY 132 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHH-----hccchHHHHHHHHHccCCEEEEEccc
Confidence 35799999999999999999998865321110 110 00000010000 01000 00123344678999999999
Q ss_pred cC---------ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703 420 KM---------SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF 490 (720)
Q Consensus 420 km---------~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~ 490 (720)
.+ ..+.+..|+..||... .++.||+|+++.. +..-..++|+|.+||+.++
T Consensus 133 ~l~~~~~~~~~~~e~~~~L~~~me~~~-------------~~~~vI~ag~~~~--------~~~~~~~np~L~sR~~~~i 191 (287)
T CHL00181 133 YLYKPDNERDYGSEAIEILLQVMENQR-------------DDLVVIFAGYKDR--------MDKFYESNPGLSSRIANHV 191 (287)
T ss_pred hhccCCCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHH--------HHHHHhcCHHHHHhCCceE
Confidence 86 4567788999998642 3466777766431 1122356799999999999
Q ss_pred EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703 491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE 568 (720)
Q Consensus 491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~ 568 (720)
.+.+++.++....+. .++ ++ ....+++++.+.+.+++.+.+. .+...+.|.+..++.-+.
T Consensus 192 ~F~~~t~~el~~I~~---------~~l---~~-~~~~l~~~~~~~L~~~i~~~~~-----~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 192 DFPDYTPEELLQIAK---------IML---EE-QQYQLTPEAEKALLDYIKKRME-----QPLFANARSVRNALDRAR 251 (287)
T ss_pred EcCCcCHHHHHHHHH---------HHH---HH-hcCCCChhHHHHHHHHHHHhCC-----CCCCccHHHHHHHHHHHH
Confidence 999998766543333 222 21 3556788888777776654332 234455688888776433
No 60
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.32 E-value=2.2e-11 Score=138.57 Aligned_cols=222 Identities=15% Similarity=0.126 Sum_probs=135.2
Q ss_pred CCCccEEEEcCCCCHHHHHHHHHHhh--------CCCC--ccc--cCCcccccccc---ceeecCccccce-eeecceee
Q psy17703 343 PAEINILLCGDPGTSKSQLLSYVYDL--------VPRS--QYT--SGKGSSAVGLT---AYITKDPETRQM-VLQTGALV 406 (720)
Q Consensus 343 pg~i~vLL~G~PGtGKS~ll~~va~~--------~pr~--~~~--~g~~ss~~glt---a~~~~~~~~~~~-~~~~G~l~ 406 (720)
+.+.+|||.|+|||||+.+|++++.. .++. .+. ........-+. .+......++.. .-++|.+.
T Consensus 240 ~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e 319 (538)
T PRK15424 240 RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 319 (538)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchh
Confidence 36789999999999999999999987 4432 111 00000000000 000011112221 13568888
Q ss_pred ecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703 407 LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF 486 (720)
Q Consensus 407 lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF 486 (720)
.|++|.+||||++.|+...|..|+.+++++.+.- .|.....+.++.+|+|+|.... .....-.+.+.|+.|+
T Consensus 320 ~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r--~G~~~~~~~dvRiIaat~~~L~------~~v~~g~Fr~dL~yrL 391 (538)
T PRK15424 320 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR--VGGHQPVPVDVRVISATHCDLE------EDVRQGRFRRDLFYRL 391 (538)
T ss_pred ccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEe--cCCCceeccceEEEEecCCCHH------HHHhcccchHHHHHHh
Confidence 9999999999999999999999999999988764 6777788899999999985431 1222335777888898
Q ss_pred ee-EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703 487 DL-IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR 565 (720)
Q Consensus 487 dl-i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir 565 (720)
.. .+.+++. .++.+-|. .+.+.|+..........+++++...+.+....|.. -+||.+.|+|+.+++
T Consensus 392 ~~~~I~lPPL--ReR~eDI~-----~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~-----y~WPGNvREL~nvie 459 (538)
T PRK15424 392 SILRLQLPPL--RERVADIL-----PLAESFLKQSLAALSAPFSAALRQGLQQCETLLLH-----YDWPGNVRELRNLME 459 (538)
T ss_pred cCCeecCCCh--hhchhHHH-----HHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHh-----CCCCchHHHHHHHHH
Confidence 73 3334333 22221121 23344444432233445888877655544433333 268999999999887
Q ss_pred HHHHHHHHcCCCCCCHHhH
Q psy17703 566 LSEAHAKMRYSETVEVQDV 584 (720)
Q Consensus 566 la~A~A~l~~~~~V~~~Dv 584 (720)
-+-..+.-.....++.+++
T Consensus 460 r~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 460 RLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred HHHHhcCCCCcCccCHHHh
Confidence 5544322111234555554
No 61
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=8.8e-12 Score=130.46 Aligned_cols=186 Identities=23% Similarity=0.265 Sum_probs=116.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCc-cccCCc--cccccccceeecCccccceeeecceeeec---CCceeeccccc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQ-YTSGKG--SSAVGLTAYITKDPETRQMVLQTGALVLA---DSGVCCIDEFD 419 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~-~~~g~~--ss~~glta~~~~~~~~~~~~~~~G~l~la---d~gI~~IDEid 419 (720)
--|||+||||||||.||+++|+...... ...|.+ ...+|..+-.+++ .+.+| ...|+||||||
T Consensus 186 KGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRe-----------lF~lArekaPsIIFiDEID 254 (406)
T COG1222 186 KGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRE-----------LFELAREKAPSIIFIDEID 254 (406)
T ss_pred CceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHH-----------HHHHHhhcCCeEEEEechh
Confidence 3799999999999999999998654211 111110 0112222222221 11222 24799999999
Q ss_pred cCC-----------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703 420 KMS-----------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF 486 (720)
Q Consensus 420 km~-----------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF 486 (720)
.+. .+.|-.|+|.+.|- +|... ..++-||+|+|... .|+||||+ ||
T Consensus 255 AIg~kR~d~~t~gDrEVQRTmleLL~ql------DGFD~--~~nvKVI~ATNR~D-------------~LDPALLRPGR~ 313 (406)
T COG1222 255 AIGAKRFDSGTSGDREVQRTMLELLNQL------DGFDP--RGNVKVIMATNRPD-------------ILDPALLRPGRF 313 (406)
T ss_pred hhhcccccCCCCchHHHHHHHHHHHHhc------cCCCC--CCCeEEEEecCCcc-------------ccChhhcCCCcc
Confidence 863 34577788887653 23221 35688999999765 58999999 99
Q ss_pred eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703 487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL 566 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl 566 (720)
|-.+.++.|..+.+.+++.-|- .+-++.+.+.-+. |+ .+ ..+ .|--++.++..-
T Consensus 314 DRkIEfplPd~~gR~~Il~IHt-----------rkM~l~~dvd~e~---la----~~------~~g--~sGAdlkaictE 367 (406)
T COG1222 314 DRKIEFPLPDEEGRAEILKIHT-----------RKMNLADDVDLEL---LA----RL------TEG--FSGADLKAICTE 367 (406)
T ss_pred cceeecCCCCHHHHHHHHHHHh-----------hhccCccCcCHHH---HH----Hh------cCC--CchHHHHHHHHH
Confidence 9999999887766665555442 0111112111111 11 00 111 223678888888
Q ss_pred HHHHHHHcCCCCCCHHhHHHHHH
Q psy17703 567 SEAHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 567 a~A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
|--.|--+.|..||.+|..+|++
T Consensus 368 AGm~AiR~~R~~Vt~~DF~~Av~ 390 (406)
T COG1222 368 AGMFAIRERRDEVTMEDFLKAVE 390 (406)
T ss_pred HhHHHHHhccCeecHHHHHHHHH
Confidence 88888888999999999999976
No 62
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.32 E-value=1.9e-11 Score=139.16 Aligned_cols=224 Identities=18% Similarity=0.176 Sum_probs=140.4
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCc--cc--cCCcccccccc---ceeecCccccce-eeecceeeecCCceeec
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ--YT--SGKGSSAVGLT---AYITKDPETRQM-VLQTGALVLADSGVCCI 415 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~--~~--~g~~ss~~glt---a~~~~~~~~~~~-~~~~G~l~lad~gI~~I 415 (720)
.+.||||.|++||||+.+|++++...++.. +. ........-+. .+......++.. .-.+|.+..|++|.+||
T Consensus 234 ~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfL 313 (526)
T TIGR02329 234 SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFL 313 (526)
T ss_pred CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcCCceEEe
Confidence 678999999999999999999998775521 11 11000000000 000111112211 13567888899999999
Q ss_pred cccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce-eEEEecC
Q psy17703 416 DEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD-LIFLLLD 494 (720)
Q Consensus 416 DEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd-li~~l~d 494 (720)
||++.|+.+.|..|+++++++.+.- .|.....+.++.+|+|+|.... .....-.+...|+.|+. +.+.+++
T Consensus 314 deI~~Lp~~~Q~~Ll~~L~~~~~~r--~g~~~~~~~dvRiIaat~~~l~------~~v~~g~fr~dL~~rL~~~~I~lPP 385 (526)
T TIGR02329 314 DEIGEMPLPLQTRLLRVLEEREVVR--VGGTEPVPVDVRVVAATHCALT------TAVQQGRFRRDLFYRLSILRIALPP 385 (526)
T ss_pred cChHhCCHHHHHHHHHHHhcCcEEe--cCCCceeeecceEEeccCCCHH------HHhhhcchhHHHHHhcCCcEEeCCC
Confidence 9999999999999999999887653 5666677889999999985531 11223357788888987 4455554
Q ss_pred CChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHc
Q psy17703 495 PQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMR 574 (720)
Q Consensus 495 ~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~ 574 (720)
..+...| |. .+.+.|+..........+++++.+.+...+-.|.. -+||.+.|+|+.+++-+-..+...
T Consensus 386 LReR~eD--I~-----~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~-----y~WPGNvrEL~nvier~~i~~~~~ 453 (526)
T TIGR02329 386 LRERPGD--IL-----PLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQR-----YPWPGNVRELRNLVERLALELSAM 453 (526)
T ss_pred chhchhH--HH-----HHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHh-----CCCCchHHHHHHHHHHHHHhcccC
Confidence 4332222 11 23344444433333445888888875444333332 268999999999887655443222
Q ss_pred CCCCCCHHhHHHH
Q psy17703 575 YSETVEVQDVDEA 587 (720)
Q Consensus 575 ~~~~V~~~Dv~~A 587 (720)
....++.+|+...
T Consensus 454 ~~~~I~~~~l~~~ 466 (526)
T TIGR02329 454 PAGALTPDVLRAL 466 (526)
T ss_pred CCCccCHHHhhhh
Confidence 2356788776543
No 63
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.31 E-value=4.7e-12 Score=126.75 Aligned_cols=188 Identities=22% Similarity=0.275 Sum_probs=113.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCc--cccceeeecceeeecCCceeeccccccCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDP--ETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~--~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
.-|||++||||||||++|+++++.+.-..+ ..+....+|.. +.|. ..++..-++. .+...|+||||+|.+.
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp~l-~vkat~liGeh---VGdgar~Ihely~rA~---~~aPcivFiDE~DAia 223 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVPLL-LVKATELIGEH---VGDGARRIHELYERAR---KAAPCIVFIDELDAIA 223 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCceE-EechHHHHHHH---hhhHHHHHHHHHHHHH---hcCCeEEEehhhhhhh
Confidence 469999999999999999999986632221 11222222211 1111 0011111111 2346899999999875
Q ss_pred hH------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703 423 DT------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF 490 (720)
Q Consensus 423 ~~------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~ 490 (720)
-+ ..++|+.-|+ |+. -+-.+..|||+|... -|++++.|||.--+
T Consensus 224 LdRryQelRGDVsEiVNALLTelD---------gi~--eneGVvtIaaTN~p~-------------~LD~aiRsRFEeEI 279 (368)
T COG1223 224 LDRRYQELRGDVSEIVNALLTELD---------GIK--ENEGVVTIAATNRPE-------------LLDPAIRSRFEEEI 279 (368)
T ss_pred hhhhHHHhcccHHHHHHHHHHhcc---------Ccc--cCCceEEEeecCChh-------------hcCHHHHhhhhhee
Confidence 43 2346665553 322 244567788888554 58999999999888
Q ss_pred EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHH-HHHHHHHHH
Q psy17703 491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQL-ESLIRLSEA 569 (720)
Q Consensus 491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~l-e~lirla~A 569 (720)
.+.-|.+++....+.. |++..--| +... .+.+. . +. .++ |-|.+ +.+++-|--
T Consensus 280 EF~LP~~eEr~~ile~------------y~k~~Plp-v~~~-~~~~~----~-~t-----~g~--SgRdikekvlK~aLh 333 (368)
T COG1223 280 EFKLPNDEERLEILEY------------YAKKFPLP-VDAD-LRYLA----A-KT-----KGM--SGRDIKEKVLKTALH 333 (368)
T ss_pred eeeCCChHHHHHHHHH------------HHHhCCCc-cccC-HHHHH----H-Hh-----CCC--CchhHHHHHHHHHHH
Confidence 8888888876555442 33332111 1111 11111 1 11 112 22655 578888888
Q ss_pred HHHHcCCCCCCHHhHHHHHH
Q psy17703 570 HAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 570 ~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
.|-.++++.|+.+|++.|+.
T Consensus 334 ~Ai~ed~e~v~~edie~al~ 353 (368)
T COG1223 334 RAIAEDREKVEREDIEKALK 353 (368)
T ss_pred HHHHhchhhhhHHHHHHHHH
Confidence 88899999999999999965
No 64
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.31 E-value=1.2e-11 Score=131.56 Aligned_cols=166 Identities=25% Similarity=0.310 Sum_probs=104.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCccccccccceeecCccccceeeecceee-ecCCceeeccccccCCh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYITKDPETRQMVLQTGALV-LADSGVCCIDEFDKMSD 423 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~~~~~~~~~~~~~~G~l~-lad~gI~~IDEidkm~~ 423 (720)
.+++|+||||||||+|++.++......... +...+....+ ++..-++-... ...+-|+||||++++++
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdl----------r~i~e~a~~~~~~gr~tiLflDEIHRfnK 118 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDL----------REIIEEARKNRLLGRRTILFLDEIHRFNK 118 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHH----------HHHHHHHHHHHhcCCceEEEEehhhhcCh
Confidence 589999999999999999999876543222 1111111111 11111110111 11245899999999999
Q ss_pred HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecc--cCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHH
Q psy17703 424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAA--NPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFD 501 (720)
Q Consensus 424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaa--Np~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d 501 (720)
..|++|+..||.+++.+ |||+ ||.+ .+.++|+||.- +|.+.+...++..
T Consensus 119 ~QQD~lLp~vE~G~iil---------------IGATTENPsF-------------~ln~ALlSR~~-vf~lk~L~~~di~ 169 (436)
T COG2256 119 AQQDALLPHVENGTIIL---------------IGATTENPSF-------------ELNPALLSRAR-VFELKPLSSEDIK 169 (436)
T ss_pred hhhhhhhhhhcCCeEEE---------------EeccCCCCCe-------------eecHHHhhhhh-eeeeecCCHHHHH
Confidence 99999999999998764 5555 6554 68999999995 8999988888776
Q ss_pred HHHHhhcchhHHHHHHHHHHh--hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHH
Q psy17703 502 ARLARHLDITVLRDYIAYAQE--HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHA 571 (720)
Q Consensus 502 ~~la~~i~~~~l~~~i~~ar~--~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A 571 (720)
..+.+-+ ...-+. ...+.+++++.+.++..- . ...|....++.++.-.+
T Consensus 170 ~~l~ra~--------~~~~rgl~~~~~~i~~~a~~~l~~~s----~---------GD~R~aLN~LE~~~~~~ 220 (436)
T COG2256 170 KLLKRAL--------LDEERGLGGQIIVLDEEALDYLVRLS----N---------GDARRALNLLELAALSA 220 (436)
T ss_pred HHHHHHH--------hhhhcCCCcccccCCHHHHHHHHHhc----C---------chHHHHHHHHHHHHHhc
Confidence 5555311 000110 113457788888776431 1 12366666666665444
No 65
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.29 E-value=3.1e-11 Score=138.26 Aligned_cols=202 Identities=19% Similarity=0.231 Sum_probs=133.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCc----cccCCccccc--c-ccceeecCccccceeeecceeeecCCceeecc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ----YTSGKGSSAV--G-LTAYITKDPETRQMVLQTGALVLADSGVCCID 416 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~----~~~g~~ss~~--g-lta~~~~~~~~~~~~~~~G~l~lad~gI~~ID 416 (720)
.+.||||+|++||||+.++++++...++.. .......... . ...+..+...++...-..|.+..|++|++|||
T Consensus 209 ~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ld 288 (509)
T PRK05022 209 SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLD 288 (509)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhcCCCEEEec
Confidence 678999999999999999999999887531 1111111000 0 00001111122222335677889999999999
Q ss_pred ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE-EEecCC
Q psy17703 417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI-FLLLDP 495 (720)
Q Consensus 417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli-~~l~d~ 495 (720)
|++.|+.+.|..|+.+++++.+. +.|.....+.++.+|+|+|.... .....-.+.+.|+.|+... +.+++.
T Consensus 289 eI~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~RiI~~t~~~l~------~~~~~~~f~~dL~~rl~~~~i~lPpL 360 (509)
T PRK05022 289 EIGELPLALQAKLLRVLQYGEIQ--RVGSDRSLRVDVRVIAATNRDLR------EEVRAGRFRADLYHRLSVFPLSVPPL 360 (509)
T ss_pred ChhhCCHHHHHHHHHHHhcCCEe--eCCCCcceecceEEEEecCCCHH------HHHHcCCccHHHHhcccccEeeCCCc
Confidence 99999999999999999988764 35656677789999999986431 1222335888999999743 444443
Q ss_pred ChHHHHHHHHhhcchhHHHHHHHHHHhh---cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703 496 QSEQFDARLARHLDITVLRDYIAYAQEH---LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK 572 (720)
Q Consensus 496 ~~~~~d~~la~~i~~~~l~~~i~~ar~~---~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~ 572 (720)
.+...| |. .+.+.|+...... -.+.+++++.+.|..| +||.+.|+|+.+++-+-..|.
T Consensus 361 reR~eD--I~-----~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y------------~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 361 RERGDD--VL-----LLAGYFLEQNRARLGLRSLRLSPAAQAALLAY------------DWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred hhchhh--HH-----HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC------------CCCCcHHHHHHHHHHHHHhcC
Confidence 332222 11 1233344333222 2468999999998755 688999999999987766554
No 66
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.29 E-value=2e-11 Score=145.12 Aligned_cols=214 Identities=20% Similarity=0.255 Sum_probs=122.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCc--cccccccceeecCccccceeeecceee------ecCCceeeccc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKG--SSAVGLTAYITKDPETRQMVLQTGALV------LADSGVCCIDE 417 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~--ss~~glta~~~~~~~~~~~~~~~G~l~------lad~gI~~IDE 417 (720)
-.++|+||||+|||++++.+++.+.+..+....+ .....+.+. +....+ -.+|.+. ...+.+++|||
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~--~~~~~g---~~~G~~~~~l~~~~~~~~villDE 424 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH--RRTYIG---SMPGKLIQKMAKVGVKNPLFLLDE 424 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc--hhccCC---CCCcHHHHHHHhcCCCCCEEEEEC
Confidence 3699999999999999999999887543221110 000000000 000000 1123221 12356999999
Q ss_pred cccCChHH----HHHHHHHHHh-ceEeeeccCeEEeec-CceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEE
Q psy17703 418 FDKMSDTT----RSILHEVMEQ-QTLSIAKAGIICQLN-ARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFL 491 (720)
Q Consensus 418 idkm~~~~----~~~L~e~mE~-~~vsi~k~g~~~~l~-a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~ 491 (720)
+|+++.+. .++|+++|+. +..++...-....+. .++.+|||+|.. .+|+||++||. ++.
T Consensus 425 idk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~--------------~i~~aLl~R~~-ii~ 489 (784)
T PRK10787 425 IDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM--------------NIPAPLLDRME-VIR 489 (784)
T ss_pred hhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC--------------CCCHHHhccee-eee
Confidence 99999875 4899999985 444443322222222 578899999843 39999999997 567
Q ss_pred ecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHH
Q psy17703 492 LLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHA 571 (720)
Q Consensus 492 l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A 571 (720)
+.....++......+|+....+++. ........+++++.+.+++.|. +..+. +---|.++.++|-.-+..
T Consensus 490 ~~~~t~eek~~Ia~~~L~~k~~~~~---~l~~~~l~i~~~ai~~ii~~yt--~e~Ga-----R~LeR~I~~i~r~~l~~~ 559 (784)
T PRK10787 490 LSGYTEDEKLNIAKRHLLPKQIERN---ALKKGELTVDDSAIIGIIRYYT--REAGV-----RSLEREISKLCRKAVKQL 559 (784)
T ss_pred cCCCCHHHHHHHHHHhhhHHHHHHh---CCCCCeEEECHHHHHHHHHhCC--cccCC-----cHHHHHHHHHHHHHHHHH
Confidence 7777766666555555433332221 1112356789999999998764 32221 000144444444222221
Q ss_pred HHcCC---CCCCHHhHHHHHH
Q psy17703 572 KMRYS---ETVEVQDVDEAWR 589 (720)
Q Consensus 572 ~l~~~---~~V~~~Dv~~Ai~ 589 (720)
-+... -.|+.+++.+.+.
T Consensus 560 ~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 560 LLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred HhcCCCceeeecHHHHHHHhC
Confidence 12211 2577788777654
No 67
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.28 E-value=2.2e-11 Score=140.44 Aligned_cols=212 Identities=19% Similarity=0.242 Sum_probs=137.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCC--cc--ccCCccccccccc---eeecCccccceeeecceeeecCCceeecc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRS--QY--TSGKGSSAVGLTA---YITKDPETRQMVLQTGALVLADSGVCCID 416 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~--~~--~~g~~ss~~glta---~~~~~~~~~~~~~~~G~l~lad~gI~~ID 416 (720)
.+.+|||.|++||||+.+|++++..+++. .+ ......+...+.. +..+...++.....+|.+..+++|++|||
T Consensus 218 ~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ld 297 (534)
T TIGR01817 218 SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLD 297 (534)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEe
Confidence 57899999999999999999999987642 11 1111111000000 00111122222335677888999999999
Q ss_pred ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee-EEEecCC
Q psy17703 417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL-IFLLLDP 495 (720)
Q Consensus 417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl-i~~l~d~ 495 (720)
|++.|+.+.|..|+++++++.+.- .|.....+.++.+|+|+|..... ....-.+.+.|+.|+.. .+.+++.
T Consensus 298 ei~~L~~~~Q~~Ll~~l~~~~~~~--~~~~~~~~~~~riI~~s~~~l~~------~~~~~~f~~~L~~rl~~~~i~lPpL 369 (534)
T TIGR01817 298 EIGEISPAFQAKLLRVLQEGEFER--VGGNRTLKVDVRLVAATNRDLEE------AVAKGEFRADLYYRINVVPIFLPPL 369 (534)
T ss_pred chhhCCHHHHHHHHHHHhcCcEEE--CCCCceEeecEEEEEeCCCCHHH------HHHcCCCCHHHHHHhcCCeeeCCCc
Confidence 999999999999999999887653 45555667789999999854311 22333588899999974 3444444
Q ss_pred ChHHHHHHHHhhcchhHHHHHHHHHHh--hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHH
Q psy17703 496 QSEQFDARLARHLDITVLRDYIAYAQE--HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKM 573 (720)
Q Consensus 496 ~~~~~d~~la~~i~~~~l~~~i~~ar~--~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l 573 (720)
.+...|- . .++..|+..... ...+.+++++.+.|..| +||.+.|+|+.+++.+-..+
T Consensus 370 reR~eDi--~-----~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~------------~WPGNvrEL~~v~~~a~~~~-- 428 (534)
T TIGR01817 370 RERREDI--P-----LLAEAFLEKFNRENGRPLTITPSAIRVLMSC------------KWPGNVRELENCLERTATLS-- 428 (534)
T ss_pred ccccccH--H-----HHHHHHHHHHHHHcCCCCCCCHHHHHHHHhC------------CCCChHHHHHHHHHHHHHhC--
Confidence 3222111 1 123333333221 12368999999988754 57888999999988664433
Q ss_pred cCCCCCCHHhHH
Q psy17703 574 RYSETVEVQDVD 585 (720)
Q Consensus 574 ~~~~~V~~~Dv~ 585 (720)
....++.+|+.
T Consensus 429 -~~~~I~~~~l~ 439 (534)
T TIGR01817 429 -RSGTITRSDFS 439 (534)
T ss_pred -CCCcccHHHCc
Confidence 34578888875
No 68
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.26 E-value=4e-12 Score=124.00 Aligned_cols=136 Identities=19% Similarity=0.259 Sum_probs=90.1
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCC--ccc--cCCcccccccc---ceeecCccccceeeecceeeecCCceeecc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRS--QYT--SGKGSSAVGLT---AYITKDPETRQMVLQTGALVLADSGVCCID 416 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~--~~~--~g~~ss~~glt---a~~~~~~~~~~~~~~~G~l~lad~gI~~ID 416 (720)
.+.||||+|++||||+.+|+++++..+|. .+. .....+.-.+. .+..+...++....++|.+..|++|++|||
T Consensus 21 ~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld 100 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLD 100 (168)
T ss_dssp STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEE
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccceEEeec
Confidence 56899999999999999999999988753 111 11111000000 011122223333456799999999999999
Q ss_pred ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703 417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD 487 (720)
Q Consensus 417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd 487 (720)
|++.|+++.|..|+++|+++++.. .|.....+.++.+|+++|... ....++-.|.+.|+.|+.
T Consensus 101 ~I~~L~~~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~RiI~st~~~l------~~~v~~g~fr~dLy~rL~ 163 (168)
T PF00158_consen 101 EIEDLPPELQAKLLRVLEEGKFTR--LGSDKPVPVDVRIIASTSKDL------EELVEQGRFREDLYYRLN 163 (168)
T ss_dssp TGGGS-HHHHHHHHHHHHHSEEEC--CTSSSEEE--EEEEEEESS-H------HHHHHTTSS-HHHHHHHT
T ss_pred chhhhHHHHHHHHHHHHhhchhcc--ccccccccccceEEeecCcCH------HHHHHcCCChHHHHHHhc
Confidence 999999999999999999998764 555567788999999998432 223334467777777765
No 69
>PLN03025 replication factor C subunit; Provisional
Probab=99.26 E-value=3.2e-11 Score=130.12 Aligned_cols=181 Identities=19% Similarity=0.199 Sum_probs=103.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCcc----ccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQY----TSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~----~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
.|+||+||||||||++++++++.+....+ .....+...+.. .+++. ...+......+......+++|||+|.|
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~--~vr~~-i~~~~~~~~~~~~~~~kviiiDE~d~l 111 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGID--VVRNK-IKMFAQKKVTLPPGRHKIVILDEADSM 111 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHH--HHHHH-HHHHHhccccCCCCCeEEEEEechhhc
Confidence 48999999999999999999987632111 111111111100 00000 000000000000123569999999999
Q ss_pred ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHH
Q psy17703 422 SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFD 501 (720)
Q Consensus 422 ~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d 501 (720)
+...|++|+..||.. +..+.++.++|... .+.++|.||+. ++.+..+++++..
T Consensus 112 t~~aq~aL~~~lE~~-------------~~~t~~il~~n~~~-------------~i~~~L~SRc~-~i~f~~l~~~~l~ 164 (319)
T PLN03025 112 TSGAQQALRRTMEIY-------------SNTTRFALACNTSS-------------KIIEPIQSRCA-IVRFSRLSDQEIL 164 (319)
T ss_pred CHHHHHHHHHHHhcc-------------cCCceEEEEeCCcc-------------ccchhHHHhhh-cccCCCCCHHHHH
Confidence 999999999999842 12244566677432 46789999994 7788877766543
Q ss_pred HHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCH
Q psy17703 502 ARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEV 581 (720)
Q Consensus 502 ~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~ 581 (720)
..+. ..-+.-.-.+++++.+.++...- ...|.+...+. +.+ . +...++.
T Consensus 165 ~~L~-------------~i~~~egi~i~~~~l~~i~~~~~-------------gDlR~aln~Lq---~~~-~-~~~~i~~ 213 (319)
T PLN03025 165 GRLM-------------KVVEAEKVPYVPEGLEAIIFTAD-------------GDMRQALNNLQ---ATH-S-GFGFVNQ 213 (319)
T ss_pred HHHH-------------HHHHHcCCCCCHHHHHHHHHHcC-------------CCHHHHHHHHH---HHH-h-cCCCCCH
Confidence 3322 22222355678888887764321 12355555554 222 1 2457888
Q ss_pred HhHHHH
Q psy17703 582 QDVDEA 587 (720)
Q Consensus 582 ~Dv~~A 587 (720)
+++...
T Consensus 214 ~~v~~~ 219 (319)
T PLN03025 214 ENVFKV 219 (319)
T ss_pred HHHHHH
Confidence 887654
No 70
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.26 E-value=5.3e-11 Score=140.27 Aligned_cols=211 Identities=14% Similarity=0.190 Sum_probs=136.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCC--cc--ccCCcccc----ccccceeecCccccceeeecceeeecCCceeec
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRS--QY--TSGKGSSA----VGLTAYITKDPETRQMVLQTGALVLADSGVCCI 415 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~--~~--~~g~~ss~----~glta~~~~~~~~~~~~~~~G~l~lad~gI~~I 415 (720)
.+.+|||.|+|||||+.+|++++..+++. .+ ........ ..+.+... .....-.+|.+..|++|++||
T Consensus 347 ~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~----~~~~~~~~g~~~~a~~GtL~l 422 (638)
T PRK11388 347 SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDR----TDSENGRLSKFELAHGGTLFL 422 (638)
T ss_pred cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCC----cCccCCCCCceeECCCCEEEE
Confidence 57899999999999999999999987642 11 11111100 00101000 011123467888999999999
Q ss_pred cccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee-EEEecC
Q psy17703 416 DEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL-IFLLLD 494 (720)
Q Consensus 416 DEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl-i~~l~d 494 (720)
||++.|+.+.|..|+++++++.++- .|.....+.++.+|+|+|.... .....-.+.+.|+.|+.. .+.+++
T Consensus 423 dei~~l~~~~Q~~Ll~~l~~~~~~~--~~~~~~~~~~~riI~~t~~~l~------~~~~~~~f~~dL~~~l~~~~i~lPp 494 (638)
T PRK11388 423 EKVEYLSPELQSALLQVLKTGVITR--LDSRRLIPVDVRVIATTTADLA------MLVEQNRFSRQLYYALHAFEITIPP 494 (638)
T ss_pred cChhhCCHHHHHHHHHHHhcCcEEe--CCCCceEEeeEEEEEeccCCHH------HHHhcCCChHHHhhhhceeEEeCCC
Confidence 9999999999999999999887753 5666667788999999996431 112223577788888873 333443
Q ss_pred CChHHHHHHHHhhcchhHHHHHHHHHH-h-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703 495 PQSEQFDARLARHLDITVLRDYIAYAQ-E-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK 572 (720)
Q Consensus 495 ~~~~~~d~~la~~i~~~~l~~~i~~ar-~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~ 572 (720)
..+ +..-|. .++..|+.... + ...+.+++++.+.|..| +||.+.|+|+.+++-+-..+
T Consensus 495 Lre--R~~Di~-----~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y------------~WPGNvreL~~~l~~~~~~~- 554 (638)
T PRK11388 495 LRM--RREDIP-----ALVNNKLRSLEKRFSTRLKIDDDALARLVSY------------RWPGNDFELRSVIENLALSS- 554 (638)
T ss_pred hhh--hhhHHH-----HHHHHHHHHHHHHhCCCCCcCHHHHHHHHcC------------CCCChHHHHHHHHHHHHHhC-
Confidence 332 221111 12333333222 1 12357899999988754 58888999999998654432
Q ss_pred HcCCCCCCHHhHHHHH
Q psy17703 573 MRYSETVEVQDVDEAW 588 (720)
Q Consensus 573 l~~~~~V~~~Dv~~Ai 588 (720)
....++.+|+...+
T Consensus 555 --~~~~i~~~~lp~~~ 568 (638)
T PRK11388 555 --DNGRIRLSDLPEHL 568 (638)
T ss_pred --CCCeecHHHCchhh
Confidence 23468888876654
No 71
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.22 E-value=5e-10 Score=133.58 Aligned_cols=138 Identities=15% Similarity=0.213 Sum_probs=78.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCcccccccc--ceeecCccccceeeecceee----ecCCceeecc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLT--AYITKDPETRQMVLQTGALV----LADSGVCCID 416 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glt--a~~~~~~~~~~~~~~~G~l~----lad~gI~~ID 416 (720)
..-|++|+||||||||.+++.+++.+..... ..-.+.....+. ..+......|+|..+-..+. ...+.|+|||
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiD 281 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFID 281 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEe
Confidence 5569999999999999999999986521100 000000001100 00000111122211100000 1135699999
Q ss_pred ccccCC---------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703 417 EFDKMS---------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD 487 (720)
Q Consensus 417 Eidkm~---------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd 487 (720)
|++.+. .+..+.|...|+.+ .+.+|+|+|+.. |+ ..+..+++|.+||.
T Consensus 282 Eih~l~~~g~~~~~~~~~~~~L~~~l~~g---------------~i~~IgaTt~~e--~~------~~~~~d~al~rRf~ 338 (731)
T TIGR02639 282 EIHTIVGAGATSGGSMDASNLLKPALSSG---------------KLRCIGSTTYEE--YK------NHFEKDRALSRRFQ 338 (731)
T ss_pred cHHHHhccCCCCCccHHHHHHHHHHHhCC---------------CeEEEEecCHHH--HH------HHhhhhHHHHHhCc
Confidence 999874 23456677776644 356799999743 11 22357899999998
Q ss_pred eEEEecCCChHHHHHHHH
Q psy17703 488 LIFLLLDPQSEQFDARLA 505 (720)
Q Consensus 488 li~~l~d~~~~~~d~~la 505 (720)
.+.+..|+.++....+.
T Consensus 339 -~i~v~~p~~~~~~~il~ 355 (731)
T TIGR02639 339 -KIDVGEPSIEETVKILK 355 (731)
T ss_pred -eEEeCCCCHHHHHHHHH
Confidence 67788777766655544
No 72
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.21 E-value=8.4e-11 Score=138.85 Aligned_cols=180 Identities=16% Similarity=0.185 Sum_probs=112.0
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccc-------cccccceeecCccccceeeeccee----eecCCceee
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSS-------AVGLTAYITKDPETRQMVLQTGAL----VLADSGVCC 414 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss-------~~glta~~~~~~~~~~~~~~~G~l----~lad~gI~~ 414 (720)
++||+||||+|||.+++.+++.+..... ..+.... .+|...+.+ | ..+.|.+ .....+|++
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyv-----g--~~~~g~L~~~v~~~p~sVll 562 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYV-----G--FDQGGLLTDAVIKHPHAVLL 562 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcc-----c--ccccchHHHHHHhCCCcEEE
Confidence 7999999999999999999998743221 1111110 111111111 0 0111222 122468999
Q ss_pred ccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCC-------CCCCCc---cccc--ccCCChhh
Q psy17703 415 IDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDS-------QWNTSK---TIID--NIRLPHTL 482 (720)
Q Consensus 415 IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g-------~~~~~~---~~~~--~~~l~~aL 482 (720)
+|||++++++.++.|+++|+++.++.. .|.... -.++.+|+|+|.-.. ++.... ...+ ...|+|+|
T Consensus 563 lDEieka~~~v~~~LLq~ld~G~ltd~-~g~~vd-~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pef 640 (758)
T PRK11034 563 LDEIEKAHPDVFNLLLQVMDNGTLTDN-NGRKAD-FRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEF 640 (758)
T ss_pred eccHhhhhHHHHHHHHHHHhcCeeecC-CCceec-CCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHH
Confidence 999999999999999999999998753 333222 246779999993210 011000 0000 12589999
Q ss_pred hccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703 483 LSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT 539 (720)
Q Consensus 483 lsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~ 539 (720)
+.|+|.++.+.+...++..+.+...+ ..+.+.+ .+..+.-.+++++.+.|.+.
T Consensus 641 l~Rid~ii~f~~L~~~~l~~I~~~~l--~~~~~~l--~~~~i~l~~~~~~~~~l~~~ 693 (758)
T PRK11034 641 RNRLDNIIWFDHLSTDVIHQVVDKFI--VELQAQL--DQKGVSLEVSQEARDWLAEK 693 (758)
T ss_pred HccCCEEEEcCCCCHHHHHHHHHHHH--HHHHHHH--HHCCCCceECHHHHHHHHHh
Confidence 99999999999888877765554332 1122222 33457788999999988753
No 73
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.19 E-value=1.2e-10 Score=128.85 Aligned_cols=194 Identities=22% Similarity=0.254 Sum_probs=115.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeee---cCCceeeccccccC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVL---ADSGVCCIDEFDKM 421 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~l---ad~gI~~IDEidkm 421 (720)
..+|||+||||||||++++++++.+....+.- ..+. +....... .....+ ..+.. ...+|+||||+|.+
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v-~~~~---l~~~~~g~---~~~~i~-~~f~~a~~~~p~IlfiDEiD~l 236 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRV-VGSE---LVQKFIGE---GARLVR-ELFELAREKAPSIIFIDEIDAI 236 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhCCCEEEe-ehHH---HhHhhccc---hHHHHH-HHHHHHHhcCCeEEEEechhhh
Confidence 34799999999999999999998775432211 0000 00000000 000000 00111 13579999999987
Q ss_pred C-----------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--ccee
Q psy17703 422 S-----------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDL 488 (720)
Q Consensus 422 ~-----------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdl 488 (720)
. .+.+..+.+.+.+.. |. .-..++.||||+|... .+++++++ |||.
T Consensus 237 ~~~r~~~~~~~~~~~~~~l~~lL~~ld------~~--~~~~~v~VI~aTn~~~-------------~ld~allRpgRfd~ 295 (389)
T PRK03992 237 AAKRTDSGTSGDREVQRTLMQLLAEMD------GF--DPRGNVKIIAATNRID-------------ILDPAILRPGRFDR 295 (389)
T ss_pred hcccccCCCCccHHHHHHHHHHHHhcc------cc--CCCCCEEEEEecCChh-------------hCCHHHcCCccCce
Confidence 3 334455666554311 10 0123578999999654 48899986 9999
Q ss_pred EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla 567 (720)
.+.+..|..+++...+..|. +. .+.+.+. ...+.. . . -..+.+.+.++++.|
T Consensus 296 ~I~v~~P~~~~R~~Il~~~~------------~~~~~~~~~~---~~~la~----~------t--~g~sgadl~~l~~eA 348 (389)
T PRK03992 296 IIEVPLPDEEGRLEILKIHT------------RKMNLADDVD---LEELAE----L------T--EGASGADLKAICTEA 348 (389)
T ss_pred EEEECCCCHHHHHHHHHHHh------------ccCCCCCcCC---HHHHHH----H------c--CCCCHHHHHHHHHHH
Confidence 99998887776655444321 11 1111111 111111 0 0 124569999999999
Q ss_pred HHHHHHcCCCCCCHHhHHHHHHHHHHH
Q psy17703 568 EAHAKMRYSETVEVQDVDEAWRLHREA 594 (720)
Q Consensus 568 ~A~A~l~~~~~V~~~Dv~~Ai~l~~~~ 594 (720)
.-.|.-+.+..|+.+|+.+|+.-++..
T Consensus 349 ~~~a~~~~~~~i~~~d~~~A~~~~~~~ 375 (389)
T PRK03992 349 GMFAIRDDRTEVTMEDFLKAIEKVMGK 375 (389)
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHhcc
Confidence 888887888899999999998866543
No 74
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.19 E-value=2.2e-10 Score=129.32 Aligned_cols=212 Identities=17% Similarity=0.221 Sum_probs=135.1
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCc--c--ccCCcccccccc---ceeecCccccceeeecceeeecCCceeecc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ--Y--TSGKGSSAVGLT---AYITKDPETRQMVLQTGALVLADSGVCCID 416 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~--~--~~g~~ss~~glt---a~~~~~~~~~~~~~~~G~l~lad~gI~~ID 416 (720)
.+.++++.|++||||+.++++++...++.. + .........-+. .+..+...++.....+|.+..+++|++|||
T Consensus 161 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 240 (445)
T TIGR02915 161 SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLD 240 (445)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEe
Confidence 578999999999999999999999876421 1 111110000000 000111122333445788899999999999
Q ss_pred ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce-eEEEecCC
Q psy17703 417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD-LIFLLLDP 495 (720)
Q Consensus 417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd-li~~l~d~ 495 (720)
|++.|+...|..|+++++++.+.. .|.....+.++.+|+|+|.... .....-.+.+.|+.|+. +.+.+++.
T Consensus 241 ~i~~l~~~~q~~l~~~l~~~~~~~--~~~~~~~~~~~rii~~~~~~l~------~~~~~~~~~~~L~~~l~~~~i~lPpL 312 (445)
T TIGR02915 241 EIGDLPLNLQAKLLRFLQERVIER--LGGREEIPVDVRIVCATNQDLK------RMIAEGTFREDLFYRIAEISITIPPL 312 (445)
T ss_pred chhhCCHHHHHHHHHHHhhCeEEe--CCCCceeeeceEEEEecCCCHH------HHHHcCCccHHHHHHhccceecCCCc
Confidence 999999999999999999987643 5555677889999999986531 11222357788888987 33344433
Q ss_pred ChHHHHHHHHhhcchhHHHHHHHHH-Hhh--cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703 496 QSEQFDARLARHLDITVLRDYIAYA-QEH--LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK 572 (720)
Q Consensus 496 ~~~~~d~~la~~i~~~~l~~~i~~a-r~~--~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~ 572 (720)
.+. .+.|. .+.+.|+... ++. -.+.+++++.+.|..| +||.+.|+|+.+++-+-..+.
T Consensus 313 r~R--~~Di~-----~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~------------~wpgNvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 313 RSR--DGDAV-----LLANAFLERFARELKRKTKGFTDDALRALEAH------------AWPGNVRELENKVKRAVIMAE 373 (445)
T ss_pred hhc--hhhHH-----HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhC------------CCCChHHHHHHHHHHHHHhCC
Confidence 222 22111 1223333332 221 1357999999988755 578888999999986544332
Q ss_pred HcCCCCCCHHhHH
Q psy17703 573 MRYSETVEVQDVD 585 (720)
Q Consensus 573 l~~~~~V~~~Dv~ 585 (720)
...++.+|+.
T Consensus 374 ---~~~i~~~~l~ 383 (445)
T TIGR02915 374 ---GNQITAEDLG 383 (445)
T ss_pred ---CCcccHHHcC
Confidence 3466766653
No 75
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.18 E-value=1.5e-10 Score=132.78 Aligned_cols=211 Identities=18% Similarity=0.207 Sum_probs=132.4
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCC--cc--ccCCcccccccc---ceeecCccccceeeecceeeecCCceeecc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRS--QY--TSGKGSSAVGLT---AYITKDPETRQMVLQTGALVLADSGVCCID 416 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~--~~--~~g~~ss~~glt---a~~~~~~~~~~~~~~~G~l~lad~gI~~ID 416 (720)
.+.+|||+|++||||+.+|++++...++. .+ ..........+. .+......++...-.+|.+..|++|.+|||
T Consensus 226 ~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~Ld 305 (520)
T PRK10820 226 LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLD 305 (520)
T ss_pred CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEe
Confidence 57899999999999999999999877643 11 111111000000 000000111111234577778999999999
Q ss_pred ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce-eEEEecCC
Q psy17703 417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD-LIFLLLDP 495 (720)
Q Consensus 417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd-li~~l~d~ 495 (720)
|++.|++..|..|+.+++++++. +.|.....+.++.+|+|++... ..+.+.-.+.+.|+.|+. +.+.+++.
T Consensus 306 eI~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~vRiI~st~~~l------~~l~~~g~f~~dL~~rL~~~~i~lPpL 377 (520)
T PRK10820 306 EIGEMSPRMQAKLLRFLNDGTFR--RVGEDHEVHVDVRVICATQKNL------VELVQKGEFREDLYYRLNVLTLNLPPL 377 (520)
T ss_pred ChhhCCHHHHHHHHHHHhcCCcc--cCCCCcceeeeeEEEEecCCCH------HHHHHcCCccHHHHhhcCeeEEeCCCc
Confidence 99999999999999999987653 3555566677889999987442 112233357788999986 44455544
Q ss_pred ChHHHHHHHHhhcchhHHHHHHHH-HHhh--cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703 496 QSEQFDARLARHLDITVLRDYIAY-AQEH--LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK 572 (720)
Q Consensus 496 ~~~~~d~~la~~i~~~~l~~~i~~-ar~~--~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~ 572 (720)
.+...| +. .+...|+.. +++. ..|.+++++.+.|..| +||.+.|+|+.++.-+-..+
T Consensus 378 reR~~D--i~-----~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y------------~WPGNvreL~nvl~~a~~~~- 437 (520)
T PRK10820 378 RDRPQD--IM-----PLTELFVARFADEQGVPRPKLAADLNTVLTRY------------GWPGNVRQLKNAIYRALTQL- 437 (520)
T ss_pred ccChhH--HH-----HHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcC------------CCCCHHHHHHHHHHHHHHhC-
Confidence 433222 11 122333332 2221 2468999999888744 58888999999886553332
Q ss_pred HcCCCCCCHHhH
Q psy17703 573 MRYSETVEVQDV 584 (720)
Q Consensus 573 l~~~~~V~~~Dv 584 (720)
....++.+|+
T Consensus 438 --~~~~i~~~~~ 447 (520)
T PRK10820 438 --EGYELRPQDI 447 (520)
T ss_pred --CCCcccHHHc
Confidence 2346777775
No 76
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.17 E-value=2.7e-10 Score=129.54 Aligned_cols=215 Identities=20% Similarity=0.244 Sum_probs=139.7
Q ss_pred CCCccEEEEcCCCCHHHHHHHHHHhhCCCCc--c--ccCCcccccccc---ceeecCccccceeeecceeeecCCceeec
Q psy17703 343 PAEINILLCGDPGTSKSQLLSYVYDLVPRSQ--Y--TSGKGSSAVGLT---AYITKDPETRQMVLQTGALVLADSGVCCI 415 (720)
Q Consensus 343 pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~--~--~~g~~ss~~glt---a~~~~~~~~~~~~~~~G~l~lad~gI~~I 415 (720)
+.+.++|+.|++||||+.++++++...++.. + .........-+. .+..+...++......|.+..+++|.+||
T Consensus 159 ~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l 238 (469)
T PRK10923 159 RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 (469)
T ss_pred ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEE
Confidence 3688999999999999999999999876531 1 111100000000 00001112233334678888999999999
Q ss_pred cccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce-eEEEecC
Q psy17703 416 DEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD-LIFLLLD 494 (720)
Q Consensus 416 DEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd-li~~l~d 494 (720)
||++.|+.+.|..|+.+++++.+.- .|.....+.++.+|+|+|... ....+.-.+.+.|+.||. +.+.+++
T Consensus 239 ~~i~~l~~~~q~~L~~~l~~~~~~~--~~~~~~~~~~~rii~~~~~~l------~~~~~~~~~~~~L~~~l~~~~i~~Pp 310 (469)
T PRK10923 239 DEIGDMPLDVQTRLLRVLADGQFYR--VGGYAPVKVDVRIIAATHQNL------EQRVQEGKFREDLFHRLNVIRVHLPP 310 (469)
T ss_pred eccccCCHHHHHHHHHHHhcCcEEe--CCCCCeEEeeEEEEEeCCCCH------HHHHHcCCchHHHHHHhcceeecCCC
Confidence 9999999999999999999887654 454455667899999998542 112233458889999996 4455554
Q ss_pred CChHHHHHHHHhhcchhHHHHHHHHHHhhc---CCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHH
Q psy17703 495 PQSEQFDARLARHLDITVLRDYIAYAQEHL---SPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHA 571 (720)
Q Consensus 495 ~~~~~~d~~la~~i~~~~l~~~i~~ar~~~---~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A 571 (720)
..+...| +. .+++.|+....... .+.+++++.+.|..| +||.+.|+|+.+++-+-..+
T Consensus 311 LreR~~D--i~-----~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~------------~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 311 LRERRED--IP-----RLARHFLQVAARELGVEAKLLHPETEAALTRL------------AWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred cccchhh--HH-----HHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC------------CCCChHHHHHHHHHHHHHhC
Confidence 4333222 11 23344444332221 246899999888754 68889999999997665443
Q ss_pred HHcCCCCCCHHhHHHH
Q psy17703 572 KMRYSETVEVQDVDEA 587 (720)
Q Consensus 572 ~l~~~~~V~~~Dv~~A 587 (720)
-...++.+|+...
T Consensus 372 ---~~~~i~~~~l~~~ 384 (469)
T PRK10923 372 ---AGQEVLIQDLPGE 384 (469)
T ss_pred ---CCCcccHHHCcHh
Confidence 2457888887544
No 77
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.16 E-value=2.4e-09 Score=126.64 Aligned_cols=174 Identities=11% Similarity=0.143 Sum_probs=92.0
Q ss_pred CCCccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccc--cceeecCccccceeeecc----eeeecCCceeec
Q psy17703 343 PAEINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGL--TAYITKDPETRQMVLQTG----ALVLADSGVCCI 415 (720)
Q Consensus 343 pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~gl--ta~~~~~~~~~~~~~~~G----~l~lad~gI~~I 415 (720)
...-|+||+||||||||.+++.++..+..... ..-.+.....+ ..-+......|+|..+-. .+....++|+||
T Consensus 205 ~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfI 284 (758)
T PRK11034 205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFI 284 (758)
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEe
Confidence 35679999999999999999999975411100 00000000000 000000111122211100 111234689999
Q ss_pred cccccCC---------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703 416 DEFDKMS---------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF 486 (720)
Q Consensus 416 DEidkm~---------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF 486 (720)
||++.+- .+..+.|..+++. .+..+|||+|+..-+ ..+..+++|.+||
T Consensus 285 DEIh~L~g~g~~~~g~~d~~nlLkp~L~~---------------g~i~vIgATt~~E~~--------~~~~~D~AL~rRF 341 (758)
T PRK11034 285 DEIHTIIGAGAASGGQVDAANLIKPLLSS---------------GKIRVIGSTTYQEFS--------NIFEKDRALARRF 341 (758)
T ss_pred ccHHHHhccCCCCCcHHHHHHHHHHHHhC---------------CCeEEEecCChHHHH--------HHhhccHHHHhhC
Confidence 9999761 1223345555543 346789999975311 1235789999999
Q ss_pred eeEEEecCCChHHHHHHHHhhc-----------chhHHHHHHHHHHhhcCC-cchHHHHHHHHHHH
Q psy17703 487 DLIFLLLDPQSEQFDARLARHL-----------DITVLRDYIAYAQEHLSP-TLSEEASQRLIQTY 540 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la~~i-----------~~~~l~~~i~~ar~~~~p-~ls~ea~~~l~~~y 540 (720)
+ .+.+..|+.++...+|.... +.+.++.-+..+..++.. .+++.|.+.+.+..
T Consensus 342 q-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~ 406 (758)
T PRK11034 342 Q-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAG 406 (758)
T ss_pred c-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHH
Confidence 8 67788787776665554321 333444444444444443 34455555554443
No 78
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.15 E-value=3.6e-10 Score=134.21 Aligned_cols=199 Identities=18% Similarity=0.218 Sum_probs=127.3
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCc----cccCCccccccccc----eeecCccccceeeecceeeecCCceeec
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ----YTSGKGSSAVGLTA----YITKDPETRQMVLQTGALVLADSGVCCI 415 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~----~~~g~~ss~~glta----~~~~~~~~~~~~~~~G~l~lad~gI~~I 415 (720)
.+.||||.|+||||||.+|++++..+++.- ......... ++.. +..+...++......|.+..+++|++||
T Consensus 398 ~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~-~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~L 476 (686)
T PRK15429 398 SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA-GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFL 476 (686)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh-hHhhhhhcCcccccccccccchhhHHHhcCCCeEEE
Confidence 678999999999999999999999876421 111111000 0000 0001111222233456777899999999
Q ss_pred cccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE-EEecC
Q psy17703 416 DEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI-FLLLD 494 (720)
Q Consensus 416 DEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli-~~l~d 494 (720)
||++.++.+.|..|+.+++++.+.. .|.....+.++.+|+++|.... .....-.+...|+.|+... +.+++
T Consensus 477 dei~~L~~~~Q~~L~~~l~~~~~~~--~g~~~~~~~~~RiI~~t~~~l~------~~~~~~~f~~~L~~~l~~~~i~lPp 548 (686)
T PRK15429 477 DEVGDMPLELQPKLLRVLQEQEFER--LGSNKIIQTDVRLIAATNRDLK------KMVADREFRSDLYYRLNVFPIHLPP 548 (686)
T ss_pred echhhCCHHHHHHHHHHHHhCCEEe--CCCCCcccceEEEEEeCCCCHH------HHHHcCcccHHHHhccCeeEEeCCC
Confidence 9999999999999999999886654 5555566788999999986431 1223335778888898743 33333
Q ss_pred CChHHHHHHHHhhcchhHHHHHHHH-HHhhc--CCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703 495 PQSEQFDARLARHLDITVLRDYIAY-AQEHL--SPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH 570 (720)
Q Consensus 495 ~~~~~~d~~la~~i~~~~l~~~i~~-ar~~~--~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~ 570 (720)
. .++.+-|. .+++.|+.. +++.- .+.+++++.+.|..| +||.+.|+|+.+++-+-..
T Consensus 549 L--reR~~Di~-----~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y------------~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 549 L--RERPEDIP-----LLVKAFTFKIARRMGRNIDSIPAETLRTLSNM------------EWPGNVRELENVIERAVLL 608 (686)
T ss_pred h--hhhHhHHH-----HHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC------------CCCCcHHHHHHHHHHHHHh
Confidence 3 22222221 233444433 33211 236899999888754 5888999999998766543
No 79
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.14 E-value=4.3e-10 Score=126.85 Aligned_cols=184 Identities=22% Similarity=0.187 Sum_probs=109.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCC---ccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGK---GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~---~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
-.|||+||||||||.+++++++.+....+.-.. .+..+|.+...++ +....+. .....|+||||+|++.
T Consensus 260 kGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~-----~~f~~A~---~~~P~IL~IDEID~~~ 331 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMR-----QMIRIAE---ALSPCILWIDEIDKAF 331 (489)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHH-----HHHHHHH---hcCCcEEEehhhhhhh
Confidence 469999999999999999999977543322100 0111111111110 0100011 1236899999999864
Q ss_pred hH------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--ccee
Q psy17703 423 DT------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDL 488 (720)
Q Consensus 423 ~~------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdl 488 (720)
.. ....++..|++. +.++.+|||+|... .||+++++ |||.
T Consensus 332 ~~~~~~~d~~~~~rvl~~lL~~l~~~-------------~~~V~vIaTTN~~~-------------~Ld~allR~GRFD~ 385 (489)
T CHL00195 332 SNSESKGDSGTTNRVLATFITWLSEK-------------KSPVFVVATANNID-------------LLPLEILRKGRFDE 385 (489)
T ss_pred ccccCCCCchHHHHHHHHHHHHHhcC-------------CCceEEEEecCChh-------------hCCHHHhCCCcCCe
Confidence 31 123455555421 24578999999654 59999997 9999
Q ss_pred EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPT-LSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~-ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla 567 (720)
+|.+..|+.+++...+..|+ .. ..|. ..+...+.+.. .. -..|.+.++.+++-|
T Consensus 386 ~i~v~lP~~~eR~~Il~~~l---------~~----~~~~~~~~~dl~~La~----------~T--~GfSGAdI~~lv~eA 440 (489)
T CHL00195 386 IFFLDLPSLEEREKIFKIHL---------QK----FRPKSWKKYDIKKLSK----------LS--NKFSGAEIEQSIIEA 440 (489)
T ss_pred EEEeCCcCHHHHHHHHHHHH---------hh----cCCCcccccCHHHHHh----------hc--CCCCHHHHHHHHHHH
Confidence 99998887776655544332 11 1221 11111222221 11 124569999999988
Q ss_pred HHHHHHcCCCCCCHHhHHHHHH
Q psy17703 568 EAHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 568 ~A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
...|..+.+ .++.+|+..|+.
T Consensus 441 ~~~A~~~~~-~lt~~dl~~a~~ 461 (489)
T CHL00195 441 MYIAFYEKR-EFTTDDILLALK 461 (489)
T ss_pred HHHHHHcCC-CcCHHHHHHHHH
Confidence 877766654 589999999976
No 80
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.14 E-value=1.8e-10 Score=138.12 Aligned_cols=171 Identities=22% Similarity=0.261 Sum_probs=99.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCcc-ccccccceeecCccccceeeeccee----e--ecCCceeecc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGS-SAVGLTAYITKDPETRQMVLQTGAL----V--LADSGVCCID 416 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~s-s~~glta~~~~~~~~~~~~~~~G~l----~--lad~gI~~ID 416 (720)
.-++||+||||||||++++++++.+.+..+. +..+. ....+... +....+. .+|.+ . ...+.+++||
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~--~~~~~g~---~~g~i~~~l~~~~~~~~villD 421 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH--RRTYVGA---MPGRIIQGLKKAKTKNPLFLLD 421 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC--CCceeCC---CCchHHHHHHHhCcCCCEEEEe
Confidence 3489999999999999999999987543321 11110 00000000 0000000 01111 1 1235699999
Q ss_pred ccccCChHH----HHHHHHHHHhc---eEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 417 EFDKMSDTT----RSILHEVMEQQ---TLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 417 Eidkm~~~~----~~~L~e~mE~~---~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
|||++.++. .++|+++|+.. .+.-...+....+ .++.+|+|+|+.. .+|++|++||+ +
T Consensus 422 Eidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~-s~v~~I~TtN~~~-------------~i~~~L~~R~~-v 486 (775)
T TIGR00763 422 EIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDL-SKVIFIATANSID-------------TIPRPLLDRME-V 486 (775)
T ss_pred chhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceecc-CCEEEEEecCCch-------------hCCHHHhCCee-E
Confidence 999997643 37899999742 2211111222221 4678899999754 58999999997 5
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhc---CCcchHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHL---SPTLSEEASQRLIQTYV 541 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~---~p~ls~ea~~~l~~~y~ 541 (720)
+.+..++.++....+..++.. +.+.. ..+ .-.+++++...|++.|.
T Consensus 487 i~~~~~~~~e~~~I~~~~l~~----~~~~~--~~l~~~~~~~~~~~l~~i~~~~~ 535 (775)
T TIGR00763 487 IELSGYTEEEKLEIAKKYLIP----KALED--HGLKPDELKITDEALLLLIKYYT 535 (775)
T ss_pred EecCCCCHHHHHHHHHHHHHH----HHHHH--cCCCcceEEECHHHHHHHHHhcC
Confidence 678777766655454443321 11111 012 23689999999998765
No 81
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.13 E-value=4.4e-10 Score=130.92 Aligned_cols=207 Identities=18% Similarity=0.202 Sum_probs=119.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCC-----------ccccCCccc--c--c--cccceeecCc----------ccc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRS-----------QYTSGKGSS--A--V--GLTAYITKDP----------ETR 396 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~-----------~~~~g~~ss--~--~--glta~~~~~~----------~~~ 396 (720)
...|++|+||||||||++++.+++...+. +...+.... . . .+.... .++ .++
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~-~~~~~~~a~~~l~~~g 252 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSV-HDPIYQGARRDLAETG 252 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCc-cHHHHHHHHHHHHHcC
Confidence 45689999999999999999998766321 111111100 0 0 000000 000 011
Q ss_pred ceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCe---------------EEeecCceEEEecccC
Q psy17703 397 QMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGI---------------ICQLNARTSILAAANP 461 (720)
Q Consensus 397 ~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~---------------~~~l~a~~~iiaaaNp 461 (720)
......|.+..+++|++||||++.|++..|..|+.+|+++.+.+..... ....+.++.++++++.
T Consensus 253 l~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~ 332 (615)
T TIGR02903 253 VPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTR 332 (615)
T ss_pred CCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccc
Confidence 1223456677788999999999999999999999999998876532210 1123456777776653
Q ss_pred CCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Q psy17703 462 CDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYV 541 (720)
Q Consensus 462 ~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~ 541 (720)
... .++++|.+||.. +.+.+...++....+ +.++ ......+++++.+.|.++-.
T Consensus 333 ~~~------------~l~~aLrSR~~~-i~~~pls~edi~~Il---------~~~a----~~~~v~ls~eal~~L~~ys~ 386 (615)
T TIGR02903 333 DPE------------EINPALRSRCAE-VFFEPLTPEDIALIV---------LNAA----EKINVHLAAGVEELIARYTI 386 (615)
T ss_pred ccc------------ccCHHHHhceeE-EEeCCCCHHHHHHHH---------HHHH----HHcCCCCCHHHHHHHHHCCC
Confidence 321 378999999984 455555444332222 2211 12344688888888876432
Q ss_pred HhhhcCCCCCCcccCHHHHHHHHHHHHHHHHH--------cCCCCCCHHhHHHHHHHH
Q psy17703 542 DMRKLGAGRGRISAYPRQLESLIRLSEAHAKM--------RYSETVEVQDVDEAWRLH 591 (720)
Q Consensus 542 ~lr~~~~~~~~~~~t~R~le~lirla~A~A~l--------~~~~~V~~~Dv~~Ai~l~ 591 (720)
+.| |.+ .++.-+-..+.. .....|+.+|+++++..-
T Consensus 387 ~gR-------------ral-n~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 387 EGR-------------KAV-NILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred cHH-------------HHH-HHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 221 222 222211122111 122368999999998753
No 82
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.12 E-value=7.7e-10 Score=125.35 Aligned_cols=215 Identities=15% Similarity=0.181 Sum_probs=136.3
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCc--c--ccCCcccccccc---ceeecCccccceeeecceeeecCCceeecc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ--Y--TSGKGSSAVGLT---AYITKDPETRQMVLQTGALVLADSGVCCID 416 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~--~--~~g~~ss~~glt---a~~~~~~~~~~~~~~~G~l~lad~gI~~ID 416 (720)
.+.++|+.|++||||+.++++++..+++.. + ..........+. .+......++.....+|.+..+++|++|||
T Consensus 165 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld 244 (457)
T PRK11361 165 SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLD 244 (457)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEe
Confidence 568999999999999999999998765421 1 111110000000 000011123334456788999999999999
Q ss_pred ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCC
Q psy17703 417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQ 496 (720)
Q Consensus 417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~ 496 (720)
|++.|+.+.|..|+.+++.+.+. +.|.....+.++.+|+|+|.... .+...-.+.+.|+.|+.. +.+.-|+
T Consensus 245 ~i~~l~~~~q~~L~~~l~~~~~~--~~~~~~~~~~~~rii~~t~~~l~------~~~~~g~~~~~l~~~l~~-~~i~~pp 315 (457)
T PRK11361 245 EIGEMPLVLQAKLLRILQEREFE--RIGGHQTIKVDIRIIAATNRDLQ------AMVKEGTFREDLFYRLNV-IHLILPP 315 (457)
T ss_pred chhhCCHHHHHHHHHHHhcCcEE--eCCCCceeeeceEEEEeCCCCHH------HHHHcCCchHHHHHHhcc-ceecCCC
Confidence 99999999999999999988765 35666677888999999996531 122233577788888863 3333233
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHHHhh---cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHH
Q psy17703 497 SEQFDARLARHLDITVLRDYIAYAQEH---LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKM 573 (720)
Q Consensus 497 ~~~~d~~la~~i~~~~l~~~i~~ar~~---~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l 573 (720)
-.++...+. .+...|+...... -.+.+++++.+.|..| +||.+.|+|+.+++-+-..+
T Consensus 316 LreR~~di~-----~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~------------~wpgNv~eL~~~~~~~~~~~-- 376 (457)
T PRK11361 316 LRDRREDIS-----LLANHFLQKFSSENQRDIIDIDPMAMSLLTAW------------SWPGNIRELSNVIERAVVMN-- 376 (457)
T ss_pred hhhchhhHH-----HHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcC------------CCCCcHHHHHHHHHHHHHhC--
Confidence 222211111 1233334333221 1357899999888744 68888999999987654432
Q ss_pred cCCCCCCHHhHHHH
Q psy17703 574 RYSETVEVQDVDEA 587 (720)
Q Consensus 574 ~~~~~V~~~Dv~~A 587 (720)
....++.+|+...
T Consensus 377 -~~~~i~~~~l~~~ 389 (457)
T PRK11361 377 -SGPIIFSEDLPPQ 389 (457)
T ss_pred -CCCcccHHHChHh
Confidence 2346788877654
No 83
>KOG2004|consensus
Probab=99.11 E-value=1.4e-10 Score=130.00 Aligned_cols=169 Identities=22% Similarity=0.308 Sum_probs=104.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccce-eec---Cccccceeeecceee------ecCCceee
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAY-ITK---DPETRQMVLQTGALV------LADSGVCC 414 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~-~~~---~~~~~~~~~~~G~l~------lad~gI~~ 414 (720)
+--++|+||||+|||+++++||+.+.|-.+. .+..|++-- -.+ ..+.| --||.++ ...+-+++
T Consensus 438 GkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR----fSvGG~tDvAeIkGHRRTYVG---AMPGkiIq~LK~v~t~NPliL 510 (906)
T KOG2004|consen 438 GKILCFVGPPGVGKTSIAKSIARALNRKFFR----FSVGGMTDVAEIKGHRRTYVG---AMPGKIIQCLKKVKTENPLIL 510 (906)
T ss_pred CcEEEEeCCCCCCcccHHHHHHHHhCCceEE----EeccccccHHhhcccceeeec---cCChHHHHHHHhhCCCCceEE
Confidence 3468999999999999999999999987654 222233210 000 00111 2355543 23567899
Q ss_pred ccccccCCh----HHHHHHHHHHH-hceEeeeccCeEEeec-CceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703 415 IDEFDKMSD----TTRSILHEVME-QQTLSIAKAGIICQLN-ARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL 488 (720)
Q Consensus 415 IDEidkm~~----~~~~~L~e~mE-~~~vsi~k~g~~~~l~-a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl 488 (720)
|||+||+.. +--++|+|+|+ +|.-++...-....+. +++.+|||||... .+|+||++|..+
T Consensus 511 iDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~id-------------tIP~pLlDRMEv 577 (906)
T KOG2004|consen 511 IDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVID-------------TIPPPLLDRMEV 577 (906)
T ss_pred eehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccc-------------cCChhhhhhhhe
Confidence 999999875 23569999995 3333332222222222 5789999999776 699999999985
Q ss_pred EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhc-----CCcchHHHHHHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHL-----SPTLSEEASQRLIQTYVD 542 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~-----~p~ls~ea~~~l~~~y~~ 542 (720)
| .+.-...++.-.+-.+|+ +-.++..+ +-.+++.|...|+.+|+.
T Consensus 578 I-elsGYv~eEKv~IA~~yL--------ip~a~~~~gl~~e~v~is~~al~~lI~~Ycr 627 (906)
T KOG2004|consen 578 I-ELSGYVAEEKVKIAERYL--------IPQALKDCGLKPEQVKISDDALLALIERYCR 627 (906)
T ss_pred e-eccCccHHHHHHHHHHhh--------hhHHHHHcCCCHHhcCccHHHHHHHHHHHHH
Confidence 4 444333333322222332 12232222 346899999999999974
No 84
>PRK15115 response regulator GlrR; Provisional
Probab=99.11 E-value=1.1e-09 Score=123.80 Aligned_cols=215 Identities=18% Similarity=0.246 Sum_probs=135.8
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCc--c--ccCCcccccccc---ceeecCccccceeeecceeeecCCceeecc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ--Y--TSGKGSSAVGLT---AYITKDPETRQMVLQTGALVLADSGVCCID 416 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~--~--~~g~~ss~~glt---a~~~~~~~~~~~~~~~G~l~lad~gI~~ID 416 (720)
.+.++++.|++||||+.++++++...++.. + ..........+. .+..+...++......|.+..+++|++|||
T Consensus 156 ~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 235 (444)
T PRK15115 156 SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 (444)
T ss_pred CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEE
Confidence 578999999999999999999999876531 1 110000000000 000111223334456788889999999999
Q ss_pred ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCC
Q psy17703 417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQ 496 (720)
Q Consensus 417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~ 496 (720)
|++.|+.+.|..|+.+++++.+. ..|.....+.++.+|+|+|... ......-.+.+.|+.|+... .+.-|+
T Consensus 236 ~i~~l~~~~q~~L~~~l~~~~~~--~~g~~~~~~~~~rii~~~~~~l------~~~~~~~~f~~~l~~~l~~~-~i~lPp 306 (444)
T PRK15115 236 EIGDMPAPLQVKLLRVLQERKVR--PLGSNRDIDIDVRIISATHRDL------PKAMARGEFREDLYYRLNVV-SLKIPA 306 (444)
T ss_pred ccccCCHHHHHHHHHHHhhCCEE--eCCCCceeeeeEEEEEeCCCCH------HHHHHcCCccHHHHHhhcee-eecCCC
Confidence 99999999999999999988764 3555566677899999998431 11222335778888888732 222222
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHH-Hhh--cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHH
Q psy17703 497 SEQFDARLARHLDITVLRDYIAYA-QEH--LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKM 573 (720)
Q Consensus 497 ~~~~d~~la~~i~~~~l~~~i~~a-r~~--~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l 573 (720)
-.++.+.|. .+++.|+... +.. ..+.+++++.+.|..| +||.+.|+|+.+++.+-..+
T Consensus 307 Lr~R~eDi~-----~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~------------~WpgNvreL~~~i~~~~~~~-- 367 (444)
T PRK15115 307 LAERTEDIP-----LLANHLLRQAAERHKPFVRAFSTDAMKRLMTA------------SWPGNVRQLVNVIEQCVALT-- 367 (444)
T ss_pred hHhccccHH-----HHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC------------CCCChHHHHHHHHHHHHHhC--
Confidence 222211111 1234444433 222 1235899999998754 68888999999998764432
Q ss_pred cCCCCCCHHhHHHH
Q psy17703 574 RYSETVEVQDVDEA 587 (720)
Q Consensus 574 ~~~~~V~~~Dv~~A 587 (720)
....++.+|+...
T Consensus 368 -~~~~i~~~~l~~~ 380 (444)
T PRK15115 368 -SSPVISDALVEQA 380 (444)
T ss_pred -CCCccChhhhhhh
Confidence 2446777776543
No 85
>KOG2028|consensus
Probab=99.11 E-value=1.8e-10 Score=120.28 Aligned_cols=193 Identities=18% Similarity=0.244 Sum_probs=105.7
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCcccc-ceeeecceeeecCCceeeccccccCChHH
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETR-QMVLQTGALVLADSGVCCIDEFDKMSDTT 425 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~-~~~~~~G~l~lad~gI~~IDEidkm~~~~ 425 (720)
.++|+||||||||+|++.++.......|..-. .++...+..-+++.... +.. .......-|+||||++++++..
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~Syrfve-lSAt~a~t~dvR~ife~aq~~----~~l~krkTilFiDEiHRFNksQ 238 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVE-LSATNAKTNDVRDIFEQAQNE----KSLTKRKTILFIDEIHRFNKSQ 238 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEE-EeccccchHHHHHHHHHHHHH----HhhhcceeEEEeHHhhhhhhhh
Confidence 58899999999999999999866433221000 00000000001110000 000 0001125699999999999999
Q ss_pred HHHHHHHHHhceEeeeccCeEEeecCceEEEecc--cCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHH
Q psy17703 426 RSILHEVMEQQTLSIAKAGIICQLNARTSILAAA--NPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDAR 503 (720)
Q Consensus 426 ~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaa--Np~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~ 503 (720)
|+.++...|.+.|++ |+|+ ||.+ +|..+|+||+- +|.+...+-+.....
T Consensus 239 QD~fLP~VE~G~I~l---------------IGATTENPSF-------------qln~aLlSRC~-VfvLekL~~n~v~~i 289 (554)
T KOG2028|consen 239 QDTFLPHVENGDITL---------------IGATTENPSF-------------QLNAALLSRCR-VFVLEKLPVNAVVTI 289 (554)
T ss_pred hhcccceeccCceEE---------------EecccCCCcc-------------chhHHHHhccc-eeEeccCCHHHHHHH
Confidence 999998888777654 5555 5544 78999999996 666665555554444
Q ss_pred HHhhcchhHHHHHHHHHHhhcCCcchH---HHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH--HHHHHHc--CC
Q psy17703 504 LARHLDITVLRDYIAYAQEHLSPTLSE---EASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS--EAHAKMR--YS 576 (720)
Q Consensus 504 la~~i~~~~l~~~i~~ar~~~~p~ls~---ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla--~A~A~l~--~~ 576 (720)
|.+.|.. +...++... .++. ...+.+++|...+..+. .|.....+.++ ...-|-. -+
T Consensus 290 L~raia~------l~dser~~~-~l~n~s~~ve~siidyla~lsdGD---------aR~aLN~Lems~~m~~tr~g~~~~ 353 (554)
T KOG2028|consen 290 LMRAIAS------LGDSERPTD-PLPNSSMFVEDSIIDYLAYLSDGD---------ARAALNALEMSLSMFCTRSGQSSR 353 (554)
T ss_pred HHHHHHh------hccccccCC-CCCCcchhhhHHHHHHHHHhcCch---------HHHHHHHHHHHHHHHHhhcCCccc
Confidence 4432210 001111111 1211 34455555555544322 24444444444 3333322 34
Q ss_pred CCCCHHhHHHHHH
Q psy17703 577 ETVEVQDVDEAWR 589 (720)
Q Consensus 577 ~~V~~~Dv~~Ai~ 589 (720)
..++.+|+.+++.
T Consensus 354 ~~lSidDvke~lq 366 (554)
T KOG2028|consen 354 VLLSIDDVKEGLQ 366 (554)
T ss_pred ceecHHHHHHHHh
Confidence 5788899999865
No 86
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.11 E-value=4.7e-11 Score=116.85 Aligned_cols=138 Identities=20% Similarity=0.227 Sum_probs=84.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC-----CCccccCCccccccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP-----RSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK 420 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p-----r~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk 420 (720)
.++||.||+|+|||.+++.+++.+- +.+...+...+..... ...........+|.+-.+++||+|+|||||
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~----~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDV----ESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHC----SCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchH----HhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 5899999999999999999999775 1111111111110000 000000111123444455678999999999
Q ss_pred CCh-----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCc--------c----c--ccc
Q psy17703 421 MSD-----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSK--------T----I--IDN 475 (720)
Q Consensus 421 m~~-----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~--------~----~--~~~ 475 (720)
+.+ ..|+.|+++||.++++..+ |.... -.++.+|+|+|-......... . . .-.
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~-g~~vd-~~n~ifI~Tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSY-GRTVD-TSNIIFIMTSNFGAEEIIDASRSGEAIEQEQEEQIRDLVE 157 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETT-CCEEE-GTTEEEEEEESSSTHHHHHCHHHCTCCHHHHCHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceeccc-ceEEE-eCCceEEEecccccchhhhhhccccccHHHHHHHHHHHHH
Confidence 999 9999999999999998633 43332 257999999995432111100 0 0 001
Q ss_pred cCCChhhhccceeE
Q psy17703 476 IRLPHTLLSRFDLI 489 (720)
Q Consensus 476 ~~l~~aLlsRFdli 489 (720)
..++|+|+.|||.|
T Consensus 158 ~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 158 YGFRPEFLGRIDVI 171 (171)
T ss_dssp HTS-HHHHTTSSEE
T ss_pred cCCCHHHHccCCcC
Confidence 14889999999854
No 87
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.10 E-value=4.2e-10 Score=124.28 Aligned_cols=191 Identities=19% Similarity=0.258 Sum_probs=111.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcccc----ccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSA----VGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK 420 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~----~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk 420 (720)
.-++||+||||||||++++++++.+....+.- .++.. .|.+....+ +....+ ......|+||||+|.
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i-~~s~l~~k~~ge~~~~lr-----~lf~~A---~~~~P~ILfIDEID~ 249 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV-VGSEFVQKYLGEGPRMVR-----DVFRLA---RENAPSIIFIDEVDS 249 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEE-ehHHHHHHhcchhHHHHH-----HHHHHH---HhcCCeEEEEECHhh
Confidence 35799999999999999999998765432211 00000 010000000 000000 011357999999998
Q ss_pred CCh-----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cce
Q psy17703 421 MSD-----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFD 487 (720)
Q Consensus 421 m~~-----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFd 487 (720)
+.. ..+..+.+.+.+- .|. .-..++.+|+|+|... .+++++++ |||
T Consensus 250 i~~~r~~~~~~~d~~~~r~l~~LL~~l------d~~--~~~~~v~VI~aTN~~d-------------~LDpAllR~GRfd 308 (398)
T PTZ00454 250 IATKRFDAQTGADREVQRILLELLNQM------DGF--DQTTNVKVIMATNRAD-------------TLDPALLRPGRLD 308 (398)
T ss_pred hccccccccCCccHHHHHHHHHHHHHh------hcc--CCCCCEEEEEecCCch-------------hCCHHHcCCCccc
Confidence 632 2333455554321 111 0123577899999654 58999997 999
Q ss_pred eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH
Q psy17703 488 LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567 (720)
Q Consensus 488 li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla 567 (720)
..+.+..|..+++...+..+. .+..+.+.+. .+.+. . + .-..|++.+.++++-|
T Consensus 309 ~~I~~~~P~~~~R~~Il~~~~-----------~~~~l~~dvd---~~~la----~-~-------t~g~sgaDI~~l~~eA 362 (398)
T PTZ00454 309 RKIEFPLPDRRQKRLIFQTIT-----------SKMNLSEEVD---LEDFV----S-R-------PEKISAADIAAICQEA 362 (398)
T ss_pred EEEEeCCcCHHHHHHHHHHHH-----------hcCCCCcccC---HHHHH----H-H-------cCCCCHHHHHHHHHHH
Confidence 999888777665443333211 1111122111 11111 1 0 1124679999999999
Q ss_pred HHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703 568 EAHAKMRYSETVEVQDVDEAWRLH 591 (720)
Q Consensus 568 ~A~A~l~~~~~V~~~Dv~~Ai~l~ 591 (720)
...|.-+.+..|+.+|+.+|++-.
T Consensus 363 ~~~A~r~~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 363 GMQAVRKNRYVILPKDFEKGYKTV 386 (398)
T ss_pred HHHHHHcCCCccCHHHHHHHHHHH
Confidence 988888888999999999997753
No 88
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=2.9e-09 Score=122.78 Aligned_cols=184 Identities=19% Similarity=0.165 Sum_probs=104.9
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCCCCccccCCc---------------cccccccceeecCc-cccceeeec--ceeeecC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKG---------------SSAVGLTAYITKDP-ETRQMVLQT--GALVLAD 409 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~---------------ss~~glta~~~~~~-~~~~~~~~~--G~l~lad 409 (720)
+||+|++|||||++++.+++.+.......+.. .....+.+...+.. ..++. ++. .......
T Consensus 41 yLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReL-Ie~a~~~P~~gr 119 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAAL-LERAVYAPVDAR 119 (830)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHH-HHHHHhccccCC
Confidence 58999999999999999999774321111100 01111111000000 00000 000 0001134
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
..|++|||++.|+...+++|+..||+- +.++.||.++|... +|+++++||| ..
T Consensus 120 ~KVIIIDEah~LT~~A~NALLKtLEEP-------------P~~v~FILaTtd~~-------------KIp~TIrSRC-q~ 172 (830)
T PRK07003 120 FKVYMIDEVHMLTNHAFNAMLKTLEEP-------------PPHVKFILATTDPQ-------------KIPVTVLSRC-LQ 172 (830)
T ss_pred ceEEEEeChhhCCHHHHHHHHHHHHhc-------------CCCeEEEEEECChh-------------hccchhhhhe-EE
Confidence 569999999999999999999999873 23345555665322 5889999999 58
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
|.|...+.++....|. .....-...+++++.+.|.+.. ..+.|...+++.-+.+
T Consensus 173 f~Fk~Ls~eeIv~~L~-------------~Il~~EgI~id~eAL~lIA~~A-------------~GsmRdALsLLdQAia 226 (830)
T PRK07003 173 FNLKQMPAGHIVSHLE-------------RILGEERIAFEPQALRLLARAA-------------QGSMRDALSLTDQAIA 226 (830)
T ss_pred EecCCcCHHHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHHH
Confidence 8888776665433332 2222224457788887776431 1234666666543333
Q ss_pred HHHHcCCCCCCHHhHHHHHH
Q psy17703 570 HAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 570 ~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
. ..+.|+.+++...+.
T Consensus 227 ~----~~~~It~~~V~~~LG 242 (830)
T PRK07003 227 Y----SANEVTETAVSGMLG 242 (830)
T ss_pred h----ccCCcCHHHHHHHhC
Confidence 2 234688877776543
No 89
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.09 E-value=3.6e-10 Score=134.80 Aligned_cols=184 Identities=17% Similarity=0.208 Sum_probs=112.0
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCcc-------ccccccceeecCccccceeeecceeeecCCceeecccc
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGS-------SAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEF 418 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~s-------s~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEi 418 (720)
++||+||||||||.+++++++.+..... .++... ...|-..+.+.....+.. ..++.....+|++|||+
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l---~~~~~~~p~~VvllDEi 562 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLL---TEAVRKHPHCVLLLDEI 562 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHH---HHHHHhCCCeEEEEech
Confidence 5899999999999999999998853211 111110 001111111000000000 01122235689999999
Q ss_pred ccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCC------Cccc----cc--ccCCChhhhccc
Q psy17703 419 DKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT------SKTI----ID--NIRLPHTLLSRF 486 (720)
Q Consensus 419 dkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~------~~~~----~~--~~~l~~aLlsRF 486 (720)
++++++.++.|+++|+++.++.. .|....+ .++.+|+|+|.-...+.. .... .. .-.++|+|++||
T Consensus 563 eka~~~~~~~Ll~~ld~g~~~d~-~g~~vd~-~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Ri 640 (731)
T TIGR02639 563 EKAHPDIYNILLQVMDYATLTDN-NGRKADF-RNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRL 640 (731)
T ss_pred hhcCHHHHHHHHHhhccCeeecC-CCcccCC-CCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcC
Confidence 99999999999999999998753 3433322 368899999964221110 0000 00 124899999999
Q ss_pred eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703 487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT 539 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~ 539 (720)
|-++.+.+...++..+.+...+. .+.+.+ ....+.-.+++++.+.|.+.
T Consensus 641 d~Vi~F~pLs~e~l~~Iv~~~L~--~l~~~l--~~~~~~l~i~~~a~~~La~~ 689 (731)
T TIGR02639 641 DAIIHFNPLSEEVLEKIVQKFVD--ELSKQL--NEKNIKLELTDDAKKYLAEK 689 (731)
T ss_pred CeEEEcCCCCHHHHHHHHHHHHH--HHHHHH--HhCCCeEEeCHHHHHHHHHh
Confidence 99999999888777666554321 122222 22335667899999988864
No 90
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3.3e-10 Score=116.78 Aligned_cols=198 Identities=16% Similarity=0.239 Sum_probs=121.4
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCC-CCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVP-RSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~p-r~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
+..||||+||+|+|||.||+.+|+.+. +....+.+.-+.+|..+--+.+-..+-...--..+..|..||++||||||++
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIa 175 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIA 175 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhh
Confidence 467999999999999999999999883 2223333333333332211110000001111245567889999999999986
Q ss_pred hH--------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccC---CCCCCCCCccc-------------
Q psy17703 423 DT--------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP---CDSQWNTSKTI------------- 472 (720)
Q Consensus 423 ~~--------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp---~~g~~~~~~~~------------- 472 (720)
.. .|.+|+..||--..++...|....-+..|.-+-|+|- ++|.|++-..+
T Consensus 176 rkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~ 255 (408)
T COG1219 176 RKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFG 255 (408)
T ss_pred ccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCccccc
Confidence 42 5889999999888888877766555566777777774 34433211100
Q ss_pred ---------------c--------cccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHH-hhcCCcc
Q psy17703 473 ---------------I--------DNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQ-EHLSPTL 528 (720)
Q Consensus 473 ---------------~--------~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar-~~~~p~l 528 (720)
. -.+.|-|.|.-|+.++..+.+.+.+..-+.|.+- ...+++.|-..-. ..+.-.+
T Consensus 256 a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILteP-kNAlvKQYq~Lf~~d~V~L~F 334 (408)
T COG1219 256 AEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEP-KNALVKQYQKLFEMDGVELEF 334 (408)
T ss_pred ccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcc-cHHHHHHHHHHhcccCceEEE
Confidence 0 0125678888888888777777666655444421 1234555543322 3455677
Q ss_pred hHHHHHHHHHHHHH
Q psy17703 529 SEEASQRLIQTYVD 542 (720)
Q Consensus 529 s~ea~~~l~~~y~~ 542 (720)
+++|...++....+
T Consensus 335 ~~~AL~~IA~~A~~ 348 (408)
T COG1219 335 TEEALKAIAKKAIE 348 (408)
T ss_pred cHHHHHHHHHHHHH
Confidence 88888887765543
No 91
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.08 E-value=4.3e-10 Score=123.62 Aligned_cols=188 Identities=22% Similarity=0.262 Sum_probs=111.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeee---cCCceeeccccccCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVL---ADSGVCCIDEFDKMS 422 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~l---ad~gI~~IDEidkm~ 422 (720)
.++||+||||||||++++++++.+....+.. ..+ .+....... +....+ ..+.. ...+|+||||+|.+.
T Consensus 157 ~gvLL~GppGtGKT~lakaia~~l~~~~~~v-~~~---~l~~~~~g~---~~~~i~-~~f~~a~~~~p~il~iDEiD~l~ 228 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKAVAHETNATFIRV-VGS---ELVRKYIGE---GARLVR-EIFELAKEKAPSIIFIDEIDAIA 228 (364)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhCCCCEEec-chH---HHHHHhhhH---HHHHHH-HHHHHHHhcCCcEEEhhhhhhhc
Confidence 3699999999999999999999775432211 000 010000000 000000 00011 134699999999873
Q ss_pred -----------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeE
Q psy17703 423 -----------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLI 489 (720)
Q Consensus 423 -----------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli 489 (720)
...+..+.+.+.+-. +. .-..++.+|+|+|... .+++++++ |||..
T Consensus 229 ~~~~~~~~~~~~~~~~~l~~ll~~ld------~~--~~~~~v~vI~ttn~~~-------------~ld~al~r~grfd~~ 287 (364)
T TIGR01242 229 AKRTDSGTSGDREVQRTLMQLLAELD------GF--DPRGNVKVIAATNRPD-------------ILDPALLRPGRFDRI 287 (364)
T ss_pred cccccCCCCccHHHHHHHHHHHHHhh------CC--CCCCCEEEEEecCChh-------------hCChhhcCcccCceE
Confidence 233445555554311 10 1123678999999654 47888886 99988
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE 568 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~ 568 (720)
+.+..|..++....+..| ++. .+.+.+. .+.+.. . . -..+.+.+.++++.|.
T Consensus 288 i~v~~P~~~~r~~Il~~~------------~~~~~l~~~~~---~~~la~----~---t-----~g~sg~dl~~l~~~A~ 340 (364)
T TIGR01242 288 IEVPLPDFEGRLEILKIH------------TRKMKLAEDVD---LEAIAK----M---T-----EGASGADLKAICTEAG 340 (364)
T ss_pred EEeCCcCHHHHHHHHHHH------------HhcCCCCccCC---HHHHHH----H---c-----CCCCHHHHHHHHHHHH
Confidence 888877766654444322 111 1111111 111111 0 1 1245699999999999
Q ss_pred HHHHHcCCCCCCHHhHHHHHH
Q psy17703 569 AHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 569 A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
..|..+.+..|+.+|+.+|+.
T Consensus 341 ~~a~~~~~~~i~~~d~~~a~~ 361 (364)
T TIGR01242 341 MFAIREERDYVTMDDFIKAVE 361 (364)
T ss_pred HHHHHhCCCccCHHHHHHHHH
Confidence 999888999999999999976
No 92
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=2e-09 Score=121.40 Aligned_cols=185 Identities=16% Similarity=0.177 Sum_probs=105.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCccccCC---------------ccccccccceeecCc-cccceeeecc-eeeecC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGK---------------GSSAVGLTAYITKDP-ETRQMVLQTG-ALVLAD 409 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~---------------~ss~~glta~~~~~~-~~~~~~~~~G-~l~lad 409 (720)
.+||+||||||||++|+.+++.+.......+. ......+.++..+.. ..++..-... .-..++
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~ 117 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGK 117 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCC
Confidence 37999999999999999999976432111110 001111111100000 0000000000 012345
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEE-ecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSIL-AAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL 488 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~ii-aaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl 488 (720)
..+++|||++.|+.+.+++|+..||+. +..+.++ +++||. .+++++.|||.
T Consensus 118 ~kVvIIDE~h~Lt~~a~~~LLk~LE~p-------------~~~vv~Ilattn~~--------------kl~~~L~SR~~- 169 (472)
T PRK14962 118 YKVYIIDEVHMLTKEAFNALLKTLEEP-------------PSHVVFVLATTNLE--------------KVPPTIISRCQ- 169 (472)
T ss_pred eEEEEEEChHHhHHHHHHHHHHHHHhC-------------CCcEEEEEEeCChH--------------hhhHHHhcCcE-
Confidence 679999999999999999999999862 1223444 444432 37899999996
Q ss_pred EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE 568 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~ 568 (720)
++.+..++.++.... +..+.+.-.-.+++++.+.|++..- ...|.+..++..+.
T Consensus 170 vv~f~~l~~~el~~~-------------L~~i~~~egi~i~~eal~~Ia~~s~-------------GdlR~aln~Le~l~ 223 (472)
T PRK14962 170 VIEFRNISDELIIKR-------------LQEVAEAEGIEIDREALSFIAKRAS-------------GGLRDALTMLEQVW 223 (472)
T ss_pred EEEECCccHHHHHHH-------------HHHHHHHcCCCCCHHHHHHHHHHhC-------------CCHHHHHHHHHHHH
Confidence 677777766554322 3222222345789999988875321 12365555444322
Q ss_pred HHHHHcCCCCCCHHhHHHHHH
Q psy17703 569 AHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 569 A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
+. . ...++.+|+.+++.
T Consensus 224 ~~---~-~~~It~e~V~~~l~ 240 (472)
T PRK14962 224 KF---S-EGKITLETVHEALG 240 (472)
T ss_pred Hh---c-CCCCCHHHHHHHHc
Confidence 22 1 23599999998865
No 93
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.07 E-value=1.4e-09 Score=123.58 Aligned_cols=215 Identities=22% Similarity=0.270 Sum_probs=139.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCc--c--ccCCccccccc---cceeecCccccceeeecceeeecCCceeecc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ--Y--TSGKGSSAVGL---TAYITKDPETRQMVLQTGALVLADSGVCCID 416 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~--~--~~g~~ss~~gl---ta~~~~~~~~~~~~~~~G~l~lad~gI~~ID 416 (720)
.++++++.|++||||+.++++++...++.. + ..........+ ..+..+...++...-..|.+..+++|++|||
T Consensus 156 ~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 235 (463)
T TIGR01818 156 SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLD 235 (463)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEE
Confidence 578999999999999999999999876531 1 11110000000 0000111122233335678889999999999
Q ss_pred ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee-EEEecCC
Q psy17703 417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL-IFLLLDP 495 (720)
Q Consensus 417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl-i~~l~d~ 495 (720)
|++.|+.+.|..|+++++++.+.. .|.....+.++.+|+|+|.... .....-.+.+.|+.|+.. .+.+++.
T Consensus 236 ei~~l~~~~q~~ll~~l~~~~~~~--~~~~~~~~~~~rii~~~~~~l~------~~~~~~~f~~~L~~rl~~~~i~lPpL 307 (463)
T TIGR01818 236 EIGDMPLDAQTRLLRVLADGEFYR--VGGRTPIKVDVRIVAATHQNLE------ALVRQGKFREDLFHRLNVIRIHLPPL 307 (463)
T ss_pred chhhCCHHHHHHHHHHHhcCcEEE--CCCCceeeeeeEEEEeCCCCHH------HHHHcCCcHHHHHHHhCcceecCCCc
Confidence 999999999999999999888764 4555566677889999986531 112223577789999873 4555544
Q ss_pred ChHHHHHHHHhhcchhHHHHHHHHHHhhc---CCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703 496 QSEQFDARLARHLDITVLRDYIAYAQEHL---SPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK 572 (720)
Q Consensus 496 ~~~~~d~~la~~i~~~~l~~~i~~ar~~~---~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~ 572 (720)
.+...| +. .+++.|+..+.... .+.+++++.+.|..| +||.+.|+|+.+++-+-..|
T Consensus 308 r~R~~D--i~-----~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~------------~wpgNvreL~~~~~~~~~~~- 367 (463)
T TIGR01818 308 RERRED--IP-----RLARHFLALAARELDVEPKLLDPEALERLKQL------------RWPGNVRQLENLCRWLTVMA- 367 (463)
T ss_pred ccchhh--HH-----HHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC------------CCCChHHHHHHHHHHHHHhC-
Confidence 432211 11 12334444333322 257999999988754 58888999999988765543
Q ss_pred HcCCCCCCHHhHHHHH
Q psy17703 573 MRYSETVEVQDVDEAW 588 (720)
Q Consensus 573 l~~~~~V~~~Dv~~Ai 588 (720)
....++.+|+...+
T Consensus 368 --~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 368 --SGDEVLVSDLPAEL 381 (463)
T ss_pred --CCCcccHHhchHHH
Confidence 23578888876554
No 94
>KOG0989|consensus
Probab=99.06 E-value=2.1e-09 Score=110.79 Aligned_cols=152 Identities=18% Similarity=0.260 Sum_probs=89.4
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCC-CccccCC----ccccccccceeecCcccccee----ee--cceeeecCCce
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPR-SQYTSGK----GSSAVGLTAYITKDPETRQMV----LQ--TGALVLADSGV 412 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr-~~~~~g~----~ss~~glta~~~~~~~~~~~~----~~--~G~l~lad~gI 412 (720)
.-.|.||+||||||||+.++++++.+.. ..+-++. .+..-|.. +.+... ..+. .. .-.-+...-.|
T Consensus 56 ~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis--vvr~Ki-k~fakl~~~~~~~~~~~~~~fKi 132 (346)
T KOG0989|consen 56 ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS--VVREKI-KNFAKLTVLLKRSDGYPCPPFKI 132 (346)
T ss_pred CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc--chhhhh-cCHHHHhhccccccCCCCCcceE
Confidence 3469999999999999999999986632 1111111 11111111 111110 0000 00 00011122368
Q ss_pred eeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEe
Q psy17703 413 CCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLL 492 (720)
Q Consensus 413 ~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l 492 (720)
++|||.|.|..+.|.+|+.+||....+ .+|.+| +|-.. ++++++.||+- -|.+
T Consensus 133 iIlDEcdsmtsdaq~aLrr~mE~~s~~-----------trFiLI--cnyls-------------rii~pi~SRC~-KfrF 185 (346)
T KOG0989|consen 133 IILDECDSMTSDAQAALRRTMEDFSRT-----------TRFILI--CNYLS-------------RIIRPLVSRCQ-KFRF 185 (346)
T ss_pred EEEechhhhhHHHHHHHHHHHhccccc-----------eEEEEE--cCChh-------------hCChHHHhhHH-HhcC
Confidence 999999999999999999999963221 234444 44222 69999999996 6777
Q ss_pred cCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHH
Q psy17703 493 LDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQ 538 (720)
Q Consensus 493 ~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~ 538 (720)
....++..-.+|. +....-.-.+.+++.+.|+.
T Consensus 186 k~L~d~~iv~rL~-------------~Ia~~E~v~~d~~al~~I~~ 218 (346)
T KOG0989|consen 186 KKLKDEDIVDRLE-------------KIASKEGVDIDDDALKLIAK 218 (346)
T ss_pred CCcchHHHHHHHH-------------HHHHHhCCCCCHHHHHHHHH
Confidence 7776654332322 22223355677888877763
No 95
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.06 E-value=6.7e-10 Score=123.53 Aligned_cols=192 Identities=17% Similarity=0.199 Sum_probs=110.8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeec---CCceeeccccccCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLA---DSGVCCIDEFDKMS 422 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~la---d~gI~~IDEidkm~ 422 (720)
.++||+||||||||++++++++.+....+. -.++...+ ..... +...+ ...+..| ...|+||||+|.+.
T Consensus 218 ~gVLL~GPPGTGKT~LAraIA~el~~~fi~-V~~seL~~---k~~Ge---~~~~v-r~lF~~A~~~~P~ILfIDEID~l~ 289 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLAKAVANETSATFLR-VVGSELIQ---KYLGD---GPKLV-RELFRVAEENAPSIVFIDEIDAIG 289 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEE-Eecchhhh---hhcch---HHHHH-HHHHHHHHhCCCcEEeHHHHHHHh
Confidence 479999999999999999999976532211 01111100 00000 00000 0001111 24689999998763
Q ss_pred h-----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeE
Q psy17703 423 D-----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLI 489 (720)
Q Consensus 423 ~-----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli 489 (720)
. +.+..+.+.+.+- .|.. -..++.||+|+|... .+++++++ |||..
T Consensus 290 ~kR~~~~sgg~~e~qr~ll~LL~~L------dg~~--~~~~V~VI~ATNr~d-------------~LDpaLlRpGRfd~~ 348 (438)
T PTZ00361 290 TKRYDATSGGEKEIQRTMLELLNQL------DGFD--SRGDVKVIMATNRIE-------------SLDPALIRPGRIDRK 348 (438)
T ss_pred ccCCCCCCcccHHHHHHHHHHHHHH------hhhc--ccCCeEEEEecCChH-------------HhhHHhccCCeeEEE
Confidence 2 2233444444321 1110 123578999999554 47889986 99999
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
+.+..|..+.+...+..|. . +..+.+.+. .+.++ ... -..|.+.+.++++-|.-
T Consensus 349 I~~~~Pd~~~R~~Il~~~~---------~--k~~l~~dvd---l~~la----~~t--------~g~sgAdI~~i~~eA~~ 402 (438)
T PTZ00361 349 IEFPNPDEKTKRRIFEIHT---------S--KMTLAEDVD---LEEFI----MAK--------DELSGADIKAICTEAGL 402 (438)
T ss_pred EEeCCCCHHHHHHHHHHHH---------h--cCCCCcCcC---HHHHH----Hhc--------CCCCHHHHHHHHHHHHH
Confidence 9998887766554444321 1 111111111 11111 111 12456889999998888
Q ss_pred HHHHcCCCCCCHHhHHHHHHHHH
Q psy17703 570 HAKMRYSETVEVQDVDEAWRLHR 592 (720)
Q Consensus 570 ~A~l~~~~~V~~~Dv~~Ai~l~~ 592 (720)
.|.-+.+..|+.+|+.+|++-..
T Consensus 403 ~Alr~~r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 403 LALRERRMKVTQADFRKAKEKVL 425 (438)
T ss_pred HHHHhcCCccCHHHHHHHHHHHH
Confidence 88888899999999999988543
No 96
>CHL00176 ftsH cell division protein; Validated
Probab=99.05 E-value=1.2e-09 Score=127.00 Aligned_cols=191 Identities=21% Similarity=0.240 Sum_probs=109.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCc-cccCCcc--ccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQ-YTSGKGS--SAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~-~~~g~~s--s~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
..++||+||||||||.++++++..+.... +.++... ...|..+...++ ....+ ......|+||||+|.+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~-----lF~~A---~~~~P~ILfIDEID~l 287 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRD-----LFKKA---KENSPCIVFIDEIDAV 287 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHH-----HHHHH---hcCCCcEEEEecchhh
Confidence 35799999999999999999998763222 2211110 001111100000 00000 0112469999999987
Q ss_pred Ch-----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--ccee
Q psy17703 422 SD-----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDL 488 (720)
Q Consensus 422 ~~-----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdl 488 (720)
.. ..+..|...+.+- .|. .-+.++.+|||+|... .++++|++ |||.
T Consensus 288 ~~~r~~~~~~~~~e~~~~L~~LL~~~------dg~--~~~~~ViVIaaTN~~~-------------~LD~ALlRpGRFd~ 346 (638)
T CHL00176 288 GRQRGAGIGGGNDEREQTLNQLLTEM------DGF--KGNKGVIVIAATNRVD-------------ILDAALLRPGRFDR 346 (638)
T ss_pred hhcccCCCCCCcHHHHHHHHHHHhhh------ccc--cCCCCeeEEEecCchH-------------hhhhhhhccccCce
Confidence 42 2233444444321 111 1134678999999654 47788987 9999
Q ss_pred EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE 568 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~ 568 (720)
.+.+..|+.+++...+..|+ .. .+...+.....+.. . ....+.+.|..+++-|.
T Consensus 347 ~I~v~lPd~~~R~~IL~~~l---------~~-----~~~~~d~~l~~lA~----------~--t~G~sgaDL~~lvneAa 400 (638)
T CHL00176 347 QITVSLPDREGRLDILKVHA---------RN-----KKLSPDVSLELIAR----------R--TPGFSGADLANLLNEAA 400 (638)
T ss_pred EEEECCCCHHHHHHHHHHHH---------hh-----cccchhHHHHHHHh----------c--CCCCCHHHHHHHHHHHH
Confidence 99888887666555444332 11 11111112222210 0 11245699999998776
Q ss_pred HHHHHcCCCCCCHHhHHHHHHH
Q psy17703 569 AHAKMRYSETVEVQDVDEAWRL 590 (720)
Q Consensus 569 A~A~l~~~~~V~~~Dv~~Ai~l 590 (720)
..|.-+....++.+|+++|++-
T Consensus 401 l~a~r~~~~~It~~dl~~Ai~r 422 (638)
T CHL00176 401 ILTARRKKATITMKEIDTAIDR 422 (638)
T ss_pred HHHHHhCCCCcCHHHHHHHHHH
Confidence 6666677788999999999864
No 97
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.05 E-value=5.6e-10 Score=125.31 Aligned_cols=208 Identities=21% Similarity=0.252 Sum_probs=138.7
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCC---cc-------ccCCccccccccceeecCcccccee-eecceeeecCCce
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRS---QY-------TSGKGSSAVGLTAYITKDPETRQMV-LQTGALVLADSGV 412 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~---~~-------~~g~~ss~~glta~~~~~~~~~~~~-~~~G~l~lad~gI 412 (720)
.++++|+.|+|||||-.|+++++...... +. .+..++..+|..++ ..+|.+. -..|.+..|++|.
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~G----afTga~~kG~~g~~~~A~gGt 410 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAG----AFTGARRKGYKGKLEQADGGT 410 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCcc----ccccchhccccccceecCCCc
Confidence 68899999999999999999999866421 00 01112222222221 2222222 2357888999999
Q ss_pred eeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEe
Q psy17703 413 CCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLL 492 (720)
Q Consensus 413 ~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l 492 (720)
+|+|||..|+-+.|..|+++++++.|+- -|... .+.++.||+|++.. -..++++-.+...|+.|.. .+.+
T Consensus 411 lFldeIgd~p~~~Qs~LLrVl~e~~v~p--~g~~~-~~vdirvi~ath~d------l~~lv~~g~fredLyyrL~-~~~i 480 (606)
T COG3284 411 LFLDEIGDMPLALQSRLLRVLQEGVVTP--LGGTR-IKVDIRVIAATHRD------LAQLVEQGRFREDLYYRLN-AFVI 480 (606)
T ss_pred cHHHHhhhchHHHHHHHHHHHhhCceec--cCCcc-eeEEEEEEeccCcC------HHHHHHcCCchHHHHHHhc-Ceee
Confidence 9999999999999999999999999874 67666 89999999999943 2345666678899999987 3333
Q ss_pred cCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703 493 LDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK 572 (720)
Q Consensus 493 ~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~ 572 (720)
.-|+-.++...+ ..|..|...-. ...-.+++++...|..+ .||.+.|+|.++++.+-+++
T Consensus 481 ~lP~lr~R~d~~------~~l~~~~~~~~-~~~~~l~~~~~~~l~~~------------~WPGNirel~~v~~~~~~l~- 540 (606)
T COG3284 481 TLPPLRERSDRI------PLLDRILKREN-DWRLQLDDDALARLLAY------------RWPGNIRELDNVIERLAALS- 540 (606)
T ss_pred ccCchhcccccH------HHHHHHHHHcc-CCCccCCHHHHHHHHhC------------CCCCcHHHHHHHHHHHHHcC-
Confidence 333333322221 12322222111 13457889998888754 58999999999998776543
Q ss_pred HcCCCCCCHHhHHHH
Q psy17703 573 MRYSETVEVQDVDEA 587 (720)
Q Consensus 573 l~~~~~V~~~Dv~~A 587 (720)
....+...|+...
T Consensus 541 --~~g~~~~~dlp~~ 553 (606)
T COG3284 541 --DGGRIRVSDLPPE 553 (606)
T ss_pred --CCCeeEcccCCHH
Confidence 3334555555444
No 98
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.05 E-value=1.9e-09 Score=120.40 Aligned_cols=177 Identities=22% Similarity=0.297 Sum_probs=106.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCccccccccceeecCccccceeeec-ceeeecCCceeeccccccCCh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYITKDPETRQMVLQT-GALVLADSGVCCIDEFDKMSD 423 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~~~~~~~~~~~~~~-G~l~lad~gI~~IDEidkm~~ 423 (720)
.|++|+||||||||++++.+++.+....+. +... ... ... ....... .......+.+++|||+++++.
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~-~~~----~~i-----r~ii~~~~~~~~~g~~~vL~IDEi~~l~~ 106 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT-SGV----KDL-----REVIEEARQRRSAGRRTILFIDEIHRFNK 106 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc-ccH----HHH-----HHHHHHHHHhhhcCCceEEEEechhhhCH
Confidence 489999999999999999999866432211 1110 000 000 0000000 000112467999999999999
Q ss_pred HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecc--cCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHH
Q psy17703 424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAA--NPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFD 501 (720)
Q Consensus 424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaa--Np~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d 501 (720)
..+++|+..||++.+ .+++++ ||.. .++++|+||| .++.+..++.++..
T Consensus 107 ~~q~~LL~~le~~~i---------------ilI~att~n~~~-------------~l~~aL~SR~-~~~~~~~ls~e~i~ 157 (413)
T PRK13342 107 AQQDALLPHVEDGTI---------------TLIGATTENPSF-------------EVNPALLSRA-QVFELKPLSEEDIE 157 (413)
T ss_pred HHHHHHHHHhhcCcE---------------EEEEeCCCChhh-------------hccHHHhccc-eeeEeCCCCHHHHH
Confidence 999999999987543 344443 3322 5789999999 57778877766544
Q ss_pred HHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCH
Q psy17703 502 ARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEV 581 (720)
Q Consensus 502 ~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~ 581 (720)
..+.+ .+......+ ..+++++.+.+.... ...+|.+..++..+... ...++.
T Consensus 158 ~lL~~---------~l~~~~~~~-i~i~~~al~~l~~~s-------------~Gd~R~aln~Le~~~~~-----~~~It~ 209 (413)
T PRK13342 158 QLLKR---------ALEDKERGL-VELDDEALDALARLA-------------NGDARRALNLLELAALG-----VDSITL 209 (413)
T ss_pred HHHHH---------HHHHhhcCC-CCCCHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHc-----cCCCCH
Confidence 33332 111111111 257888877776431 12357777766654332 467888
Q ss_pred HhHHHHHH
Q psy17703 582 QDVDEAWR 589 (720)
Q Consensus 582 ~Dv~~Ai~ 589 (720)
+++.+++.
T Consensus 210 ~~v~~~~~ 217 (413)
T PRK13342 210 ELLEEALQ 217 (413)
T ss_pred HHHHHHHh
Confidence 88888765
No 99
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.03 E-value=1e-09 Score=132.05 Aligned_cols=202 Identities=14% Similarity=0.182 Sum_probs=119.0
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCccccccccceeecCccccceeeeccee----eecCCceeecccc
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTAYITKDPETRQMVLQTGAL----VLADSGVCCIDEF 418 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l----~lad~gI~~IDEi 418 (720)
.+||+||||+|||.+++++++.+-.. +...+......+........+....-.-+.|.+ -....+|++||||
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEi 677 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEV 677 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEech
Confidence 48999999999999999999976211 111111000000000000010000000122222 1234679999999
Q ss_pred ccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCC-----C-----ccccc------ccCCChhh
Q psy17703 419 DKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT-----S-----KTIID------NIRLPHTL 482 (720)
Q Consensus 419 dkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~-----~-----~~~~~------~~~l~~aL 482 (720)
+|++++.++.|+++|+++.++.. .|....+. ++.+|.|+|--...|.. . ..+.. .-.|+|+|
T Consensus 678 eka~~~v~~~Llq~ld~g~l~d~-~Gr~vd~~-n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf 755 (852)
T TIGR03345 678 EKAHPDVLELFYQVFDKGVMEDG-EGREIDFK-NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAF 755 (852)
T ss_pred hhcCHHHHHHHHHHhhcceeecC-CCcEEecc-ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999998753 45554443 68999999964443321 0 00011 01489999
Q ss_pred hccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHH
Q psy17703 483 LSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLE 561 (720)
Q Consensus 483 lsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le 561 (720)
++|++ ++.+.+...++..+.+...+.. +.+. ++.+ .+.-.+++++.+.|.+.....+ .-.|.|.
T Consensus 756 lnRi~-iI~F~pLs~e~l~~Iv~~~L~~--l~~r--l~~~~gi~l~i~d~a~~~La~~g~~~~----------~GAR~L~ 820 (852)
T TIGR03345 756 LGRMT-VIPYLPLDDDVLAAIVRLKLDR--IARR--LKENHGAELVYSEALVEHIVARCTEVE----------SGARNID 820 (852)
T ss_pred hccee-EEEeCCCCHHHHHHHHHHHHHH--HHHH--HHHhcCceEEECHHHHHHHHHHcCCCC----------CChHHHH
Confidence 99999 7788888777776665544311 1111 2222 4566789999999886543211 1137777
Q ss_pred HHHH
Q psy17703 562 SLIR 565 (720)
Q Consensus 562 ~lir 565 (720)
.+++
T Consensus 821 r~Ie 824 (852)
T TIGR03345 821 AILN 824 (852)
T ss_pred HHHH
Confidence 7664
No 100
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.02 E-value=1.6e-09 Score=123.79 Aligned_cols=187 Identities=23% Similarity=0.253 Sum_probs=105.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCc--cccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKG--SSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~--ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
.++||+||||||||++++++++.+....+ .++.. +...|.+....++ ....+ .....+|+||||+|.+.
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~-----~f~~a---~~~~p~Il~iDEid~l~ 160 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRD-----LFEQA---KKNAPCIIFIDEIDAVG 160 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHH-----HHHHH---HhcCCCEEEEechhhhh
Confidence 46999999999999999999987643322 11110 0001111110000 00000 01135799999999875
Q ss_pred hHH--------------HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703 423 DTT--------------RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF 486 (720)
Q Consensus 423 ~~~--------------~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF 486 (720)
... .+.|+..|+. . .-+.++.||||+|+.. .++++|++ ||
T Consensus 161 ~~r~~~~~~~~~~~~~~~~~lL~~~d~---------~--~~~~~v~vI~aTn~~~-------------~ld~al~r~gRf 216 (495)
T TIGR01241 161 RQRGAGLGGGNDEREQTLNQLLVEMDG---------F--GTNTGVIVIAATNRPD-------------VLDPALLRPGRF 216 (495)
T ss_pred hccccCcCCccHHHHHHHHHHHhhhcc---------c--cCCCCeEEEEecCChh-------------hcCHHHhcCCcc
Confidence 321 1122333321 0 1123578999999765 58899997 99
Q ss_pred eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703 487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL 566 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl 566 (720)
|..+.+..|+.+++.+.+..++ +. .... ++...+.+.+ + ....+.+.++.+++-
T Consensus 217 d~~i~i~~Pd~~~R~~il~~~l------------~~-~~~~-~~~~l~~la~-----~-------t~G~sgadl~~l~~e 270 (495)
T TIGR01241 217 DRQVVVDLPDIKGREEILKVHA------------KN-KKLA-PDVDLKAVAR-----R-------TPGFSGADLANLLNE 270 (495)
T ss_pred eEEEEcCCCCHHHHHHHHHHHH------------hc-CCCC-cchhHHHHHH-----h-------CCCCCHHHHHHHHHH
Confidence 9998888887666554444321 11 1100 1111111111 0 112456888888887
Q ss_pred HHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703 567 SEAHAKMRYSETVEVQDVDEAWRL 590 (720)
Q Consensus 567 a~A~A~l~~~~~V~~~Dv~~Ai~l 590 (720)
|...|.-+.+..++.+|+.+|+.-
T Consensus 271 A~~~a~~~~~~~i~~~~l~~a~~~ 294 (495)
T TIGR01241 271 AALLAARKNKTEITMNDIEEAIDR 294 (495)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHH
Confidence 666665666778999999998774
No 101
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.02 E-value=2.3e-09 Score=129.37 Aligned_cols=187 Identities=16% Similarity=0.159 Sum_probs=112.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC----CccccCCccccccccceeecCccccceeeecc----eeeecCCceeecccc
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR----SQYTSGKGSSAVGLTAYITKDPETRQMVLQTG----ALVLADSGVCCIDEF 418 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr----~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G----~l~lad~gI~~IDEi 418 (720)
.+||+||||+|||.+++++++.+-. .+...+...............+....-.-+.| ++......|+++||+
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDei 620 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEI 620 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECCh
Confidence 4799999999999999999997631 11111110000000000000000000000111 112233479999999
Q ss_pred ccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCC---------CCCCCc------c---ccc------
Q psy17703 419 DKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDS---------QWNTSK------T---IID------ 474 (720)
Q Consensus 419 dkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g---------~~~~~~------~---~~~------ 474 (720)
++++++.++.|+++||++.++..+ |....+ .++.+|.|+|--.. +|.... . +.+
T Consensus 621 eka~~~v~~~Llq~le~g~~~d~~-g~~v~~-~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~ 698 (821)
T CHL00095 621 EKAHPDIFNLLLQILDDGRLTDSK-GRTIDF-KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEEL 698 (821)
T ss_pred hhCCHHHHHHHHHHhccCceecCC-CcEEec-CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHH
Confidence 999999999999999999988644 444444 47999999995321 121100 0 000
Q ss_pred ccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703 475 NIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT 539 (720)
Q Consensus 475 ~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~ 539 (720)
.-.++|+|++|+|-++.+.+...++..+.+...+. .+.+.+ +.+.+.-.+++++.+.|.+.
T Consensus 699 ~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~--~l~~rl--~~~~i~l~~~~~~~~~La~~ 759 (821)
T CHL00095 699 KQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLK--NLFKRL--NEQGIQLEVTERIKTLLIEE 759 (821)
T ss_pred HHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHH--HHHHHH--HHCCcEEEECHHHHHHHHHh
Confidence 01489999999999999999988877666554331 122222 33456778899999988764
No 102
>KOG0738|consensus
Probab=99.02 E-value=7.3e-10 Score=116.92 Aligned_cols=126 Identities=25% Similarity=0.273 Sum_probs=78.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeeccee-----eec---CCceeeccc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGAL-----VLA---DSGVCCIDE 417 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l-----~la---d~gI~~IDE 417 (720)
--||++||||||||+||++|+....-..|. .++..++. .|.-+.-.+ .+| ...++||||
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~tTFFN----VSsstltS---------KwRGeSEKlvRlLFemARfyAPStIFiDE 312 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGTTFFN----VSSSTLTS---------KWRGESEKLVRLLFEMARFYAPSTIFIDE 312 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcCeEEE----echhhhhh---------hhccchHHHHHHHHHHHHHhCCceeehhh
Confidence 479999999999999999999765421111 11111211 111111111 111 257899999
Q ss_pred cccCC------------hHHHHHHHHHHHhceEeeeccCeEEeec--CceEEEecccCCCCCCCCCcccccccCCChhhh
Q psy17703 418 FDKMS------------DTTRSILHEVMEQQTLSIAKAGIICQLN--ARTSILAAANPCDSQWNTSKTIIDNIRLPHTLL 483 (720)
Q Consensus 418 idkm~------------~~~~~~L~e~mE~~~vsi~k~g~~~~l~--a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLl 483 (720)
||.+- ....+-|+--|+ |...++. ..+.|+||+|-++ +|+.||+
T Consensus 313 IDslcs~RG~s~EHEaSRRvKsELLvQmD---------G~~~t~e~~k~VmVLAATN~PW-------------diDEAlr 370 (491)
T KOG0738|consen 313 IDSLCSQRGGSSEHEASRRVKSELLVQMD---------GVQGTLENSKVVMVLAATNFPW-------------DIDEALR 370 (491)
T ss_pred HHHHHhcCCCccchhHHHHHHHHHHHHhh---------ccccccccceeEEEEeccCCCc-------------chHHHHH
Confidence 98863 223445555553 3333333 3588999999877 6899999
Q ss_pred ccceeEEEecCCChHHHHHHHHh
Q psy17703 484 SRFDLIFLLLDPQSEQFDARLAR 506 (720)
Q Consensus 484 sRFdli~~l~d~~~~~~d~~la~ 506 (720)
+||.-.+.++-|..+.+...|..
T Consensus 371 RRlEKRIyIPLP~~~~R~~Li~~ 393 (491)
T KOG0738|consen 371 RRLEKRIYIPLPDAEARSALIKI 393 (491)
T ss_pred HHHhhheeeeCCCHHHHHHHHHH
Confidence 99997777777766665544443
No 103
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=6.4e-09 Score=122.15 Aligned_cols=150 Identities=21% Similarity=0.215 Sum_probs=88.7
Q ss_pred cE-EEEcCCCCHHHHHHHHHHhhCCCCccccCC---------------cccccccccee-ecCccccc----eeeeccee
Q psy17703 347 NI-LLCGDPGTSKSQLLSYVYDLVPRSQYTSGK---------------GSSAVGLTAYI-TKDPETRQ----MVLQTGAL 405 (720)
Q Consensus 347 ~v-LL~G~PGtGKS~ll~~va~~~pr~~~~~g~---------------~ss~~glta~~-~~~~~~~~----~~~~~G~l 405 (720)
|. ||+||||||||++++.+++.+.......+. ......+.+.. .+-...++ ....+
T Consensus 39 HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P--- 115 (944)
T PRK14949 39 HAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRP--- 115 (944)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhh---
Confidence 54 899999999999999999987543111110 00001011110 00000011 11111
Q ss_pred eecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcc
Q psy17703 406 VLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSR 485 (720)
Q Consensus 406 ~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsR 485 (720)
......|++|||+++|+.+.+++|+..||+- |..+.+|.++|... .|+++++||
T Consensus 116 ~~gk~KViIIDEAh~LT~eAqNALLKtLEEP-------------P~~vrFILaTTe~~-------------kLl~TIlSR 169 (944)
T PRK14949 116 SRGRFKVYLIDEVHMLSRSSFNALLKTLEEP-------------PEHVKFLLATTDPQ-------------KLPVTVLSR 169 (944)
T ss_pred hcCCcEEEEEechHhcCHHHHHHHHHHHhcc-------------CCCeEEEEECCCch-------------hchHHHHHh
Confidence 1123569999999999999999999999963 23334444444221 478999999
Q ss_pred ceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703 486 FDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT 539 (720)
Q Consensus 486 Fdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~ 539 (720)
+ .+|.+...+.++. ++|+...-..-...+++++.+.|...
T Consensus 170 C-q~f~fkpLs~eEI-------------~~~L~~il~~EgI~~edeAL~lIA~~ 209 (944)
T PRK14949 170 C-LQFNLKSLTQDEI-------------GTQLNHILTQEQLPFEAEALTLLAKA 209 (944)
T ss_pred h-eEEeCCCCCHHHH-------------HHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9 5788888776654 33333332222456788888887643
No 104
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.6e-09 Score=125.85 Aligned_cols=190 Identities=17% Similarity=0.174 Sum_probs=118.0
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC----CccccCCccccccccceeecCccccceeeecceeeec----CCceeecccc
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR----SQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLA----DSGVCCIDEF 418 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr----~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~la----d~gI~~IDEi 418 (720)
..||.||+|+|||.|++++|..+-. .+...+.+...-+........+....-.-+.|.|.-+ .-.|+++|||
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEI 602 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEI 602 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechh
Confidence 7899999999999999999997742 1112222111111111111111111111223433322 2469999999
Q ss_pred ccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCC------C---CCCcccccc------cCCChhhh
Q psy17703 419 DKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQ------W---NTSKTIIDN------IRLPHTLL 483 (720)
Q Consensus 419 dkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~------~---~~~~~~~~~------~~l~~aLl 483 (720)
.|.+++..+.|+++|++++.+-.+. .... -.++.||.|+|--... . ...+...+. -.++|+|+
T Consensus 603 EKAHpdV~nilLQVlDdGrLTD~~G-r~Vd-FrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFL 680 (786)
T COG0542 603 EKAHPDVFNLLLQVLDDGRLTDGQG-RTVD-FRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFL 680 (786)
T ss_pred hhcCHHHHHHHHHHhcCCeeecCCC-CEEe-cceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHH
Confidence 9999999999999999999986443 2222 2468899999943111 0 001111111 16899999
Q ss_pred ccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH
Q psy17703 484 SRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVD 542 (720)
Q Consensus 484 sRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~ 542 (720)
+|+|-++.+.+...+...+++...+ ..+.+.+. ++.+.-.+++++.+.|.+...+
T Consensus 681 NRid~II~F~~L~~~~l~~Iv~~~L--~~l~~~L~--~~~i~l~~s~~a~~~l~~~gyd 735 (786)
T COG0542 681 NRIDEIIPFNPLSKEVLERIVDLQL--NRLAKRLA--ERGITLELSDEAKDFLAEKGYD 735 (786)
T ss_pred hhcccEEeccCCCHHHHHHHHHHHH--HHHHHHHH--hCCceEEECHHHHHHHHHhccC
Confidence 9999999998888776665555432 22333333 4567888999999999876543
No 105
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.00 E-value=2.7e-09 Score=112.19 Aligned_cols=204 Identities=16% Similarity=0.214 Sum_probs=115.3
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCC---ceeecccccc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADS---GVCCIDEFDK 420 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~---gI~~IDEidk 420 (720)
.+.|+||+||+|||||.+++...+.++...|....-......++..++.........+.|...-+.+ -|+|||+++-
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNM 111 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCC
Confidence 5789999999999999999988776654432211111111112221221111122223333332222 3899999976
Q ss_pred CChH------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecC
Q psy17703 421 MSDT------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLD 494 (720)
Q Consensus 421 m~~~------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d 494 (720)
-.++ ..+.|++.|+.+-+.-.+......+ .++.++||+||..|+ ..+++.|++.|- ++.+..
T Consensus 112 p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i-~~i~~vaa~~p~~Gr----------~~is~R~~r~f~-i~~~~~ 179 (272)
T PF12775_consen 112 PQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSI-EDIQFVAAMNPTGGR----------NPISPRFLRHFN-ILNIPY 179 (272)
T ss_dssp S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEE-CSEEEEEEESSTTT------------SHHHHHHTTEE-EEE---
T ss_pred CCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEE-eeeEEEEecCCCCCC----------CCCChHHhhheE-EEEecC
Confidence 5533 3578999999988775443333333 468999999997654 147899999996 666666
Q ss_pred CChHHHHHHHHhhcchhHHHHHHHHHH--hhcCCcchHHHHHHHHHHHHHhhhcCC---CCCCcccCHHHHHHHHH
Q psy17703 495 PQSEQFDARLARHLDITVLRDYIAYAQ--EHLSPTLSEEASQRLIQTYVDMRKLGA---GRGRISAYPRQLESLIR 565 (720)
Q Consensus 495 ~~~~~~d~~la~~i~~~~l~~~i~~ar--~~~~p~ls~ea~~~l~~~y~~lr~~~~---~~~~~~~t~R~le~lir 565 (720)
|.++....+... .+..++.... ..+ ..+.+....+.++.|..++..-. .+.+...++|.+.++++
T Consensus 180 p~~~sl~~If~~-----il~~~l~~~~f~~~v-~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlRDlsrv~q 249 (272)
T PF12775_consen 180 PSDESLNTIFSS-----ILQSHLKNGGFPEDV-QKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLRDLSRVFQ 249 (272)
T ss_dssp -TCCHHHHHHHH-----HHHHHTCHTTSSGGG-CCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHHHHHHHHH
T ss_pred CChHHHHHHHHH-----HHhhhcccCCCChHH-HHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHHHHHHHHH
Confidence 666655444332 2333322111 111 23456677788888888776432 24567777888877765
No 106
>KOG0990|consensus
Probab=98.99 E-value=7.8e-10 Score=114.45 Aligned_cols=269 Identities=16% Similarity=0.124 Sum_probs=140.9
Q ss_pred cCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccc-----cceeee--cceeee-cCCce
Q psy17703 341 ETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPET-----RQMVLQ--TGALVL-ADSGV 412 (720)
Q Consensus 341 E~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~-----~~~~~~--~G~l~l-ad~gI 412 (720)
+.++--|.|++||||||||....+.++.+... .+..+....+.++.-++... ..+... +-.+.. +.-..
T Consensus 58 ~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~---~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKl 134 (360)
T KOG0990|consen 58 GMPGLPHLLFYGPPGTGKTSTILANARDFYSP---HPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKL 134 (360)
T ss_pred cCCCCCcccccCCCCCCCCCchhhhhhhhcCC---CCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeE
Confidence 33444599999999999999999999877542 11222222232222111110 001000 011111 13457
Q ss_pred eeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEe
Q psy17703 413 CCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLL 492 (720)
Q Consensus 413 ~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l 492 (720)
+++||.|.|..+.|++|+++.|+.+.. +.+.--+|+.. .+.|++++||. .|.+
T Consensus 135 vILDEADaMT~~AQnALRRviek~t~n-------------~rF~ii~n~~~-------------ki~pa~qsRct-rfrf 187 (360)
T KOG0990|consen 135 VILDEADAMTRDAQNALRRVIEKYTAN-------------TRFATISNPPQ-------------KIHPAQQSRCT-RFRF 187 (360)
T ss_pred EEecchhHhhHHHHHHHHHHHHHhccc-------------eEEEEeccChh-------------hcCchhhcccc-cCCC
Confidence 899999999999999999987765433 33333345443 57899999996 5666
Q ss_pred cCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703 493 LDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK 572 (720)
Q Consensus 493 ~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~ 572 (720)
.+.+-.....++..++..+ + ...++-...++.|++
T Consensus 188 ~pl~~~~~~~r~shi~e~e-------------~---------------------------~~~~~~~~~a~~r~s----- 222 (360)
T KOG0990|consen 188 APLTMAQQTERQSHIRESE-------------Q---------------------------KETNPEGYSALGRLS----- 222 (360)
T ss_pred CCCChhhhhhHHHHHHhcc-------------h---------------------------hhcCHHHHHHHHHHh-----
Confidence 5554333322333221111 1 112222222333332
Q ss_pred HcCCCCCCHHhHHHHHHHHHHHHHHhc-cCCCCCcceeeeeccCCCHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Q psy17703 573 MRYSETVEVQDVDEAWRLHREALKQSA-TDPLSGKIDVSILTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIM 651 (720)
Q Consensus 573 l~~~~~V~~~Dv~~Ai~l~~~~l~~~~-~d~~~g~~d~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~ 651 (720)
.+|++.|+..++.+..... .+|.+--.|..+...|..... ++.+.+++++.........+.+++..
T Consensus 223 --------~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g~p~~~-----dI~~I~~~il~~~~~~~~~~is~lk~ 289 (360)
T KOG0990|consen 223 --------VGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKGAPQPS-----DIRQIIEKRMNGEDIELMLDDSELKK 289 (360)
T ss_pred --------HHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcCCCChh-----HHHHHHHHHhcCchHHHHhhhhhhhh
Confidence 6788999998887776654 344431122223335555332 35555555544322111222222222
Q ss_pred HHhhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecce
Q psy17703 652 DLKGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGI 697 (720)
Q Consensus 652 ~~~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~ 697 (720)
..+.+.........-+-...+++..++..|..-|...++.+++|+-
T Consensus 290 ~~gla~~d~i~~l~~~~~~~~~~~~~~~~I~~~l~~Ie~~ls~g~~ 335 (360)
T KOG0990|consen 290 PKGLARQDRRAELEQRFAIVISKTPVEGHILYQLADIEERLSKGCM 335 (360)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHhHHHHHHHHhcchh
Confidence 2222211111111111122345557788999999999999999874
No 107
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.99 E-value=3.5e-09 Score=128.23 Aligned_cols=203 Identities=19% Similarity=0.182 Sum_probs=119.1
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCccccccccceeecCccccce-eeeccee----eecCCceeecc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTAYITKDPETRQM-VLQTGAL----VLADSGVCCID 416 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta~~~~~~~~~~~-~~~~G~l----~lad~gI~~ID 416 (720)
..+||+||||||||.+|+++++.+.+. ++..+...............+. +-. ..+.|.+ ......|+++|
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~-g~~g~~~~g~l~~~v~~~p~~vlllD 674 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPP-GYVGYEEGGQLTEAVRRKPYSVVLFD 674 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCC-CccCcccccHHHHHHHcCCCcEEEEe
Confidence 369999999999999999999976321 1111111000000000000000 000 0011221 12234699999
Q ss_pred ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCC------Ccccc------cccCCChhhhc
Q psy17703 417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT------SKTII------DNIRLPHTLLS 484 (720)
Q Consensus 417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~------~~~~~------~~~~l~~aLls 484 (720)
|+++++++.++.|+++|+++.++.. .|....+ .++.||+|+|--...+.. ...+. -.-.++|.|+.
T Consensus 675 eieka~~~v~~~Ll~~l~~g~l~d~-~g~~vd~-rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~ 752 (852)
T TIGR03346 675 EVEKAHPDVFNVLLQVLDDGRLTDG-QGRTVDF-RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN 752 (852)
T ss_pred ccccCCHHHHHHHHHHHhcCceecC-CCeEEec-CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc
Confidence 9999999999999999999998853 3444443 358899999963221111 00110 12258999999
Q ss_pred cceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHH
Q psy17703 485 RFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLI 564 (720)
Q Consensus 485 RFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~li 564 (720)
|+|-++.+.++..+.....+...+ ..+.+.+ ....+...+++++.+.|.++-.+ .+...|.|..++
T Consensus 753 Rid~IivF~PL~~e~l~~I~~l~L--~~l~~~l--~~~~~~l~i~~~a~~~L~~~~~~----------~~~gaR~L~~~i 818 (852)
T TIGR03346 753 RIDEIVVFHPLGREQIARIVEIQL--GRLRKRL--AERKITLELSDAALDFLAEAGYD----------PVYGARPLKRAI 818 (852)
T ss_pred CcCeEEecCCcCHHHHHHHHHHHH--HHHHHHH--HHCCCeecCCHHHHHHHHHhCCC----------CCCCchhHHHHH
Confidence 999999998888776655544322 2222222 22345678999999998865221 112247777766
Q ss_pred H
Q psy17703 565 R 565 (720)
Q Consensus 565 r 565 (720)
+
T Consensus 819 ~ 819 (852)
T TIGR03346 819 Q 819 (852)
T ss_pred H
Confidence 5
No 108
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=1.6e-08 Score=111.14 Aligned_cols=185 Identities=18% Similarity=0.195 Sum_probs=104.7
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCCCCccccCCc---------------ccccccccee-ecCccccceeeecce-eeecCC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKG---------------SSAVGLTAYI-TKDPETRQMVLQTGA-LVLADS 410 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~---------------ss~~glta~~-~~~~~~~~~~~~~G~-l~lad~ 410 (720)
+||+||||+|||++++.+++.+.......+.. .....+.++. .+-....+..-.... -..++.
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~ 120 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRF 120 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCc
Confidence 69999999999999999999764211000000 0000000000 000000000000000 012345
Q ss_pred ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703 411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF 490 (720)
Q Consensus 411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~ 490 (720)
.+++|||+++|+...+++|+..||+- |..+.+|.++|-.. .+++++.||+ ..+
T Consensus 121 kviIIDEa~~l~~~a~naLLk~lEe~-------------~~~~~fIl~t~~~~-------------~l~~tI~SRc-~~~ 173 (363)
T PRK14961 121 KVYLIDEVHMLSRHSFNALLKTLEEP-------------PQHIKFILATTDVE-------------KIPKTILSRC-LQF 173 (363)
T ss_pred eEEEEEChhhcCHHHHHHHHHHHhcC-------------CCCeEEEEEcCChH-------------hhhHHHHhhc-eEE
Confidence 69999999999999999999999863 22333444443211 4889999999 577
Q ss_pred EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703 491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH 570 (720)
Q Consensus 491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~ 570 (720)
.+.+++.++.. +++...-+.....+++++.+.+.... ..++|....++.-+.+
T Consensus 174 ~~~~l~~~el~-------------~~L~~~~~~~g~~i~~~al~~ia~~s-------------~G~~R~al~~l~~~~~- 226 (363)
T PRK14961 174 KLKIISEEKIF-------------NFLKYILIKESIDTDEYALKLIAYHA-------------HGSMRDALNLLEHAIN- 226 (363)
T ss_pred eCCCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHHH-
Confidence 88877666543 23322222224567888888776431 1235766655543322
Q ss_pred HHHcCCCCCCHHhHHHHHH
Q psy17703 571 AKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 571 A~l~~~~~V~~~Dv~~Ai~ 589 (720)
. +...++.+++.+++.
T Consensus 227 --~-~~~~It~~~v~~~l~ 242 (363)
T PRK14961 227 --L-GKGNINIKNVTDMLG 242 (363)
T ss_pred --h-cCCCCCHHHHHHHHC
Confidence 2 467899999988764
No 109
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.96 E-value=4.2e-09 Score=110.05 Aligned_cols=213 Identities=15% Similarity=0.194 Sum_probs=137.7
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccc---eeeecceeeecCCceeecccccc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQ---MVLQTGALVLADSGVCCIDEFDK 420 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~---~~~~~G~l~lad~gI~~IDEidk 420 (720)
-|-++|+.|++||||-.+|++.+..+||...-. ..-..+++..........|. ..-..|.+..|++|.+|+|||..
T Consensus 226 lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pF-lalNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgE 304 (511)
T COG3283 226 LDAPLLITGETGTGKDLLAKACHLASPRHSKPF-LALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGE 304 (511)
T ss_pred cCCCeEEecCCCchHHHHHHHHhhcCcccCCCe-eEeecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhh
Confidence 467999999999999999999999998852110 00111111111111110010 12246888999999999999999
Q ss_pred CChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHH
Q psy17703 421 MSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQF 500 (720)
Q Consensus 421 m~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~ 500 (720)
|++..|..|+..+.++++. +.|......+++.||+|+.-.- ..+.+.-.+...|..|..+ ..+.-||-.+.
T Consensus 305 mSp~lQaKLLRFL~DGtFR--RVGee~Ev~vdVRVIcatq~nL------~~lv~~g~fReDLfyRLNV-Ltl~~PpLRer 375 (511)
T COG3283 305 MSPRLQAKLLRFLNDGTFR--RVGEDHEVHVDVRVICATQVNL------VELVQKGKFREDLFYRLNV-LTLNLPPLRER 375 (511)
T ss_pred cCHHHHHHHHHHhcCCcee--ecCCcceEEEEEEEEecccccH------HHHHhcCchHHHHHHHhhe-eeecCCccccC
Confidence 9999999999999999875 4888888999999999986332 1223333567778888872 22322222221
Q ss_pred HHHHHhhcchhHHHHHHHHHHhh---cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCC
Q psy17703 501 DARLARHLDITVLRDYIAYAQEH---LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSE 577 (720)
Q Consensus 501 d~~la~~i~~~~l~~~i~~ar~~---~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~ 577 (720)
-.-| ..+..-|+..+... ..|+++++....+..| +|+.+.|||...+= +|.+.+++ .
T Consensus 376 ~~di-----~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y------------~WpGNVRqL~N~iy--RA~s~~Eg-~ 435 (511)
T COG3283 376 PQDI-----MPLAELFVQQFSDELGVPRPKLAADLLTVLTRY------------AWPGNVRQLKNAIY--RALTLLEG-Y 435 (511)
T ss_pred cccc-----hHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHc------------CCCccHHHHHHHHH--HHHHHhcc-C
Confidence 1111 12334455544433 4789999998888754 68889999988653 34444443 4
Q ss_pred CCCHHhHHH
Q psy17703 578 TVEVQDVDE 586 (720)
Q Consensus 578 ~V~~~Dv~~ 586 (720)
.+..+|+.-
T Consensus 436 ~l~i~~i~L 444 (511)
T COG3283 436 ELRIEDILL 444 (511)
T ss_pred ccchhhccc
Confidence 566655543
No 110
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.96 E-value=5.9e-09 Score=117.53 Aligned_cols=215 Identities=18% Similarity=0.205 Sum_probs=134.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCc--cc--cCCccccccccc---eeecCccccceeeecceeeecCCceeecc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ--YT--SGKGSSAVGLTA---YITKDPETRQMVLQTGALVLADSGVCCID 416 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~--~~--~g~~ss~~glta---~~~~~~~~~~~~~~~G~l~lad~gI~~ID 416 (720)
.+.++++.|++||||+.++++++...++.. +. .........+-. +..+...++......|.+..|++|++|||
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld 240 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEe
Confidence 568999999999999999999998776431 11 111000000000 00011112222335788899999999999
Q ss_pred ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCC
Q psy17703 417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQ 496 (720)
Q Consensus 417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~ 496 (720)
|++.|+++.|..|+.+++.+.+.. .|.....+.++.+|+|++.... .....-.+.+.|+.||.. +.+.-|+
T Consensus 241 ei~~l~~~~q~~l~~~l~~~~~~~--~~~~~~~~~~~rii~~t~~~~~------~~~~~~~~~~~l~~~l~~-~~i~~pp 311 (441)
T PRK10365 241 EIGDISPMMQVRLLRAIQEREVQR--VGSNQTISVDVRLIAATHRDLA------AEVNAGRFRQDLYYRLNV-VAIEVPS 311 (441)
T ss_pred ccccCCHHHHHHHHHHHccCcEEe--CCCCceeeeceEEEEeCCCCHH------HHHHcCCchHHHHHHhcc-ceecCCC
Confidence 999999999999999999988654 5555667788899999875431 112223577888888863 2332233
Q ss_pred hHHHHHHHHhhcchhHHHHHHHH-HHhh--cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHH
Q psy17703 497 SEQFDARLARHLDITVLRDYIAY-AQEH--LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKM 573 (720)
Q Consensus 497 ~~~~d~~la~~i~~~~l~~~i~~-ar~~--~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l 573 (720)
-.++.+.+. .+...|+.. +++. ..+.+++++.+.|..+ +||.+.|+|+.+++.+-..
T Consensus 312 LreR~~Di~-----~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~------------~wpgN~reL~~~~~~~~~~--- 371 (441)
T PRK10365 312 LRQRREDIP-----LLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY------------DWPGNIRELENAVERAVVL--- 371 (441)
T ss_pred hhhcchhHH-----HHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC------------CCCCHHHHHHHHHHHHHHh---
Confidence 222221111 123333332 3322 1246899999888744 5788889999998865443
Q ss_pred cCCCCCCHHhHHHH
Q psy17703 574 RYSETVEVQDVDEA 587 (720)
Q Consensus 574 ~~~~~V~~~Dv~~A 587 (720)
.....++.+|+...
T Consensus 372 ~~~~~i~~~~l~~~ 385 (441)
T PRK10365 372 LTGEYISERELPLA 385 (441)
T ss_pred CCCCccchHhCchh
Confidence 22346777777544
No 111
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=1.6e-08 Score=112.72 Aligned_cols=186 Identities=14% Similarity=0.164 Sum_probs=106.9
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCCCCccc----cC-----------CccccccccceeecC-ccccceeeeccee-eecCC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVPRSQYT----SG-----------KGSSAVGLTAYITKD-PETRQMVLQTGAL-VLADS 410 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~pr~~~~----~g-----------~~ss~~glta~~~~~-~~~~~~~~~~G~l-~lad~ 410 (720)
+||+||||||||++|+.+++.+...... ++ .......+.++.... ...++..-..... .....
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~ 122 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKY 122 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCC
Confidence 7999999999999999999977532110 01 000111111110000 0000000000000 01123
Q ss_pred ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703 411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF 490 (720)
Q Consensus 411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~ 490 (720)
.|++|||++.|+.+.+++|+..||+- +..+.+|.++|... .++++++||+. +|
T Consensus 123 KV~IIDEah~Ls~~A~NALLKtLEEP-------------p~~viFILaTte~~-------------kI~~TI~SRCq-~~ 175 (484)
T PRK14956 123 KVYIIDEVHMLTDQSFNALLKTLEEP-------------PAHIVFILATTEFH-------------KIPETILSRCQ-DF 175 (484)
T ss_pred EEEEEechhhcCHHHHHHHHHHhhcC-------------CCceEEEeecCChh-------------hccHHHHhhhh-ee
Confidence 49999999999999999999999863 23345555555322 58999999995 67
Q ss_pred EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703 491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH 570 (720)
Q Consensus 491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~ 570 (720)
.+...+.++.. +|+.+.-....-.+++++...|+..- ..++|...+++.-+-+.
T Consensus 176 ~f~~ls~~~i~-------------~~L~~i~~~Egi~~e~eAL~~Ia~~S-------------~Gd~RdAL~lLeq~i~~ 229 (484)
T PRK14956 176 IFKKVPLSVLQ-------------DYSEKLCKIENVQYDQEGLFWIAKKG-------------DGSVRDMLSFMEQAIVF 229 (484)
T ss_pred eecCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CChHHHHHHHHHHHHHh
Confidence 77777655433 33333322234567888888887431 12357777776543332
Q ss_pred HHHcCCCCCCHHhHHHHHHH
Q psy17703 571 AKMRYSETVEVQDVDEAWRL 590 (720)
Q Consensus 571 A~l~~~~~V~~~Dv~~Ai~l 590 (720)
....++.+++.+++.+
T Consensus 230 ----~~~~it~~~V~~~lg~ 245 (484)
T PRK14956 230 ----TDSKLTGVKIRKMIGY 245 (484)
T ss_pred ----CCCCcCHHHHHHHhCC
Confidence 1246888888776543
No 112
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=1.8e-08 Score=115.31 Aligned_cols=187 Identities=20% Similarity=0.174 Sum_probs=107.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCcccc---------------CCccccccccceeecCc-cccceeeec-ceeeec
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTS---------------GKGSSAVGLTAYITKDP-ETRQMVLQT-GALVLA 408 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~---------------g~~ss~~glta~~~~~~-~~~~~~~~~-G~l~la 408 (720)
..+||+||||+|||++|+.+++.+....-.. |.......+.++..... ..++..... -.-...
T Consensus 38 HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~g 117 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQG 117 (702)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcC
Confidence 3569999999999999999999764311000 11111111111100000 000000000 000112
Q ss_pred CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703 409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL 488 (720)
Q Consensus 409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl 488 (720)
...|++|||++.|+...+++|+..||+- +..+.+|.++|... .++++++||+.
T Consensus 118 k~KV~IIDEVh~LS~~A~NALLKtLEEP-------------P~~v~FILaTtd~~-------------kIp~TIlSRCq- 170 (702)
T PRK14960 118 RFKVYLIDEVHMLSTHSFNALLKTLEEP-------------PEHVKFLFATTDPQ-------------KLPITVISRCL- 170 (702)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhcC-------------CCCcEEEEEECChH-------------hhhHHHHHhhh-
Confidence 3469999999999999999999999862 22334444444221 47889999994
Q ss_pred EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE 568 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~ 568 (720)
+|.+..++.++.. +++...-..-...+++++.+.|+... ..+.|.+.+++.-
T Consensus 171 ~feFkpLs~eEI~-------------k~L~~Il~kEgI~id~eAL~~IA~~S-------------~GdLRdALnLLDQ-- 222 (702)
T PRK14960 171 QFTLRPLAVDEIT-------------KHLGAILEKEQIAADQDAIWQIAESA-------------QGSLRDALSLTDQ-- 222 (702)
T ss_pred eeeccCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHH--
Confidence 7888877665443 33333222235568888888887431 1245777776542
Q ss_pred HHHHHcCCCCCCHHhHHHHHH
Q psy17703 569 AHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 569 A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
+.+. +...|+.+|+...+.
T Consensus 223 aIay--g~g~IT~edV~~lLG 241 (702)
T PRK14960 223 AIAY--GQGAVHHQDVKEMLG 241 (702)
T ss_pred HHHh--cCCCcCHHHHHHHhc
Confidence 2332 457899999988644
No 113
>KOG0730|consensus
Probab=98.95 E-value=1.5e-09 Score=121.68 Aligned_cols=186 Identities=22% Similarity=0.243 Sum_probs=104.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCC-ccccCCc--cccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRS-QYTSGKG--SSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g~~--ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
--|||+||||||||++++++|+.+... ++..|-+ +.-+|..-..+++-+ -++-. .+ ..|+|+||+|.+.
T Consensus 469 kGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF-----~kAR~--~a-P~IiFfDEiDsi~ 540 (693)
T KOG0730|consen 469 KGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVF-----RKARQ--VA-PCIIFFDEIDALA 540 (693)
T ss_pred ceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHH-----HHHhh--cC-CeEEehhhHHhHh
Confidence 379999999999999999999876432 1122211 111111111111100 01111 22 3799999999875
Q ss_pred hH-----------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeE
Q psy17703 423 DT-----------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLI 489 (720)
Q Consensus 423 ~~-----------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli 489 (720)
.+ ..+.|+.-| +|+... .++.|+||+|.+. .|++||++ |||-+
T Consensus 541 ~~R~g~~~~v~~RVlsqLLtEm---------DG~e~~--k~V~ViAATNRpd-------------~ID~ALlRPGRlD~i 596 (693)
T KOG0730|consen 541 GSRGGSSSGVTDRVLSQLLTEM---------DGLEAL--KNVLVIAATNRPD-------------MIDPALLRPGRLDRI 596 (693)
T ss_pred hccCCCccchHHHHHHHHHHHc---------cccccc--CcEEEEeccCChh-------------hcCHHHcCCccccee
Confidence 43 234455555 333322 4689999999776 69999999 99988
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHH-HHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEE-ASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE 568 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~e-a~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~ 568 (720)
+.++.|+.+...+++..+ +++ .| ++++ ..+.|+.. ...+ |-+.+..+.+-|.
T Consensus 597 iyVplPD~~aR~~Ilk~~------------~kk--mp-~~~~vdl~~La~~----------T~g~--SGAel~~lCq~A~ 649 (693)
T KOG0730|consen 597 IYVPLPDLEARLEILKQC------------AKK--MP-FSEDVDLEELAQA----------TEGY--SGAEIVAVCQEAA 649 (693)
T ss_pred EeecCccHHHHHHHHHHH------------Hhc--CC-CCccccHHHHHHH----------hccC--ChHHHHHHHHHHH
Confidence 888777665554444422 222 11 2222 11222211 1112 2267777777665
Q ss_pred HHHHHc--CCCCCCHHhHHHHHHH
Q psy17703 569 AHAKMR--YSETVEVQDVDEAWRL 590 (720)
Q Consensus 569 A~A~l~--~~~~V~~~Dv~~Ai~l 590 (720)
-.|--+ ....|+.+|.++|+.-
T Consensus 650 ~~a~~e~i~a~~i~~~hf~~al~~ 673 (693)
T KOG0730|consen 650 LLALRESIEATEITWQHFEEALKA 673 (693)
T ss_pred HHHHHHhcccccccHHHHHHHHHh
Confidence 555333 2456677787777653
No 114
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.95 E-value=1.4e-08 Score=116.99 Aligned_cols=187 Identities=20% Similarity=0.201 Sum_probs=108.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCccccCC---------------ccccccccceeecC-ccccceeeecc-eeeecC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGK---------------GSSAVGLTAYITKD-PETRQMVLQTG-ALVLAD 409 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~---------------~ss~~glta~~~~~-~~~~~~~~~~G-~l~lad 409 (720)
.+||+|+||+|||++++.+++.+.......+. ......+.++.... ...++...... .-..+.
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk 119 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGK 119 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCC
Confidence 47999999999999999999976321111110 00000010000000 00000000000 001234
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
..|++|||++.|+....++|+..||+. +..+.+|.++|... +++++++||| +.
T Consensus 120 ~KVIIIDEad~Ls~~A~NALLKtLEEP-------------p~~v~fILaTtd~~-------------kL~~TIrSRC-~~ 172 (709)
T PRK08691 120 YKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PEHVKFILATTDPH-------------KVPVTVLSRC-LQ 172 (709)
T ss_pred cEEEEEECccccCHHHHHHHHHHHHhC-------------CCCcEEEEEeCCcc-------------ccchHHHHHH-hh
Confidence 579999999999999999999999862 23345555555222 4889999999 46
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
|.+..+..++.. +++...-..-...+++++.+.|.+.. ..+.|.+.+++.-+.+
T Consensus 173 f~f~~Ls~eeI~-------------~~L~~Il~kEgi~id~eAL~~Ia~~A-------------~GslRdAlnLLDqaia 226 (709)
T PRK08691 173 FVLRNMTAQQVA-------------DHLAHVLDSEKIAYEPPALQLLGRAA-------------AGSMRDALSLLDQAIA 226 (709)
T ss_pred hhcCCCCHHHHH-------------HHHHHHHHHcCCCcCHHHHHHHHHHh-------------CCCHHHHHHHHHHHHH
Confidence 777766655433 33333322334567888888887442 1345777777754433
Q ss_pred HHHHcCCCCCCHHhHHHHHHH
Q psy17703 570 HAKMRYSETVEVQDVDEAWRL 590 (720)
Q Consensus 570 ~A~l~~~~~V~~~Dv~~Ai~l 590 (720)
. +...|+.+++...+..
T Consensus 227 ~----g~g~It~e~V~~lLG~ 243 (709)
T PRK08691 227 L----GSGKVAENDVRQMIGA 243 (709)
T ss_pred h----cCCCcCHHHHHHHHcc
Confidence 2 3467898888887553
No 115
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.95 E-value=6.6e-09 Score=122.37 Aligned_cols=185 Identities=19% Similarity=0.245 Sum_probs=107.8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeec-cee-eecCCceeeccccccCCh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQT-GAL-VLADSGVCCIDEFDKMSD 423 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~-G~l-~lad~gI~~IDEidkm~~ 423 (720)
.|++|+||||||||++++++++....... ....+ ..+. .+ ..+..-.. ..+ .....+++||||++.++.
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~-~lna~-~~~i-----~d--ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFS-SLNAV-LAGV-----KD--LRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcce-eehhh-hhhh-----HH--HHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 49999999999999999999986642211 10000 0000 00 00000000 000 012356999999999999
Q ss_pred HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHH
Q psy17703 424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDAR 503 (720)
Q Consensus 424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~ 503 (720)
..+++|+..||++.+ .+++++++... ..++++++||+. +|.+.+++.++....
T Consensus 124 ~qQdaLL~~lE~g~I---------------iLI~aTTenp~-----------~~l~~aL~SR~~-v~~l~pLs~edi~~I 176 (725)
T PRK13341 124 AQQDALLPWVENGTI---------------TLIGATTENPY-----------FEVNKALVSRSR-LFRLKSLSDEDLHQL 176 (725)
T ss_pred HHHHHHHHHhcCceE---------------EEEEecCCChH-----------hhhhhHhhcccc-ceecCCCCHHHHHHH
Confidence 999999999986543 34554432210 147799999985 677777776655444
Q ss_pred HHhhcchhHHHHHHHH-HHh--hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCC--CC
Q psy17703 504 LARHLDITVLRDYIAY-AQE--HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYS--ET 578 (720)
Q Consensus 504 la~~i~~~~l~~~i~~-ar~--~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~--~~ 578 (720)
+.+ ++.. .+. .....+++++.+.|.++. +...|++..++..+...+..... ..
T Consensus 177 L~~---------~l~~~~~~~g~~~v~I~deaL~~La~~s-------------~GD~R~lln~Le~a~~~~~~~~~~~i~ 234 (725)
T PRK13341 177 LKR---------ALQDKERGYGDRKVDLEPEAEKHLVDVA-------------NGDARSLLNALELAVESTPPDEDGLID 234 (725)
T ss_pred HHH---------HHHHHHhhcCCcccCCCHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHhcccCCCCcee
Confidence 332 2211 110 124578999998887531 23458898888866543322221 22
Q ss_pred CCHHhHHHHH
Q psy17703 579 VEVQDVDEAW 588 (720)
Q Consensus 579 V~~~Dv~~Ai 588 (720)
++.+++++++
T Consensus 235 It~~~~~e~l 244 (725)
T PRK13341 235 ITLAIAEESI 244 (725)
T ss_pred ccHHHHHHHH
Confidence 6666666664
No 116
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.95 E-value=3.8e-09 Score=130.08 Aligned_cols=135 Identities=9% Similarity=0.131 Sum_probs=83.5
Q ss_pred CceeeccccccCChHH-----HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc
Q psy17703 410 SGVCCIDEFDKMSDTT-----RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS 484 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~-----~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls 484 (720)
..|++|||||.+...+ ...|+..|+... ...-..++.||||||.+. .|+|||++
T Consensus 1733 PCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~--------~~~s~~~VIVIAATNRPD-------------~LDPALLR 1791 (2281)
T CHL00206 1733 PCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDC--------ERCSTRNILVIASTHIPQ-------------KVDPALIA 1791 (2281)
T ss_pred CeEEEEEchhhcCCCccceehHHHHHHHhcccc--------ccCCCCCEEEEEeCCCcc-------------cCCHhHcC
Confidence 5799999999998653 234444453210 001124578999999776 69999999
Q ss_pred --cceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHH
Q psy17703 485 --RFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLE 561 (720)
Q Consensus 485 --RFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le 561 (720)
|||-.+.+..|+...+.+++.. +.+.+. ...+.. ...+.++ .. ....|.+.|.
T Consensus 1792 PGRFDR~I~Ir~Pd~p~R~kiL~I----------Ll~tkg~~L~~~~--vdl~~LA----------~~--T~GfSGADLa 1847 (2281)
T CHL00206 1792 PNKLNTCIKIRRLLIPQQRKHFFT----------LSYTRGFHLEKKM--FHTNGFG----------SI--TMGSNARDLV 1847 (2281)
T ss_pred CCCCCeEEEeCCCCchhHHHHHHH----------HHhhcCCCCCccc--ccHHHHH----------Hh--CCCCCHHHHH
Confidence 9998888876655444433321 011111 011110 0011111 11 1224569999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHhHHHHHH
Q psy17703 562 SLIRLSEAHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 562 ~lirla~A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
+|+.-|.-.|.-+.+..|+.+|++.|+.
T Consensus 1848 nLvNEAaliAirq~ks~Id~~~I~~Al~ 1875 (2281)
T CHL00206 1848 ALTNEALSISITQKKSIIDTNTIRSALH 1875 (2281)
T ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 9999998888889999999999999965
No 117
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=1.8e-08 Score=114.89 Aligned_cols=187 Identities=14% Similarity=0.144 Sum_probs=106.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCccccCC---------------ccccccccceeecC-ccccceeeecc-eeeecC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGK---------------GSSAVGLTAYITKD-PETRQMVLQTG-ALVLAD 409 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~---------------~ss~~glta~~~~~-~~~~~~~~~~G-~l~lad 409 (720)
.+||+||||+|||++++.+++.+.......+. ......+.++.... ...++..-... .-..++
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~ 119 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGR 119 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCC
Confidence 37899999999999999999966431110000 00111111100000 00000000000 002235
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
..|++|||+++|+.+.+++|+..||+. |..+.+|.+++-.. .++++++||+ .+
T Consensus 120 ~kViIIDEa~~ls~~a~naLLK~LEep-------------p~~v~fIL~Ttd~~-------------kil~tI~SRc-~~ 172 (546)
T PRK14957 120 YKVYLIDEVHMLSKQSFNALLKTLEEP-------------PEYVKFILATTDYH-------------KIPVTILSRC-IQ 172 (546)
T ss_pred cEEEEEechhhccHHHHHHHHHHHhcC-------------CCCceEEEEECChh-------------hhhhhHHHhe-ee
Confidence 679999999999999999999999963 22333444443111 4778899999 58
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
|.+..++.++.. +++...-......+++++.+.++... ..+.|.+..++.-+-+
T Consensus 173 ~~f~~Ls~~eI~-------------~~L~~il~~egi~~e~~Al~~Ia~~s-------------~GdlR~alnlLek~i~ 226 (546)
T PRK14957 173 LHLKHISQADIK-------------DQLKIILAKENINSDEQSLEYIAYHA-------------KGSLRDALSLLDQAIS 226 (546)
T ss_pred EEeCCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHHH
Confidence 888877766533 22322222234567888888777442 1234766666654333
Q ss_pred HHHHcCCCCCCHHhHHHHHHH
Q psy17703 570 HAKMRYSETVEVQDVDEAWRL 590 (720)
Q Consensus 570 ~A~l~~~~~V~~~Dv~~Ai~l 590 (720)
. .+ +.++.+++.+++..
T Consensus 227 ~---~~-~~It~~~V~~~l~~ 243 (546)
T PRK14957 227 F---CG-GELKQAQIKQMLGI 243 (546)
T ss_pred h---cc-CCCCHHHHHHHHcc
Confidence 2 22 67999999887553
No 118
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=1.6e-08 Score=115.14 Aligned_cols=182 Identities=20% Similarity=0.189 Sum_probs=106.9
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCCCCcccc---------------CCccccccccceeecCc-cccce----eeecceeee
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVPRSQYTS---------------GKGSSAVGLTAYITKDP-ETRQM----VLQTGALVL 407 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~pr~~~~~---------------g~~ss~~glta~~~~~~-~~~~~----~~~~G~l~l 407 (720)
+||+||||||||++++.+++.+......+ |.......+.++..... ..++. ...| ..
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p---~~ 117 (509)
T PRK14958 41 YLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAP---TK 117 (509)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhcc---cc
Confidence 69999999999999999999774321111 11111111111100000 00000 0111 11
Q ss_pred cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703 408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD 487 (720)
Q Consensus 408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd 487 (720)
+...|++|||++.|+.+..++|+..||+- |..+.+|.++|... +++++++||+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEep-------------p~~~~fIlattd~~-------------kl~~tI~SRc- 170 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEP-------------PSHVKFILATTDHH-------------KLPVTVLSRC- 170 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhcc-------------CCCeEEEEEECChH-------------hchHHHHHHh-
Confidence 23469999999999999999999999862 33444555554221 4788899999
Q ss_pred eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH
Q psy17703 488 LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567 (720)
Q Consensus 488 li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla 567 (720)
.+|.+...+.++. .+++...-+.....+++++.+.+.+.. ..++|.+.+++.-+
T Consensus 171 ~~~~f~~l~~~~i-------------~~~l~~il~~egi~~~~~al~~ia~~s-------------~GslR~al~lLdq~ 224 (509)
T PRK14958 171 LQFHLAQLPPLQI-------------AAHCQHLLKEENVEFENAALDLLARAA-------------NGSVRDALSLLDQS 224 (509)
T ss_pred hhhhcCCCCHHHH-------------HHHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCcHHHHHHHHHHH
Confidence 4777776665543 223322222234557788877776432 13457777776433
Q ss_pred HHHHHHcCCCCCCHHhHHHHHH
Q psy17703 568 EAHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 568 ~A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
. +. +...|+.+|+.+.+.
T Consensus 225 i--a~--~~~~It~~~V~~~lg 242 (509)
T PRK14958 225 I--AY--GNGKVLIADVKTMLG 242 (509)
T ss_pred H--hc--CCCCcCHHHHHHHHC
Confidence 2 22 356899999988754
No 119
>KOG0742|consensus
Probab=98.93 E-value=1.1e-08 Score=108.50 Aligned_cols=131 Identities=24% Similarity=0.249 Sum_probs=89.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceee-cCccccceeeecceeeecCCc-eeecccccc---
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYIT-KDPETRQMVLQTGALVLADSG-VCCIDEFDK--- 420 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~-~~~~~~~~~~~~G~l~lad~g-I~~IDEidk--- 420 (720)
-|||++||||||||++++-+++.+. ..|.-.++.+.+.+.+-.+ +-...-.|... +..| ++||||.|.
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SG-lDYA~mTGGDVAPlG~qaVTkiH~lFDWakk------S~rGLllFIDEADAFLc 457 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHSG-LDYAIMTGGDVAPLGAQAVTKIHKLFDWAKK------SRRGLLLFIDEADAFLC 457 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhcC-CceehhcCCCccccchHHHHHHHHHHHHHhh------cccceEEEehhhHHHHH
Confidence 3999999999999999999998764 4455555555555543211 11111223322 2344 689999875
Q ss_pred ------CChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecC
Q psy17703 421 ------MSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLD 494 (720)
Q Consensus 421 ------m~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d 494 (720)
|+++.+.+|...+= +.|. -.-++.++-|+|.++ +|+.+.-+|||-++.++-
T Consensus 458 eRnktymSEaqRsaLNAlLf-------RTGd---qSrdivLvlAtNrpg-------------dlDsAV~DRide~veFpL 514 (630)
T KOG0742|consen 458 ERNKTYMSEAQRSALNALLF-------RTGD---QSRDIVLVLATNRPG-------------DLDSAVNDRIDEVVEFPL 514 (630)
T ss_pred HhchhhhcHHHHHHHHHHHH-------Hhcc---cccceEEEeccCCcc-------------chhHHHHhhhhheeecCC
Confidence 77888888776652 1121 123577888889766 688999999999999999
Q ss_pred CChHHHHHHHHh
Q psy17703 495 PQSEQFDARLAR 506 (720)
Q Consensus 495 ~~~~~~d~~la~ 506 (720)
|..+++.+.+..
T Consensus 515 PGeEERfkll~l 526 (630)
T KOG0742|consen 515 PGEEERFKLLNL 526 (630)
T ss_pred CChHHHHHHHHH
Confidence 988887766553
No 120
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.93 E-value=7.3e-09 Score=116.92 Aligned_cols=139 Identities=16% Similarity=0.198 Sum_probs=80.1
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCC-ccccccccceeecCccccce------ee-ecceee-ecCCceeecc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGK-GSSAVGLTAYITKDPETRQM------VL-QTGALV-LADSGVCCID 416 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~-~ss~~glta~~~~~~~~~~~------~~-~~G~l~-lad~gI~~ID 416 (720)
.++||+||||||||++++++++.+....+.... ............-....++. .+ .+.... .....|+|||
T Consensus 217 ~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfID 296 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFD 296 (512)
T ss_pred cceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEe
Confidence 479999999999999999999987543322000 00000000000000000000 00 000000 0124599999
Q ss_pred ccccCChH--------H----HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc
Q psy17703 417 EFDKMSDT--------T----RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS 484 (720)
Q Consensus 417 Eidkm~~~--------~----~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls 484 (720)
|+|.+... . ...|+..|+. ... ..++.+|+|+|... .|+++|++
T Consensus 297 EiD~L~~~R~~~~s~d~e~~il~~LL~~LDg---------l~~--~~~ViVI~ATN~~d-------------~LDpALlR 352 (512)
T TIGR03689 297 EMDSIFRTRGSGVSSDVETTVVPQLLSELDG---------VES--LDNVIVIGASNRED-------------MIDPAILR 352 (512)
T ss_pred hhhhhhcccCCCccchHHHHHHHHHHHHhcc---------ccc--CCceEEEeccCChh-------------hCCHhhcC
Confidence 99987321 1 1234444431 111 13578999999765 58999998
Q ss_pred --cceeEEEecCCChHHHHHHHHhhc
Q psy17703 485 --RFDLIFLLLDPQSEQFDARLARHL 508 (720)
Q Consensus 485 --RFdli~~l~d~~~~~~d~~la~~i 508 (720)
|||..+.+..|..+.....+..++
T Consensus 353 pGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 353 PGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ccccceEEEeCCCCHHHHHHHHHHHh
Confidence 999999999998888777776665
No 121
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.92 E-value=2.6e-08 Score=104.41 Aligned_cols=146 Identities=26% Similarity=0.249 Sum_probs=104.7
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
.|++||||.+-++-+..+.|+.+||.---- .++.|+|.-...-.+.. +..-..+|..||+|. ||
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~aP--------------Iii~AtNRG~~kiRGTd-~~sPhGIP~DlLDRl-lI 355 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESELAP--------------IIILATNRGMTKIRGTD-IESPHGIPLDLLDRL-LI 355 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcccCc--------------EEEEEcCCceeeecccC-CcCCCCCCHhhhhhe-eE
Confidence 489999999999999999999999865322 35667775433322221 333457999999999 57
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
+...+.+.++..+.|... |+. -.-.++++|.+.|.+.- ...|-|....|+.-|.-
T Consensus 356 I~t~py~~~EireIi~iR------------a~e-e~i~l~~~Ale~L~~ig------------~etSLRYa~qLL~pa~i 410 (450)
T COG1224 356 ISTRPYSREEIREIIRIR------------AKE-EDIELSDDALEYLTDIG------------EETSLRYAVQLLTPASI 410 (450)
T ss_pred EecCCCCHHHHHHHHHHh------------hhh-hccccCHHHHHHHHhhc------------hhhhHHHHHHhccHHHH
Confidence 777777666665555421 222 25568999998887431 12234878888888999
Q ss_pred HHHHcCCCCCCHHhHHHHHHHHHHHHH
Q psy17703 570 HAKMRYSETVEVQDVDEAWRLHREALK 596 (720)
Q Consensus 570 ~A~l~~~~~V~~~Dv~~Ai~l~~~~l~ 596 (720)
.|+.+++..|..+|+++|.+||-+.-+
T Consensus 411 iA~~rg~~~V~~~dVe~a~~lF~D~kr 437 (450)
T COG1224 411 IAKRRGSKRVEVEDVERAKELFLDVKR 437 (450)
T ss_pred HHHHhCCCeeehhHHHHHHHHHhhHHH
Confidence 999999999999999999999865443
No 122
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.90 E-value=8.5e-10 Score=102.32 Aligned_cols=116 Identities=27% Similarity=0.331 Sum_probs=72.0
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccc--cccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSS--AVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT 424 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss--~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~ 424 (720)
|||+||||||||++++.+++.+...++ .++.... ..+...... ..+..++.. .+...|++|||+|.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i-----~~~~~~~~~--~~~~~vl~iDe~d~l~~~ 73 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKI-----RDFFKKAKK--SAKPCVLFIDEIDKLFPK 73 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHH-----HHHHHHHHH--TSTSEEEEEETGGGTSHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccc-----ccccccccc--cccceeeeeccchhcccc
Confidence 799999999999999999998753221 1111100 000000000 001111100 002589999999999887
Q ss_pred H-----------HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhh-ccceeEEEe
Q psy17703 425 T-----------RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLL-SRFDLIFLL 492 (720)
Q Consensus 425 ~-----------~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLl-sRFdli~~l 492 (720)
. ...|...|+...-. +.++.+|+++|... .++++++ +||+..+.+
T Consensus 74 ~~~~~~~~~~~~~~~L~~~l~~~~~~----------~~~~~vI~ttn~~~-------------~i~~~l~~~rf~~~i~~ 130 (132)
T PF00004_consen 74 SQPSSSSFEQRLLNQLLSLLDNPSSK----------NSRVIVIATTNSPD-------------KIDPALLRSRFDRRIEF 130 (132)
T ss_dssp CSTSSSHHHHHHHHHHHHHHHTTTTT----------SSSEEEEEEESSGG-------------GSCHHHHSTTSEEEEEE
T ss_pred cccccccccccccceeeecccccccc----------cccceeEEeeCChh-------------hCCHhHHhCCCcEEEEc
Confidence 6 56777777643211 35689999999643 5899999 999988876
Q ss_pred c
Q psy17703 493 L 493 (720)
Q Consensus 493 ~ 493 (720)
.
T Consensus 131 ~ 131 (132)
T PF00004_consen 131 P 131 (132)
T ss_dssp -
T ss_pred C
Confidence 4
No 123
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.89 E-value=3.7e-08 Score=111.65 Aligned_cols=190 Identities=15% Similarity=0.148 Sum_probs=110.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCcccc-CCcccccccc-------ceeec-----Cc--ccc-----ceeeec-ce
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTS-GKGSSAVGLT-------AYITK-----DP--ETR-----QMVLQT-GA 404 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~-g~~ss~~glt-------a~~~~-----~~--~~~-----~~~~~~-G~ 404 (720)
.++||+||||||||++|+.+++.+....... +......+.. ..... +. .++ +..-.. -.
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~ 123 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYK 123 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhc
Confidence 4799999999999999999999775321111 0000000000 00000 00 000 000000 00
Q ss_pred eeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc
Q psy17703 405 LVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS 484 (720)
Q Consensus 405 l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls 484 (720)
-..++..|++|||++.|+...+++|+..||+. +..+.+|.++|... .+++++.|
T Consensus 124 P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep-------------p~~~vfI~aTte~~-------------kI~~tI~S 177 (507)
T PRK06645 124 PLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP-------------PPHIIFIFATTEVQ-------------KIPATIIS 177 (507)
T ss_pred cccCCcEEEEEEChhhcCHHHHHHHHHHHhhc-------------CCCEEEEEEeCChH-------------HhhHHHHh
Confidence 12345779999999999999999999999852 33455555554221 48899999
Q ss_pred cceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHH
Q psy17703 485 RFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLI 564 (720)
Q Consensus 485 RFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~li 564 (720)
|+ ..|.+..++.++.. +++.+.-+.-...+++++.+.|.... ..+.|.+.+++
T Consensus 178 Rc-~~~ef~~ls~~el~-------------~~L~~i~~~egi~ie~eAL~~Ia~~s-------------~GslR~al~~L 230 (507)
T PRK06645 178 RC-QRYDLRRLSFEEIF-------------KLLEYITKQENLKTDIEALRIIAYKS-------------EGSARDAVSIL 230 (507)
T ss_pred cc-eEEEccCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHH
Confidence 99 47778777665433 33333322335567888888876431 13458777777
Q ss_pred HHHHHHHHHcCCCCCCHHhHHHHHH
Q psy17703 565 RLSEAHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 565 rla~A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
.-+.+.+.-. ...||.+|+.+.+.
T Consensus 231 dkai~~~~~~-~~~It~~~V~~llg 254 (507)
T PRK06645 231 DQAASMSAKS-DNIISPQVINQMLG 254 (507)
T ss_pred HHHHHhhccC-CCCcCHHHHHHHHC
Confidence 6544443211 23688888887644
No 124
>KOG0745|consensus
Probab=98.88 E-value=7.4e-09 Score=110.68 Aligned_cols=117 Identities=16% Similarity=0.219 Sum_probs=74.5
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCC-CCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVP-RSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~p-r~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
...||||+||+|+|||.|++.+|+.+. +....+.+.-+.+|..+--+..-...-..--.+.+..|..||+||||+||+.
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~ 304 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKIT 304 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhc
Confidence 457999999999999999999999883 2333344444444432211100000111112345667889999999999986
Q ss_pred h--------------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEeccc
Q psy17703 423 D--------------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAAN 460 (720)
Q Consensus 423 ~--------------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaN 460 (720)
. -.|.+|+..+|--.|.+.+.|.....+.+...|-|+|
T Consensus 305 ~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtn 356 (564)
T KOG0745|consen 305 KKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTN 356 (564)
T ss_pred ccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccc
Confidence 2 3588999999988888865555444444444444444
No 125
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.88 E-value=7.2e-09 Score=125.11 Aligned_cols=186 Identities=15% Similarity=0.160 Sum_probs=106.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCccccccccceeecCccccceeeecc----eeeecCCceeecccc
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTAYITKDPETRQMVLQTG----ALVLADSGVCCIDEF 418 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta~~~~~~~~~~~~~~~G----~l~lad~gI~~IDEi 418 (720)
++||+||||||||.+++++++.+.+. ++..................+....-..+.| ++.....++++|||+
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEi 679 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEV 679 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeeh
Confidence 68999999999999999999876421 1111110000000000000000000000011 112224589999999
Q ss_pred ccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCC----CC--ccc------ccccCCChhhhccc
Q psy17703 419 DKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWN----TS--KTI------IDNIRLPHTLLSRF 486 (720)
Q Consensus 419 dkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~----~~--~~~------~~~~~l~~aLlsRF 486 (720)
++++++.++.|+++|+++.++-. .|....+ .++.+|.|+|-....|. .. ..+ ...-.+.|+|++|+
T Consensus 680 eka~~~v~~~Ll~ile~g~l~d~-~gr~vd~-rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRl 757 (857)
T PRK10865 680 EKAHPDVFNILLQVLDDGRLTDG-QGRTVDF-RNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRI 757 (857)
T ss_pred hhCCHHHHHHHHHHHhhCceecC-CceEEee-cccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhC
Confidence 99999999999999999988742 3333333 24678999996322111 00 000 11225899999999
Q ss_pred eeEEEecCCChHHHHHHHHhhcchhHHHHHHH-HHHhhcCCcchHHHHHHHHHH
Q psy17703 487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIA-YAQEHLSPTLSEEASQRLIQT 539 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~-~ar~~~~p~ls~ea~~~l~~~ 539 (720)
|.++.+.++..++....+...+ .+... ..+..+...+++++.+.|.++
T Consensus 758 d~iivF~PL~~edl~~Iv~~~L-----~~l~~rl~~~gi~l~is~~al~~L~~~ 806 (857)
T PRK10865 758 DEVVVFHPLGEQHIASIAQIQL-----QRLYKRLEERGYEIHISDEALKLLSEN 806 (857)
T ss_pred CeeEecCCCCHHHHHHHHHHHH-----HHHHHHHHhCCCcCcCCHHHHHHHHHc
Confidence 9899888887765544333222 11111 122345667899999988753
No 126
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.84 E-value=1.5e-08 Score=119.06 Aligned_cols=185 Identities=24% Similarity=0.257 Sum_probs=110.7
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCc--cccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKG--SSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD 423 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~--ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~ 423 (720)
++||+||||||||++++++++.+....+ .++.. ....+..+..+++.. ..+ ......|+||||+|.+..
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f-----~~a---~~~~P~IifIDEiD~l~~ 258 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMF-----EQA---KKAAPCIIFIDEIDAVGR 258 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHH-----HHH---HhcCCcEEEehhHhhhhh
Confidence 5999999999999999999997754322 11111 001111111111100 000 011346999999999732
Q ss_pred H--------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cce
Q psy17703 424 T--------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFD 487 (720)
Q Consensus 424 ~--------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFd 487 (720)
. ..+.|+..|+.. .-+.++.+|||+|+.. .|++++++ |||
T Consensus 259 ~r~~~~~g~~~~~~~~ln~lL~~mdg~-----------~~~~~vivIaaTN~p~-------------~lD~Al~RpgRfd 314 (644)
T PRK10733 259 QRGAGLGGGHDEREQTLNQMLVEMDGF-----------EGNEGIIVIAATNRPD-------------VLDPALLRPGRFD 314 (644)
T ss_pred ccCCCCCCCchHHHHHHHHHHHhhhcc-----------cCCCCeeEEEecCChh-------------hcCHHHhCCcccc
Confidence 1 122333333311 1134688999999775 58899997 999
Q ss_pred eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH
Q psy17703 488 LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567 (720)
Q Consensus 488 li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla 567 (720)
..+.+..|..+++.+.+..|+.. ..+.+.+.- ..+. ......|.+.+..+++-|
T Consensus 315 r~i~v~~Pd~~~R~~Il~~~~~~-----------~~l~~~~d~---~~la------------~~t~G~sgadl~~l~~eA 368 (644)
T PRK10733 315 RQVVVGLPDVRGREQILKVHMRR-----------VPLAPDIDA---AIIA------------RGTPGFSGADLANLVNEA 368 (644)
T ss_pred eEEEcCCCCHHHHHHHHHHHhhc-----------CCCCCcCCH---HHHH------------hhCCCCCHHHHHHHHHHH
Confidence 99988888777665555433210 011121111 1111 011235679999999988
Q ss_pred HHHHHHcCCCCCCHHhHHHHHH
Q psy17703 568 EAHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 568 ~A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
.-.|.-+.+..++.+|+++|+.
T Consensus 369 a~~a~r~~~~~i~~~d~~~a~~ 390 (644)
T PRK10733 369 ALFAARGNKRVVSMVEFEKAKD 390 (644)
T ss_pred HHHHHHcCCCcccHHHHHHHHH
Confidence 8888888888999999999875
No 127
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.84 E-value=6.2e-09 Score=97.25 Aligned_cols=127 Identities=23% Similarity=0.207 Sum_probs=79.5
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCC----CccccCCccccccccceeecCccccc--eeeecceeeecCCceeeccc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPR----SQYTSGKGSSAVGLTAYITKDPETRQ--MVLQTGALVLADSGVCCIDE 417 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr----~~~~~g~~ss~~glta~~~~~~~~~~--~~~~~G~l~lad~gI~~IDE 417 (720)
...+++++|+||+|||++++.+++.+.. ..+........... . ...... .............+++++||
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~lilDe 92 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLV-V----AELFGHFLVRLLFELAEKAKPGVLFIDE 92 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhH-H----HHHhhhhhHhHHHHhhccCCCeEEEEeC
Confidence 4679999999999999999999987631 11111110000000 0 000000 00001122234578999999
Q ss_pred cccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEec
Q psy17703 418 FDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLL 493 (720)
Q Consensus 418 idkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~ 493 (720)
++.+.......+++.+++..... ..+.++.+++++|+... ..+++.+.+||+..+.+.
T Consensus 93 ~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~ii~~~~~~~~-----------~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 93 IDSLSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPLL-----------GDLDRALYDRLDIRIVIP 150 (151)
T ss_pred hhhhhHHHHHHHHHHHHhcCcee-------ccCCCeEEEEecCcccc-----------CCcChhHHhhhccEeecC
Confidence 99998888888888887654332 33567899999997763 247789999998666553
No 128
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=6.1e-08 Score=112.25 Aligned_cols=183 Identities=22% Similarity=0.201 Sum_probs=103.8
Q ss_pred c-EEEEcCCCCHHHHHHHHHHhhCCCCccc----cCC-----------cccccccccee-ecCccccce----eeeccee
Q psy17703 347 N-ILLCGDPGTSKSQLLSYVYDLVPRSQYT----SGK-----------GSSAVGLTAYI-TKDPETRQM----VLQTGAL 405 (720)
Q Consensus 347 ~-vLL~G~PGtGKS~ll~~va~~~pr~~~~----~g~-----------~ss~~glta~~-~~~~~~~~~----~~~~G~l 405 (720)
| +||+|+||+|||++++.+++.+...... +|. ......+.+.. .+-...++. ...+
T Consensus 39 hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p--- 115 (647)
T PRK07994 39 HAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAP--- 115 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhh---
Confidence 5 5899999999999999999977542110 010 00001111110 000000110 1111
Q ss_pred eecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcc
Q psy17703 406 VLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSR 485 (720)
Q Consensus 406 ~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsR 485 (720)
......|++|||++.|+.+.+++|+..||+- |..+.+|.++|... .|+++++||
T Consensus 116 ~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP-------------p~~v~FIL~Tt~~~-------------kLl~TI~SR 169 (647)
T PRK07994 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEHVKFLLATTDPQ-------------KLPVTILSR 169 (647)
T ss_pred hcCCCEEEEEechHhCCHHHHHHHHHHHHcC-------------CCCeEEEEecCCcc-------------ccchHHHhh
Confidence 1123459999999999999999999999963 22333444443221 488999999
Q ss_pred ceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703 486 FDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR 565 (720)
Q Consensus 486 Fdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir 565 (720)
+ ..|.+..++.++... |+...-..-...+++++.+.|.... ..++|....++.
T Consensus 170 C-~~~~f~~Ls~~ei~~-------------~L~~il~~e~i~~e~~aL~~Ia~~s-------------~Gs~R~Al~lld 222 (647)
T PRK07994 170 C-LQFHLKALDVEQIRQ-------------QLEHILQAEQIPFEPRALQLLARAA-------------DGSMRDALSLTD 222 (647)
T ss_pred h-eEeeCCCCCHHHHHH-------------HHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHH
Confidence 8 688888887665433 3322221123456777777665331 124577766654
Q ss_pred HHHHHHHHcCCCCCCHHhHHHHHH
Q psy17703 566 LSEAHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 566 la~A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
-+ .+. ....|+.+++...+.
T Consensus 223 qa--ia~--~~~~it~~~v~~~lg 242 (647)
T PRK07994 223 QA--IAS--GNGQVTTDDVSAMLG 242 (647)
T ss_pred HH--HHh--cCCCcCHHHHHHHHc
Confidence 32 322 234678888777654
No 129
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=2.3e-08 Score=114.15 Aligned_cols=123 Identities=20% Similarity=0.156 Sum_probs=76.3
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
..|++|||+|.|+...+++|+..||+- +.++.||.++|... +|+++++||| ..
T Consensus 125 ~KViIIDEah~Ls~~AaNALLKTLEEP-------------P~~v~FILaTtep~-------------kLlpTIrSRC-q~ 177 (700)
T PRK12323 125 FKVYMIDEVHMLTNHAFNAMLKTLEEP-------------PEHVKFILATTDPQ-------------KIPVTVLSRC-LQ 177 (700)
T ss_pred ceEEEEEChHhcCHHHHHHHHHhhccC-------------CCCceEEEEeCChH-------------hhhhHHHHHH-Hh
Confidence 459999999999999999999999862 23445555555222 5889999999 57
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
|.+..++.++....+. +.-......+++++.+.|...- ..++|...+++.-+.+
T Consensus 178 f~f~~ls~eei~~~L~-------------~Il~~Egi~~d~eAL~~IA~~A-------------~Gs~RdALsLLdQaia 231 (700)
T PRK12323 178 FNLKQMPPGHIVSHLD-------------AILGEEGIAHEVNALRLLAQAA-------------QGSMRDALSLTDQAIA 231 (700)
T ss_pred cccCCCChHHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHHH
Confidence 8887776654433222 1111123446677766665321 1245766666543222
Q ss_pred HHHHcCCCCCCHHhHHHHHH
Q psy17703 570 HAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 570 ~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
.....++.+++.+.+.
T Consensus 232 ----~~~~~It~~~V~~~LG 247 (700)
T PRK12323 232 ----YSAGNVSEEAVRGMLG 247 (700)
T ss_pred ----hccCCcCHHHHHHHhC
Confidence 2234677777776543
No 130
>KOG0652|consensus
Probab=98.83 E-value=1.2e-08 Score=102.41 Aligned_cols=187 Identities=22% Similarity=0.275 Sum_probs=110.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCccccCC----ccccccccceeecCccccceeeecceeeec---CCceeeccccc
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGK----GSSAVGLTAYITKDPETRQMVLQTGALVLA---DSGVCCIDEFD 419 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~----~ss~~glta~~~~~~~~~~~~~~~G~l~la---d~gI~~IDEid 419 (720)
.+|++||||||||.++|+++..... .|-..- -...+|..+..++|. +.+| ...|+||||+|
T Consensus 207 GvLmYGPPGTGKTlmARAcAaqT~a-TFLKLAgPQLVQMfIGdGAkLVRDA-----------FaLAKEkaP~IIFIDElD 274 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLMARACAAQTNA-TFLKLAGPQLVQMFIGDGAKLVRDA-----------FALAKEKAPTIIFIDELD 274 (424)
T ss_pred ceEeeCCCCCcHHHHHHHHHHhccc-hHHHhcchHHHhhhhcchHHHHHHH-----------HHHhhccCCeEEEEechh
Confidence 6999999999999999999874421 110000 112223333333332 2232 24699999998
Q ss_pred cCC-----------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703 420 KMS-----------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF 486 (720)
Q Consensus 420 km~-----------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF 486 (720)
.+. .+.|-.+++.+.|- .| .+-+.++-+|||+|... -|.|+|++ |.
T Consensus 275 AIGtKRfDSek~GDREVQRTMLELLNQL------DG--Fss~~~vKviAATNRvD-------------iLDPALlRSGRL 333 (424)
T KOG0652|consen 275 AIGTKRFDSEKAGDREVQRTMLELLNQL------DG--FSSDDRVKVIAATNRVD-------------ILDPALLRSGRL 333 (424)
T ss_pred hhccccccccccccHHHHHHHHHHHHhh------cC--CCCccceEEEeeccccc-------------ccCHHHhhcccc
Confidence 763 34577788888753 22 12356788999999765 58899987 89
Q ss_pred eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703 487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR 565 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir 565 (720)
|-.+.++-|.++.+.+++.-| +|+ ++.+.+.-+ .+. |. ...+.. -|..++.-
T Consensus 334 DRKIEfP~Pne~aRarIlQIH------------sRKMnv~~DvNfe---ELa------Rs----TddFNG--AQcKAVcV 386 (424)
T KOG0652|consen 334 DRKIEFPHPNEEARARILQIH------------SRKMNVSDDVNFE---ELA------RS----TDDFNG--AQCKAVCV 386 (424)
T ss_pred cccccCCCCChHHHHHHHHHh------------hhhcCCCCCCCHH---HHh------hc----ccccCc--hhheeeeh
Confidence 988899888776655555433 111 223322111 111 11 111111 33333333
Q ss_pred HHHHHHHHcCCCCCCHHhHHHHHHHHHH
Q psy17703 566 LSEAHAKMRYSETVEVQDVDEAWRLHRE 593 (720)
Q Consensus 566 la~A~A~l~~~~~V~~~Dv~~Ai~l~~~ 593 (720)
-|--.|.-+...+|+.+|..++|.-.+.
T Consensus 387 EAGMiALRr~atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 387 EAGMIALRRGATEVTHEDFMEGILEVQA 414 (424)
T ss_pred hhhHHHHhcccccccHHHHHHHHHHHHH
Confidence 3344555567789999999999775543
No 131
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.83 E-value=1.1e-07 Score=115.06 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=40.0
Q ss_pred CcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCC
Q psy17703 663 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP 713 (720)
Q Consensus 663 ~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p 713 (720)
.+..+||++|+.+.....++++|++..+.-++| -...+ .+|.++.++|-
T Consensus 613 ~VvllDeieka~~~v~~~Llq~le~g~~~d~~g-~~v~~-~~~i~I~Tsn~ 661 (821)
T CHL00095 613 TVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKG-RTIDF-KNTLIIMTSNL 661 (821)
T ss_pred eEEEECChhhCCHHHHHHHHHHhccCceecCCC-cEEec-CceEEEEeCCc
Confidence 567899999999999999999999999887664 34343 47888888885
No 132
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.5e-08 Score=116.02 Aligned_cols=187 Identities=24% Similarity=0.248 Sum_probs=110.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcc----ccccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGS----SAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK 420 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~s----s~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk 420 (720)
...+||+||||||||.|+++++..+..... +-.++ ..+|.+...++..... +- .....|+||||+|+
T Consensus 276 ~~giLl~GpPGtGKT~lAkava~~~~~~fi-~v~~~~l~sk~vGesek~ir~~F~~-----A~---~~~p~iiFiDEiDs 346 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLAKAVALESRSRFI-SVKGSELLSKWVGESEKNIRELFEK-----AR---KLAPSIIFIDEIDS 346 (494)
T ss_pred CCeeEEECCCCCCHHHHHHHHHhhCCCeEE-EeeCHHHhccccchHHHHHHHHHHH-----HH---cCCCcEEEEEchhh
Confidence 348999999999999999999985532221 11111 1122222211111100 00 12368999999999
Q ss_pred CChH-----------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cce
Q psy17703 421 MSDT-----------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFD 487 (720)
Q Consensus 421 m~~~-----------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFd 487 (720)
+-.. ..+.|+..|+... . ..++.+|||+|..+ .+++++++ |||
T Consensus 347 ~~~~r~~~~~~~~~r~~~~lL~~~d~~e---------~--~~~v~vi~aTN~p~-------------~ld~a~lR~gRfd 402 (494)
T COG0464 347 LASGRGPSEDGSGRRVVGQLLTELDGIE---------K--AEGVLVIAATNRPD-------------DLDPALLRPGRFD 402 (494)
T ss_pred hhccCCCCCchHHHHHHHHHHHHhcCCC---------c--cCceEEEecCCCcc-------------ccCHhhcccCccc
Confidence 7432 2333444442111 1 12377999999876 58999999 999
Q ss_pred eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHH-HHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703 488 LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEE-ASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL 566 (720)
Q Consensus 488 li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~e-a~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl 566 (720)
-++.+..|..++..+.+..|+.. ..+.+.++ ..+.+.+ +-. . .+...+..+++-
T Consensus 403 ~~i~v~~pd~~~r~~i~~~~~~~-------------~~~~~~~~~~~~~l~~----~t~------~--~sgadi~~i~~e 457 (494)
T COG0464 403 RLIYVPLPDLEERLEIFKIHLRD-------------KKPPLAEDVDLEELAE----ITE------G--YSGADIAALVRE 457 (494)
T ss_pred eEeecCCCCHHHHHHHHHHHhcc-------------cCCcchhhhhHHHHHH----Hhc------C--CCHHHHHHHHHH
Confidence 99999888877766555544310 11111111 1122221 111 1 234778888887
Q ss_pred HHHHHHHcC-CCCCCHHhHHHHHH
Q psy17703 567 SEAHAKMRY-SETVEVQDVDEAWR 589 (720)
Q Consensus 567 a~A~A~l~~-~~~V~~~Dv~~Ai~ 589 (720)
|.-.|..+. ...++.+|+.+|+.
T Consensus 458 a~~~~~~~~~~~~~~~~~~~~a~~ 481 (494)
T COG0464 458 AALEALREARRREVTLDDFLDALK 481 (494)
T ss_pred HHHHHHHHhccCCccHHHHHHHHH
Confidence 777777776 77899999999976
No 133
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.82 E-value=5.7e-08 Score=99.62 Aligned_cols=181 Identities=17% Similarity=0.210 Sum_probs=110.5
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD 423 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~ 423 (720)
..-+++|+|+||||||.|++++++.+... + ......++.... ... -.....++++|||++.++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~----~--~~~~~i~~~~~~----~~~------~~~~~~~~liiDdi~~l~~ 104 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYG----G--RNARYLDAASPL----LAF------DFDPEAELYAVDDVERLDD 104 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhC----C--CcEEEEehHHhH----HHH------hhcccCCEEEEeChhhcCc
Confidence 34689999999999999999999865210 0 001111110000 000 0123467999999999999
Q ss_pred HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc--eeEEEecCCChHHHH
Q psy17703 424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF--DLIFLLLDPQSEQFD 501 (720)
Q Consensus 424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF--dli~~l~d~~~~~~d 501 (720)
..+..|+.+++...- .....++.+++.... ...+.+.|.||| ...+.+.++.++...
T Consensus 105 ~~~~~L~~~~~~~~~-----------~~~~~vl~~~~~~~~----------~~~l~~~L~sr~~~~~~i~l~pl~~~~~~ 163 (227)
T PRK08903 105 AQQIALFNLFNRVRA-----------HGQGALLVAGPAAPL----------ALPLREDLRTRLGWGLVYELKPLSDADKI 163 (227)
T ss_pred hHHHHHHHHHHHHHH-----------cCCcEEEEeCCCCHH----------hCCCCHHHHHHHhcCeEEEecCCCHHHHH
Confidence 888889888864210 112223444442211 113568899999 467778877765422
Q ss_pred HHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCH
Q psy17703 502 ARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEV 581 (720)
Q Consensus 502 ~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~ 581 (720)
.. +++. +. .....+++++.+.|... ++.++|++..+++.-.+.|.... ..||.
T Consensus 164 ~~---------l~~~---~~-~~~v~l~~~al~~L~~~-------------~~gn~~~l~~~l~~l~~~~~~~~-~~i~~ 216 (227)
T PRK08903 164 AA---------LKAA---AA-ERGLQLADEVPDYLLTH-------------FRRDMPSLMALLDALDRYSLEQK-RPVTL 216 (227)
T ss_pred HH---------HHHH---HH-HcCCCCCHHHHHHHHHh-------------ccCCHHHHHHHHHHHHHHHHHhC-CCCCH
Confidence 11 2211 22 23577899999888742 45567999998887666665555 57887
Q ss_pred HhHHHHH
Q psy17703 582 QDVDEAW 588 (720)
Q Consensus 582 ~Dv~~Ai 588 (720)
..+.+++
T Consensus 217 ~~~~~~l 223 (227)
T PRK08903 217 PLLREML 223 (227)
T ss_pred HHHHHHH
Confidence 7777764
No 134
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.82 E-value=1.3e-07 Score=107.45 Aligned_cols=184 Identities=16% Similarity=0.166 Sum_probs=105.0
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCCCCccc----c-----------CCccccccccceeecC-ccccceeeecc-eeeecCC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVPRSQYT----S-----------GKGSSAVGLTAYITKD-PETRQMVLQTG-ALVLADS 410 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~pr~~~~----~-----------g~~ss~~glta~~~~~-~~~~~~~~~~G-~l~lad~ 410 (720)
.||+||||+|||++++.+++.+...... + +.......+.++..+. ....+...... .-..+..
T Consensus 39 yLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~ 118 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARF 118 (535)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCe
Confidence 4899999999999999999876321100 0 0001111111100000 00000000000 0112456
Q ss_pred ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703 411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF 490 (720)
Q Consensus 411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~ 490 (720)
.|++|||++.|+.+.+++|+..||+- |..+.+|.++|... .++++++||+. .|
T Consensus 119 KVvIIDEad~Lt~~A~NALLK~LEEp-------------p~~t~FIL~ttd~~-------------kL~~tI~SRc~-~~ 171 (535)
T PRK08451 119 KIFIIDEVHMLTKEAFNALLKTLEEP-------------PSYVKFILATTDPL-------------KLPATILSRTQ-HF 171 (535)
T ss_pred EEEEEECcccCCHHHHHHHHHHHhhc-------------CCceEEEEEECChh-------------hCchHHHhhce-eE
Confidence 79999999999999999999999862 23344444444222 58899999984 78
Q ss_pred EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703 491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH 570 (720)
Q Consensus 491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~ 570 (720)
.+..++.++.. +++...-+.-...+++++.+.|+... ..+.|.+..++.-+-+.
T Consensus 172 ~F~~Ls~~ei~-------------~~L~~Il~~EGi~i~~~Al~~Ia~~s-------------~GdlR~alnlLdqai~~ 225 (535)
T PRK08451 172 RFKQIPQNSII-------------SHLKTILEKEGVSYEPEALEILARSG-------------NGSLRDTLTLLDQAIIY 225 (535)
T ss_pred EcCCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCcHHHHHHHHHHHHHh
Confidence 88877765443 23332222234567888888777431 12457776666543333
Q ss_pred HHHcCCCCCCHHhHHHHH
Q psy17703 571 AKMRYSETVEVQDVDEAW 588 (720)
Q Consensus 571 A~l~~~~~V~~~Dv~~Ai 588 (720)
+ ...+|.+++.+.+
T Consensus 226 ~----~~~It~~~V~~~l 239 (535)
T PRK08451 226 C----KNAITESKVADML 239 (535)
T ss_pred c----CCCCCHHHHHHHh
Confidence 2 3578888887663
No 135
>KOG0737|consensus
Probab=98.81 E-value=2.3e-09 Score=113.12 Aligned_cols=135 Identities=24% Similarity=0.259 Sum_probs=83.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceee-----ec---CCceeecc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALV-----LA---DSGVCCID 416 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~-----la---d~gI~~ID 416 (720)
...|||+||||||||++|+++++.+... ..++..+... ..|.-++-.++ +| ...|+|||
T Consensus 127 ~kGiLL~GPpG~GKTmlAKA~Akeaga~---------fInv~~s~lt----~KWfgE~eKlv~AvFslAsKl~P~iIFID 193 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTMLAKAIAKEAGAN---------FINVSVSNLT----SKWFGEAQKLVKAVFSLASKLQPSIIFID 193 (386)
T ss_pred CccceecCCCCchHHHHHHHHHHHcCCC---------cceeeccccc----hhhHHHHHHHHHHHHhhhhhcCcceeehh
Confidence 4689999999999999999999977432 1111111111 12222222221 11 25799999
Q ss_pred ccccCChHHHHHHHHHHHhc--eEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecC
Q psy17703 417 EFDKMSDTTRSILHEVMEQQ--TLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLD 494 (720)
Q Consensus 417 Eidkm~~~~~~~L~e~mE~~--~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d 494 (720)
|+|.|-..-+..=||+|..- .+-..=+|....-+.++.|+||+|.+. +|..|+++|+.-.|.+.-
T Consensus 194 Evds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~-------------DlDeAiiRR~p~rf~V~l 260 (386)
T KOG0737|consen 194 EVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPF-------------DLDEAIIRRLPRRFHVGL 260 (386)
T ss_pred hHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCc-------------cHHHHHHHhCcceeeeCC
Confidence 99887533233334444221 110111455555566899999999665 689999999998888887
Q ss_pred CChHHHHHHHH
Q psy17703 495 PQSEQFDARLA 505 (720)
Q Consensus 495 ~~~~~~d~~la 505 (720)
|..+.+.+++.
T Consensus 261 P~~~qR~kILk 271 (386)
T KOG0737|consen 261 PDAEQRRKILK 271 (386)
T ss_pred CchhhHHHHHH
Confidence 77665554443
No 136
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=2.3e-08 Score=114.81 Aligned_cols=187 Identities=15% Similarity=0.172 Sum_probs=106.1
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCcccc---------------CCccccccccceeecC-ccccceeeecc-eeeec
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTS---------------GKGSSAVGLTAYITKD-PETRQMVLQTG-ALVLA 408 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~---------------g~~ss~~glta~~~~~-~~~~~~~~~~G-~l~la 408 (720)
.++||+||||+|||++++.+++.+....... |...+...+.+..... ...+....... .-..+
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g 118 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEG 118 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcC
Confidence 4788999999999999999999774321111 1111111110000000 00000000000 00123
Q ss_pred CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703 409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL 488 (720)
Q Consensus 409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl 488 (720)
...|++|||++.|+.+.+++|+.+||+. +.++.+|.++|... .++++++||+.
T Consensus 119 ~~kVIIIDEad~Lt~~a~naLLk~LEEP-------------~~~~ifILaTt~~~-------------kll~TI~SRcq- 171 (624)
T PRK14959 119 RYKVFIIDEAHMLTREAFNALLKTLEEP-------------PARVTFVLATTEPH-------------KFPVTIVSRCQ- 171 (624)
T ss_pred CceEEEEEChHhCCHHHHHHHHHHhhcc-------------CCCEEEEEecCChh-------------hhhHHHHhhhh-
Confidence 4579999999999999999999999863 12344555554211 47788999995
Q ss_pred EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE 568 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~ 568 (720)
++.+...+.++....|. ..-......+++++.+.|+... ..+.|....++.-+
T Consensus 172 ~i~F~pLs~~eL~~~L~-------------~il~~egi~id~eal~lIA~~s-------------~GdlR~Al~lLeql- 224 (624)
T PRK14959 172 HFTFTRLSEAGLEAHLT-------------KVLGREGVDYDPAAVRLIARRA-------------AGSVRDSMSLLGQV- 224 (624)
T ss_pred ccccCCCCHHHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHH-
Confidence 66777776665433332 2111224457888888877532 12346665555421
Q ss_pred HHHHHcCCCCCCHHhHHHHHH
Q psy17703 569 AHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 569 A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
. ..+.+.|+.+++..++.
T Consensus 225 -l--~~g~~~It~d~V~~~lg 242 (624)
T PRK14959 225 -L--ALGESRLTIDGARGVLG 242 (624)
T ss_pred -H--HhcCCCcCHHHHHHHhC
Confidence 1 23456899999887754
No 137
>KOG0736|consensus
Probab=98.81 E-value=2.1e-08 Score=113.81 Aligned_cols=131 Identities=25% Similarity=0.289 Sum_probs=81.3
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcccc----ccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSA----VGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK 420 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~----~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk 420 (720)
..-|||+||||||||.+|++||....- .+.+-+|... +|-.-.-+|+-+. ++ --|...|+|+||+|.
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEcsL-~FlSVKGPELLNMYVGqSE~NVR~VFe-----rA---R~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATECSL-NFLSVKGPELLNMYVGQSEENVREVFE-----RA---RSAAPCVIFFDELDS 775 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhcee-eEEeecCHHHHHHHhcchHHHHHHHHH-----Hh---hccCCeEEEeccccc
Confidence 458999999999999999999976532 2222232221 1211111111111 11 124568999999999
Q ss_pred CChH-------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--c
Q psy17703 421 MSDT-------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--R 485 (720)
Q Consensus 421 m~~~-------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--R 485 (720)
+.+. .-..|+.-| +|....-...+.||||+|.++ -|+|+||+ |
T Consensus 776 lAP~RG~sGDSGGVMDRVVSQLLAEL---------Dgls~~~s~~VFViGATNRPD-------------LLDpALLRPGR 833 (953)
T KOG0736|consen 776 LAPNRGRSGDSGGVMDRVVSQLLAEL---------DGLSDSSSQDVFVIGATNRPD-------------LLDPALLRPGR 833 (953)
T ss_pred cCccCCCCCCccccHHHHHHHHHHHh---------hcccCCCCCceEEEecCCCcc-------------ccChhhcCCCc
Confidence 8764 122344333 344443445789999999765 48899998 9
Q ss_pred ceeEEEecCCChHHHHHHHHh
Q psy17703 486 FDLIFLLLDPQSEQFDARLAR 506 (720)
Q Consensus 486 Fdli~~l~d~~~~~~d~~la~ 506 (720)
||-.+.+....+++...++-+
T Consensus 834 FDKLvyvG~~~d~esk~~vL~ 854 (953)
T KOG0736|consen 834 FDKLVYVGPNEDAESKLRVLE 854 (953)
T ss_pred cceeEEecCCccHHHHHHHHH
Confidence 997777776666655544433
No 138
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.80 E-value=4.9e-08 Score=99.80 Aligned_cols=184 Identities=21% Similarity=0.282 Sum_probs=109.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD 423 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~ 423 (720)
..-+++|+|+||||||.+++++++.+... + .....+.+....+... .+ + .. +...++++|||++.++.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~----~--~~~~~i~~~~~~~~~~-~~-~--~~--~~~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEER----G--KSAIYLPLAELAQADP-EV-L--EG--LEQADLVCLDDVEAIAG 104 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhc----C--CcEEEEeHHHHHHhHH-HH-H--hh--cccCCEEEEeChhhhcC
Confidence 45699999999999999999999865321 0 0111111110000000 00 0 00 12346999999999987
Q ss_pred HH--HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCC-hhhhccce--eEEEecCCChH
Q psy17703 424 TT--RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLP-HTLLSRFD--LIFLLLDPQSE 498 (720)
Q Consensus 424 ~~--~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~-~aLlsRFd--li~~l~d~~~~ 498 (720)
.. +..|..+++... . .+..+|.++|.....+ .+. +.|.+||. ..+.+.++..+
T Consensus 105 ~~~~~~~L~~~l~~~~----~--------~~~~iIits~~~~~~~----------~~~~~~L~~r~~~~~~i~l~~l~~~ 162 (226)
T TIGR03420 105 QPEWQEALFHLYNRVR----E--------AGGRLLIAGRAAPAQL----------PLRLPDLRTRLAWGLVFQLPPLSDE 162 (226)
T ss_pred ChHHHHHHHHHHHHHH----H--------cCCeEEEECCCChHHC----------CcccHHHHHHHhcCeeEecCCCCHH
Confidence 44 778888775321 0 0123555666433211 233 78899985 56777777664
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCC
Q psy17703 499 QFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSET 578 (720)
Q Consensus 499 ~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~ 578 (720)
+.... ++.+ +. .....+++++.+.|... ++.++|+|..++.-+.+.+.... ..
T Consensus 163 e~~~~---------l~~~---~~-~~~~~~~~~~l~~L~~~-------------~~gn~r~L~~~l~~~~~~~~~~~-~~ 215 (226)
T TIGR03420 163 EKIAA---------LQSR---AA-RRGLQLPDEVADYLLRH-------------GSRDMGSLMALLDALDRASLAAK-RK 215 (226)
T ss_pred HHHHH---------HHHH---HH-HcCCCCCHHHHHHHHHh-------------ccCCHHHHHHHHHHHHHHHHHhC-CC
Confidence 43222 2222 11 12456889998888752 35567999999998887665555 46
Q ss_pred CCHHhHHHHH
Q psy17703 579 VEVQDVDEAW 588 (720)
Q Consensus 579 V~~~Dv~~Ai 588 (720)
|+.+.+.+++
T Consensus 216 i~~~~~~~~~ 225 (226)
T TIGR03420 216 ITIPFVKEVL 225 (226)
T ss_pred CCHHHHHHHh
Confidence 8887777664
No 139
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.80 E-value=1.7e-08 Score=108.54 Aligned_cols=88 Identities=19% Similarity=0.089 Sum_probs=69.9
Q ss_pred cceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChh
Q psy17703 402 TGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHT 481 (720)
Q Consensus 402 ~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~a 481 (720)
.|.+..|++||+.++|+.|.+.+.+..|+.+++++.+.+ .|....++.+..|||++|+.+-. ..+ +...+.|
T Consensus 229 ~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~--~~~~~~~~~d~liia~sNe~e~~--~~~----~~k~~ea 300 (361)
T smart00763 229 DGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKG--TGGFAMIPIDGLIIAHSNESEWQ--RFK----SNKKNEA 300 (361)
T ss_pred cCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEec--CCcccccccceEEEEeCCHHHHh--hhh----ccccchh
Confidence 489999999999999999999999999999999999987 34555778888999999987521 111 1234699
Q ss_pred hhccceeEEEecCCChH
Q psy17703 482 LLSRFDLIFLLLDPQSE 498 (720)
Q Consensus 482 LlsRFdli~~l~d~~~~ 498 (720)
|++||. .+.+.++.+-
T Consensus 301 f~dR~~-~i~vpY~l~~ 316 (361)
T smart00763 301 LLDRII-KVKVPYCLRV 316 (361)
T ss_pred hhhceE-EEeCCCcCCH
Confidence 999998 6666666543
No 140
>KOG0731|consensus
Probab=98.80 E-value=1.5e-08 Score=116.99 Aligned_cols=189 Identities=22% Similarity=0.198 Sum_probs=109.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCC-ccccCCcc--ccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRS-QYTSGKGS--SAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD 423 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g~~s--s~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~ 423 (720)
-+||+||||||||.||+++|..+.-. +..+|.+. ..+|..++.+++-.. .+.. . ...|+||||||....
T Consensus 346 GvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~-----~ar~--~-aP~iifideida~~~ 417 (774)
T KOG0731|consen 346 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFP-----LARK--N-APSIIFIDEIDAVGR 417 (774)
T ss_pred ceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHH-----Hhhc--c-CCeEEEecccccccc
Confidence 69999999999999999999977422 22222211 112222333332111 1110 1 146999999988654
Q ss_pred HH------------HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeE
Q psy17703 424 TT------------RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLI 489 (720)
Q Consensus 424 ~~------------~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli 489 (720)
.. -..|.+.+- . -+|.... ..+.++|++|..+ .|++||++ |||-.
T Consensus 418 ~r~G~~~~~~~~e~e~tlnQll~----e--mDgf~~~--~~vi~~a~tnr~d-------------~ld~allrpGRfdr~ 476 (774)
T KOG0731|consen 418 KRGGKGTGGGQDEREQTLNQLLV----E--MDGFETS--KGVIVLAATNRPD-------------ILDPALLRPGRFDRQ 476 (774)
T ss_pred cccccccCCCChHHHHHHHHHHH----H--hcCCcCC--CcEEEEeccCCcc-------------ccCHHhcCCCccccc
Confidence 22 112333221 1 1343333 5688999999766 58899998 99988
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
+.+..|.-..+.+++.-|... ++ +..+..+.-. +. .+ ... .+.-.|..+..-|.-
T Consensus 477 i~i~~p~~~~r~~i~~~h~~~-------------~~--~~~e~~dl~~--~a-~~-----t~g--f~gadl~n~~neaa~ 531 (774)
T KOG0731|consen 477 IQIDLPDVKGRASILKVHLRK-------------KK--LDDEDVDLSK--LA-SL-----TPG--FSGADLANLCNEAAL 531 (774)
T ss_pred eeccCCchhhhHHHHHHHhhc-------------cC--CCcchhhHHH--HH-hc-----CCC--CcHHHHHhhhhHHHH
Confidence 888877777766666655311 11 1111111110 00 00 111 223566667777777
Q ss_pred HHHHcCCCCCCHHhHHHHHH
Q psy17703 570 HAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 570 ~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
+|.-+.+..|+..|+..|++
T Consensus 532 ~a~r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 532 LAARKGLREIGTKDLEYAIE 551 (774)
T ss_pred HHHHhccCccchhhHHHHHH
Confidence 77777888888888888887
No 141
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.1e-08 Score=115.99 Aligned_cols=131 Identities=29% Similarity=0.261 Sum_probs=85.1
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCC-ccccCCcc--ccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRS-QYTSGKGS--SAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g~~s--s~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
-.+||+||||||||.|+++++..+.-. .+.+|... ..+|..++.+++... ++.. . ...|+||||+|...
T Consensus 184 kGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~-----qAkk--~-aP~IIFIDEiDAvG 255 (596)
T COG0465 184 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFE-----QAKK--N-APCIIFIDEIDAVG 255 (596)
T ss_pred cceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHH-----Hhhc--c-CCCeEEEehhhhcc
Confidence 379999999999999999999988533 22333322 224555555554332 1111 1 14799999999876
Q ss_pred hHH--------------HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703 423 DTT--------------RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF 486 (720)
Q Consensus 423 ~~~--------------~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF 486 (720)
..- .+.|+--| +|.. -+..+.++||+|... -|++||++ ||
T Consensus 256 r~Rg~g~GggnderEQTLNQlLvEm---------DGF~--~~~gviviaaTNRpd-------------VlD~ALlRpgRF 311 (596)
T COG0465 256 RQRGAGLGGGNDEREQTLNQLLVEM---------DGFG--GNEGVIVIAATNRPD-------------VLDPALLRPGRF 311 (596)
T ss_pred cccCCCCCCCchHHHHHHHHHHhhh---------ccCC--CCCceEEEecCCCcc-------------cchHhhcCCCCc
Confidence 432 22333333 2322 235678999999665 47889998 99
Q ss_pred eeEEEecCCChHHHHHHHHhhc
Q psy17703 487 DLIFLLLDPQSEQFDARLARHL 508 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la~~i 508 (720)
|-.+.+..|+-..+...+.-|.
T Consensus 312 DRqI~V~~PDi~gRe~IlkvH~ 333 (596)
T COG0465 312 DRQILVELPDIKGREQILKVHA 333 (596)
T ss_pred ceeeecCCcchhhHHHHHHHHh
Confidence 9888887776666666666554
No 142
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.77 E-value=6.4e-08 Score=99.90 Aligned_cols=187 Identities=18% Similarity=0.181 Sum_probs=103.2
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD 423 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~ 423 (720)
+.-+++|+||||+|||.|++++++.+... | .....++...... ...+. .+ . +..-.+++|||++.++.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~----~--~~v~y~~~~~~~~-~~~~~-~~--~--~~~~dlliiDdi~~~~~ 111 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQR----G--RAVGYVPLDKRAW-FVPEV-LE--G--MEQLSLVCIDNIECIAG 111 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhC----C--CeEEEEEHHHHhh-hhHHH-HH--H--hhhCCEEEEeChhhhcC
Confidence 44689999999999999999988754321 0 0111111100000 00000 00 0 01124799999999864
Q ss_pred H--HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCChHH
Q psy17703 424 T--TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQSEQ 499 (720)
Q Consensus 424 ~--~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~~~~ 499 (720)
+ .+..|..++.... . ..+..++.|+|-.+..|. .+.+.|.|||. +++.+.+|++++
T Consensus 112 ~~~~~~~lf~l~n~~~----e-------~g~~~li~ts~~~p~~l~---------~~~~~L~SRl~~g~~~~l~~~~~~~ 171 (235)
T PRK08084 112 DELWEMAIFDLYNRIL----E-------SGRTRLLITGDRPPRQLN---------LGLPDLASRLDWGQIYKLQPLSDEE 171 (235)
T ss_pred CHHHHHHHHHHHHHHH----H-------cCCCeEEEeCCCChHHcC---------cccHHHHHHHhCCceeeecCCCHHH
Confidence 3 3444444433210 0 012234444543333332 25689999997 788888887766
Q ss_pred HHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCC
Q psy17703 500 FDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETV 579 (720)
Q Consensus 500 ~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V 579 (720)
..+.+.+ .|... .-.+++++.++|...+ +-+.|.++.++.... .+.+.....|
T Consensus 172 ~~~~l~~------------~a~~~-~~~l~~~v~~~L~~~~-------------~~d~r~l~~~l~~l~-~~~l~~~~~i 224 (235)
T PRK08084 172 KLQALQL------------RARLR-GFELPEDVGRFLLKRL-------------DREMRTLFMTLDQLD-RASITAQRKL 224 (235)
T ss_pred HHHHHHH------------HHHHc-CCCCCHHHHHHHHHhh-------------cCCHHHHHHHHHHHH-HHHHhcCCCC
Confidence 5444331 12222 4578999999988543 224577877666543 3334433568
Q ss_pred CHHhHHHHHH
Q psy17703 580 EVQDVDEAWR 589 (720)
Q Consensus 580 ~~~Dv~~Ai~ 589 (720)
|.+.+++++.
T Consensus 225 t~~~~k~~l~ 234 (235)
T PRK08084 225 TIPFVKEILK 234 (235)
T ss_pred CHHHHHHHHc
Confidence 9888888764
No 143
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=1.3e-07 Score=108.57 Aligned_cols=181 Identities=19% Similarity=0.192 Sum_probs=102.8
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCCCCcccc----CC-----------ccccccccceeecC-ccccc----eeeecceeee
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVPRSQYTS----GK-----------GSSAVGLTAYITKD-PETRQ----MVLQTGALVL 407 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~pr~~~~~----g~-----------~ss~~glta~~~~~-~~~~~----~~~~~G~l~l 407 (720)
+||+||||+|||++++.+++.+......+ |. ......+.++.... ...++ ....| ..
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p---~~ 117 (527)
T PRK14969 41 YLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAP---TR 117 (527)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCc---cc
Confidence 58999999999999999999773211111 10 00000111100000 00000 00111 12
Q ss_pred cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEE-ecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703 408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSIL-AAANPCDSQWNTSKTIIDNIRLPHTLLSRF 486 (720)
Q Consensus 408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~ii-aaaNp~~g~~~~~~~~~~~~~l~~aLlsRF 486 (720)
+...|++|||+|+|+.+.+++|+..||+- |..+.+| +|+||. .++++++||+
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEep-------------p~~~~fIL~t~d~~--------------kil~tI~SRc 170 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PEHVKFILATTDPQ--------------KIPVTVLSRC 170 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCC-------------CCCEEEEEEeCChh--------------hCchhHHHHH
Confidence 34579999999999999999999999863 2233344 443432 3777899999
Q ss_pred eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703 487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL 566 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl 566 (720)
.+|.+..++.++.... +...-..-.-.+++++.+.|.... ..++|...+++.-
T Consensus 171 -~~~~f~~l~~~~i~~~-------------L~~il~~egi~~~~~al~~la~~s-------------~Gslr~al~lldq 223 (527)
T PRK14969 171 -LQFNLKQMPPPLIVSH-------------LQHILEQENIPFDATALQLLARAA-------------AGSMRDALSLLDQ 223 (527)
T ss_pred -HHHhcCCCCHHHHHHH-------------HHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHH
Confidence 5778877766544322 222111113346777777766431 1234766666543
Q ss_pred HHHHHHHcCCCCCCHHhHHHHHH
Q psy17703 567 SEAHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 567 a~A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
+- +. +...|+.+++...+.
T Consensus 224 ai--~~--~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 224 AI--AY--GGGTVNESEVRAMLG 242 (527)
T ss_pred HH--Hh--cCCCcCHHHHHHHHC
Confidence 32 22 467899998888754
No 144
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.76 E-value=8.7e-08 Score=114.41 Aligned_cols=197 Identities=17% Similarity=0.204 Sum_probs=126.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCc-cccCC-ccccccccceeecCccccceeee--cceeeecCCceeecccccc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQ-YTSGK-GSSAVGLTAYITKDPETRQMVLQ--TGALVLADSGVCCIDEFDK 420 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~-~~~g~-~ss~~glta~~~~~~~~~~~~~~--~G~l~lad~gI~~IDEidk 420 (720)
.-++||.|.||+|||.|+.++|+...... ...-. -+....+.++...-...|++... |-.-.+.+||.+++||++-
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNL 1622 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINL 1622 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhh
Confidence 35899999999999999999999775422 11111 11222333332222233443322 2222345899999999999
Q ss_pred CChHHHHHHHHHHHhc-eEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHH
Q psy17703 421 MSDTTRSILHEVMEQQ-TLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQ 499 (720)
Q Consensus 421 m~~~~~~~L~e~mE~~-~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~ 499 (720)
.+.+..+.|...++.+ ...|....+....+.+|.|+||.||.+.+.... .||.++++||-.++.=....++
T Consensus 1623 aSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRK-------gLPkSF~nRFsvV~~d~lt~dD- 1694 (4600)
T COG5271 1623 ASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRK-------GLPKSFLNRFSVVKMDGLTTDD- 1694 (4600)
T ss_pred hHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcc-------cCCHHHhhhhheEEecccccch-
Confidence 9999999999999864 566767777788889999999999987653332 6999999999866543333322
Q ss_pred HHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhc-------CCCCCCcccCHHHHHHHHHH
Q psy17703 500 FDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKL-------GAGRGRISAYPRQLESLIRL 566 (720)
Q Consensus 500 ~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~-------~~~~~~~~~t~R~le~lirl 566 (720)
.- .|+ ....|.+.++-...++.+...+... +....+|..+.|.-.+|+.+
T Consensus 1695 i~-~Ia----------------~~~yp~v~~d~~~kiik~ms~lqd~i~k~~~~g~~gsPwefnlrdTLRwl~l 1751 (4600)
T COG5271 1695 IT-HIA----------------NKMYPQVNEDWRLKIIKFMSRLQDNIEKDISFGSFGSPWEFNLRDTLRWLIL 1751 (4600)
T ss_pred HH-HHH----------------HhhCCccChHHHHHHHHHHHHHHHhhhhhhcccCCCCCeEEehHHHHHHHHH
Confidence 11 122 1357777777777776665543221 22234666666655554433
No 145
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.76 E-value=3e-08 Score=118.74 Aligned_cols=127 Identities=28% Similarity=0.324 Sum_probs=75.1
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCc--cccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKG--SSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~--ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
..+||+||||||||+++++++..+....+. .+.. +..+|.+...+ +.....+ ......|+||||+|.+.
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i-----~~~f~~A---~~~~p~iifiDEid~l~ 559 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAI-----REIFRKA---RQAAPAIIFFDEIDAIA 559 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHH-----HHHHHHH---HhcCCEEEEEEChhhhh
Confidence 369999999999999999999876432211 1100 00011110000 0000001 01235799999999874
Q ss_pred hH------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--ccee
Q psy17703 423 DT------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDL 488 (720)
Q Consensus 423 ~~------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdl 488 (720)
+. ..+.|+..|+. . .-+.++.||||+|... .|++++++ |||.
T Consensus 560 ~~r~~~~~~~~~~~~~~~lL~~ldg---------~--~~~~~v~vI~aTn~~~-------------~ld~allRpgRfd~ 615 (733)
T TIGR01243 560 PARGARFDTSVTDRIVNQLLTEMDG---------I--QELSNVVVIAATNRPD-------------ILDPALLRPGRFDR 615 (733)
T ss_pred ccCCCCCCccHHHHHHHHHHHHhhc---------c--cCCCCEEEEEeCCChh-------------hCCHhhcCCCccce
Confidence 21 22334444432 1 1134688999999765 58999996 9999
Q ss_pred EEEecCCChHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARL 504 (720)
Q Consensus 489 i~~l~d~~~~~~d~~l 504 (720)
++.+..|..+++...+
T Consensus 616 ~i~v~~Pd~~~R~~i~ 631 (733)
T TIGR01243 616 LILVPPPDEEARKEIF 631 (733)
T ss_pred EEEeCCcCHHHHHHHH
Confidence 8888877766554443
No 146
>KOG1942|consensus
Probab=98.76 E-value=1.1e-07 Score=97.02 Aligned_cols=145 Identities=23% Similarity=0.239 Sum_probs=99.0
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
.|++||||++-++-+-...||.++|.-. --.+|.|+|.-.+.-.+...+..-..+|+.|++|.-++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~i--------------aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Ii 362 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPI--------------APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLII 362 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCC--------------CceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEE
Confidence 4789999999999999999999998532 12466777765444444455556678999999999644
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
-.+.++ +++....|... | +.-.-.+++++...+... +...|.|....|+.=+--
T Consensus 363 rt~~y~-~~e~r~Ii~~R------------a-~~E~l~~~e~a~~~l~~~------------gt~tsLRy~vqLl~p~~~ 416 (456)
T KOG1942|consen 363 RTLPYD-EEEIRQIIKIR------------A-QVEGLQVEEEALDLLAEI------------GTSTSLRYAVQLLTPASI 416 (456)
T ss_pred eeccCC-HHHHHHHHHHH------------H-hhhcceecHHHHHHHHhh------------ccchhHHHHHHhcCHHHH
Confidence 444444 44444333311 1 112445677777766532 122334666677777778
Q ss_pred HHHHcCCCCCCHHhHHHHHHHHHHH
Q psy17703 570 HAKMRYSETVEVQDVDEAWRLHREA 594 (720)
Q Consensus 570 ~A~l~~~~~V~~~Dv~~Ai~l~~~~ 594 (720)
.|+..+++.+..+|++++-.||.++
T Consensus 417 ~ak~~g~~~i~v~dvee~~~Lf~Da 441 (456)
T KOG1942|consen 417 LAKTNGRKEISVEDVEEVTELFLDA 441 (456)
T ss_pred HHHHcCCceeecccHHHHHHHHHhc
Confidence 9999999999999999999998654
No 147
>KOG0733|consensus
Probab=98.76 E-value=7.3e-09 Score=114.72 Aligned_cols=141 Identities=19% Similarity=0.219 Sum_probs=81.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHH
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTT 425 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~ 425 (720)
--|||+||||||||+||+++|+.+.-..+.-.-..-..|..+.- ....++..-++- .....|+||||||.+.+.-
T Consensus 224 rGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGES--EkkiRelF~~A~---~~aPcivFiDeIDAI~pkR 298 (802)
T KOG0733|consen 224 RGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGES--EKKIRELFDQAK---SNAPCIVFIDEIDAITPKR 298 (802)
T ss_pred CceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCccc--HHHHHHHHHHHh---ccCCeEEEeecccccccch
Confidence 36999999999999999999997743333211111111111110 000111111111 1135799999999998754
Q ss_pred HHHHHHHHHhceEeee---ccCe--EEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeEEEecCCChH
Q psy17703 426 RSILHEVMEQQTLSIA---KAGI--ICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLIFLLLDPQSE 498 (720)
Q Consensus 426 ~~~L~e~mE~~~vsi~---k~g~--~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli~~l~d~~~~ 498 (720)
.. -.+-||++.|+-- -++. ..+....+.||||+|.+. -|.++|.+ |||--+.+.-|+..
T Consensus 299 e~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD-------------slDpaLRRaGRFdrEI~l~vP~e~ 364 (802)
T KOG0733|consen 299 EE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD-------------SLDPALRRAGRFDREICLGVPSET 364 (802)
T ss_pred hh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc-------------ccCHHHhccccccceeeecCCchH
Confidence 33 2334555443210 0111 122346799999999776 47888887 99987777777666
Q ss_pred HHHHHHH
Q psy17703 499 QFDARLA 505 (720)
Q Consensus 499 ~~d~~la 505 (720)
.+.++|.
T Consensus 365 aR~~IL~ 371 (802)
T KOG0733|consen 365 AREEILR 371 (802)
T ss_pred HHHHHHH
Confidence 5555443
No 148
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=7.9e-08 Score=109.35 Aligned_cols=185 Identities=20% Similarity=0.198 Sum_probs=104.4
Q ss_pred cE-EEEcCCCCHHHHHHHHHHhhCCCC--cc-cc-----------CCccccccccceeecCc-cccceeeecce-eeecC
Q psy17703 347 NI-LLCGDPGTSKSQLLSYVYDLVPRS--QY-TS-----------GKGSSAVGLTAYITKDP-ETRQMVLQTGA-LVLAD 409 (720)
Q Consensus 347 ~v-LL~G~PGtGKS~ll~~va~~~pr~--~~-~~-----------g~~ss~~glta~~~~~~-~~~~~~~~~G~-l~lad 409 (720)
|. ||+||||||||++++++++.+... .. .+ +.......+.+...... ..++..-.... -..+.
T Consensus 37 ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~ 116 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGG 116 (504)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCC
Confidence 55 999999999999999999976321 00 00 11111111111100000 00011000011 12345
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
..+++|||++.|+.+.+++|+..||+.. ..+.+|.++|... .+++++.||+. .
T Consensus 117 ~kVVIIDEad~ls~~a~naLLk~LEep~-------------~~t~~Il~t~~~~-------------kl~~~I~SRc~-~ 169 (504)
T PRK14963 117 RKVYILDEAHMMSKSAFNALLKTLEEPP-------------EHVIFILATTEPE-------------KMPPTILSRTQ-H 169 (504)
T ss_pred CeEEEEECccccCHHHHHHHHHHHHhCC-------------CCEEEEEEcCChh-------------hCChHHhcceE-E
Confidence 6799999999999999999999998631 2234444444221 48899999996 7
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
|.+..++.++.. +++...-+.-.-.+++++.+.|.... ....|.+..++.-.-+
T Consensus 170 ~~f~~ls~~el~-------------~~L~~i~~~egi~i~~~Al~~ia~~s-------------~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 170 FRFRRLTEEEIA-------------GKLRRLLEAEGREAEPEALQLVARLA-------------DGAMRDAESLLERLLA 223 (504)
T ss_pred EEecCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHHh
Confidence 788877666543 33333222224456888888876432 1234666555443211
Q ss_pred HHHHcCCCCCCHHhHHHHHH
Q psy17703 570 HAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 570 ~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
....+|.+++..++.
T Consensus 224 -----~~~~It~~~V~~~l~ 238 (504)
T PRK14963 224 -----LGTPVTRKQVEEALG 238 (504)
T ss_pred -----cCCCCCHHHHHHHHC
Confidence 134788888887754
No 149
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.75 E-value=2.1e-07 Score=107.47 Aligned_cols=184 Identities=20% Similarity=0.191 Sum_probs=104.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCccccC---------------CccccccccceeecCc-cccceeeecc-eeeecC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSG---------------KGSSAVGLTAYITKDP-ETRQMVLQTG-ALVLAD 409 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g---------------~~ss~~glta~~~~~~-~~~~~~~~~G-~l~lad 409 (720)
..||+||||||||++++.+++.+.......+ .......+.++..... ..++..-... .-..+.
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~ 119 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAK 119 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCC
Confidence 3788999999999999999997642211111 1111111111000000 0000000000 011345
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEE-ecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSIL-AAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL 488 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~ii-aaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl 488 (720)
..|++|||++.|+....++|+..||+- |..+.+| +|++|. .++++++||+.
T Consensus 120 ~kViIIDE~~~Lt~~a~naLLKtLEep-------------p~~~ifIlatt~~~--------------ki~~tI~SRc~- 171 (559)
T PRK05563 120 YKVYIIDEVHMLSTGAFNALLKTLEEP-------------PAHVIFILATTEPH--------------KIPATILSRCQ- 171 (559)
T ss_pred eEEEEEECcccCCHHHHHHHHHHhcCC-------------CCCeEEEEEeCChh--------------hCcHHHHhHhe-
Confidence 679999999999999999999999853 2334444 444432 48899999996
Q ss_pred EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE 568 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~ 568 (720)
.|.+..++.++... ++.+.-+.....+++++.+.++... ..++|...+++.-+.
T Consensus 172 ~~~f~~~~~~ei~~-------------~L~~i~~~egi~i~~~al~~ia~~s-------------~G~~R~al~~Ldq~~ 225 (559)
T PRK05563 172 RFDFKRISVEDIVE-------------RLKYILDKEGIEYEDEALRLIARAA-------------EGGMRDALSILDQAI 225 (559)
T ss_pred EEecCCCCHHHHHH-------------HHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHH
Confidence 67777666554332 2322222234567888877776431 123476666665333
Q ss_pred HHHHHcCCCCCCHHhHHHHH
Q psy17703 569 AHAKMRYSETVEVQDVDEAW 588 (720)
Q Consensus 569 A~A~l~~~~~V~~~Dv~~Ai 588 (720)
+. ..+.++.+|+..++
T Consensus 226 ~~----~~~~It~~~V~~vl 241 (559)
T PRK05563 226 SF----GDGKVTYEDALEVT 241 (559)
T ss_pred Hh----ccCCCCHHHHHHHh
Confidence 32 24578888888764
No 150
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.75 E-value=1.6e-07 Score=101.85 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=76.0
Q ss_pred cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEeccc-CCCCCCCCCcccccccCCChhhhccc
Q psy17703 408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAAN-PCDSQWNTSKTIIDNIRLPHTLLSRF 486 (720)
Q Consensus 408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaN-p~~g~~~~~~~~~~~~~l~~aLlsRF 486 (720)
++..+++|||++.++++.+..|+..|++.. ..+.+|.++| +. .+.++|.+|+
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~-------------~~~~~Il~~~~~~--------------~~~~~L~sr~ 176 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQYS-------------RTCRFIIATRQPS--------------KLIPPIRSRC 176 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhcc-------------CCCeEEEEeCChh--------------hCchhhcCCc
Confidence 456799999999999988999999987531 1233444443 32 2567899998
Q ss_pred eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703 487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL 566 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl 566 (720)
. .+.+.+++.++.. +++...-..-...+++++.+.+.... +.+.|.+...+.
T Consensus 177 ~-~v~~~~~~~~~~~-------------~~l~~~~~~~~~~~~~~al~~l~~~~-------------~gdlr~l~~~l~- 228 (337)
T PRK12402 177 L-PLFFRAPTDDELV-------------DVLESIAEAEGVDYDDDGLELIAYYA-------------GGDLRKAILTLQ- 228 (337)
T ss_pred e-EEEecCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHH-
Confidence 5 5666666554432 22222222234568899998887542 123466544333
Q ss_pred HHHHHHHcCCCCCCHHhHHHHHH
Q psy17703 567 SEAHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 567 a~A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
..+ .....||.+|+.+++.
T Consensus 229 --~~~--~~~~~It~~~v~~~~~ 247 (337)
T PRK12402 229 --TAA--LAAGEITMEAAYEALG 247 (337)
T ss_pred --HHH--HcCCCCCHHHHHHHhC
Confidence 222 2235799999988754
No 151
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.75 E-value=6.5e-08 Score=106.77 Aligned_cols=141 Identities=17% Similarity=0.178 Sum_probs=83.5
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCcc------cc-CCccccccccceeecCccccceeeeccee----ee-----
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQY------TS-GKGSSAVGLTAYITKDPETRQMVLQTGAL----VL----- 407 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~------~~-g~~ss~~glta~~~~~~~~~~~~~~~G~l----~l----- 407 (720)
..-|++|+|+||||||++|+.++..+..... ++ +...+......+.. +....+...+|.+ ..
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r--P~~vgy~~~~G~f~~~~~~A~~~p 270 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR--PNGVGFRRKDGIFYNFCQQAKEQP 270 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC--CCCCCeEecCchHHHHHHHHHhcc
Confidence 4569999999999999999999987632100 00 00000000000000 0111233334422 01
Q ss_pred cCCceeeccccccCChHH-HHHHHHHHHhce------Eee--ec-cCeEEeecCceEEEecccCCCCCCCCCcccccccC
Q psy17703 408 ADSGVCCIDEFDKMSDTT-RSILHEVMEQQT------LSI--AK-AGIICQLNARTSILAAANPCDSQWNTSKTIIDNIR 477 (720)
Q Consensus 408 ad~gI~~IDEidkm~~~~-~~~L~e~mE~~~------vsi--~k-~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~ 477 (720)
..+.+++|||+|+.+.+. ...+..+||.+. +.+ .. .+....+|.++.||||||..+.. + ..
T Consensus 271 ~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs------~---~~ 341 (459)
T PRK11331 271 EKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRS------L---AV 341 (459)
T ss_pred cCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccc------h---hh
Confidence 135689999999999654 667788888541 221 11 23356789999999999977622 1 14
Q ss_pred CChhhhccceeEEEecCC
Q psy17703 478 LPHTLLSRFDLIFLLLDP 495 (720)
Q Consensus 478 l~~aLlsRFdli~~l~d~ 495 (720)
++.||++||..+-..++.
T Consensus 342 lD~AlrRRF~fi~i~p~~ 359 (459)
T PRK11331 342 VDYALRRRFSFIDIEPGF 359 (459)
T ss_pred ccHHHHhhhheEEecCCC
Confidence 899999999754444333
No 152
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=1.5e-07 Score=106.11 Aligned_cols=185 Identities=15% Similarity=0.198 Sum_probs=103.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCC----cccc-----------CCccccccccceeecC-ccccceeeecc-eeeec
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRS----QYTS-----------GKGSSAVGLTAYITKD-PETRQMVLQTG-ALVLA 408 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~-----------g~~ss~~glta~~~~~-~~~~~~~~~~G-~l~la 408 (720)
.++||+||||+|||++|+.+++.+... .-.+ +.......+.++-... ...++..-... .-..+
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~ 115 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISS 115 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccC
Confidence 369999999999999999999865211 0000 1111111111110000 00000000000 00234
Q ss_pred CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703 409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL 488 (720)
Q Consensus 409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl 488 (720)
...+++|||++.|+.+.+++|+..||+- |..+.+|.++|... +++++++||+-
T Consensus 116 ~~KVvIIDEah~Ls~~A~NaLLK~LEeP-------------p~~v~fIlatte~~-------------Kl~~tI~SRc~- 168 (491)
T PRK14964 116 KFKVYIIDEVHMLSNSAFNALLKTLEEP-------------APHVKFILATTEVK-------------KIPVTIISRCQ- 168 (491)
T ss_pred CceEEEEeChHhCCHHHHHHHHHHHhCC-------------CCCeEEEEEeCChH-------------HHHHHHHHhhe-
Confidence 5679999999999999999999999863 23344444444221 48899999994
Q ss_pred EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE 568 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~ 568 (720)
.|.+..++.++.. +++...-+.-...+++++.+.|.+.. ..+.|.+.+++.-+-
T Consensus 169 ~~~f~~l~~~el~-------------~~L~~ia~~Egi~i~~eAL~lIa~~s-------------~GslR~alslLdqli 222 (491)
T PRK14964 169 RFDLQKIPTDKLV-------------EHLVDIAKKENIEHDEESLKLIAENS-------------SGSMRNALFLLEQAA 222 (491)
T ss_pred eeecccccHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHH
Confidence 6777766655432 33333222235578888888776432 123466555554332
Q ss_pred HHHHHcCCCCCCHHhHHHH
Q psy17703 569 AHAKMRYSETVEVQDVDEA 587 (720)
Q Consensus 569 A~A~l~~~~~V~~~Dv~~A 587 (720)
+.+ .+.|+.+++.+.
T Consensus 223 ~y~----~~~It~e~V~~l 237 (491)
T PRK14964 223 IYS----NNKISEKSVRDL 237 (491)
T ss_pred Hhc----CCCCCHHHHHHH
Confidence 222 236777777664
No 153
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=9e-08 Score=110.64 Aligned_cols=122 Identities=20% Similarity=0.173 Sum_probs=78.2
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecc-cCCCCCCCCCcccccccCCChhhhcccee
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAA-NPCDSQWNTSKTIIDNIRLPHTLLSRFDL 488 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaa-Np~~g~~~~~~~~~~~~~l~~aLlsRFdl 488 (720)
..|++|||++.|+.+.+++|+..||+- |..+.+|.++ +|. +++++++||+ .
T Consensus 125 ~KV~IIDEvh~Ls~~a~NaLLKtLEEP-------------P~~~~fIL~Ttd~~--------------kil~TIlSRc-~ 176 (618)
T PRK14951 125 FKVFMIDEVHMLTNTAFNAMLKTLEEP-------------PEYLKFVLATTDPQ--------------KVPVTVLSRC-L 176 (618)
T ss_pred ceEEEEEChhhCCHHHHHHHHHhcccC-------------CCCeEEEEEECCch--------------hhhHHHHHhc-e
Confidence 469999999999999999999999862 2334444444 332 3778899999 5
Q ss_pred EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE 568 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~ 568 (720)
+|.+...+.++.... +...-....-.+++++.+.|.... ..+.|.+.+++.-+
T Consensus 177 ~~~f~~Ls~eei~~~-------------L~~i~~~egi~ie~~AL~~La~~s-------------~GslR~al~lLdq~- 229 (618)
T PRK14951 177 QFNLRPMAPETVLEH-------------LTQVLAAENVPAEPQALRLLARAA-------------RGSMRDALSLTDQA- 229 (618)
T ss_pred eeecCCCCHHHHHHH-------------HHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHH-
Confidence 888887776544322 222212224456778877776431 12457777665322
Q ss_pred HHHHHcCCCCCCHHhHHHHHH
Q psy17703 569 AHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 569 A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
.+. +...|+.+++..++.
T Consensus 230 -ia~--~~~~It~~~V~~~Lg 247 (618)
T PRK14951 230 -IAF--GSGQLQEAAVRQMLG 247 (618)
T ss_pred -HHh--cCCCcCHHHHHHHHc
Confidence 222 345788888887754
No 154
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.74 E-value=2.4e-07 Score=110.97 Aligned_cols=130 Identities=22% Similarity=0.248 Sum_probs=77.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCcc--ccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGS--SAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~s--s~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
.-++||+||||||||++++++++.+....+. ++... ...|...... ......+ ......++||||+|.+
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l-----~~lf~~a---~~~~p~il~iDEid~l 283 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERL-----REIFKEA---EENAPSIIFIDEIDAI 283 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHH-----HHHHHHH---HhcCCcEEEeehhhhh
Confidence 3579999999999999999999977543221 11100 0000000000 0000000 0112469999999887
Q ss_pred Ch-----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--ccee
Q psy17703 422 SD-----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDL 488 (720)
Q Consensus 422 ~~-----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdl 488 (720)
.+ ..+..|+..|+... -..++.+++|+|+.. .+++++.+ |||.
T Consensus 284 ~~~r~~~~~~~~~~~~~~Ll~~ld~l~-----------~~~~vivI~atn~~~-------------~ld~al~r~gRfd~ 339 (733)
T TIGR01243 284 APKREEVTGEVEKRVVAQLLTLMDGLK-----------GRGRVIVIGATNRPD-------------ALDPALRRPGRFDR 339 (733)
T ss_pred cccccCCcchHHHHHHHHHHHHhhccc-----------cCCCEEEEeecCChh-------------hcCHHHhCchhccE
Confidence 43 23456777775321 123578899999764 47888887 9998
Q ss_pred EEEecCCChHHHHHHHHh
Q psy17703 489 IFLLLDPQSEQFDARLAR 506 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~ 506 (720)
.+.+..|+.++....+..
T Consensus 340 ~i~i~~P~~~~R~~Il~~ 357 (733)
T TIGR01243 340 EIVIRVPDKRARKEILKV 357 (733)
T ss_pred EEEeCCcCHHHHHHHHHH
Confidence 888888876665555543
No 155
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.74 E-value=5.4e-07 Score=109.07 Aligned_cols=50 Identities=22% Similarity=0.326 Sum_probs=38.2
Q ss_pred CCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCC
Q psy17703 662 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP 713 (720)
Q Consensus 662 ~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p 713 (720)
.++..+||++++..+....++.+|++..+.-.+ |....+ .+|.|+.++|-
T Consensus 671 ~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~-gr~vd~-rn~iiI~TSN~ 720 (857)
T PRK10865 671 YSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQ-GRTVDF-RNTVVIMTSNL 720 (857)
T ss_pred CCeEEEeehhhCCHHHHHHHHHHHhhCceecCC-ceEEee-cccEEEEeCCc
Confidence 357899999999999999999999998886432 333333 24777888885
No 156
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.73 E-value=6e-08 Score=115.72 Aligned_cols=176 Identities=14% Similarity=0.253 Sum_probs=125.8
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCcc-c-cCCccccccccceeecCccccceeeecceeeec--CCceeeccccc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQY-T-SGKGSSAVGLTAYITKDPETRQMVLQTGALVLA--DSGVCCIDEFD 419 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~-~g~~ss~~glta~~~~~~~~~~~~~~~G~l~la--d~gI~~IDEid 419 (720)
...++|+-||+.+|||.++.|+++...+-.. . .+..+......+.++.+ .+|...++.|.++-| .|..+.+||++
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTd-d~G~lsFkEGvLVeAlR~GyWIVLDELN 965 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTD-DDGSLSFKEGVLVEALRRGYWIVLDELN 965 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeec-CCCceeeehhHHHHHHhcCcEEEeeccc
Confidence 5679999999999999999999998865422 2 22223333333333333 346677888888765 56688999999
Q ss_pred cCChHHHHHHHHHHHh-ceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChH
Q psy17703 420 KMSDTTRSILHEVMEQ-QTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSE 498 (720)
Q Consensus 420 km~~~~~~~L~e~mE~-~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~ 498 (720)
-++.+..++|.+.+++ +.+.|........-+.+|.++||.||+++ |.+.| .|+.|+..|| +-..+.|.|..
T Consensus 966 LApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~-YgGRK------~LSrAFRNRF-lE~hFddiped 1037 (4600)
T COG5271 966 LAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGG-YGGRK------GLSRAFRNRF-LEMHFDDIPED 1037 (4600)
T ss_pred cCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCcc-ccchH------HHHHHHHhhh-HhhhcccCcHH
Confidence 9999999999999975 66777766666666789999999999764 44444 4889999999 45566777777
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhc
Q psy17703 499 QFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKL 546 (720)
Q Consensus 499 ~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~ 546 (720)
+...++.. +..+.+.-+..+++.|..++..
T Consensus 1038 Ele~ILh~------------------rc~iapSyakKiVeVyr~Ls~r 1067 (4600)
T COG5271 1038 ELEEILHG------------------RCEIAPSYAKKIVEVYRGLSSR 1067 (4600)
T ss_pred HHHHHHhc------------------cCccCHHHHHHHHHHHHHhhhh
Confidence 66555442 2344455566778888776543
No 157
>PRK06620 hypothetical protein; Validated
Probab=98.72 E-value=3e-07 Score=93.48 Aligned_cols=166 Identities=16% Similarity=0.181 Sum_probs=96.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHH
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTT 425 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~ 425 (720)
-.++|+||||+|||.|++++++.... .+.+. ..... . ......++||||++.+....
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-~~~~~---------------~~~~~-----~--~~~~~d~lliDdi~~~~~~~ 101 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-YIIKD---------------IFFNE-----E--ILEKYNAFIIEDIENWQEPA 101 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-EEcch---------------hhhch-----h--HHhcCCEEEEeccccchHHH
Confidence 45999999999999999998765421 11110 00000 0 01234689999999765322
Q ss_pred HHHHHH-HHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCChHHHHH
Q psy17703 426 RSILHE-VMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQSEQFDA 502 (720)
Q Consensus 426 ~~~L~e-~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~~~~~d~ 502 (720)
.-.++. +.|.+. ..++++..+.. .+.+ ++|.||+. +++.+..|.++....
T Consensus 102 lf~l~N~~~e~g~---------------~ilits~~~p~-----------~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~ 154 (214)
T PRK06620 102 LLHIFNIINEKQK---------------YLLLTSSDKSR-----------NFTL-PDLSSRIKSVLSILLNSPDDELIKI 154 (214)
T ss_pred HHHHHHHHHhcCC---------------EEEEEcCCCcc-----------ccch-HHHHHHHhCCceEeeCCCCHHHHHH
Confidence 222222 223322 23455544332 1246 88999997 567888877665432
Q ss_pred HHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHH
Q psy17703 503 RLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQ 582 (720)
Q Consensus 503 ~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~ 582 (720)
.+. +. ++. -.-.+++++.+.|.... +-+.|.++.++....+.|.... ..+|..
T Consensus 155 ~l~---------k~---~~~-~~l~l~~ev~~~L~~~~-------------~~d~r~l~~~l~~l~~~~~~~~-~~it~~ 207 (214)
T PRK06620 155 LIF---------KH---FSI-SSVTISRQIIDFLLVNL-------------PREYSKIIEILENINYFALISK-RKITIS 207 (214)
T ss_pred HHH---------HH---HHH-cCCCCCHHHHHHHHHHc-------------cCCHHHHHHHHHHHHHHHHHcC-CCCCHH
Confidence 222 11 111 24568999999988543 2235888887776555555554 358887
Q ss_pred hHHHHH
Q psy17703 583 DVDEAW 588 (720)
Q Consensus 583 Dv~~Ai 588 (720)
.+++++
T Consensus 208 ~~~~~l 213 (214)
T PRK06620 208 LVKEVL 213 (214)
T ss_pred HHHHHh
Confidence 777764
No 158
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=2e-07 Score=107.44 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=77.7
Q ss_pred cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEE-EecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703 408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSI-LAAANPCDSQWNTSKTIIDNIRLPHTLLSRF 486 (720)
Q Consensus 408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~i-iaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF 486 (720)
++..|++|||++.|+.+.+++|+..||+- |..+.+ ++++++. .+++++.||+
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEp-------------p~~~~fIL~tte~~--------------kll~TI~SRc 169 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEP-------------PEHLIFIFATTEPE--------------KVLPTIRSRT 169 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcC-------------CCCeEEEEEeCChH--------------hhHHHHHHhc
Confidence 45679999999999999999999999862 223344 4444431 5889999997
Q ss_pred eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703 487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL 566 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl 566 (720)
..|.+...+.++.. +++...-+.....+++++...+.... ..++|...+++.-
T Consensus 170 -~~~~F~~l~~~~i~-------------~~L~~i~~~egi~i~~~al~~Ia~~s-------------~GdlR~aln~Ldq 222 (584)
T PRK14952 170 -HHYPFRLLPPRTMR-------------ALIARICEQEGVVVDDAVYPLVIRAG-------------GGSPRDTLSVLDQ 222 (584)
T ss_pred -eEEEeeCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHH
Confidence 47888777655433 33333222234457777777765321 1234666555543
Q ss_pred HHHHHHHcCCCCCCHHhHHHHH
Q psy17703 567 SEAHAKMRYSETVEVQDVDEAW 588 (720)
Q Consensus 567 a~A~A~l~~~~~V~~~Dv~~Ai 588 (720)
.-+ ..+...|+.+++...+
T Consensus 223 l~~---~~~~~~It~~~v~~ll 241 (584)
T PRK14952 223 LLA---GAADTHVTYQRALGLL 241 (584)
T ss_pred HHh---ccCCCCcCHHHHHHHH
Confidence 222 2234677877777654
No 159
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.71 E-value=1.5e-07 Score=107.64 Aligned_cols=185 Identities=13% Similarity=0.204 Sum_probs=101.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCcccc----CCc-----------cccccccceeecC-ccccceeeecc-eeeecC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTS----GKG-----------SSAVGLTAYITKD-PETRQMVLQTG-ALVLAD 409 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~----g~~-----------ss~~glta~~~~~-~~~~~~~~~~G-~l~lad 409 (720)
.+||+||||+|||++|+.+++.+....... |.- .....+.++.... ...+...-... .-..++
T Consensus 40 A~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~ 119 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFK 119 (605)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCC
Confidence 489999999999999999999763211111 100 0000111100000 00000000000 012345
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
.+|++|||++.|+...+++|+..||+- |..+.+|.+++.. ..++++++||+. +
T Consensus 120 ~KVIIIDEad~Lt~~A~NaLLKtLEEP-------------p~~tvfIL~Tt~~-------------~KLl~TI~SRcq-~ 172 (605)
T PRK05896 120 YKVYIIDEAHMLSTSAWNALLKTLEEP-------------PKHVVFIFATTEF-------------QKIPLTIISRCQ-R 172 (605)
T ss_pred cEEEEEechHhCCHHHHHHHHHHHHhC-------------CCcEEEEEECCCh-------------HhhhHHHHhhhh-h
Confidence 789999999999999999999999863 2233444444311 148899999996 6
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
+.+..++.++... ++...-..-...+++++.+.+++.. ..++|.+..++.-.
T Consensus 173 ieF~~Ls~~eL~~-------------~L~~il~kegi~Is~eal~~La~lS-------------~GdlR~AlnlLekL-- 224 (605)
T PRK05896 173 YNFKKLNNSELQE-------------LLKSIAKKEKIKIEDNAIDKIADLA-------------DGSLRDGLSILDQL-- 224 (605)
T ss_pred cccCCCCHHHHHH-------------HHHHHHHHcCCCCCHHHHHHHHHHc-------------CCcHHHHHHHHHHH--
Confidence 7777776654432 2222222224467888877766431 12345555544432
Q ss_pred HHHHcCCCCCCHHhHHHHH
Q psy17703 570 HAKMRYSETVEVQDVDEAW 588 (720)
Q Consensus 570 ~A~l~~~~~V~~~Dv~~Ai 588 (720)
+...+ ..++.+++.+++
T Consensus 225 -~~y~~-~~It~e~V~ell 241 (605)
T PRK05896 225 -STFKN-SEIDIEDINKTF 241 (605)
T ss_pred -HhhcC-CCCCHHHHHHHh
Confidence 22233 238888887753
No 160
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=8.8e-09 Score=110.23 Aligned_cols=87 Identities=29% Similarity=0.453 Sum_probs=61.5
Q ss_pred heeecccCCceeeeeeccCcccCCccCCCCCCCCcceeeccCC-------------------ccchhhhhhhhcCC----
Q psy17703 287 AFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRS-------------------HFTDKQLVRLQETP---- 343 (720)
Q Consensus 287 ~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~~~~~~~~s-------------------~~~d~Q~iklQE~p---- 343 (720)
..|.|.+||+....|+++ ||+|+.|++|.-..... +....-.+..+|.|
T Consensus 6 t~f~C~~CG~~s~KW~Gk--------Cp~Cg~Wns~vE~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~Ri~t 77 (456)
T COG1066 6 TAFVCQECGYVSPKWLGK--------CPACGAWNTLVEEVLAASPGGAPNKRRSGKAGSEPSKVLKLSDIELEEEPRIST 77 (456)
T ss_pred cEEEcccCCCCCcccccc--------CCCCCCccceEEeeccccccccccccccccccCCcccceeeccceeeecccccC
Confidence 789999999999999976 99999999987544111 11122233344444
Q ss_pred ----------C----CccEEEEcCCCCHHHHHHHHHHh-hC--CCCccccCCccc
Q psy17703 344 ----------A----EINILLCGDPGTSKSQLLSYVYD-LV--PRSQYTSGKGSS 381 (720)
Q Consensus 344 ----------g----~i~vLL~G~PGtGKS~ll~~va~-~~--pr~~~~~g~~ss 381 (720)
| ..-+|+-|+||.|||+|+-.++. ++ .+..|.+|.+|-
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~ 132 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESL 132 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCH
Confidence 2 24799999999999998766655 33 246788887663
No 161
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.68 E-value=2.6e-07 Score=99.49 Aligned_cols=181 Identities=16% Similarity=0.222 Sum_probs=104.2
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCcc-----ccceeeecceeeecCCceeecccccc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPE-----TRQMVLQTGALVLADSGVCCIDEFDK 420 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~-----~~~~~~~~G~l~lad~gI~~IDEidk 420 (720)
.|++|+|+||+|||++++++++.+....+. .....+.+....... ..++. +...+..++..+++|||++.
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~----~~~i~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~vviiDe~~~ 113 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELYGEDWR----ENFLELNASDERGIDVIRNKIKEFA-RTAPVGGAPFKIIFLDEADN 113 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCccc----cceEEeccccccchHHHHHHHHHHH-hcCCCCCCCceEEEEeCccc
Confidence 479999999999999999999876321110 000011000000000 00000 00111113456999999999
Q ss_pred CChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHH
Q psy17703 421 MSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQF 500 (720)
Q Consensus 421 m~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~ 500 (720)
++.+.+..|+..|+... ..+.+|.++|... .+.+++.+|+. .+.+..++.++.
T Consensus 114 l~~~~~~~L~~~le~~~-------------~~~~lIl~~~~~~-------------~l~~~l~sr~~-~~~~~~l~~~ei 166 (319)
T PRK00440 114 LTSDAQQALRRTMEMYS-------------QNTRFILSCNYSS-------------KIIDPIQSRCA-VFRFSPLKKEAV 166 (319)
T ss_pred CCHHHHHHHHHHHhcCC-------------CCCeEEEEeCCcc-------------ccchhHHHHhh-eeeeCCCCHHHH
Confidence 99988899999887421 2344555565321 36678999997 467766665443
Q ss_pred HHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCC
Q psy17703 501 DARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVE 580 (720)
Q Consensus 501 d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~ 580 (720)
. +++...-......+++++.+.++... ..++|.+...++.+.+. ...||
T Consensus 167 ~-------------~~l~~~~~~~~~~i~~~al~~l~~~~-------------~gd~r~~~~~l~~~~~~-----~~~it 215 (319)
T PRK00440 167 A-------------ERLRYIAENEGIEITDDALEAIYYVS-------------EGDMRKAINALQAAAAT-----GKEVT 215 (319)
T ss_pred H-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHc-----CCCCC
Confidence 2 23322222235568889888886431 12357766666533221 36799
Q ss_pred HHhHHHHHH
Q psy17703 581 VQDVDEAWR 589 (720)
Q Consensus 581 ~~Dv~~Ai~ 589 (720)
.+++..++.
T Consensus 216 ~~~v~~~~~ 224 (319)
T PRK00440 216 EEAVYKITG 224 (319)
T ss_pred HHHHHHHhC
Confidence 999988753
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.68 E-value=1.6e-06 Score=105.43 Aligned_cols=49 Identities=22% Similarity=0.341 Sum_probs=39.5
Q ss_pred CcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCC
Q psy17703 663 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP 713 (720)
Q Consensus 663 ~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p 713 (720)
.+..+||++++.......++++|+++.+.-++ |....+ .+|.||+++|=
T Consensus 669 ~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~-g~~vd~-rn~iiI~TSn~ 717 (852)
T TIGR03346 669 SVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQ-GRTVDF-RNTVIIMTSNL 717 (852)
T ss_pred cEEEEeccccCCHHHHHHHHHHHhcCceecCC-CeEEec-CCcEEEEeCCc
Confidence 46789999999999999999999999988554 444443 36889999884
No 163
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.68 E-value=9.5e-08 Score=104.33 Aligned_cols=121 Identities=23% Similarity=0.343 Sum_probs=87.3
Q ss_pred CCceeeccccccCChH------------HHHHHHHHHHhceEeeeccCeEEeec-CceEEEecccCCCCCCCCCcccccc
Q psy17703 409 DSGVCCIDEFDKMSDT------------TRSILHEVMEQQTLSIAKAGIICQLN-ARTSILAAANPCDSQWNTSKTIIDN 475 (720)
Q Consensus 409 d~gI~~IDEidkm~~~------------~~~~L~e~mE~~~vsi~k~g~~~~l~-a~~~iiaaaNp~~g~~~~~~~~~~~ 475 (720)
..||+|||||||+... .|.+|+..||.-++++ |.| ..+ .+..+||+.- |...+ .
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~-k~~---~i~T~~ILFI~~GA-----F~~~k----p 315 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST-KYG---MVKTDHILFIASGA-----FHVSK----P 315 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee-cce---eEECCceeEEecCC-----cCCCC----h
Confidence 7899999999998632 5889999999888876 333 223 3466666543 22222 1
Q ss_pred cCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHH-hhcCCcchHHHHHHHHHHHHHh
Q psy17703 476 IRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQ-EHLSPTLSEEASQRLIQTYVDM 543 (720)
Q Consensus 476 ~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar-~~~~p~ls~ea~~~l~~~y~~l 543 (720)
-+|-|.|.-||.+++.+.+...++..+.|..- ...+++.|.+.-+ ..+.-.++++|.+.|++...+.
T Consensus 316 ~DlIPEl~GR~Pi~v~L~~L~~~dL~~ILteP-~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~ 383 (443)
T PRK05201 316 SDLIPELQGRFPIRVELDALTEEDFVRILTEP-KASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQV 383 (443)
T ss_pred hhccHHHhCccceEEECCCCCHHHHHHHhcCC-hhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHh
Confidence 35779999999999999999888777666531 2447888887443 4577789999999998877654
No 164
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.68 E-value=1.3e-07 Score=113.98 Aligned_cols=174 Identities=12% Similarity=0.130 Sum_probs=92.3
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCcccccccccee-e-cCccccceeeeccee----ee-cCCceeec
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYI-T-KDPETRQMVLQTGAL----VL-ADSGVCCI 415 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~-~-~~~~~~~~~~~~G~l----~l-ad~gI~~I 415 (720)
..-|++|+||||+|||++++.+++.+...... ...+.....+..+. . .....|+|.-+-..+ .. ..+.|+||
T Consensus 207 ~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfI 286 (852)
T TIGR03345 207 RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFI 286 (852)
T ss_pred CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 45699999999999999999999976432110 00111111000000 0 001112221100000 00 13569999
Q ss_pred cccccCCh-----HHH---HHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703 416 DEFDKMSD-----TTR---SILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD 487 (720)
Q Consensus 416 DEidkm~~-----~~~---~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd 487 (720)
||++.+.. ..+ +.|..+|+.+ ...+|||+++...+ ..+.++++|.+||.
T Consensus 287 DEih~l~~~g~~~~~~d~~n~Lkp~l~~G---------------~l~~IgaTT~~e~~--------~~~~~d~AL~rRf~ 343 (852)
T TIGR03345 287 DEAHTLIGAGGQAGQGDAANLLKPALARG---------------ELRTIAATTWAEYK--------KYFEKDPALTRRFQ 343 (852)
T ss_pred eChHHhccCCCccccccHHHHhhHHhhCC---------------CeEEEEecCHHHHh--------hhhhccHHHHHhCe
Confidence 99999853 122 2466666544 35678999865311 12457899999997
Q ss_pred eEEEecCCChHHHHHHHHhh-----------cchhHHHHHHHHHHhhcCC-cchHHHHHHHHHHHH
Q psy17703 488 LIFLLLDPQSEQFDARLARH-----------LDITVLRDYIAYAQEHLSP-TLSEEASQRLIQTYV 541 (720)
Q Consensus 488 li~~l~d~~~~~~d~~la~~-----------i~~~~l~~~i~~ar~~~~p-~ls~ea~~~l~~~y~ 541 (720)
++.+..|+.++....+... ++.+.+...+..+..++.- .+++.|++.|-+.-.
T Consensus 344 -~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a 408 (852)
T TIGR03345 344 -VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACA 408 (852)
T ss_pred -EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHH
Confidence 6788888777665553211 1333444444444444332 345555555544433
No 165
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.67 E-value=8.4e-07 Score=97.55 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=86.9
Q ss_pred ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEee-cCceEEEecccCCCCCCCCCcccccccCCChhhhccce-e
Q psy17703 411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQL-NARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD-L 488 (720)
Q Consensus 411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l-~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd-l 488 (720)
.+++|||+|.+....+..|.+.+.-.. .... +.++.+|+++|...- . -.+.+.+.+||. .
T Consensus 131 ~vlvIDE~d~L~~~~~~~L~~l~~~~~--------~~~~~~~~v~lI~i~n~~~~--------~--~~l~~~~~s~~~~~ 192 (365)
T TIGR02928 131 LIIVLDEIDYLVGDDDDLLYQLSRARS--------NGDLDNAKVGVIGISNDLKF--------R--ENLDPRVKSSLCEE 192 (365)
T ss_pred EEEEECchhhhccCCcHHHHhHhcccc--------ccCCCCCeEEEEEEECCcch--------H--hhcCHHHhccCCcc
Confidence 478999999995433444554442110 1111 246788888885421 1 146788889996 4
Q ss_pred EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE 568 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~ 568 (720)
.+.+.+...++....+..+ +..+- -...+++++.+.+..... +. ...+|....+++.|.
T Consensus 193 ~i~f~p~~~~e~~~il~~r---------~~~~~--~~~~~~~~~l~~i~~~~~--~~--------~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 193 EIIFPPYDAEELRDILENR---------AEKAF--YDGVLDDGVIPLCAALAA--QE--------HGDARKAIDLLRVAG 251 (365)
T ss_pred eeeeCCCCHHHHHHHHHHH---------HHhhc--cCCCCChhHHHHHHHHHH--Hh--------cCCHHHHHHHHHHHH
Confidence 4566666555544443322 21111 123467777666654321 11 124588888888888
Q ss_pred HHHHHcCCCCCCHHhHHHHHHHHH
Q psy17703 569 AHAKMRYSETVEVQDVDEAWRLHR 592 (720)
Q Consensus 569 A~A~l~~~~~V~~~Dv~~Ai~l~~ 592 (720)
-.|..+.+..|+.+|+..|+....
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHH
Confidence 888888888999999999988654
No 166
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.65 E-value=3.3e-08 Score=100.84 Aligned_cols=239 Identities=20% Similarity=0.200 Sum_probs=146.7
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhC-------CCCccc---cCCccccccccceeecCccccceeeecceeeecCCcee
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLV-------PRSQYT---SGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVC 413 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~-------pr~~~~---~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~ 413 (720)
...++||.||+|.|||.|++.+.++- .+.+-+ +..+.++..-..+.++...+|...-+.|.+-.||||.+
T Consensus 207 sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggml 286 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGML 286 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceE
Confidence 56799999999999999999998743 221111 11122222112234455677777788999999999999
Q ss_pred eccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEec
Q psy17703 414 CIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLL 493 (720)
Q Consensus 414 ~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~ 493 (720)
|+||+..+..+.|..|+.++|+..+.- -|......++|.+||-+.....+|- ..-.+...|.-|..+ +.+.
T Consensus 287 fldeigelgadeqamllkaieekrf~p--fgsdr~v~sdfqliagtvrdlrq~v------aeg~fredl~arinl-wtf~ 357 (531)
T COG4650 287 FLDEIGELGADEQAMLLKAIEEKRFYP--FGSDRQVSSDFQLIAGTVRDLRQLV------AEGKFREDLYARINL-WTFT 357 (531)
T ss_pred ehHhhhhcCccHHHHHHHHHHhhccCC--CCCccccccchHHhhhhHHHHHHHH------hccchHHHHHHhhhe-eeee
Confidence 999999999999999999999887653 5666677788999887754321111 111355667777763 3333
Q ss_pred CCChHHHHHHHHhhcchhHHHHHHHHHHhh-cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703 494 DPQSEQFDARLARHLDITVLRDYIAYAQEH-LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK 572 (720)
Q Consensus 494 d~~~~~~d~~la~~i~~~~l~~~i~~ar~~-~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~ 572 (720)
-|.-....+.|...++.++.+ .|+.. -..++.-|+......+. .+....+..+-|.|.+-+.- .|-
T Consensus 358 lpgl~qr~ediepnldyeler----ha~~~g~~vrfntearra~l~fa------~spqa~w~gnfrelsasvtr---mat 424 (531)
T COG4650 358 LPGLRQRQEDIEPNLDYELER----HASLTGDSVRFNTEARRAWLAFA------TSPQATWRGNFRELSASVTR---MAT 424 (531)
T ss_pred ccccccCccccCCCccHHHHH----HHHhhCceeeeehHHHHHHHHhc------cCcchhhcccHHHHhHHHHH---HHH
Confidence 333233333344444444433 23322 12345556654443332 22233455666877654322 233
Q ss_pred HcCCCCCCHHhHHHHHHHHHHHHHHhccCCCC
Q psy17703 573 MRYSETVEVQDVDEAWRLHREALKQSATDPLS 604 (720)
Q Consensus 573 l~~~~~V~~~Dv~~Ai~l~~~~l~~~~~d~~~ 604 (720)
+..+..++.+-+++-|.-++++..+....+.+
T Consensus 425 lad~grit~~~ve~ei~rlr~~w~~~~p~~l~ 456 (531)
T COG4650 425 LADSGRITLDVVEDEINRLRYNWQESRPSALT 456 (531)
T ss_pred HhcCCceeHHHHHHHHHHHHHHhhhcCchhhh
Confidence 45567889988988888777877765544433
No 167
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.65 E-value=4.7e-07 Score=99.10 Aligned_cols=186 Identities=17% Similarity=0.197 Sum_probs=102.0
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCcc----ccC-----------CccccccccceeecCc-cccceeeeccee-eecC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQY----TSG-----------KGSSAVGLTAYITKDP-ETRQMVLQTGAL-VLAD 409 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~----~~g-----------~~ss~~glta~~~~~~-~~~~~~~~~G~l-~lad 409 (720)
.+||+||||+|||++++.+++.+..... .+| .......+.+...... ...+..-..... ..++
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~ 117 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGK 117 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCC
Confidence 4799999999999999999987643210 000 0000000100000000 000000001111 2345
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
..+++|||++.|+...++.|+..+|+. |..+.+|.++|... .+.+++.+|+. .
T Consensus 118 ~~vviidea~~l~~~~~~~Ll~~le~~-------------~~~~~lIl~~~~~~-------------~l~~~l~sr~~-~ 170 (355)
T TIGR02397 118 YKVYIIDEVHMLSKSAFNALLKTLEEP-------------PEHVVFILATTEPH-------------KIPATILSRCQ-R 170 (355)
T ss_pred ceEEEEeChhhcCHHHHHHHHHHHhCC-------------ccceeEEEEeCCHH-------------HHHHHHHhhee-E
Confidence 679999999999999899999998752 23455555554221 47789999995 6
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
+.+.+++.++....+. . ++++ ..-.+++++.+.+.+.. ..++|.+...+.-...
T Consensus 171 ~~~~~~~~~~l~~~l~---------~---~~~~-~g~~i~~~a~~~l~~~~-------------~g~~~~a~~~lekl~~ 224 (355)
T TIGR02397 171 FDFKRIPLEDIVERLK---------K---ILDK-EGIKIEDEALELIARAA-------------DGSLRDALSLLDQLIS 224 (355)
T ss_pred EEcCCCCHHHHHHHHH---------H---HHHH-cCCCCCHHHHHHHHHHc-------------CCChHHHHHHHHHHHh
Confidence 6776665544322222 1 1222 24467888888777432 1134555554432222
Q ss_pred HHHHcCCCCCCHHhHHHHHH
Q psy17703 570 HAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 570 ~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
. . ...++.+|+.+++.
T Consensus 225 ~---~-~~~it~~~v~~~~~ 240 (355)
T TIGR02397 225 F---G-NGNITYEDVNELLG 240 (355)
T ss_pred h---c-CCCCCHHHHHHHhC
Confidence 2 1 24589999988754
No 168
>PRK06893 DNA replication initiation factor; Validated
Probab=98.63 E-value=3.2e-07 Score=94.32 Aligned_cols=181 Identities=20% Similarity=0.210 Sum_probs=102.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC----CCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP----RSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p----r~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
-.++|+||||||||.|++++++.+- +..|.+...... .... .++ .+.+..+++|||++.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~-----------~~~~-~~~----~~~~~dlLilDDi~~~ 103 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY-----------FSPA-VLE----NLEQQDLVCLDDLQAV 103 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh-----------hhHH-HHh----hcccCCEEEEeChhhh
Confidence 3579999999999999999998642 222222110000 0000 000 1224569999999987
Q ss_pred Ch--HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCCh
Q psy17703 422 SD--TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQS 497 (720)
Q Consensus 422 ~~--~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~~ 497 (720)
.. ..+..|+..++...- . ....++.|+|..+..|.. ..+.|.||+- +++.+..|.+
T Consensus 104 ~~~~~~~~~l~~l~n~~~~----~-------~~~illits~~~p~~l~~---------~~~~L~sRl~~g~~~~l~~pd~ 163 (229)
T PRK06893 104 IGNEEWELAIFDLFNRIKE----Q-------GKTLLLISADCSPHALSI---------KLPDLASRLTWGEIYQLNDLTD 163 (229)
T ss_pred cCChHHHHHHHHHHHHHHH----c-------CCcEEEEeCCCChHHccc---------cchhHHHHHhcCCeeeCCCCCH
Confidence 53 334467666653210 1 112344455533333221 3378999874 6788888876
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCC
Q psy17703 498 EQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSE 577 (720)
Q Consensus 498 ~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~ 577 (720)
+...+.+.++ +.. -.-.+++++.++|...+ +-+.|.++.++..-.. +.+....
T Consensus 164 e~~~~iL~~~------------a~~-~~l~l~~~v~~~L~~~~-------------~~d~r~l~~~l~~l~~-~~~~~~~ 216 (229)
T PRK06893 164 EQKIIVLQRN------------AYQ-RGIELSDEVANFLLKRL-------------DRDMHTLFDALDLLDK-ASLQAQR 216 (229)
T ss_pred HHHHHHHHHH------------HHH-cCCCCCHHHHHHHHHhc-------------cCCHHHHHHHHHHHHH-HHHhcCC
Confidence 6554333321 111 24678999998887543 2245777776653332 3333233
Q ss_pred CCCHHhHHHHHH
Q psy17703 578 TVEVQDVDEAWR 589 (720)
Q Consensus 578 ~V~~~Dv~~Ai~ 589 (720)
.+|...+++++.
T Consensus 217 ~it~~~v~~~L~ 228 (229)
T PRK06893 217 KLTIPFVKEILG 228 (229)
T ss_pred CCCHHHHHHHhc
Confidence 689888887753
No 169
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=5.3e-07 Score=104.67 Aligned_cols=184 Identities=17% Similarity=0.176 Sum_probs=101.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCccc---------------cCCccccccccceee-cCccccceeeecc-eeeecC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYT---------------SGKGSSAVGLTAYIT-KDPETRQMVLQTG-ALVLAD 409 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~---------------~g~~ss~~glta~~~-~~~~~~~~~~~~G-~l~lad 409 (720)
..||+||||+|||++++.+++.+...... .|.........+.-. .-...++..-... .-..++
T Consensus 40 ayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~ 119 (576)
T PRK14965 40 AFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSR 119 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCC
Confidence 35899999999999999999976421100 011111100100000 0000000000000 002345
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
..|++|||++.|+...+++|+..||+- |..+.+|.++|... +|+++++||+- +
T Consensus 120 ~KVvIIdev~~Lt~~a~naLLk~LEep-------------p~~~~fIl~t~~~~-------------kl~~tI~SRc~-~ 172 (576)
T PRK14965 120 YKIFIIDEVHMLSTNAFNALLKTLEEP-------------PPHVKFIFATTEPH-------------KVPITILSRCQ-R 172 (576)
T ss_pred ceEEEEEChhhCCHHHHHHHHHHHHcC-------------CCCeEEEEEeCChh-------------hhhHHHHHhhh-h
Confidence 679999999999999999999999963 33444454444211 58999999995 7
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
|.+..++.++.. .++...-+.-.-.+++++.+.+.... ..+.|.+.+++. +.
T Consensus 173 ~~f~~l~~~~i~-------------~~L~~i~~~egi~i~~~al~~la~~a-------------~G~lr~al~~Ld--ql 224 (576)
T PRK14965 173 FDFRRIPLQKIV-------------DRLRYIADQEGISISDAALALVARKG-------------DGSMRDSLSTLD--QV 224 (576)
T ss_pred hhcCCCCHHHHH-------------HHHHHHHHHhCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHH--HH
Confidence 777766655432 22222212224457788877776432 123365555543 22
Q ss_pred HHHHcCCCCCCHHhHHHH
Q psy17703 570 HAKMRYSETVEVQDVDEA 587 (720)
Q Consensus 570 ~A~l~~~~~V~~~Dv~~A 587 (720)
.+... +.|+.+|+...
T Consensus 225 iay~g--~~It~edV~~l 240 (576)
T PRK14965 225 LAFCG--DAVGDDDVAEL 240 (576)
T ss_pred HHhcc--CCCCHHHHHHH
Confidence 22222 45888887765
No 170
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=8.1e-07 Score=106.22 Aligned_cols=186 Identities=15% Similarity=0.090 Sum_probs=98.6
Q ss_pred c-EEEEcCCCCHHHHHHHHHHhhCCCCcc----ccCC------------c-cccccccceeecC-ccccceeeec-ceee
Q psy17703 347 N-ILLCGDPGTSKSQLLSYVYDLVPRSQY----TSGK------------G-SSAVGLTAYITKD-PETRQMVLQT-GALV 406 (720)
Q Consensus 347 ~-vLL~G~PGtGKS~ll~~va~~~pr~~~----~~g~------------~-ss~~glta~~~~~-~~~~~~~~~~-G~l~ 406 (720)
| +||+|++|+|||++++.+++.+....- .+|. + .....+.++.... ...++..-+. -.-.
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~ 117 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPA 117 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchh
Confidence 5 799999999999999999997742110 0110 0 0000000000000 0000000000 0012
Q ss_pred ecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703 407 LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF 486 (720)
Q Consensus 407 lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF 486 (720)
.....|++|||+++|+...+++|+..||+- +..+.+|.++|-.. +|.++|.||+
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEp-------------P~~~~fIl~tt~~~-------------kLl~TIrSRc 171 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEP-------------PEHLKFIFATTEPD-------------KVIGTIRSRT 171 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCC-------------CCCeEEEEEeCChh-------------hhhHHHHhhe
Confidence 234679999999999999999999999863 22344444444221 3778999999
Q ss_pred eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703 487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL 566 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl 566 (720)
- +|.|.....++.. +++...-..-...+++++...|+...- .+.|.+.+++.-
T Consensus 172 ~-~v~F~~l~~~~l~-------------~~L~~il~~EGv~id~eal~lLa~~sg-------------GdlR~Al~eLEK 224 (824)
T PRK07764 172 H-HYPFRLVPPEVMR-------------GYLERICAQEGVPVEPGVLPLVIRAGG-------------GSVRDSLSVLDQ 224 (824)
T ss_pred e-EEEeeCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHcC-------------CCHHHHHHHHHH
Confidence 5 6677666554433 223222111234567777666654321 123544444332
Q ss_pred HHHHHHHcCCCCCCHHhHHHHH
Q psy17703 567 SEAHAKMRYSETVEVQDVDEAW 588 (720)
Q Consensus 567 a~A~A~l~~~~~V~~~Dv~~Ai 588 (720)
.-+ ....+.|+.+++...+
T Consensus 225 Lia---~~~~~~IT~e~V~all 243 (824)
T PRK07764 225 LLA---GAGPEGVTYERAVALL 243 (824)
T ss_pred HHh---hcCCCCCCHHHHHHHh
Confidence 111 2234567877777653
No 171
>KOG0739|consensus
Probab=98.61 E-value=2.7e-08 Score=101.80 Aligned_cols=128 Identities=27% Similarity=0.293 Sum_probs=76.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeeccee-----eec---CCceeecc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGAL-----VLA---DSGVCCID 416 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l-----~la---d~gI~~ID 416 (720)
..-|||+||||||||.|++++|..+. +.+.+-..+..+ ..|.-+...| .+| ...|+|||
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSSSDLv------------SKWmGESEkLVknLFemARe~kPSIIFiD 232 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEAN-STFFSVSSSDLV------------SKWMGESEKLVKNLFEMARENKPSIIFID 232 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeehHHHH------------HHHhccHHHHHHHHHHHHHhcCCcEEEee
Confidence 35799999999999999999998776 444333222221 1122121111 122 24799999
Q ss_pred ccccCCh--------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703 417 EFDKMSD--------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL 488 (720)
Q Consensus 417 Eidkm~~--------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl 488 (720)
|+|.+-. ..|-.--|.+-| . .| ...-+..+.|++|+|-++ .|..++.+||+-
T Consensus 233 EiDslcg~r~enEseasRRIKTEfLVQ----M--qG-VG~d~~gvLVLgATNiPw-------------~LDsAIRRRFek 292 (439)
T KOG0739|consen 233 EIDSLCGSRSENESEASRRIKTEFLVQ----M--QG-VGNDNDGVLVLGATNIPW-------------VLDSAIRRRFEK 292 (439)
T ss_pred hhhhhccCCCCCchHHHHHHHHHHHHh----h--hc-cccCCCceEEEecCCCch-------------hHHHHHHHHhhc
Confidence 9998732 112111222211 1 11 112245688999999776 688999999998
Q ss_pred EEEecCCChHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLA 505 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la 505 (720)
.+-++-|....+..+..
T Consensus 293 RIYIPLPe~~AR~~MF~ 309 (439)
T KOG0739|consen 293 RIYIPLPEAHARARMFK 309 (439)
T ss_pred ceeccCCcHHHhhhhhe
Confidence 77777665444433333
No 172
>PRK08727 hypothetical protein; Validated
Probab=98.60 E-value=4.9e-07 Score=93.24 Aligned_cols=182 Identities=18% Similarity=0.160 Sum_probs=105.2
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeeccee-eecCCceeeccccccCC--h
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGAL-VLADSGVCCIDEFDKMS--D 423 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l-~lad~gI~~IDEidkm~--~ 423 (720)
.++|+|++|||||.|+++++..+.+. +. ....++..- ...... ..+ .+..-.+++|||++.+. +
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~----~~--~~~y~~~~~----~~~~~~---~~~~~l~~~dlLiIDDi~~l~~~~ 109 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQA----GR--SSAYLPLQA----AAGRLR---DALEALEGRSLVALDGLESIAGQR 109 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc----CC--cEEEEeHHH----hhhhHH---HHHHHHhcCCEEEEeCcccccCCh
Confidence 59999999999999999997755321 10 111111100 000000 000 11234589999999886 3
Q ss_pred HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc--eeEEEecCCChHHHH
Q psy17703 424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF--DLIFLLLDPQSEQFD 501 (720)
Q Consensus 424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF--dli~~l~d~~~~~~d 501 (720)
..+..+...++... ..+..+|.|+|-.+..|.. +.+.|.||| .+++.+..+.+++..
T Consensus 110 ~~~~~lf~l~n~~~------------~~~~~vI~ts~~~p~~l~~---------~~~dL~SRl~~~~~~~l~~~~~e~~~ 168 (233)
T PRK08727 110 EDEVALFDFHNRAR------------AAGITLLYTARQMPDGLAL---------VLPDLRSRLAQCIRIGLPVLDDVARA 168 (233)
T ss_pred HHHHHHHHHHHHHH------------HcCCeEEEECCCChhhhhh---------hhHHHHHHHhcCceEEecCCCHHHHH
Confidence 44566777765431 1123477777755544432 568999997 477888888776554
Q ss_pred HHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCH
Q psy17703 502 ARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEV 581 (720)
Q Consensus 502 ~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~ 581 (720)
..+.+ .|... .-.+++++.+.|.+..- .+.|.+..++....+.+....+ .+|.
T Consensus 169 ~iL~~------------~a~~~-~l~l~~e~~~~La~~~~-------------rd~r~~l~~L~~l~~~~~~~~~-~it~ 221 (233)
T PRK08727 169 AVLRE------------RAQRR-GLALDEAAIDWLLTHGE-------------RELAGLVALLDRLDRESLAAKR-RVTV 221 (233)
T ss_pred HHHHH------------HHHHc-CCCCCHHHHHHHHHhCC-------------CCHHHHHHHHHHHHHHHHHhCC-CCCH
Confidence 43332 12221 45689999988875531 2236665555544443444444 6888
Q ss_pred HhHHHHHH
Q psy17703 582 QDVDEAWR 589 (720)
Q Consensus 582 ~Dv~~Ai~ 589 (720)
+.+++++.
T Consensus 222 ~~~~~~l~ 229 (233)
T PRK08727 222 PFLRRVLE 229 (233)
T ss_pred HHHHHHHh
Confidence 77777654
No 173
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.59 E-value=6.2e-08 Score=103.57 Aligned_cols=140 Identities=15% Similarity=0.212 Sum_probs=76.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCC--ccccccccceeecCccccceeeecceee--ecCCceeeccccc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGK--GSSAVGLTAYITKDPETRQMVLQTGALV--LADSGVCCIDEFD 419 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~--~ss~~glta~~~~~~~~~~~~~~~G~l~--lad~gI~~IDEid 419 (720)
..-++|+||||||||.+++++++.+.-..+ .++. .+..+|.....++..+ -++.... .....|+||||||
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F-----~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRY-----REAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHH-----HHHHHHhhccCCCeEEEEehhh
Confidence 356899999999999999999998753321 1111 1122222222222111 1111110 1124699999999
Q ss_pred cCChH---------HH---HHHHHHHHhceEeeeccCeE--EeecCceEEEecccCCCCCCCCCcccccccCCChhhhc-
Q psy17703 420 KMSDT---------TR---SILHEVMEQQTLSIAKAGII--CQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS- 484 (720)
Q Consensus 420 km~~~---------~~---~~L~e~mE~~~vsi~k~g~~--~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls- 484 (720)
..-.. .| ..|+..|+.-+ .+.-.|.. ..-..++.||+|+|... .|+++|++
T Consensus 223 A~~g~r~~~~~tv~~qiV~~tLLnl~D~p~-~v~l~G~w~~~~~~~~V~VIaTTNrpd-------------~LDpALlRp 288 (413)
T PLN00020 223 AGAGRFGTTQYTVNNQMVNGTLMNIADNPT-NVSLGGDWREKEEIPRVPIIVTGNDFS-------------TLYAPLIRD 288 (413)
T ss_pred hcCCCCCCCCcchHHHHHHHHHHHHhcCCc-cccccccccccccCCCceEEEeCCCcc-------------cCCHhHcCC
Confidence 76542 11 23444444211 11112221 23356789999999665 59999999
Q ss_pred -cceeEEEecCCChHHHHHHHH
Q psy17703 485 -RFDLIFLLLDPQSEQFDARLA 505 (720)
Q Consensus 485 -RFdli~~l~d~~~~~~d~~la 505 (720)
|||..+. -|..+++..++.
T Consensus 289 GRfDk~i~--lPd~e~R~eIL~ 308 (413)
T PLN00020 289 GRMEKFYW--APTREDRIGVVH 308 (413)
T ss_pred CCCCceeC--CCCHHHHHHHHH
Confidence 9997653 344444444444
No 174
>KOG0728|consensus
Probab=98.58 E-value=1.1e-07 Score=95.18 Aligned_cols=130 Identities=25% Similarity=0.322 Sum_probs=83.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCC-ccccCCccc--cccccceeecCccccceeeecceeeec---CCceeeccccc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRS-QYTSGKGSS--AVGLTAYITKDPETRQMVLQTGALVLA---DSGVCCIDEFD 419 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g~~ss--~~glta~~~~~~~~~~~~~~~G~l~la---d~gI~~IDEid 419 (720)
-.+||+||||||||.|+++++...... +..+|.+-- .+|..+-.++ ..+++| ...|+|.||||
T Consensus 182 KGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvr-----------elfvmarehapsiifmdeid 250 (404)
T KOG0728|consen 182 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVR-----------ELFVMAREHAPSIIFMDEID 250 (404)
T ss_pred cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHH-----------HHHHHHHhcCCceEeeeccc
Confidence 479999999999999999999765421 222222110 0111111111 112222 25799999999
Q ss_pred cCC-----------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703 420 KMS-----------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF 486 (720)
Q Consensus 420 km~-----------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF 486 (720)
.+. .+.|-.++|.+.|- +|...+ .+.-+|.|+|... .|+++|++ |.
T Consensus 251 sigs~r~e~~~ggdsevqrtmlellnql------dgfeat--knikvimatnrid-------------ild~allrpgri 309 (404)
T KOG0728|consen 251 SIGSSRVESGSGGDSEVQRTMLELLNQL------DGFEAT--KNIKVIMATNRID-------------ILDPALLRPGRI 309 (404)
T ss_pred ccccccccCCCCccHHHHHHHHHHHHhc------cccccc--cceEEEEeccccc-------------cccHhhcCCCcc
Confidence 873 34577888888753 344333 3467889999765 58899988 99
Q ss_pred eeEEEecCCChHHHHHHHHhh
Q psy17703 487 DLIFLLLDPQSEQFDARLARH 507 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la~~ 507 (720)
|-.+.+++|..+.+...+.-|
T Consensus 310 drkiefp~p~e~ar~~ilkih 330 (404)
T KOG0728|consen 310 DRKIEFPPPNEEARLDILKIH 330 (404)
T ss_pred cccccCCCCCHHHHHHHHHHh
Confidence 999999988777665555543
No 175
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=9.3e-07 Score=101.95 Aligned_cols=182 Identities=14% Similarity=0.156 Sum_probs=103.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCccc----cC-----------Ccccccccccee-ecCccccce----eeecceee
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYT----SG-----------KGSSAVGLTAYI-TKDPETRQM----VLQTGALV 406 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~----~g-----------~~ss~~glta~~-~~~~~~~~~----~~~~G~l~ 406 (720)
.+||+||||+|||++++.+++.+...... +| .......+.++. ..-....+. ...| .
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p---~ 116 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPP---A 116 (563)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhch---h
Confidence 38999999999999999999977432100 00 000000000000 000000000 0111 1
Q ss_pred ecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703 407 LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF 486 (720)
Q Consensus 407 lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF 486 (720)
.++..+++|||++.|+...+++|+..||+- |..+.+|.+++... .++++|.||+
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEep-------------p~~~vfI~~tte~~-------------kL~~tI~SRc 170 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEP-------------PPYIVFIFATTEVH-------------KLPATIKSRC 170 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccC-------------CCCEEEEEecCChH-------------HhHHHHHHhc
Confidence 345679999999999999999999999852 23444544443211 4889999999
Q ss_pred eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703 487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL 566 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl 566 (720)
. .+.+..++.++... ++....+.-.-.+++++.+.|+... ..+.|.+.+++.-
T Consensus 171 ~-~~~f~~l~~~el~~-------------~L~~i~~~egi~id~eAl~lLa~~s-------------~GdlR~alslLdk 223 (563)
T PRK06647 171 Q-HFNFRLLSLEKIYN-------------MLKKVCLEDQIKYEDEALKWIAYKS-------------TGSVRDAYTLFDQ 223 (563)
T ss_pred e-EEEecCCCHHHHHH-------------HHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHH
Confidence 7 56777665554332 2222222234567888888887432 1234666666543
Q ss_pred HHHHHHHcCCCCCCHHhHHHHH
Q psy17703 567 SEAHAKMRYSETVEVQDVDEAW 588 (720)
Q Consensus 567 a~A~A~l~~~~~V~~~Dv~~Ai 588 (720)
..+.+ ...++.+++..++
T Consensus 224 lis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 224 VVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHhhc----CCCCCHHHHHHHh
Confidence 22221 2468888888765
No 176
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.57 E-value=1.4e-07 Score=102.96 Aligned_cols=139 Identities=23% Similarity=0.372 Sum_probs=94.5
Q ss_pred cCCceeeccccccCChH------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccc
Q psy17703 408 ADSGVCCIDEFDKMSDT------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDN 475 (720)
Q Consensus 408 ad~gI~~IDEidkm~~~------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~ 475 (720)
+..||+|||||||+... .|.+|+..||--++++ |.|..-+ .+..+||+.- |...+ .
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k~~~v~T--~~ILFI~~GA-----F~~~k----p 313 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-KYGMVKT--DHILFIAAGA-----FQLAK----P 313 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-cceeEEC--CceeEEecCC-----cCCCC----h
Confidence 57899999999998642 5889999999888776 4432222 3456666542 22221 2
Q ss_pred cCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHH-hhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcc
Q psy17703 476 IRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQ-EHLSPTLSEEASQRLIQTYVDMRKLGAGRGRIS 554 (720)
Q Consensus 476 ~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar-~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~ 554 (720)
-+|-|.|.-||.+++.+.+...++..+.|..- ...+++.|.+.-+ ..+.-.++++|.+.|++...++.....+ +.
T Consensus 314 ~DlIPEl~GR~Pi~v~L~~L~~edL~rILteP-~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~---iG 389 (441)
T TIGR00390 314 SDLIPELQGRFPIRVELQALTTDDFERILTEP-KNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTEN---IG 389 (441)
T ss_pred hhccHHHhCccceEEECCCCCHHHHHHHhcCC-hhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccc---cc
Confidence 25789999999999999999888877666532 2357788876655 3466788999999998887664332211 22
Q ss_pred cCHHHHHHHH
Q psy17703 555 AYPRQLESLI 564 (720)
Q Consensus 555 ~t~R~le~li 564 (720)
+|.|.+++
T Consensus 390 --AR~Lrtil 397 (441)
T TIGR00390 390 --ARRLHTVL 397 (441)
T ss_pred --hhhHHHHH
Confidence 37776654
No 177
>KOG0733|consensus
Probab=98.57 E-value=6.5e-08 Score=107.36 Aligned_cols=125 Identities=26% Similarity=0.351 Sum_probs=74.3
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcccc----ccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSA----VGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~----~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
--|||+||||||||.||+++|+.+.-. |.+-+|... +|..--.+ ++...++-+ +...|+|+||+|.|
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~N-FisVKGPELlNkYVGESErAV-----R~vFqRAR~---saPCVIFFDEiDaL 616 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGAN-FISVKGPELLNKYVGESERAV-----RQVFQRARA---SAPCVIFFDEIDAL 616 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccCc-eEeecCHHHHHHHhhhHHHHH-----HHHHHHhhc---CCCeEEEecchhhc
Confidence 479999999999999999999876432 222222111 11110000 111111211 23579999999998
Q ss_pred ChH-----------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--ccee
Q psy17703 422 SDT-----------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDL 488 (720)
Q Consensus 422 ~~~-----------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdl 488 (720)
-+. ..+.|+.-|+ |... ...+.||||+|.+. .++||+|+ |||-
T Consensus 617 ~p~R~~~~s~~s~RvvNqLLtElD---------Gl~~--R~gV~viaATNRPD-------------iIDpAiLRPGRlDk 672 (802)
T KOG0733|consen 617 VPRRSDEGSSVSSRVVNQLLTELD---------GLEE--RRGVYVIAATNRPD-------------IIDPAILRPGRLDK 672 (802)
T ss_pred CcccCCCCchhHHHHHHHHHHHhc---------cccc--ccceEEEeecCCCc-------------ccchhhcCCCccCc
Confidence 642 2334444442 3222 23578999999776 58899998 9996
Q ss_pred EEEecCCChHHHHHH
Q psy17703 489 IFLLLDPQSEQFDAR 503 (720)
Q Consensus 489 i~~l~d~~~~~~d~~ 503 (720)
+..+..|..+++..+
T Consensus 673 ~LyV~lPn~~eR~~I 687 (802)
T KOG0733|consen 673 LLYVGLPNAEERVAI 687 (802)
T ss_pred eeeecCCCHHHHHHH
Confidence 655555555544433
No 178
>PRK09087 hypothetical protein; Validated
Probab=98.57 E-value=4.6e-07 Score=92.88 Aligned_cols=175 Identities=15% Similarity=0.128 Sum_probs=101.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHH
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTT 425 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~ 425 (720)
-.++|+|++|+|||.|++++++... ..|.+.. .... ..+.-...++++|||++.++. .
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~-~~~i~~~--------------~~~~------~~~~~~~~~~l~iDDi~~~~~-~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD-ALLIHPN--------------EIGS------DAANAAAEGPVLIEDIDAGGF-D 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC-CEEecHH--------------Hcch------HHHHhhhcCeEEEECCCCCCC-C
Confidence 3499999999999999998886431 1111110 0000 000011236899999998753 3
Q ss_pred HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCChHHHHHH
Q psy17703 426 RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQSEQFDAR 503 (720)
Q Consensus 426 ~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~~~~~d~~ 503 (720)
+..|.+.+.... ..+..+|-|++.....|.. ..+.|.|||. +++.+..|.++.....
T Consensus 103 ~~~lf~l~n~~~------------~~g~~ilits~~~p~~~~~---------~~~dL~SRl~~gl~~~l~~pd~e~~~~i 161 (226)
T PRK09087 103 ETGLFHLINSVR------------QAGTSLLMTSRLWPSSWNV---------KLPDLKSRLKAATVVEIGEPDDALLSQV 161 (226)
T ss_pred HHHHHHHHHHHH------------hCCCeEEEECCCChHHhcc---------ccccHHHHHhCCceeecCCCCHHHHHHH
Confidence 455666553211 1123345555533333321 3578999997 7888888877655444
Q ss_pred HHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHh
Q psy17703 504 LARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQD 583 (720)
Q Consensus 504 la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~D 583 (720)
+.+ .-+...-.+++++.+.|..... -+.|.++.++.--.+.|.... ..+|...
T Consensus 162 L~~-------------~~~~~~~~l~~ev~~~La~~~~-------------r~~~~l~~~l~~L~~~~~~~~-~~it~~~ 214 (226)
T PRK09087 162 IFK-------------LFADRQLYVDPHVVYYLVSRME-------------RSLFAAQTIVDRLDRLALERK-SRITRAL 214 (226)
T ss_pred HHH-------------HHHHcCCCCCHHHHHHHHHHhh-------------hhHHHHHHHHHHHHHHHHHhC-CCCCHHH
Confidence 332 1122356789999999986542 234666665544444454444 4588877
Q ss_pred HHHHHHH
Q psy17703 584 VDEAWRL 590 (720)
Q Consensus 584 v~~Ai~l 590 (720)
+++++..
T Consensus 215 ~~~~l~~ 221 (226)
T PRK09087 215 AAEVLNE 221 (226)
T ss_pred HHHHHHh
Confidence 7777654
No 179
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.56 E-value=8.2e-07 Score=98.73 Aligned_cols=202 Identities=15% Similarity=0.165 Sum_probs=111.3
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCC------CccccCCccccc-ccc----ceeec-Cccccceeee------cceeee
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPR------SQYTSGKGSSAV-GLT----AYITK-DPETRQMVLQ------TGALVL 407 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr------~~~~~g~~ss~~-glt----a~~~~-~~~~~~~~~~------~G~l~l 407 (720)
.+++++|+||||||++++.+++.+.. .+|..+...... .+. ..+.. ......+... ...+..
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDE 135 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999886521 122222211100 000 00000 0000000000 000000
Q ss_pred c-CCceeeccccccCC----hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhh
Q psy17703 408 A-DSGVCCIDEFDKMS----DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTL 482 (720)
Q Consensus 408 a-d~gI~~IDEidkm~----~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aL 482 (720)
. ..-+++|||+|.+. .+....|.+.+++. -..++++|+++|+..-. + .+.+.+
T Consensus 136 ~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~------------~~~~v~vI~i~~~~~~~--------~--~l~~~~ 193 (394)
T PRK00411 136 RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY------------PGARIGVIGISSDLTFL--------Y--ILDPRV 193 (394)
T ss_pred cCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc------------CCCeEEEEEEECCcchh--------h--hcCHHH
Confidence 0 12478999999986 22233333333321 01267889999865311 1 266778
Q ss_pred hccce-eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhc-CCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHH
Q psy17703 483 LSRFD-LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHL-SPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQL 560 (720)
Q Consensus 483 lsRFd-li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~-~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~l 560 (720)
.+||. ..+.+.+...++....+. .++..+ . ...+++++.+.+.+..... ....|.+
T Consensus 194 ~s~~~~~~i~f~py~~~e~~~il~---------~r~~~~---~~~~~~~~~~l~~i~~~~~~~----------~Gd~r~a 251 (394)
T PRK00411 194 KSVFRPEEIYFPPYTADEIFDILK---------DRVEEG---FYPGVVDDEVLDLIADLTARE----------HGDARVA 251 (394)
T ss_pred HhcCCcceeecCCCCHHHHHHHHH---------HHHHhh---cccCCCCHhHHHHHHHHHHHh----------cCcHHHH
Confidence 88885 345565555554433333 222111 2 2357888888877654311 1235888
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703 561 ESLIRLSEAHAKMRYSETVEVQDVDEAWRLH 591 (720)
Q Consensus 561 e~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~ 591 (720)
..+++.|...|.-+.+..|+.+|+.+|+.-+
T Consensus 252 ~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 252 IDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 8888888888888888999999999998865
No 180
>KOG0991|consensus
Probab=98.56 E-value=1.4e-07 Score=93.74 Aligned_cols=109 Identities=21% Similarity=0.370 Sum_probs=67.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccC----CccccccccceeecCcc----ccceeeecceeeecCCceeeccc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSG----KGSSAVGLTAYITKDPE----TRQMVLQTGALVLADSGVCCIDE 417 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g----~~ss~~glta~~~~~~~----~~~~~~~~G~l~lad~gI~~IDE 417 (720)
-|+++.||||||||+-+..+|+.+-...|-.+ +.|..-|.. ++++.. .....+.+|. -.|+++||
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGID--vVRn~IK~FAQ~kv~lp~gr-----hKIiILDE 121 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGID--VVRNKIKMFAQKKVTLPPGR-----HKIIILDE 121 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccH--HHHHHHHHHHHhhccCCCCc-----eeEEEeec
Confidence 49999999999999999999886532222111 111111111 111110 0111222332 46999999
Q ss_pred cccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703 418 FDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD 487 (720)
Q Consensus 418 idkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd 487 (720)
.|.|....|.+|++.||-.+-+ +.+.-|+|... ++-+|+.||+.
T Consensus 122 ADSMT~gAQQAlRRtMEiyS~t-------------tRFalaCN~s~-------------KIiEPIQSRCA 165 (333)
T KOG0991|consen 122 ADSMTAGAQQALRRTMEIYSNT-------------TRFALACNQSE-------------KIIEPIQSRCA 165 (333)
T ss_pred cchhhhHHHHHHHHHHHHHccc-------------chhhhhhcchh-------------hhhhhHHhhhH
Confidence 9999999999999999954322 34555667443 46678888886
No 181
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.56 E-value=6.4e-07 Score=104.25 Aligned_cols=134 Identities=17% Similarity=0.241 Sum_probs=86.6
Q ss_pred eeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE-E
Q psy17703 412 VCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI-F 490 (720)
Q Consensus 412 I~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli-~ 490 (720)
|++|||||.+....+..|+.+++.-. ...+++.+||.+|+..-. + .|.+.+.+||..- +
T Consensus 872 IIILDEID~L~kK~QDVLYnLFR~~~----------~s~SKLiLIGISNdlDLp--------e--rLdPRLRSRLg~eeI 931 (1164)
T PTZ00112 872 ILIIDEIDYLITKTQKVLFTLFDWPT----------KINSKLVLIAISNTMDLP--------E--RLIPRCRSRLAFGRL 931 (1164)
T ss_pred EEEeehHhhhCccHHHHHHHHHHHhh----------ccCCeEEEEEecCchhcc--------h--hhhhhhhhccccccc
Confidence 79999999998877888888886321 113568899999965311 1 3567888998743 4
Q ss_pred EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703 491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH 570 (720)
Q Consensus 491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~ 570 (720)
.+.+...+++..+|. .++.. ....+++++.+.+++.-. . .....|....++|.|-..
T Consensus 932 vF~PYTaEQL~dILk---------~RAe~----A~gVLdDdAIELIArkVA------q----~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 932 VFSPYKGDEIEKIIK---------ERLEN----CKEIIDHTAIQLCARKVA------N----VSGDIRKALQICRKAFEN 988 (1164)
T ss_pred cCCCCCHHHHHHHHH---------HHHHh----CCCCCCHHHHHHHHHhhh------h----cCCHHHHHHHHHHHHHhh
Confidence 445555554443333 22222 234688999888875321 1 112347777777776554
Q ss_pred HHHcCCCCCCHHhHHHHHHHH
Q psy17703 571 AKMRYSETVEVQDVDEAWRLH 591 (720)
Q Consensus 571 A~l~~~~~V~~~Dv~~Ai~l~ 591 (720)
+....|+.+|+.+|+..+
T Consensus 989 ---kegskVT~eHVrkAleei 1006 (1164)
T PTZ00112 989 ---KRGQKIVPRDITEATNQL 1006 (1164)
T ss_pred ---cCCCccCHHHHHHHHHHH
Confidence 345689999999998644
No 182
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=1.7e-06 Score=98.17 Aligned_cols=185 Identities=19% Similarity=0.248 Sum_probs=103.5
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCCCCcccc----C-----------CccccccccceeecCcc-ccceeeecce-eeecCC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVPRSQYTS----G-----------KGSSAVGLTAYITKDPE-TRQMVLQTGA-LVLADS 410 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~pr~~~~~----g-----------~~ss~~glta~~~~~~~-~~~~~~~~G~-l~lad~ 410 (720)
.||+||||+|||++++.+++.+....-.. + .......+.++...... .+...-.... -..+..
T Consensus 41 yLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~ 120 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKY 120 (486)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCe
Confidence 57899999999999999999775210000 0 00000000000000000 0000000000 012456
Q ss_pred ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703 411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF 490 (720)
Q Consensus 411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~ 490 (720)
.|++|||++.|+.+.+++|+..||+. |..+.+|.++|... .+++++.+|+. .+
T Consensus 121 KVvIIDEad~Lt~~a~naLLk~LEep-------------p~~~v~Il~tt~~~-------------kl~~tI~SRc~-~i 173 (486)
T PRK14953 121 KVYIIDEAHMLTKEAFNALLKTLEEP-------------PPRTIFILCTTEYD-------------KIPPTILSRCQ-RF 173 (486)
T ss_pred eEEEEEChhhcCHHHHHHHHHHHhcC-------------CCCeEEEEEECCHH-------------HHHHHHHHhce-EE
Confidence 79999999999999999999999853 22333443443111 37889999996 67
Q ss_pred EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703 491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH 570 (720)
Q Consensus 491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~ 570 (720)
.+.+++.++.. +|+...-+...-.+++++.+.+.+.. ..+.|.+.+++.-+.+.
T Consensus 174 ~f~~ls~~el~-------------~~L~~i~k~egi~id~~al~~La~~s-------------~G~lr~al~~Ldkl~~~ 227 (486)
T PRK14953 174 IFSKPTKEQIK-------------EYLKRICNEEKIEYEEKALDLLAQAS-------------EGGMRDAASLLDQASTY 227 (486)
T ss_pred EcCCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHh
Confidence 77766555433 33332222224467788888777432 12347777766544333
Q ss_pred HHHcCCCCCCHHhHHHHHH
Q psy17703 571 AKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 571 A~l~~~~~V~~~Dv~~Ai~ 589 (720)
....+|.+++.+++.
T Consensus 228 ----~~~~It~~~V~~~lg 242 (486)
T PRK14953 228 ----GEGKVTIKVVEEFLG 242 (486)
T ss_pred ----cCCCcCHHHHHHHhC
Confidence 245688888888653
No 183
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.53 E-value=1.8e-06 Score=93.02 Aligned_cols=152 Identities=18% Similarity=0.248 Sum_probs=85.6
Q ss_pred cEEE-EcCCCCHHHHHHHHHHhhCCCCc-cccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC-Ch
Q psy17703 347 NILL-CGDPGTSKSQLLSYVYDLVPRSQ-YTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM-SD 423 (720)
Q Consensus 347 ~vLL-~G~PGtGKS~ll~~va~~~pr~~-~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm-~~ 423 (720)
|++| +||||+|||++++++++.....+ +..+... . ....++.. ..+. .... ..+..++++|||++.+ ..
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~---~--~~~i~~~l-~~~~-~~~~-~~~~~~vliiDe~d~l~~~ 115 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDC---R--IDFVRNRL-TRFA-STVS-LTGGGKVIIIDEFDRLGLA 115 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcc---c--HHHHHHHH-HHHH-Hhhc-ccCCCeEEEEECcccccCH
Confidence 5555 89999999999999998653221 2111110 0 00000000 0000 0000 1235689999999999 66
Q ss_pred HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHH
Q psy17703 424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDAR 503 (720)
Q Consensus 424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~ 503 (720)
+.+..|...||+. +.++.+|.++|... .+++++.+||. .+.+..|+.++....
T Consensus 116 ~~~~~L~~~le~~-------------~~~~~~Ilt~n~~~-------------~l~~~l~sR~~-~i~~~~p~~~~~~~i 168 (316)
T PHA02544 116 DAQRHLRSFMEAY-------------SKNCSFIITANNKN-------------GIIEPLRSRCR-VIDFGVPTKEEQIEM 168 (316)
T ss_pred HHHHHHHHHHHhc-------------CCCceEEEEcCChh-------------hchHHHHhhce-EEEeCCCCHHHHHHH
Confidence 6788888888752 34567788888432 47899999997 556655555443322
Q ss_pred HHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703 504 LARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT 539 (720)
Q Consensus 504 la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~ 539 (720)
+.. .+......+.. -...+++++...+.+.
T Consensus 169 l~~-----~~~~~~~~~~~-~~~~i~~~al~~l~~~ 198 (316)
T PHA02544 169 MKQ-----MIVRCKGILEA-EGVEVDMKVLAALVKK 198 (316)
T ss_pred HHH-----HHHHHHHHHHh-cCCCCCHHHHHHHHHh
Confidence 221 11111111111 2445778887777643
No 184
>PRK04132 replication factor C small subunit; Provisional
Probab=98.53 E-value=7.7e-07 Score=105.80 Aligned_cols=179 Identities=15% Similarity=0.213 Sum_probs=104.2
Q ss_pred ccEEEEc--CCCCHHHHHHHHHHhhCCCC----ccccCCccccccccceeecCcccccee-eecceeeecCCceeecccc
Q psy17703 346 INILLCG--DPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTAYITKDPETRQMV-LQTGALVLADSGVCCIDEF 418 (720)
Q Consensus 346 i~vLL~G--~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta~~~~~~~~~~~~-~~~G~l~lad~gI~~IDEi 418 (720)
+|-+..| |.+.|||++|+++++.+... -+..-..++..|.. .+++.. ..+. ..+ +.-+...|++|||+
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid--~IR~iI-k~~a~~~~--~~~~~~KVvIIDEa 639 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGIN--VIREKV-KEFARTKP--IGGASFKIIFLDEA 639 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHH--HHHHHH-HHHHhcCC--cCCCCCEEEEEECc
Confidence 5667778 89999999999999876211 11111122211111 111100 0000 001 00012369999999
Q ss_pred ccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChH
Q psy17703 419 DKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSE 498 (720)
Q Consensus 419 dkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~ 498 (720)
|.|+.+.|++|+..||+- +..+.+|.++|+.. .++++|.||+. ++.+..++++
T Consensus 640 D~Lt~~AQnALLk~lEep-------------~~~~~FILi~N~~~-------------kIi~tIrSRC~-~i~F~~ls~~ 692 (846)
T PRK04132 640 DALTQDAQQALRRTMEMF-------------SSNVRFILSCNYSS-------------KIIEPIQSRCA-IFRFRPLRDE 692 (846)
T ss_pred ccCCHHHHHHHHHHhhCC-------------CCCeEEEEEeCChh-------------hCchHHhhhce-EEeCCCCCHH
Confidence 999999999999999952 23466777888654 58899999994 7888888766
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCC
Q psy17703 499 QFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSET 578 (720)
Q Consensus 499 ~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~ 578 (720)
+....+. ...+.-...+++++...++... . ...|....++..+.+ . ...
T Consensus 693 ~i~~~L~-------------~I~~~Egi~i~~e~L~~Ia~~s---------~----GDlR~AIn~Lq~~~~---~--~~~ 741 (846)
T PRK04132 693 DIAKRLR-------------YIAENEGLELTEEGLQAILYIA---------E----GDMRRAINILQAAAA---L--DDK 741 (846)
T ss_pred HHHHHHH-------------HHHHhcCCCCCHHHHHHHHHHc---------C----CCHHHHHHHHHHHHH---h--cCC
Confidence 5433322 2222223446777777776331 1 223655555543322 2 246
Q ss_pred CCHHhHHHH
Q psy17703 579 VEVQDVDEA 587 (720)
Q Consensus 579 V~~~Dv~~A 587 (720)
++.+++..+
T Consensus 742 It~~~V~~~ 750 (846)
T PRK04132 742 ITDENVFLV 750 (846)
T ss_pred CCHHHHHHH
Confidence 787777665
No 185
>KOG0727|consensus
Probab=98.52 E-value=5.2e-07 Score=90.53 Aligned_cols=186 Identities=23% Similarity=0.292 Sum_probs=105.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCC-ccccCCcccc--ccccceeecCccccceeeecceeeec---CCceeeccccc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRS-QYTSGKGSSA--VGLTAYITKDPETRQMVLQTGALVLA---DSGVCCIDEFD 419 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g~~ss~--~glta~~~~~~~~~~~~~~~G~l~la---d~gI~~IDEid 419 (720)
-.|||+||||||||+|++++++..... +...|.+.-. .|...-+++| .+-+| ...|+||||+|
T Consensus 190 rgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrd-----------vfrlakenapsiifideid 258 (408)
T KOG0727|consen 190 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRD-----------VFRLAKENAPSIIFIDEID 258 (408)
T ss_pred cceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHH-----------HHHHHhccCCcEEEeehhh
Confidence 379999999999999999999754322 1111111110 0110011111 01111 24699999998
Q ss_pred cCC-----------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703 420 KMS-----------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF 486 (720)
Q Consensus 420 km~-----------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF 486 (720)
.+. .+.|-.|.|.+.|- .|... .+++-+|.|+|... .|.|+||+ |.
T Consensus 259 aiatkrfdaqtgadrevqril~ellnqm------dgfdq--~~nvkvimatnrad-------------tldpallrpgrl 317 (408)
T KOG0727|consen 259 AIATKRFDAQTGADREVQRILIELLNQM------DGFDQ--TTNVKVIMATNRAD-------------TLDPALLRPGRL 317 (408)
T ss_pred hHhhhhccccccccHHHHHHHHHHHHhc------cCcCc--ccceEEEEecCccc-------------ccCHhhcCCccc
Confidence 753 44566788887653 23222 24567899999654 47889988 88
Q ss_pred eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703 487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL 566 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl 566 (720)
|-.+.++.|+..... .+-..+ -. +-.+++++- +.+ |+ .| +-.+|.-.+.++..-
T Consensus 318 drkiefplpdrrqkr-lvf~ti------------ts--km~ls~~vd--le~-~v-~r-------pdkis~adi~aicqe 371 (408)
T KOG0727|consen 318 DRKIEFPLPDRRQKR-LVFSTI------------TS--KMNLSDEVD--LED-LV-AR-------PDKISGADINAICQE 371 (408)
T ss_pred cccccCCCCchhhhh-hhHHhh------------hh--cccCCcccC--HHH-Hh-cC-------ccccchhhHHHHHHH
Confidence 888888755433221 111000 00 112222221 111 10 11 112344677788888
Q ss_pred HHHHHHHcCCCCCCHHhHHHHHH
Q psy17703 567 SEAHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 567 a~A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
|--+|.-.-|-.|...|+++|-.
T Consensus 372 agm~avr~nryvvl~kd~e~ay~ 394 (408)
T KOG0727|consen 372 AGMLAVRENRYVVLQKDFEKAYK 394 (408)
T ss_pred HhHHHHHhcceeeeHHHHHHHHH
Confidence 88888888888999999999843
No 186
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=2.4e-06 Score=99.01 Aligned_cols=185 Identities=20% Similarity=0.214 Sum_probs=101.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCcc-cc-CCcccccc------------------cccee-ecCcccccee--eec
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQY-TS-GKGSSAVG------------------LTAYI-TKDPETRQMV--LQT 402 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~-g~~ss~~g------------------lta~~-~~~~~~~~~~--~~~ 402 (720)
..+||+||||+|||++++.+++.+..... .. +......| +.+.- ..-...++.. .+.
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~ 126 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRY 126 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHh
Confidence 35999999999999999999997642110 00 00000000 00000 0000000000 000
Q ss_pred ceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhh
Q psy17703 403 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTL 482 (720)
Q Consensus 403 G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aL 482 (720)
.. +.++..|++|||++.|+....++|+..||+- +..+.+|.++|... ++++++
T Consensus 127 ~P-~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP-------------p~~~~fIl~tte~~-------------kll~tI 179 (598)
T PRK09111 127 RP-VSARYKVYIIDEVHMLSTAAFNALLKTLEEP-------------PPHVKFIFATTEIR-------------KVPVTV 179 (598)
T ss_pred ch-hcCCcEEEEEEChHhCCHHHHHHHHHHHHhC-------------CCCeEEEEEeCChh-------------hhhHHH
Confidence 11 2456789999999999999999999999862 33444554554221 477889
Q ss_pred hccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHH
Q psy17703 483 LSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLES 562 (720)
Q Consensus 483 lsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~ 562 (720)
+||+. .|.+..++.++....+. ..-+.-.-.+++++.+.|.... ..++|.+.+
T Consensus 180 ~SRcq-~~~f~~l~~~el~~~L~-------------~i~~kegi~i~~eAl~lIa~~a-------------~Gdlr~al~ 232 (598)
T PRK09111 180 LSRCQ-RFDLRRIEADVLAAHLS-------------RIAAKEGVEVEDEALALIARAA-------------EGSVRDGLS 232 (598)
T ss_pred Hhhee-EEEecCCCHHHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHH
Confidence 99995 77787776654432222 2212234557777777666431 123455555
Q ss_pred HHHHHHHHHHHcCCCCCCHHhHHHHH
Q psy17703 563 LIRLSEAHAKMRYSETVEVQDVDEAW 588 (720)
Q Consensus 563 lirla~A~A~l~~~~~V~~~Dv~~Ai 588 (720)
++.-+.++ +...|+.+|+...+
T Consensus 233 ~Ldkli~~----g~g~It~e~V~~ll 254 (598)
T PRK09111 233 LLDQAIAH----GAGEVTAEAVRDML 254 (598)
T ss_pred HHHHHHhh----cCCCcCHHHHHHHh
Confidence 54322222 23456666666543
No 187
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.50 E-value=5.8e-07 Score=101.00 Aligned_cols=189 Identities=18% Similarity=0.229 Sum_probs=106.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC----CCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP----RSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p----r~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
-+++|+|+||+|||.|++++++.+. +..|.+...... .+... .+......+. . ....-.+++|||++.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~-~~~~~-l~~~~~~~f~----~-~~~~~dvLiIDDiq~l 214 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE-HLVSA-IRSGEMQRFR----Q-FYRNVDALFIEDIEVF 214 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH-HHHHH-HhcchHHHHH----H-HcccCCEEEEcchhhh
Confidence 3699999999999999999998653 122222110000 00000 0000000000 0 0123569999999998
Q ss_pred Ch--HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCCh
Q psy17703 422 SD--TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQS 497 (720)
Q Consensus 422 ~~--~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~~ 497 (720)
.. ..+..++..+....- .| -.+|.++|..+.. -..+.+.|.|||. +++.+.+|..
T Consensus 215 ~~k~~~qeelf~l~N~l~~----~~--------k~IIlts~~~p~~---------l~~l~~rL~SR~~~Gl~~~l~~pd~ 273 (445)
T PRK12422 215 SGKGATQEEFFHTFNSLHT----EG--------KLIVISSTCAPQD---------LKAMEERLISRFEWGIAIPLHPLTK 273 (445)
T ss_pred cCChhhHHHHHHHHHHHHH----CC--------CcEEEecCCCHHH---------HhhhHHHHHhhhcCCeEEecCCCCH
Confidence 64 345566665542210 11 1344444422211 1147799999996 8888888876
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH-HH--HHHHHHc
Q psy17703 498 EQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR-LS--EAHAKMR 574 (720)
Q Consensus 498 ~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir-la--~A~A~l~ 574 (720)
+.....|. ...+.....+++++.+.|...+. ...|.|+..+. ++ .|.+.+.
T Consensus 274 e~r~~iL~-------------~k~~~~~~~l~~evl~~la~~~~-------------~dir~L~g~l~~l~~~~a~~~~~ 327 (445)
T PRK12422 274 EGLRSFLE-------------RKAEALSIRIEETALDFLIEALS-------------SNVKSLLHALTLLAKRVAYKKLS 327 (445)
T ss_pred HHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHhcC-------------CCHHHHHHHHHHHHHHHHHHHhh
Confidence 55433322 22222356789999998875432 23477876554 54 4667666
Q ss_pred CCCCCCHHhHHHHHH
Q psy17703 575 YSETVEVQDVDEAWR 589 (720)
Q Consensus 575 ~~~~V~~~Dv~~Ai~ 589 (720)
++ .++.+++++++.
T Consensus 328 ~~-~i~~~~~~~~l~ 341 (445)
T PRK12422 328 HQ-LLYVDDIKALLH 341 (445)
T ss_pred CC-CCCHHHHHHHHH
Confidence 53 578888887765
No 188
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.7e-06 Score=98.53 Aligned_cols=188 Identities=20% Similarity=0.242 Sum_probs=126.3
Q ss_pred ccccccceeecCcccc------ceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeee-----ccCe---E
Q psy17703 381 SAVGLTAYITKDPETR------QMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIA-----KAGI---I 446 (720)
Q Consensus 381 s~~glta~~~~~~~~~------~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~-----k~g~---~ 446 (720)
....|.+.+..++..| ...++||++-.||+|++||||++.+....+..++.+|+++...+. ..|. .
T Consensus 191 ~~~~LlG~Vr~~~~qG~l~~~~~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~ 270 (647)
T COG1067 191 IADQLLGSVRHDPYQGGLGTTGHIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRP 270 (647)
T ss_pred ChhhcceeEEEcCCCCccCCCCcccccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCC
Confidence 3344445554444433 456899999999999999999999998888899999877643321 1122 2
Q ss_pred EeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce---eEEEecCCC--hHHHHHHHHhhcchhHHHHHHHHHH
Q psy17703 447 CQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD---LIFLLLDPQ--SEQFDARLARHLDITVLRDYIAYAQ 521 (720)
Q Consensus 447 ~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd---li~~l~d~~--~~~~d~~la~~i~~~~l~~~i~~ar 521 (720)
-..|.++-++++.|+..-. .|-+++.+|.+ ....+.++. .++...++. ..|+....
T Consensus 271 e~vP~d~klI~~Gn~~~l~-----------~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~--------~~~~q~v~ 331 (647)
T COG1067 271 ESVPLDLKLILAGNREDLE-----------DLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLV--------QFYVQELA 331 (647)
T ss_pred CCcccceEEEeeCCHHHHH-----------hhcccCHHHHhhcceEEEEcCCCCCChHHHHHHH--------HHHHHHHH
Confidence 2456788889888864311 23344444443 334554332 333333333 22333333
Q ss_pred hh-cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703 522 EH-LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL 590 (720)
Q Consensus 522 ~~-~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l 590 (720)
+. --|.++.+|.+.|.... ++.+...+.++..+|.+-.++|.|--.|..++++.++.+|+++|+..
T Consensus 332 ~d~~ip~~~~~Av~~li~~a---~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 332 RDGNIPHLDKDAVEELIREA---ARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred hcCCCCCCCHHHHHHHHHHH---HHhccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHh
Confidence 22 46788888888887543 33345567788899999999999999999999999999999999876
No 189
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=1.3e-06 Score=102.03 Aligned_cols=183 Identities=19% Similarity=0.241 Sum_probs=98.7
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCCCCccccCC-cc----ccccccceee-cCcc-------ccceeeeccee-eecCCcee
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVPRSQYTSGK-GS----SAVGLTAYIT-KDPE-------TRQMVLQTGAL-VLADSGVC 413 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~-~s----s~~glta~~~-~~~~-------~~~~~~~~G~l-~lad~gI~ 413 (720)
.||+||||+|||++|+.+++.+......... .. ...+....+. -+.. .++..-..... ..+...|+
T Consensus 43 YLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~ 122 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIY 122 (725)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEE
Confidence 6899999999999999999976432110000 00 0000000000 0000 00000000001 12356799
Q ss_pred eccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecc-cCCCCCCCCCcccccccCCChhhhccceeEEEe
Q psy17703 414 CIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAA-NPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLL 492 (720)
Q Consensus 414 ~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaa-Np~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l 492 (720)
+|||++.|+...+++|+..||+- |..+.+|.++ +|. .|+++++||+. ++.+
T Consensus 123 IIDEa~~LT~~A~NALLKtLEEP-------------P~~tifILaTte~~--------------KLl~TI~SRcq-~ieF 174 (725)
T PRK07133 123 IIDEVHMLSKSAFNALLKTLEEP-------------PKHVIFILATTEVH--------------KIPLTILSRVQ-RFNF 174 (725)
T ss_pred EEEChhhCCHHHHHHHHHHhhcC-------------CCceEEEEEcCChh--------------hhhHHHHhhce-eEEc
Confidence 99999999999999999999863 2334444444 332 58899999995 7788
Q ss_pred cCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703 493 LDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK 572 (720)
Q Consensus 493 ~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~ 572 (720)
..++.++....+. ..-....-.+++++.+.++... ..+.|.+..++.-..+.
T Consensus 175 ~~L~~eeI~~~L~-------------~il~kegI~id~eAl~~LA~lS-------------~GslR~AlslLekl~~y-- 226 (725)
T PRK07133 175 RRISEDEIVSRLE-------------FILEKENISYEKNALKLIAKLS-------------SGSLRDALSIAEQVSIF-- 226 (725)
T ss_pred cCCCHHHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHh--
Confidence 7776665433332 2111123455666666665331 12335555544432222
Q ss_pred HcCCCCCCHHhHHHHH
Q psy17703 573 MRYSETVEVQDVDEAW 588 (720)
Q Consensus 573 l~~~~~V~~~Dv~~Ai 588 (720)
. ...++.+++.+++
T Consensus 227 -~-~~~It~e~V~ell 240 (725)
T PRK07133 227 -G-NNKITLKNVEELF 240 (725)
T ss_pred -c-cCCCCHHHHHHHH
Confidence 1 2347777776653
No 190
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.48 E-value=5e-07 Score=102.23 Aligned_cols=189 Identities=19% Similarity=0.240 Sum_probs=106.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC------CccccCCccccccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR------SQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK 420 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr------~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk 420 (720)
+++|+|+||+|||.|++++++.+.. ..|.+..... ..+... .+......+. . .+..-.+++|||++.
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~-~~~~~~-~~~~~~~~~~---~--~~~~~dlLiiDDi~~ 222 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT-NDFVNA-LRNNTMEEFK---E--KYRSVDVLLIDDIQF 222 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-HHHHHH-HHcCcHHHHH---H--HHhcCCEEEEehhhh
Confidence 6999999999999999999986532 1121111000 000000 0000000000 0 011345899999998
Q ss_pred CChH--HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCC
Q psy17703 421 MSDT--TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQ 496 (720)
Q Consensus 421 m~~~--~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~ 496 (720)
+... .+..|+..++... ..| ...++++.+|.. .+. .+.+.|.|||. +++.+..|.
T Consensus 223 l~~~~~~~~~l~~~~n~l~----~~~-------~~iiits~~~p~-~l~---------~l~~~l~SRl~~gl~v~i~~pd 281 (450)
T PRK00149 223 LAGKERTQEEFFHTFNALH----EAG-------KQIVLTSDRPPK-ELP---------GLEERLRSRFEWGLTVDIEPPD 281 (450)
T ss_pred hcCCHHHHHHHHHHHHHHH----HCC-------CcEEEECCCCHH-HHH---------HHHHHHHhHhcCCeeEEecCCC
Confidence 7543 3455555543221 011 123444333221 111 26688999996 677887776
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCC
Q psy17703 497 SEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYS 576 (720)
Q Consensus 497 ~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~ 576 (720)
.+.....+. +. +. .....+++++.+.|++. +..+.|.|+.++.-..+.|.+..+
T Consensus 282 ~~~r~~il~---------~~---~~-~~~~~l~~e~l~~ia~~-------------~~~~~R~l~~~l~~l~~~~~~~~~ 335 (450)
T PRK00149 282 LETRIAILK---------KK---AE-EEGIDLPDEVLEFIAKN-------------ITSNVRELEGALNRLIAYASLTGK 335 (450)
T ss_pred HHHHHHHHH---------HH---HH-HcCCCCCHHHHHHHHcC-------------cCCCHHHHHHHHHHHHHHHHhhCC
Confidence 655433332 11 11 12557899999888743 234569999988877888877765
Q ss_pred CCCCHHhHHHHHHH
Q psy17703 577 ETVEVQDVDEAWRL 590 (720)
Q Consensus 577 ~~V~~~Dv~~Ai~l 590 (720)
.++.+.+++++.-
T Consensus 336 -~it~~~~~~~l~~ 348 (450)
T PRK00149 336 -PITLELAKEALKD 348 (450)
T ss_pred -CCCHHHHHHHHHH
Confidence 4888888888764
No 191
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=1.6e-06 Score=96.41 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=78.5
Q ss_pred ecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703 407 LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF 486 (720)
Q Consensus 407 lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF 486 (720)
.++..+++|||+++|+.+.++.|+..||+- +..+.+|.+++.. ..+.+++.+|+
T Consensus 125 ~~~~kvvIIdea~~l~~~~~~~LLk~LEep-------------~~~t~~Il~t~~~-------------~kl~~tl~sR~ 178 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAAFNAFLKTLEEP-------------PPHAIFIFATTEL-------------HKIPATIASRC 178 (397)
T ss_pred cCCeEEEEEeChhhCCHHHHHHHHHHHhcC-------------CCCeEEEEEeCCh-------------HHhHHHHHHHH
Confidence 346679999999999999999999999852 2233444444311 14778999999
Q ss_pred eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703 487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL 566 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl 566 (720)
. ++.+..++.++. .+++...-+.-...+++++.+.|...- ..+.|.+...+.-
T Consensus 179 ~-~v~f~~l~~~ei-------------~~~l~~~~~~~g~~i~~~al~~l~~~s-------------~g~lr~a~~~L~k 231 (397)
T PRK14955 179 Q-RFNFKRIPLEEI-------------QQQLQGICEAEGISVDADALQLIGRKA-------------QGSMRDAQSILDQ 231 (397)
T ss_pred H-HhhcCCCCHHHH-------------HHHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHH
Confidence 6 566666655443 333333222234568888888877432 1234666655544
Q ss_pred HHHHHHH-cCCCCCCHHhHHHHH
Q psy17703 567 SEAHAKM-RYSETVEVQDVDEAW 588 (720)
Q Consensus 567 a~A~A~l-~~~~~V~~~Dv~~Ai 588 (720)
..+.+.- .....|+.+|+.+++
T Consensus 232 l~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 232 VIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHhccccCCCCccCHHHHHHHH
Confidence 3333321 123578888887654
No 192
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=2.6e-06 Score=96.08 Aligned_cols=153 Identities=19% Similarity=0.192 Sum_probs=85.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCccc-----c-----------CCccccccccceeecC-ccccceeeecc-eeeec
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYT-----S-----------GKGSSAVGLTAYITKD-PETRQMVLQTG-ALVLA 408 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~-----~-----------g~~ss~~glta~~~~~-~~~~~~~~~~G-~l~la 408 (720)
.+||+||||+|||++++.+++.+...... + +.......+.+..... ...++..-... .-..+
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~ 120 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKS 120 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcC
Confidence 47899999999999999999976321100 0 0000000000000000 00000000000 00124
Q ss_pred CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703 409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL 488 (720)
Q Consensus 409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl 488 (720)
+..|++|||++.|+.+.+++|+..||+- +..+.+|.++|.. ..+.+++.+|+.
T Consensus 121 ~~kvvIIdead~lt~~~~n~LLk~lEep-------------~~~~~~Il~t~~~-------------~kl~~tI~sRc~- 173 (451)
T PRK06305 121 RYKIYIIDEVHMLTKEAFNSLLKTLEEP-------------PQHVKFFLATTEI-------------HKIPGTILSRCQ- 173 (451)
T ss_pred CCEEEEEecHHhhCHHHHHHHHHHhhcC-------------CCCceEEEEeCCh-------------HhcchHHHHhce-
Confidence 6779999999999999999999999862 2234455555422 147899999996
Q ss_pred EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT 539 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~ 539 (720)
.+.+..++.++....+.. .++ ...-.+++++.+.|...
T Consensus 174 ~v~f~~l~~~el~~~L~~------------~~~-~eg~~i~~~al~~L~~~ 211 (451)
T PRK06305 174 KMHLKRIPEETIIDKLAL------------IAK-QEGIETSREALLPIARA 211 (451)
T ss_pred EEeCCCCCHHHHHHHHHH------------HHH-HcCCCCCHHHHHHHHHH
Confidence 677777766544322221 122 12445777777777643
No 193
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.45 E-value=6.6e-07 Score=100.82 Aligned_cols=194 Identities=14% Similarity=0.256 Sum_probs=109.3
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCC------CccccCCccccccccceeecCccccceeeecceeeecCCceeeccccc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPR------SQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFD 419 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr------~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEid 419 (720)
-+++|+|++|+|||.|++++++.+.. ..|.+..... -.+..+. +... +.. +.-.-...+-.+++|||++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~-~~~~~~l-~~~~-~~~--~~~~~~~~~~dvLiIDDiq 216 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA-RKAVDIL-QKTH-KEI--EQFKNEICQNDVLIIDDVQ 216 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-HHHHHHH-HHhh-hHH--HHHHHHhccCCEEEEeccc
Confidence 36999999999999999999885421 1122111000 0000000 0000 000 0000001234689999999
Q ss_pred cCC--hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCC
Q psy17703 420 KMS--DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDP 495 (720)
Q Consensus 420 km~--~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~ 495 (720)
.+. +..++.|+.++....- . +-.+|.|+|-.+.. .-.+.+.|.|||. +++.+.+|
T Consensus 217 ~l~~k~~~~e~lf~l~N~~~~----~--------~k~iIltsd~~P~~---------l~~l~~rL~SR~~~Gl~~~L~~p 275 (450)
T PRK14087 217 FLSYKEKTNEIFFTIFNNFIE----N--------DKQLFFSSDKSPEL---------LNGFDNRLITRFNMGLSIAIQKL 275 (450)
T ss_pred cccCCHHHHHHHHHHHHHHHH----c--------CCcEEEECCCCHHH---------HhhccHHHHHHHhCCceeccCCc
Confidence 887 4566777777654321 1 11345555533211 1147799999996 77788888
Q ss_pred ChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcC
Q psy17703 496 QSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRY 575 (720)
Q Consensus 496 ~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~ 575 (720)
..++....|.++ +... .+...+++++.+.|.... ..++|.++.++.-..+.|.+..
T Consensus 276 d~e~r~~iL~~~---------~~~~--gl~~~l~~evl~~Ia~~~-------------~gd~R~L~gaL~~l~~~a~~~~ 331 (450)
T PRK14087 276 DNKTATAIIKKE---------IKNQ--NIKQEVTEEAINFISNYY-------------SDDVRKIKGSVSRLNFWSQQNP 331 (450)
T ss_pred CHHHHHHHHHHH---------HHhc--CCCCCCCHHHHHHHHHcc-------------CCCHHHHHHHHHHHHHHHhccc
Confidence 776654444322 1111 122368999998887542 3457999987754446666653
Q ss_pred C-CCCCHHhHHHHHH
Q psy17703 576 S-ETVEVQDVDEAWR 589 (720)
Q Consensus 576 ~-~~V~~~Dv~~Ai~ 589 (720)
. ..++.+.+.+++.
T Consensus 332 ~~~~it~~~v~~~l~ 346 (450)
T PRK14087 332 EEKIITIEIVSDLFR 346 (450)
T ss_pred CCCCCCHHHHHHHHh
Confidence 2 5688888887765
No 194
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.44 E-value=9.1e-07 Score=98.83 Aligned_cols=189 Identities=17% Similarity=0.215 Sum_probs=104.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCC------CccccCCccccccccceeecCccccceeeecceeeecCCceeeccccc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPR------SQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFD 419 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr------~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEid 419 (720)
-+++|+|+||+|||.|++++++.+-. ..|.+...... .+.... .+.....+. .. +....+++|||++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~-~~~~~~-~~~~~~~~~---~~--~~~~dlLiiDDi~ 209 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN-DFVNAL-RNNKMEEFK---EK--YRSVDLLLIDDIQ 209 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH-HHHHHH-HcCCHHHHH---HH--HHhCCEEEEehhh
Confidence 36899999999999999999986521 11221110000 000000 000000000 00 1234689999999
Q ss_pred cCChH--HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCC
Q psy17703 420 KMSDT--TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDP 495 (720)
Q Consensus 420 km~~~--~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~ 495 (720)
.+... .+..|+..++... .. +..++.++|-.+..+ -.+.+.|.|||. +.+.+..|
T Consensus 210 ~l~~~~~~~~~l~~~~n~~~----~~--------~~~iiits~~~p~~l---------~~l~~~l~SRl~~g~~v~i~~p 268 (405)
T TIGR00362 210 FLAGKERTQEEFFHTFNALH----EN--------GKQIVLTSDRPPKEL---------PGLEERLRSRFEWGLVVDIEPP 268 (405)
T ss_pred hhcCCHHHHHHHHHHHHHHH----HC--------CCCEEEecCCCHHHH---------hhhhhhhhhhccCCeEEEeCCC
Confidence 87543 4555666554321 01 112334444222111 126688999997 56777766
Q ss_pred ChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcC
Q psy17703 496 QSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRY 575 (720)
Q Consensus 496 ~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~ 575 (720)
..+.+...+. +. ++. ....+++++.+.|.+.+ ..+.|.|+.++.-..+.|.+..
T Consensus 269 d~~~r~~il~---------~~---~~~-~~~~l~~e~l~~ia~~~-------------~~~~r~l~~~l~~l~~~a~~~~ 322 (405)
T TIGR00362 269 DLETRLAILQ---------KK---AEE-EGLELPDEVLEFIAKNI-------------RSNVRELEGALNRLLAYASLTG 322 (405)
T ss_pred CHHHHHHHHH---------HH---HHH-cCCCCCHHHHHHHHHhc-------------CCCHHHHHHHHHHHHHHHHHhC
Confidence 6554433322 21 222 35678999988887543 2346999988876677777765
Q ss_pred CCCCCHHhHHHHHH
Q psy17703 576 SETVEVQDVDEAWR 589 (720)
Q Consensus 576 ~~~V~~~Dv~~Ai~ 589 (720)
..+|.+.+.+++.
T Consensus 323 -~~it~~~~~~~L~ 335 (405)
T TIGR00362 323 -KPITLELAKEALK 335 (405)
T ss_pred -CCCCHHHHHHHHH
Confidence 4588877777755
No 195
>PRK04195 replication factor C large subunit; Provisional
Probab=98.44 E-value=1.8e-06 Score=98.46 Aligned_cols=144 Identities=16% Similarity=0.160 Sum_probs=81.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCc-ccccee---eecceeeecCCceeecccccc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDP-ETRQMV---LQTGALVLADSGVCCIDEFDK 420 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~-~~~~~~---~~~G~l~lad~gI~~IDEidk 420 (720)
.-++||+||||+|||++++++++.+...+.. +.++-.+.. ...... .....+.-....+++|||+|.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ie---------lnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~ 109 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIE---------LNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDG 109 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEE---------EcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcc
Confidence 4589999999999999999999977432111 111100000 000000 000111102467999999999
Q ss_pred CCh----HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCCh-hhhccceeEEEecCC
Q psy17703 421 MSD----TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPH-TLLSRFDLIFLLLDP 495 (720)
Q Consensus 421 m~~----~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~-aLlsRFdli~~l~d~ 495 (720)
+.. ....+|+..++.. +..+|.++|... .++. +|.+|+. .+.+..+
T Consensus 110 L~~~~d~~~~~aL~~~l~~~---------------~~~iIli~n~~~-------------~~~~k~Lrsr~~-~I~f~~~ 160 (482)
T PRK04195 110 IHGNEDRGGARAILELIKKA---------------KQPIILTANDPY-------------DPSLRELRNACL-MIEFKRL 160 (482)
T ss_pred cccccchhHHHHHHHHHHcC---------------CCCEEEeccCcc-------------ccchhhHhccce-EEEecCC
Confidence 976 3466777777632 234566677443 2334 6777774 6777766
Q ss_pred ChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703 496 QSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT 539 (720)
Q Consensus 496 ~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~ 539 (720)
..++....+. ..-..-...+++++.+.|++.
T Consensus 161 ~~~~i~~~L~-------------~i~~~egi~i~~eaL~~Ia~~ 191 (482)
T PRK04195 161 STRSIVPVLK-------------RICRKEGIECDDEALKEIAER 191 (482)
T ss_pred CHHHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHH
Confidence 6554332222 111122446788888888743
No 196
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.44 E-value=1.7e-07 Score=105.50 Aligned_cols=86 Identities=23% Similarity=0.400 Sum_probs=59.1
Q ss_pred hheeecccCCceeeeeeccCcccCCccCCCCCCCCcceeeccC------CccchhhhhhhhcCC--------------C-
Q psy17703 286 EAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNR------SHFTDKQLVRLQETP--------------A- 344 (720)
Q Consensus 286 ~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~~~~~~~~------s~~~d~Q~iklQE~p--------------g- 344 (720)
+..|+|++||+....|..+ ||+|+.|++|+-.... +.....+.+..++.+ |
T Consensus 5 ~~~y~C~~Cg~~~~~~~g~--------Cp~C~~w~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~ri~TGi~~LD~~LgGG 76 (446)
T PRK11823 5 KTAYVCQECGAESPKWLGR--------CPECGAWNTLVEEVAASKAGSSKPVQPLSDIEAEEEPRISTGIGELDRVLGGG 76 (446)
T ss_pred CCeEECCcCCCCCcccCee--------CcCCCCccceeeecccccccCCCCceehhhcccccCCcccCCcHHHHHHhcCC
Confidence 5689999999999999876 9999999998763210 111122333333222 2
Q ss_pred ---CccEEEEcCCCCHHHHHHHHHHhhCC----CCccccCCc
Q psy17703 345 ---EINILLCGDPGTSKSQLLSYVYDLVP----RSQYTSGKG 379 (720)
Q Consensus 345 ---~i~vLL~G~PGtGKS~ll~~va~~~p----r~~~~~g~~ 379 (720)
..-+||.|+||+|||+|+..++.... +..|.++.+
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 33789999999999999988876542 345665554
No 197
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=3e-06 Score=93.45 Aligned_cols=154 Identities=17% Similarity=0.217 Sum_probs=86.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCcccc-CC--ccccccccceeecC-ccccceeeeccee-eecCCceeecccccc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTS-GK--GSSAVGLTAYITKD-PETRQMVLQTGAL-VLADSGVCCIDEFDK 420 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~-g~--~ss~~glta~~~~~-~~~~~~~~~~G~l-~lad~gI~~IDEidk 420 (720)
.++||+||||+|||++++.+++.+....... +. ......+.+..... ....+..-+.... ..++..+++|||++.
T Consensus 40 ~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~ 119 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHM 119 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhh
Confidence 4799999999999999999998764321111 00 00011111100000 0000000000010 124567999999999
Q ss_pred CChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHH
Q psy17703 421 MSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQF 500 (720)
Q Consensus 421 m~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~ 500 (720)
|+...++.|+..||+. +..+.+|.++|.. -.+.+++.+|+. ++.+..++.++.
T Consensus 120 l~~~~~~~ll~~le~~-------------~~~~~~Il~~~~~-------------~kl~~~l~sr~~-~v~~~~~~~~~l 172 (367)
T PRK14970 120 LSSAAFNAFLKTLEEP-------------PAHAIFILATTEK-------------HKIIPTILSRCQ-IFDFKRITIKDI 172 (367)
T ss_pred cCHHHHHHHHHHHhCC-------------CCceEEEEEeCCc-------------ccCCHHHHhcce-eEecCCccHHHH
Confidence 9998889999888752 2234455455421 147789999996 566766655543
Q ss_pred HHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703 501 DARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT 539 (720)
Q Consensus 501 d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~ 539 (720)
.. ++...-+.-.-.+++++.+.+...
T Consensus 173 ~~-------------~l~~~~~~~g~~i~~~al~~l~~~ 198 (367)
T PRK14970 173 KE-------------HLAGIAVKEGIKFEDDALHIIAQK 198 (367)
T ss_pred HH-------------HHHHHHHHcCCCCCHHHHHHHHHh
Confidence 22 222211122445788888888753
No 198
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.7e-06 Score=100.90 Aligned_cols=127 Identities=22% Similarity=0.215 Sum_probs=72.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCcc------ccCC-----------cccccccccee-ecCccccceeeecc-eee
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQY------TSGK-----------GSSAVGLTAYI-TKDPETRQMVLQTG-ALV 406 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~------~~g~-----------~ss~~glta~~-~~~~~~~~~~~~~G-~l~ 406 (720)
.++||+||||+|||++|+.+++.+..... .+|. ......+.+.. ..-...++...... .-+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~ 118 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPV 118 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChh
Confidence 58999999999999999999997753211 1110 00000000000 00000000000000 001
Q ss_pred ecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703 407 LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF 486 (720)
Q Consensus 407 lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF 486 (720)
.+...|++|||++.|+.+.+++|+..||+- +..+.+|.++|-.. .+.++|.||+
T Consensus 119 ~~~~KViIIDEad~Lt~~a~naLLK~LEeP-------------p~~tvfIL~t~~~~-------------~llpTIrSRc 172 (620)
T PRK14948 119 QARWKVYVIDECHMLSTAAFNALLKTLEEP-------------PPRVVFVLATTDPQ-------------RVLPTIISRC 172 (620)
T ss_pred cCCceEEEEECccccCHHHHHHHHHHHhcC-------------CcCeEEEEEeCChh-------------hhhHHHHhhe
Confidence 245579999999999999999999999852 23344444444111 3778999999
Q ss_pred eeEEEecCCChHH
Q psy17703 487 DLIFLLLDPQSEQ 499 (720)
Q Consensus 487 dli~~l~d~~~~~ 499 (720)
. .+.+..++.++
T Consensus 173 ~-~~~f~~l~~~e 184 (620)
T PRK14948 173 Q-RFDFRRIPLEA 184 (620)
T ss_pred e-EEEecCCCHHH
Confidence 5 56676665543
No 199
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.40 E-value=4.1e-06 Score=85.95 Aligned_cols=187 Identities=18% Similarity=0.269 Sum_probs=102.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCcccc--CCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTS--GKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~--g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
...-.+.||+|||||..++.+++.+.+.+++- ....+...+. . +-.|. ...|..+|+|||++++
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~-----------r-il~G~--~~~GaW~cfdefnrl~ 97 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLS-----------R-ILKGL--AQSGAWLCFDEFNRLS 97 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHH-----------H-HHHHH--HHHT-EEEEETCCCSS
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHH-----------H-HHHHH--hhcCchhhhhhhhhhh
Confidence 34556899999999999999999998765532 1111111110 0 00121 1236689999999999
Q ss_pred hHHHHHH-------HHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCC
Q psy17703 423 DTTRSIL-------HEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDP 495 (720)
Q Consensus 423 ~~~~~~L-------~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~ 495 (720)
.+....+ ..++..+.-.+.-.|....++..+.+..|+||.+.+ ...||+.|..-|- -+.+..|
T Consensus 98 ~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~g---------r~~LP~nLk~lFR-pvam~~P 167 (231)
T PF12774_consen 98 EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAG---------RSELPENLKALFR-PVAMMVP 167 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCC---------C--S-HHHCTTEE-EEE--S-
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCC---------cccCCHhHHHHhh-eeEEeCC
Confidence 9876655 344443333333478888999999999999997533 2358999988885 4444444
Q ss_pred ChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHH
Q psy17703 496 QSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHA 571 (720)
Q Consensus 496 ~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A 571 (720)
+-... + +..-.+. --.-.....+.+...|...+..-....+....-|.+.++++.|...-
T Consensus 168 D~~~I----~---------ei~L~s~---GF~~a~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~~~k 227 (231)
T PF12774_consen 168 DLSLI----A---------EILLLSQ---GFKDAKSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAGSLK 227 (231)
T ss_dssp -HHHH----H---------HHHHHCC---CTSSHHHHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHHHHH
T ss_pred CHHHH----H---------HHHHHHc---CchhHHHHHHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHHHHh
Confidence 33211 1 1111111 11223455566666666655554444555555699999999886653
No 200
>KOG0726|consensus
Probab=98.40 E-value=4.8e-07 Score=92.50 Aligned_cols=191 Identities=20% Similarity=0.266 Sum_probs=102.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCcc--ccceeeecceeeecCCceeeccccccCC-
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPE--TRQMVLQTGALVLADSGVCCIDEFDKMS- 422 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~--~~~~~~~~G~l~lad~gI~~IDEidkm~- 422 (720)
-.|+|+|+||||||.||+++|+..... |.-..++. +.-.+..+.. .++..--++. -...|+||||||...
T Consensus 220 KGVIlyG~PGTGKTLLAKAVANqTSAT-FlRvvGse---LiQkylGdGpklvRqlF~vA~e---~apSIvFiDEIdAiGt 292 (440)
T KOG0726|consen 220 KGVILYGEPGTGKTLLAKAVANQTSAT-FLRVVGSE---LIQKYLGDGPKLVRELFRVAEE---HAPSIVFIDEIDAIGT 292 (440)
T ss_pred CeeEEeCCCCCchhHHHHHHhcccchh-hhhhhhHH---HHHHHhccchHHHHHHHHHHHh---cCCceEEeehhhhhcc
Confidence 368999999999999999999754311 10000110 0000000000 0000000110 125799999999864
Q ss_pred ----------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeEE
Q psy17703 423 ----------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLIF 490 (720)
Q Consensus 423 ----------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli~ 490 (720)
.+.|..++|.+.|- .|... ..++-||.|+|... .|.|+|++ |.|-.+
T Consensus 293 KRyds~SggerEiQrtmLELLNQl------dGFds--rgDvKvimATnrie-------------~LDPaLiRPGrIDrKI 351 (440)
T KOG0726|consen 293 KRYDSNSGGEREIQRTMLELLNQL------DGFDS--RGDVKVIMATNRIE-------------TLDPALIRPGRIDRKI 351 (440)
T ss_pred ccccCCCccHHHHHHHHHHHHHhc------cCccc--cCCeEEEEeccccc-------------ccCHhhcCCCcccccc
Confidence 34566788888653 22221 45688999999776 58899988 999888
Q ss_pred EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHH-HHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEAS-QRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~-~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
.+..|+.....+++.-|-+. -.+.+++- +.++ . .+..++. -.+.++..-|--
T Consensus 352 ef~~pDe~TkkkIf~IHTs~---------------Mtl~~dVnle~li----~------~kddlSG--AdIkAictEaGl 404 (440)
T KOG0726|consen 352 EFPLPDEKTKKKIFQIHTSR---------------MTLAEDVNLEELI----M------TKDDLSG--ADIKAICTEAGL 404 (440)
T ss_pred ccCCCchhhhceeEEEeecc---------------cchhccccHHHHh----h------ccccccc--ccHHHHHHHHhH
Confidence 88777544333222222111 11111110 1111 0 0111111 334455555555
Q ss_pred HHHHcCCCCCCHHhHHHHHHHH
Q psy17703 570 HAKMRYSETVEVQDVDEAWRLH 591 (720)
Q Consensus 570 ~A~l~~~~~V~~~Dv~~Ai~l~ 591 (720)
+|.-+-|-.|+.+|...|.+-.
T Consensus 405 lAlRerRm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 405 LALRERRMKVTMEDFKKAKEKV 426 (440)
T ss_pred HHHHHHHhhccHHHHHHHHHHH
Confidence 5555556789999999997743
No 201
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=6.2e-06 Score=96.21 Aligned_cols=184 Identities=18% Similarity=0.255 Sum_probs=97.7
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCc---------------cccccccceeecC-cccccee--eecceeee
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKG---------------SSAVGLTAYITKD-PETRQMV--LQTGALVL 407 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~---------------ss~~glta~~~~~-~~~~~~~--~~~G~l~l 407 (720)
.+||+||||+|||++++.+++.+..... ..+.. .....+.+..... ...++.. ..... ..
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p-~~ 118 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRP-AL 118 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCc-cc
Confidence 4699999999999999999987642110 00000 0000000000000 0000000 00001 23
Q ss_pred cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703 408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD 487 (720)
Q Consensus 408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd 487 (720)
++..|++|||++.|+.+.++.|+..||+-. ..+.+|.+++... .+.+++.||+.
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp-------------~~tv~Il~t~~~~-------------kll~tI~SR~~ 172 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPP-------------PHAIFILATTEVH-------------KVPATILSRCQ 172 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCC-------------CCeEEEEEeCChh-------------hhhHHHHhccc
Confidence 567899999999999999999999998631 2334444443111 36788999996
Q ss_pred eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH
Q psy17703 488 LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567 (720)
Q Consensus 488 li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla 567 (720)
.+.+......+.... +......-.-.+++++.+.|.+.. ..++|.+...+.-.
T Consensus 173 -~i~f~~l~~~el~~~-------------L~~~a~~egl~i~~eal~~La~~s-------------~Gdlr~al~~LekL 225 (585)
T PRK14950 173 -RFDFHRHSVADMAAH-------------LRKIAAAEGINLEPGALEAIARAA-------------TGSMRDAENLLQQL 225 (585)
T ss_pred -eeeCCCCCHHHHHHH-------------HHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHH
Confidence 566766555433222 221111123457778777776432 12345555544321
Q ss_pred HHHHHHcCCCCCCHHhHHHHH
Q psy17703 568 EAHAKMRYSETVEVQDVDEAW 588 (720)
Q Consensus 568 ~A~A~l~~~~~V~~~Dv~~Ai 588 (720)
.. . ....++.+++..++
T Consensus 226 ~~---y-~~~~It~e~V~~ll 242 (585)
T PRK14950 226 AT---T-YGGEISLSQVQSLL 242 (585)
T ss_pred HH---h-cCCCCCHHHHHHHh
Confidence 11 1 23467777776643
No 202
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.39 E-value=1.5e-06 Score=99.58 Aligned_cols=188 Identities=20% Similarity=0.236 Sum_probs=108.7
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC------CccccCCccccccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR------SQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK 420 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr------~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk 420 (720)
+++|+|++|+|||.|++++++.+-. ..|.+..... ..+...+ ++.....+.. .+.+-.+++||||+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~-~el~~al-~~~~~~~f~~-----~y~~~DLLlIDDIq~ 388 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT-NEFINSI-RDGKGDSFRR-----RYREMDILLVDDIQF 388 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH-HHHHHHH-HhccHHHHHH-----HhhcCCEEEEehhcc
Confidence 4999999999999999999986521 1222211100 0000000 0000000000 012346899999998
Q ss_pred CChH--HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCC
Q psy17703 421 MSDT--TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQ 496 (720)
Q Consensus 421 m~~~--~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~ 496 (720)
+... .+..|+.+++... ..+-.+|-|+|-....+. .+.+.|.|||. +++.+..|.
T Consensus 389 l~gke~tqeeLF~l~N~l~------------e~gk~IIITSd~~P~eL~---------~l~~rL~SRf~~GLvv~I~~PD 447 (617)
T PRK14086 389 LEDKESTQEEFFHTFNTLH------------NANKQIVLSSDRPPKQLV---------TLEDRLRNRFEWGLITDVQPPE 447 (617)
T ss_pred ccCCHHHHHHHHHHHHHHH------------hcCCCEEEecCCChHhhh---------hccHHHHhhhhcCceEEcCCCC
Confidence 8553 3566767765432 112335556664433221 37789999996 677777777
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCC
Q psy17703 497 SEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYS 576 (720)
Q Consensus 497 ~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~ 576 (720)
++.+...|.+ .++. -...+++++.++|...+ .-+.|.|+.++.--.+.|.+..
T Consensus 448 ~EtR~aIL~k------------ka~~-r~l~l~~eVi~yLa~r~-------------~rnvR~LegaL~rL~a~a~~~~- 500 (617)
T PRK14086 448 LETRIAILRK------------KAVQ-EQLNAPPEVLEFIASRI-------------SRNIRELEGALIRVTAFASLNR- 500 (617)
T ss_pred HHHHHHHHHH------------HHHh-cCCCCCHHHHHHHHHhc-------------cCCHHHHHHHHHHHHHHHHhhC-
Confidence 6654433332 1222 35678999999887543 2245888886665556676655
Q ss_pred CCCCHHhHHHHHH
Q psy17703 577 ETVEVQDVDEAWR 589 (720)
Q Consensus 577 ~~V~~~Dv~~Ai~ 589 (720)
..++.+.++++++
T Consensus 501 ~~itl~la~~vL~ 513 (617)
T PRK14086 501 QPVDLGLTEIVLR 513 (617)
T ss_pred CCCCHHHHHHHHH
Confidence 4578777777665
No 203
>KOG0743|consensus
Probab=98.36 E-value=1.6e-06 Score=94.37 Aligned_cols=118 Identities=23% Similarity=0.285 Sum_probs=71.4
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT 424 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~ 424 (720)
.--=||+||||||||+|+.++|+.+.-.+|-- .-+.+..+. . ++-=.+..++..|++|.+||..-.-
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydL--eLt~v~~n~------d-----Lr~LL~~t~~kSIivIEDIDcs~~l 301 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDL--ELTEVKLDS------D-----LRHLLLATPNKSILLIEDIDCSFDL 301 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCCceEEe--eeccccCcH------H-----HHHHHHhCCCCcEEEEeeccccccc
Confidence 34789999999999999999999887655521 111111111 1 1111223346789999999875210
Q ss_pred ------------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--
Q psy17703 425 ------------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS-- 484 (720)
Q Consensus 425 ------------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls-- 484 (720)
..+.|+-++ +|.+..--..-.|+.|+|..+ +|+|||++
T Consensus 302 ~~~~~~~~~~~~~~~~~VTlSGLLNfi---------DGlwSscg~ERIivFTTNh~E-------------kLDPALlRpG 359 (457)
T KOG0743|consen 302 RERRKKKKENFEGDLSRVTLSGLLNFL---------DGLWSSCGDERIIVFTTNHKE-------------KLDPALLRPG 359 (457)
T ss_pred ccccccccccccCCcceeehHHhhhhh---------ccccccCCCceEEEEecCChh-------------hcCHhhcCCC
Confidence 011222222 333322212335777888665 79999999
Q ss_pred cceeEEEecCCCh
Q psy17703 485 RFDLIFLLLDPQS 497 (720)
Q Consensus 485 RFdli~~l~d~~~ 497 (720)
|.|+.+.+..=..
T Consensus 360 RmDmhI~mgyCtf 372 (457)
T KOG0743|consen 360 RMDMHIYMGYCTF 372 (457)
T ss_pred cceeEEEcCCCCH
Confidence 9999888875443
No 204
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.33 E-value=5.4e-06 Score=87.01 Aligned_cols=209 Identities=16% Similarity=0.095 Sum_probs=114.1
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCC-ccccC---Ccccccccc---ceeecCccccce------eeec---ceeee
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRS-QYTSG---KGSSAVGLT---AYITKDPETRQM------VLQT---GALVL 407 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g---~~ss~~glt---a~~~~~~~~~~~------~~~~---G~l~l 407 (720)
+...++|+|+||+|||++++.+++.++.. +.... ...+...+. +....-+..+.. .+.. .....
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 34468999999999999999999877532 11100 000000000 000000000000 0000 00001
Q ss_pred cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703 408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD 487 (720)
Q Consensus 408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd 487 (720)
....+++|||++.++......|....+-.. . -...+.++.+..|..... + .. .-..++.+|+.
T Consensus 122 ~~~~vliiDe~~~l~~~~~~~l~~l~~~~~-----~-----~~~~~~vvl~g~~~~~~~-----l-~~-~~~~~l~~r~~ 184 (269)
T TIGR03015 122 GKRALLVVDEAQNLTPELLEELRMLSNFQT-----D-----NAKLLQIFLVGQPEFRET-----L-QS-PQLQQLRQRII 184 (269)
T ss_pred CCCeEEEEECcccCCHHHHHHHHHHhCccc-----C-----CCCeEEEEEcCCHHHHHH-----H-cC-chhHHHHhhee
Confidence 123588999999999887776665443211 0 012245556555532110 0 00 11246788887
Q ss_pred eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH
Q psy17703 488 LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567 (720)
Q Consensus 488 li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla 567 (720)
..+.+.+.+.++....+. ..+..+...-.+.+++++.+.|.+.- ...||.+..+...+
T Consensus 185 ~~~~l~~l~~~e~~~~l~---------~~l~~~g~~~~~~~~~~~~~~i~~~s-------------~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 185 ASCHLGPLDREETREYIE---------HRLERAGNRDAPVFSEGAFDAIHRFS-------------RGIPRLINILCDRL 242 (269)
T ss_pred eeeeCCCCCHHHHHHHHH---------HHHHHcCCCCCCCcCHHHHHHHHHHc-------------CCcccHHHHHHHHH
Confidence 777777666554322221 11222211113468888888887431 12358899999999
Q ss_pred HHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703 568 EAHAKMRYSETVEVQDVDEAWRLH 591 (720)
Q Consensus 568 ~A~A~l~~~~~V~~~Dv~~Ai~l~ 591 (720)
...|..+..+.|+.+++++|+.-+
T Consensus 243 ~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 243 LLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHh
Confidence 999988999999999999998743
No 205
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=1.4e-06 Score=96.40 Aligned_cols=130 Identities=17% Similarity=0.213 Sum_probs=78.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCcc---c-----------cCCccccccccc--eeecCccccce----eeeccee
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQY---T-----------SGKGSSAVGLTA--YITKDPETRQM----VLQTGAL 405 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~---~-----------~g~~ss~~glta--~~~~~~~~~~~----~~~~G~l 405 (720)
..+||+||||+|||++++.+++.+-...- . .|...+..-+.. ...+-...++. ...|
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p--- 113 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRP--- 113 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCc---
Confidence 35899999999999999999986532110 0 000000000000 00000000000 0111
Q ss_pred eecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcc
Q psy17703 406 VLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSR 485 (720)
Q Consensus 406 ~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsR 485 (720)
..+...|++|||+|+|++..+++|+..||+-. +....|++|+||. .++++++||
T Consensus 114 ~~~~~kViiIDead~m~~~aanaLLk~LEep~------------~~~~fIL~a~~~~--------------~llpTIrSR 167 (394)
T PRK07940 114 STGRWRIVVIEDADRLTERAANALLKAVEEPP------------PRTVWLLCAPSPE--------------DVLPTIRSR 167 (394)
T ss_pred ccCCcEEEEEechhhcCHHHHHHHHHHhhcCC------------CCCeEEEEECChH--------------HChHHHHhh
Confidence 12345699999999999999999999998631 1224567777753 488999999
Q ss_pred ceeEEEecCCChHHHHHHHH
Q psy17703 486 FDLIFLLLDPQSEQFDARLA 505 (720)
Q Consensus 486 Fdli~~l~d~~~~~~d~~la 505 (720)
+- .+.+..|+.++....+.
T Consensus 168 c~-~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 168 CR-HVALRTPSVEAVAEVLV 186 (394)
T ss_pred Ce-EEECCCCCHHHHHHHHH
Confidence 94 77788777666554444
No 206
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1e-05 Score=94.12 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=61.0
Q ss_pred ecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEE-EecccCCCCCCCCCcccccccCCChhhhcc
Q psy17703 407 LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSI-LAAANPCDSQWNTSKTIIDNIRLPHTLLSR 485 (720)
Q Consensus 407 lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~i-iaaaNp~~g~~~~~~~~~~~~~l~~aLlsR 485 (720)
.++..|++|||+++|+...+++|+..||+- |..+.+ +++.++ ..+.+++.+|
T Consensus 125 ~~~~KVvIIdEad~Lt~~a~naLLK~LEeP-------------p~~tv~IL~t~~~--------------~kLl~TI~SR 177 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAAFNAFLKTLEEP-------------PPHAIFIFATTEL--------------HKIPATIASR 177 (620)
T ss_pred cCCCEEEEEeChhhcCHHHHHHHHHHHhCC-------------CCCeEEEEEeCCh--------------hhhhHHHHhh
Confidence 356779999999999999999999999862 122333 344332 1588899999
Q ss_pred ceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703 486 FDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT 539 (720)
Q Consensus 486 Fdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~ 539 (720)
+. ++.+..++.++. .+++...-..-.-.+++++.+.|+..
T Consensus 178 c~-~vef~~l~~~ei-------------~~~L~~i~~~egi~I~~eal~~La~~ 217 (620)
T PRK14954 178 CQ-RFNFKRIPLDEI-------------QSQLQMICRAEGIQIDADALQLIARK 217 (620)
T ss_pred ce-EEecCCCCHHHH-------------HHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 95 777777765543 33333322222455788888777643
No 207
>PRK05642 DNA replication initiation factor; Validated
Probab=98.31 E-value=8.8e-06 Score=83.95 Aligned_cols=183 Identities=19% Similarity=0.225 Sum_probs=99.3
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh--
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD-- 423 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~-- 423 (720)
-+++|+|++|+|||.|++++++.+... + .....+++.-..... ..+ .+ . +.+..+++||+++....
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~----~--~~v~y~~~~~~~~~~-~~~-~~--~--~~~~d~LiiDDi~~~~~~~ 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR----G--EPAVYLPLAELLDRG-PEL-LD--N--LEQYELVCLDDLDVIAGKA 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC----C--CcEEEeeHHHHHhhh-HHH-HH--h--hhhCCEEEEechhhhcCCh
Confidence 578999999999999999998644210 0 111111111000000 000 00 0 11235889999987753
Q ss_pred HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCChHHHH
Q psy17703 424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQSEQFD 501 (720)
Q Consensus 424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~~~~~d 501 (720)
..+..|..+++... ..+..+|-|+|-.+..|. .+.+.|.|||- +++.+..+++++..
T Consensus 114 ~~~~~Lf~l~n~~~------------~~g~~ilits~~~p~~l~---------~~~~~L~SRl~~gl~~~l~~~~~e~~~ 172 (234)
T PRK05642 114 DWEEALFHLFNRLR------------DSGRRLLLAASKSPRELP---------IKLPDLKSRLTLALVFQMRGLSDEDKL 172 (234)
T ss_pred HHHHHHHHHHHHHH------------hcCCEEEEeCCCCHHHcC---------ccCccHHHHHhcCeeeecCCCCHHHHH
Confidence 44566777765321 111234444443222221 24588999995 77888887776554
Q ss_pred HHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCH
Q psy17703 502 ARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEV 581 (720)
Q Consensus 502 ~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~ 581 (720)
..+. . .+... .-.+++++.+.|.... +-+.|.++.++..-.. +.+.....||.
T Consensus 173 ~il~---------~---ka~~~-~~~l~~ev~~~L~~~~-------------~~d~r~l~~~l~~l~~-~~l~~~~~it~ 225 (234)
T PRK05642 173 RALQ---------L---RASRR-GLHLTDEVGHFILTRG-------------TRSMSALFDLLERLDQ-ASLQAQRKLTI 225 (234)
T ss_pred HHHH---------H---HHHHc-CCCCCHHHHHHHHHhc-------------CCCHHHHHHHHHHHHH-HHHHcCCcCCH
Confidence 3332 1 22221 3568899998887542 2345888776654433 33443345776
Q ss_pred HhHHHHH
Q psy17703 582 QDVDEAW 588 (720)
Q Consensus 582 ~Dv~~Ai 588 (720)
.-+++++
T Consensus 226 ~~~~~~L 232 (234)
T PRK05642 226 PFLKETL 232 (234)
T ss_pred HHHHHHh
Confidence 6666654
No 208
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.31 E-value=3.4e-06 Score=86.12 Aligned_cols=179 Identities=22% Similarity=0.299 Sum_probs=95.6
Q ss_pred hhcCCCC--ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccce--------eecCccccceeeecceeeec
Q psy17703 339 LQETPAE--INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAY--------ITKDPETRQMVLQTGALVLA 408 (720)
Q Consensus 339 lQE~pg~--i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~--------~~~~~~~~~~~~~~G~l~la 408 (720)
+.+.|+. -+++|+|++|+|||.|++++++.+-+. ..+.....+++. ..++....++ . -.+.
T Consensus 26 ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~----~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~--~---~~~~ 96 (219)
T PF00308_consen 26 IAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ----HPGKRVVYLSAEEFIREFADALRDGEIEEF--K---DRLR 96 (219)
T ss_dssp HHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH----CTTS-EEEEEHHHHHHHHHHHHHTTSHHHH--H---HHHC
T ss_pred HHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc----cccccceeecHHHHHHHHHHHHHcccchhh--h---hhhh
Confidence 3333443 479999999999999999998754210 001111111110 0000000000 0 0123
Q ss_pred CCceeeccccccCChHH--HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703 409 DSGVCCIDEFDKMSDTT--RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF 486 (720)
Q Consensus 409 d~gI~~IDEidkm~~~~--~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF 486 (720)
.-.+++||+++.+.... +..|...++...- ..-.+|.|++-.+..+ ..+.+.|.|||
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~------------~~k~li~ts~~~P~~l---------~~~~~~L~SRl 155 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIE------------SGKQLILTSDRPPSEL---------SGLLPDLRSRL 155 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHH------------TTSEEEEEESS-TTTT---------TTS-HHHHHHH
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHh------------hCCeEEEEeCCCCccc---------cccChhhhhhH
Confidence 45799999999998765 6777777764321 1123444444333221 13778999999
Q ss_pred e--eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHH
Q psy17703 487 D--LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLI 564 (720)
Q Consensus 487 d--li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~li 564 (720)
. +++.+..|+++...+.+.+ .|+. -...+++++.+.|...+ +-+.|.|+.++
T Consensus 156 ~~Gl~~~l~~pd~~~r~~il~~------------~a~~-~~~~l~~~v~~~l~~~~-------------~~~~r~L~~~l 209 (219)
T PF00308_consen 156 SWGLVVELQPPDDEDRRRILQK------------KAKE-RGIELPEEVIEYLARRF-------------RRDVRELEGAL 209 (219)
T ss_dssp HCSEEEEE----HHHHHHHHHH------------HHHH-TT--S-HHHHHHHHHHT-------------TSSHHHHHHHH
T ss_pred hhcchhhcCCCCHHHHHHHHHH------------HHHH-hCCCCcHHHHHHHHHhh-------------cCCHHHHHHHH
Confidence 8 6778877766544333221 2222 34568999999887653 22458888888
Q ss_pred HHHHHHHHH
Q psy17703 565 RLSEAHAKM 573 (720)
Q Consensus 565 rla~A~A~l 573 (720)
.--.+.+.+
T Consensus 210 ~~l~~~~~~ 218 (219)
T PF00308_consen 210 NRLDAYAQL 218 (219)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 766666554
No 209
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=7.4e-06 Score=88.56 Aligned_cols=132 Identities=20% Similarity=0.223 Sum_probs=77.2
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCc----cccCCcc------ccccccceeec-Cc--------cccceeeecc-eee
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQ----YTSGKGS------SAVGLTAYITK-DP--------ETRQMVLQTG-ALV 406 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~----~~~g~~s------s~~glta~~~~-~~--------~~~~~~~~~G-~l~ 406 (720)
-+||.||+|+||+++++.+++.+-... ..+|.=. ...+.....+. +. ..++..-... .-.
T Consensus 24 a~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~~ 103 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTAQ 103 (328)
T ss_pred eeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhccc
Confidence 488999999999999999999663211 0011000 00000000000 00 0000000000 001
Q ss_pred ecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceE-EEecccCCCCCCCCCcccccccCCChhhhcc
Q psy17703 407 LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTS-ILAAANPCDSQWNTSKTIIDNIRLPHTLLSR 485 (720)
Q Consensus 407 lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~-iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsR 485 (720)
.+...|++|||+++|+.+..++|+..||+- |.++. |+.|.||. .++++++||
T Consensus 104 ~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-------------p~~~~fiL~t~~~~--------------~ll~TI~SR 156 (328)
T PRK05707 104 LGGRKVVLIEPAEAMNRNAANALLKSLEEP-------------SGDTVLLLISHQPS--------------RLLPTIKSR 156 (328)
T ss_pred cCCCeEEEECChhhCCHHHHHHHHHHHhCC-------------CCCeEEEEEECChh--------------hCcHHHHhh
Confidence 234568999999999999999999999973 22233 44444443 489999999
Q ss_pred ceeEEEecCCChHHHHHHHHh
Q psy17703 486 FDLIFLLLDPQSEQFDARLAR 506 (720)
Q Consensus 486 Fdli~~l~d~~~~~~d~~la~ 506 (720)
+- .+.+.+++.++....+.+
T Consensus 157 c~-~~~~~~~~~~~~~~~L~~ 176 (328)
T PRK05707 157 CQ-QQACPLPSNEESLQWLQQ 176 (328)
T ss_pred ce-eeeCCCcCHHHHHHHHHH
Confidence 96 577777777766555554
No 210
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.28 E-value=4.1e-06 Score=94.38 Aligned_cols=187 Identities=19% Similarity=0.241 Sum_probs=110.2
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCccc---------------cCCccccccccceeecC-ccccceeeecc-eeeecC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYT---------------SGKGSSAVGLTAYITKD-PETRQMVLQTG-ALVLAD 409 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~---------------~g~~ss~~glta~~~~~-~~~~~~~~~~G-~l~lad 409 (720)
--||.||-|||||+++|.+|+.+....-. .|...+.+.+.++.... ...++..-+.. +-+.+.
T Consensus 40 AYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~r 119 (515)
T COG2812 40 AYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGR 119 (515)
T ss_pred hhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCcccc
Confidence 56899999999999999999977433211 11112222222221110 00111100000 111233
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
..|.+|||.+-++....++|+..+|+---++ ..|+||++|. ++|+.++||+- .
T Consensus 120 yKVyiIDEvHMLS~~afNALLKTLEEPP~hV------------~FIlATTe~~--------------Kip~TIlSRcq-~ 172 (515)
T COG2812 120 YKVYIIDEVHMLSKQAFNALLKTLEEPPSHV------------KFILATTEPQ--------------KIPNTILSRCQ-R 172 (515)
T ss_pred ceEEEEecHHhhhHHHHHHHhcccccCccCe------------EEEEecCCcC--------------cCchhhhhccc-c
Confidence 5699999999999999999999988754333 4467777765 59999999995 6
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
|.+.-.+.++ +.+++.+.-..-.-...+++...+.... ..+.|...+++.-+-+
T Consensus 173 f~fkri~~~~-------------I~~~L~~i~~~E~I~~e~~aL~~ia~~a-------------~Gs~RDalslLDq~i~ 226 (515)
T COG2812 173 FDFKRLDLEE-------------IAKHLAAILDKEGINIEEDALSLIARAA-------------EGSLRDALSLLDQAIA 226 (515)
T ss_pred ccccCCCHHH-------------HHHHHHHHHHhcCCccCHHHHHHHHHHc-------------CCChhhHHHHHHHHHH
Confidence 7776655443 3444444433334456677776665331 1234777777654443
Q ss_pred HHHHcCCCCCCHHhHHHHHHH
Q psy17703 570 HAKMRYSETVEVQDVDEAWRL 590 (720)
Q Consensus 570 ~A~l~~~~~V~~~Dv~~Ai~l 590 (720)
.. .+.|+.+++...+.+
T Consensus 227 ~~----~~~It~~~v~~~lG~ 243 (515)
T COG2812 227 FG----EGEITLESVRDMLGL 243 (515)
T ss_pred cc----CCcccHHHHHHHhCC
Confidence 32 257787777766443
No 211
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.27 E-value=7e-07 Score=100.58 Aligned_cols=87 Identities=26% Similarity=0.420 Sum_probs=56.9
Q ss_pred hheeecccCCceeeeeeccCcccCCccCCCCCCCCcceeeccC-------Ccc----c--h--h-----hhhhhhcCC--
Q psy17703 286 EAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNR-------SHF----T--D--K-----QLVRLQETP-- 343 (720)
Q Consensus 286 ~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~~~~~~~~-------s~~----~--d--~-----Q~iklQE~p-- 343 (720)
+..|+|.+||++...|..+ ||+|+.|++|...... +.. . . . ..++..+.+
T Consensus 5 ~~~y~C~~Cg~~~~~~~g~--------Cp~C~~w~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri 76 (454)
T TIGR00416 5 KSKFVCQHCGADSPKWQGK--------CPACHAWNTITEERLHRSLGAQKNRRNSGKAGIPQAQKSQTISAIELEEVPRF 76 (454)
T ss_pred CCeEECCcCCCCCccccEE--------CcCCCCccccchhhcccccccccccccccccccccCccceEhhhccccccCcc
Confidence 4579999999999999876 9999999998763111 010 0 0 1 111111111
Q ss_pred ------------C----CccEEEEcCCCCHHHHHHHHHHhhC-C---CCccccCCcc
Q psy17703 344 ------------A----EINILLCGDPGTSKSQLLSYVYDLV-P---RSQYTSGKGS 380 (720)
Q Consensus 344 ------------g----~i~vLL~G~PGtGKS~ll~~va~~~-p---r~~~~~g~~s 380 (720)
| +--+|+.|+||+|||+|+..++..+ . +..|.++..+
T Consensus 77 ~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs 133 (454)
T TIGR00416 77 SSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES 133 (454)
T ss_pred ccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC
Confidence 2 2368999999999999998886644 2 2356665543
No 212
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.25 E-value=7.8e-06 Score=89.43 Aligned_cols=214 Identities=16% Similarity=0.148 Sum_probs=109.1
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD 423 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~ 423 (720)
.+.|+++.||||||||.++.++.... ...+|.-.+.+.|...... -..|. ++.-.+++|||+..++.
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~---a~~sG~f~T~a~Lf~~L~~--------~~lg~--v~~~DlLI~DEvgylp~ 274 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYV---ILISGGTITVAKLFYNIST--------RQIGL--VGRWDVVAFDEVATLKF 274 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHH---HHHcCCcCcHHHHHHHHHH--------HHHhh--hccCCEEEEEcCCCCcC
Confidence 56799999999999999999876431 1223322222222211111 11232 23346899999988553
Q ss_pred H----HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCC--CCCCCC----cccccccCCChhhhccceeEEEec
Q psy17703 424 T----TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD--SQWNTS----KTIIDNIRLPHTLLSRFDLIFLLL 493 (720)
Q Consensus 424 ~----~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~--g~~~~~----~~~~~~~~l~~aLlsRFdli~~l~ 493 (720)
+ ..+.|...||.+.++. .... ..+.++++.-.|-.. ...... ..+.+.++ ..|+++||...+.=.
T Consensus 275 ~~~~~~v~imK~yMesg~fsR--G~~~--~~a~as~vfvGNi~~~v~~~~~~~~Lf~~lP~~~~-DsAflDRiH~yiPGW 349 (449)
T TIGR02688 275 AKPKELIGILKNYMESGSFTR--GDET--KSSDASFVFLGNVPLTSEHMVKNSDLFSPLPEFMR-DSAFLDRIHGYLPGW 349 (449)
T ss_pred CchHHHHHHHHHHHHhCceec--ccee--eeeeeEEEEEcccCCcchhhcCcccccccCChhhh-hhHHHHhhhccCCCC
Confidence 3 3567888899998876 3333 334555555555321 111111 11222223 568888885222111
Q ss_pred CCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHH
Q psy17703 494 DPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKM 573 (720)
Q Consensus 494 d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l 573 (720)
..|. -..+.+..+. -+.-.|++.+-..++. .......+.|..+ +-.++.|.-.++.++.-+.-|+
T Consensus 350 eipk-~~~e~~t~~y--Gl~~DylsE~l~~lR~----~~~~~~~~~~~~l--------~~~~~~RD~~aV~kt~SgllKL 414 (449)
T TIGR02688 350 EIPK-IRKEMFSNGY--GFVVDYFAEALRELRE----REYADIVDRHFSL--------SPNLNTRDVIAVKKTFSGLMKI 414 (449)
T ss_pred cCcc-CCHHHcccCC--cchHHHHHHHHHHHHh----hHHHHhhhhheec--------CCCcchhhHHHHHHHHHHHHHH
Confidence 1110 0111222221 1233333333222211 0111111111111 1224569999999988888887
Q ss_pred -cCCCCCCHHhHHHHHHH
Q psy17703 574 -RYSETVEVQDVDEAWRL 590 (720)
Q Consensus 574 -~~~~~V~~~Dv~~Ai~l 590 (720)
--...++.+|++++++.
T Consensus 415 L~P~~~~~~ee~~~~l~~ 432 (449)
T TIGR02688 415 LFPHGTITKEEFTECLEP 432 (449)
T ss_pred hCCCCCCCHHHHHHHHHH
Confidence 34567889999887664
No 213
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.25 E-value=7.2e-07 Score=84.22 Aligned_cols=110 Identities=19% Similarity=0.292 Sum_probs=71.3
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD 423 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~ 423 (720)
.+.+|||.|+|||||+.+|++++....+..-..- ......+. ...+..+.+|+++|+|++.+++
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~-~~~~~~~~---------------~~~l~~a~~gtL~l~~i~~L~~ 83 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFI-VIDCASLP---------------AELLEQAKGGTLYLKNIDRLSP 83 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CC-CCCHHCTC---------------HHHHHHCTTSEEEEECGCCS-H
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeE-EechhhCc---------------HHHHHHcCCCEEEECChHHCCH
Confidence 5789999999999999999999987654210000 00000000 1111224799999999999999
Q ss_pred HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703 424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD 487 (720)
Q Consensus 424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd 487 (720)
+.|..|.++++... +.++.+|+++.... ....+.-.+.+.|+.||.
T Consensus 84 ~~Q~~L~~~l~~~~------------~~~~RlI~ss~~~l------~~l~~~~~~~~~L~~~l~ 129 (138)
T PF14532_consen 84 EAQRRLLDLLKRQE------------RSNVRLIASSSQDL------EELVEEGRFSPDLYYRLS 129 (138)
T ss_dssp HHHHHHHHHHHHCT------------TTTSEEEEEECC-C------CCHHHHSTHHHHHHHHCS
T ss_pred HHHHHHHHHHHhcC------------CCCeEEEEEeCCCH------HHHhhccchhHHHHHHhC
Confidence 99999999997621 24567777776433 222344467788888887
No 214
>KOG0744|consensus
Probab=98.24 E-value=2.7e-06 Score=88.45 Aligned_cols=131 Identities=23% Similarity=0.319 Sum_probs=80.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccc--cccccceeecCccccceeeecceeee----------cCCc-
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSS--AVGLTAYITKDPETRQMVLQTGALVL----------ADSG- 411 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss--~~glta~~~~~~~~~~~~~~~G~l~l----------ad~g- 411 (720)
+--|||+||||||||+|.+++|..+. +.+.++..- .+.+. .......|.-|.|.++. .+.|
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLS--IR~~~~y~~~~liEin----shsLFSKWFsESgKlV~kmF~kI~ELv~d~~~ 250 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLS--IRTNDRYYKGQLIEIN----SHSLFSKWFSESGKLVAKMFQKIQELVEDRGN 250 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhe--eeecCccccceEEEEe----hhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCc
Confidence 45699999999999999999998662 111111110 01111 01122345556565431 2334
Q ss_pred --eeeccccccCChH---------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCccccc
Q psy17703 412 --VCCIDEFDKMSDT---------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIID 474 (720)
Q Consensus 412 --I~~IDEidkm~~~---------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~ 474 (720)
.++|||...+... ..++++.-|++-+ --.++.++||+|-..
T Consensus 251 lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK-----------~~~NvliL~TSNl~~----------- 308 (423)
T KOG0744|consen 251 LVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK-----------RYPNVLILATSNLTD----------- 308 (423)
T ss_pred EEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-----------cCCCEEEEeccchHH-----------
Confidence 3579999765321 1334554444321 124689999999544
Q ss_pred ccCCChhhhccceeEEEecCCChHHHHHHHH
Q psy17703 475 NIRLPHTLLSRFDLIFLLLDPQSEQFDARLA 505 (720)
Q Consensus 475 ~~~l~~aLlsRFdli~~l~d~~~~~~d~~la 505 (720)
.++.|+.+|-|+.+.+.+|..+...+++.
T Consensus 309 --siD~AfVDRADi~~yVG~Pt~~ai~~Ilk 337 (423)
T KOG0744|consen 309 --SIDVAFVDRADIVFYVGPPTAEAIYEILK 337 (423)
T ss_pred --HHHHHhhhHhhheeecCCccHHHHHHHHH
Confidence 47899999999999999998876655543
No 215
>KOG0729|consensus
Probab=98.24 E-value=1.3e-06 Score=88.24 Aligned_cols=123 Identities=23% Similarity=0.244 Sum_probs=72.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCC-ccccCCc--cccccccceeecCccccceeeecceeeec-CCceeeccccccC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRS-QYTSGKG--SSAVGLTAYITKDPETRQMVLQTGALVLA-DSGVCCIDEFDKM 421 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g~~--ss~~glta~~~~~~~~~~~~~~~G~l~la-d~gI~~IDEidkm 421 (720)
-.|||+||||||||..+|++++..... +..-|.+ ...+|..+-+++.-+. +... ...|+|+||+|.+
T Consensus 212 kgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~---------martkkaciiffdeidai 282 (435)
T KOG0729|consen 212 KGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFE---------MARTKKACIIFFDEIDAI 282 (435)
T ss_pred CceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHH---------HhcccceEEEEeeccccc
Confidence 368999999999999999999865321 1111111 1112222222221110 0011 2368999999876
Q ss_pred C-----------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--ccee
Q psy17703 422 S-----------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDL 488 (720)
Q Consensus 422 ~-----------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdl 488 (720)
. .+.|-.++|.+.|-.-.- -..+.-++.|+|... .|.|+|++ |.|-
T Consensus 283 ggarfddg~ggdnevqrtmleli~qldgfd--------prgnikvlmatnrpd-------------tldpallrpgrldr 341 (435)
T KOG0729|consen 283 GGARFDDGAGGDNEVQRTMLELINQLDGFD--------PRGNIKVLMATNRPD-------------TLDPALLRPGRLDR 341 (435)
T ss_pred cCccccCCCCCcHHHHHHHHHHHHhccCCC--------CCCCeEEEeecCCCC-------------CcCHhhcCCccccc
Confidence 3 345777888876532111 124567888898654 48888887 8886
Q ss_pred EEEecCCChH
Q psy17703 489 IFLLLDPQSE 498 (720)
Q Consensus 489 i~~l~d~~~~ 498 (720)
.+.+.-|.-+
T Consensus 342 kvef~lpdle 351 (435)
T KOG0729|consen 342 KVEFGLPDLE 351 (435)
T ss_pred ceeccCCccc
Confidence 6666555433
No 216
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.2e-05 Score=91.67 Aligned_cols=151 Identities=19% Similarity=0.240 Sum_probs=84.7
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCCCCccc-cC----C-----------ccccccccceeecC-ccccceeeecc-eeeecC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVPRSQYT-SG----K-----------GSSAVGLTAYITKD-PETRQMVLQTG-ALVLAD 409 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g----~-----------~ss~~glta~~~~~-~~~~~~~~~~G-~l~lad 409 (720)
+||+||+|+|||++++.+++.+...... .+ . ......+.+.-... ........+.- .-..++
T Consensus 42 yLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~ 121 (614)
T PRK14971 42 YLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGK 121 (614)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCC
Confidence 7899999999999999999976421110 00 0 00000000000000 00000000000 012345
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
..|++|||++.|+.+.+++|+..||+- |..+.+|.+++.. ..+.++|+||+. +
T Consensus 122 ~KVvIIdea~~Ls~~a~naLLK~LEep-------------p~~tifIL~tt~~-------------~kIl~tI~SRc~-i 174 (614)
T PRK14971 122 YKIYIIDEVHMLSQAAFNAFLKTLEEP-------------PSYAIFILATTEK-------------HKILPTILSRCQ-I 174 (614)
T ss_pred cEEEEEECcccCCHHHHHHHHHHHhCC-------------CCCeEEEEEeCCc-------------hhchHHHHhhhh-e
Confidence 679999999999999999999999862 2234444444411 158899999996 6
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQ 538 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~ 538 (720)
+.+..++.++.. +++.+.-+...-.+++++.+.|+.
T Consensus 175 v~f~~ls~~ei~-------------~~L~~ia~~egi~i~~~al~~La~ 210 (614)
T PRK14971 175 FDFNRIQVADIV-------------NHLQYVASKEGITAEPEALNVIAQ 210 (614)
T ss_pred eecCCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777777665443 333332222244566777666653
No 217
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.22 E-value=9.7e-07 Score=81.38 Aligned_cols=131 Identities=22% Similarity=0.295 Sum_probs=68.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCccccccccc----eeecC--ccccceeeecceeeecC---Cc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTA----YITKD--PETRQMVLQTGALVLAD---SG 411 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta----~~~~~--~~~~~~~~~~G~l~lad---~g 411 (720)
..+++|+||||||||++++.++..+... .+.+........... ....+ ...+....+ ..+..+. ..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 80 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLR-LALALARKLKPD 80 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHH-HHHHHHHhcCCC
Confidence 3589999999999999999999987653 222211111000000 00000 000000011 1112222 38
Q ss_pred eeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEE
Q psy17703 412 VCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFL 491 (720)
Q Consensus 412 I~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~ 491 (720)
++++||++.+.............. ..............+++++|+ .....+..+..|++..+.
T Consensus 81 viiiDei~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~ 143 (148)
T smart00382 81 VLILDEITSLLDAEQEALLLLLEE-----LRLLLLLKSEKNLTVILTTND------------EKDLGPALLRRRFDRRIV 143 (148)
T ss_pred EEEEECCcccCCHHHHHHHHhhhh-----hHHHHHHHhcCCCEEEEEeCC------------CccCchhhhhhccceEEE
Confidence 999999999988776554332110 000001112345789999996 111345666668886665
Q ss_pred ec
Q psy17703 492 LL 493 (720)
Q Consensus 492 l~ 493 (720)
+.
T Consensus 144 ~~ 145 (148)
T smart00382 144 LL 145 (148)
T ss_pred ec
Confidence 54
No 218
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.22 E-value=2.7e-06 Score=95.71 Aligned_cols=195 Identities=16% Similarity=0.183 Sum_probs=103.5
Q ss_pred cCCCC-ccEEEEcCCCCHHHHHHHHHHhhCC------CCccccCCccccccccceeecCccccceeeecceeeecCCcee
Q psy17703 341 ETPAE-INILLCGDPGTSKSQLLSYVYDLVP------RSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVC 413 (720)
Q Consensus 341 E~pg~-i~vLL~G~PGtGKS~ll~~va~~~p------r~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~ 413 (720)
+.|+. -+++|+|+||+|||.|++++++.+. +..|.+..... ..+..+. +......+.. . ......++
T Consensus 125 ~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~-~~~~~~~-~~~~~~~f~~---~-~~~~~dvL 198 (440)
T PRK14088 125 KNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL-NDLVDSM-KEGKLNEFRE---K-YRKKVDVL 198 (440)
T ss_pred hCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-HHHHHHH-hcccHHHHHH---H-HHhcCCEE
Confidence 33443 3799999999999999999998642 11222211100 0000000 0000000000 0 00135689
Q ss_pred eccccccCCh--HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eE
Q psy17703 414 CIDEFDKMSD--TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LI 489 (720)
Q Consensus 414 ~IDEidkm~~--~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li 489 (720)
+|||++.+.. ..+..|...+....- .| ..+|.++|-.+..+ -.+.+.+.|||. ++
T Consensus 199 lIDDi~~l~~~~~~q~elf~~~n~l~~----~~--------k~iIitsd~~p~~l---------~~l~~rL~SR~~~gl~ 257 (440)
T PRK14088 199 LIDDVQFLIGKTGVQTELFHTFNELHD----SG--------KQIVICSDREPQKL---------SEFQDRLVSRFQMGLV 257 (440)
T ss_pred EEechhhhcCcHHHHHHHHHHHHHHHH----cC--------CeEEEECCCCHHHH---------HHHHHHHhhHHhcCce
Confidence 9999997743 234455555532110 11 12333443221111 135688999996 56
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
+.+..|..+.+...+. +. +.. -.-.+++++.+.|.+.+ ..+.|.|+.++.--.+
T Consensus 258 v~i~~pd~e~r~~IL~---------~~---~~~-~~~~l~~ev~~~Ia~~~-------------~~~~R~L~g~l~~l~~ 311 (440)
T PRK14088 258 AKLEPPDEETRKKIAR---------KM---LEI-EHGELPEEVLNFVAENV-------------DDNLRRLRGAIIKLLV 311 (440)
T ss_pred EeeCCCCHHHHHHHHH---------HH---HHh-cCCCCCHHHHHHHHhcc-------------ccCHHHHHHHHHHHHH
Confidence 6676666554433332 11 111 24568899988887543 2345889887765566
Q ss_pred HHHHcCCCCCCHHhHHHHHH
Q psy17703 570 HAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 570 ~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
.|.+..+ .+|.+.+.+++.
T Consensus 312 ~~~~~~~-~it~~~a~~~L~ 330 (440)
T PRK14088 312 YKETTGE-EVDLKEAILLLK 330 (440)
T ss_pred HHHHhCC-CCCHHHHHHHHH
Confidence 7777654 577777777665
No 219
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=9.3e-06 Score=88.93 Aligned_cols=204 Identities=17% Similarity=0.168 Sum_probs=122.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCC------CccccCCcccc----ccccce-eecCccccceeee-----cceee-ec
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPR------SQYTSGKGSSA----VGLTAY-ITKDPETRQMVLQ-----TGALV-LA 408 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr------~~~~~g~~ss~----~glta~-~~~~~~~~~~~~~-----~G~l~-la 408 (720)
.|++++|+||||||..++++++.+-. .+|..+..-.. ....+. +..-+.+|....+ ...+. ..
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~ 122 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKG 122 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcC
Confidence 36999999999999999999986622 13322221100 000000 0011111110000 00000 11
Q ss_pred CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703 409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL 488 (720)
Q Consensus 409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl 488 (720)
..-|+.+||+|.|.......|+....... . ...++.+++.+|... ....|.+.+.|||-.
T Consensus 123 ~~~IvvLDEid~L~~~~~~~LY~L~r~~~--------~--~~~~v~vi~i~n~~~----------~~~~ld~rv~s~l~~ 182 (366)
T COG1474 123 KTVIVILDEVDALVDKDGEVLYSLLRAPG--------E--NKVKVSIIAVSNDDK----------FLDYLDPRVKSSLGP 182 (366)
T ss_pred CeEEEEEcchhhhccccchHHHHHHhhcc--------c--cceeEEEEEEeccHH----------HHHHhhhhhhhccCc
Confidence 22378999999998887666776653221 1 156789999999543 122577888888873
Q ss_pred E-EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH
Q psy17703 489 I-FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567 (720)
Q Consensus 489 i-~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla 567 (720)
. +.+++...++....|. .+...+. ....+++++.+.+......- ....|....++|.|
T Consensus 183 ~~I~F~pY~a~el~~Il~---------~R~~~~~--~~~~~~~~vl~lia~~~a~~----------~GDAR~aidilr~A 241 (366)
T COG1474 183 SEIVFPPYTAEELYDILR---------ERVEEGF--SAGVIDDDVLKLIAALVAAE----------SGDARKAIDILRRA 241 (366)
T ss_pred ceeeeCCCCHHHHHHHHH---------HHHHhhc--cCCCcCccHHHHHHHHHHHc----------CccHHHHHHHHHHH
Confidence 3 4555555555544433 3333322 25577888887776554311 11469999999999
Q ss_pred HHHHHHcCCCCCCHHhHHHHHHH
Q psy17703 568 EAHAKMRYSETVEVQDVDEAWRL 590 (720)
Q Consensus 568 ~A~A~l~~~~~V~~~Dv~~Ai~l 590 (720)
--.|.-+++..++.+|+..|..-
T Consensus 242 ~eiAe~~~~~~v~~~~v~~a~~~ 264 (366)
T COG1474 242 GEIAEREGSRKVSEDHVREAQEE 264 (366)
T ss_pred HHHHHhhCCCCcCHHHHHHHHHH
Confidence 99999999999999999999543
No 220
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.17 E-value=1.4e-06 Score=95.47 Aligned_cols=83 Identities=25% Similarity=0.422 Sum_probs=54.5
Q ss_pred eecccCCceeeeeeccCcccCCccCCCCCCCCcceeeccCC----c------cchh-----hhhhhhcCC----------
Q psy17703 289 FRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRS----H------FTDK-----QLVRLQETP---------- 343 (720)
Q Consensus 289 f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~~~~~~~~s----~------~~d~-----Q~iklQE~p---------- 343 (720)
|+|.+||++...|.++ ||+|+.|++|....... . .... ..+...+.+
T Consensus 1 ~~c~~cg~~~~~~~g~--------cp~c~~w~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~TGi~eLD 72 (372)
T cd01121 1 YVCSECGYVSPKWLGK--------CPECGEWNTLVEEIEPSSSSGSGGRSSGGSASKVIPLSDIEAEEEERIPTGIEELD 72 (372)
T ss_pred CCCCCCCCCCCCccEE--------CcCCCCceeeeehhccccccccccccccccCCCceEhhhccccccCccccCCHHHH
Confidence 7999999999999876 99999999987632111 0 0001 112211111
Q ss_pred ----C----CccEEEEcCCCCHHHHHHHHHHhhCC----CCccccCCc
Q psy17703 344 ----A----EINILLCGDPGTSKSQLLSYVYDLVP----RSQYTSGKG 379 (720)
Q Consensus 344 ----g----~i~vLL~G~PGtGKS~ll~~va~~~p----r~~~~~g~~ 379 (720)
| .--+|+.|+||+|||+|+..++.... +..|.++..
T Consensus 73 ~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 73 RVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred HhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 2 23689999999999999988876442 334555543
No 221
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.15 E-value=4.6e-06 Score=82.98 Aligned_cols=126 Identities=17% Similarity=0.199 Sum_probs=72.2
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcc------------ccccccceeecCc------cccceeeeccee-ee
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGS------------SAVGLTAYITKDP------ETRQMVLQTGAL-VL 407 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~s------------s~~glta~~~~~~------~~~~~~~~~G~l-~l 407 (720)
.+||+||||+|||++++.+++.+.......+... ....+. .+..+. ...+..-..... ..
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~-~~~~~~~~~~~~~i~~i~~~~~~~~~~ 94 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLH-RLEPEGQSIKVDQVRELVEFLSRTPQE 94 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEE-EeccccCcCCHHHHHHHHHHHccCccc
Confidence 4899999999999999999886632100001000 000000 000000 000000000000 12
Q ss_pred cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703 408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD 487 (720)
Q Consensus 408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd 487 (720)
++..+++|||+++|+.+.++.|+..||+. +..+.+|.++|.. ..+.+++.+|+.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~-------------~~~~~~il~~~~~-------------~~l~~~i~sr~~ 148 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEP-------------PPNTLFILITPSP-------------EKLLPTIRSRCQ 148 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECCh-------------HhChHHHHhhcE
Confidence 34569999999999999999999999753 2234455445421 147899999995
Q ss_pred eEEEecCCChHHH
Q psy17703 488 LIFLLLDPQSEQF 500 (720)
Q Consensus 488 li~~l~d~~~~~~ 500 (720)
++.+.++..++.
T Consensus 149 -~~~~~~~~~~~~ 160 (188)
T TIGR00678 149 -VLPFPPLSEEAL 160 (188)
T ss_pred -EeeCCCCCHHHH
Confidence 677777766553
No 222
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.13 E-value=1.2e-05 Score=82.06 Aligned_cols=141 Identities=22% Similarity=0.233 Sum_probs=78.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeeccee-eecCCceeecccccc-CC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGAL-VLADSGVCCIDEFDK-MS 422 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l-~lad~gI~~IDEidk-m~ 422 (720)
-.|+||+|+.|||||++++++...... .| +-...+..........--..+ .....-|+|+|++.- ..
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~----~G-------LRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~ 120 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYAD----QG-------LRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLSFEEG 120 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhh----cC-------ceEEEECHHHhccHHHHHHHHhcCCCCEEEEecCCCCCCC
Confidence 469999999999999999999875421 01 111100000000000000000 012356899999742 23
Q ss_pred hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCC---CCCCCCCcc-------cccccCCChhhhccceeEEEe
Q psy17703 423 DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC---DSQWNTSKT-------IIDNIRLPHTLLSRFDLIFLL 492 (720)
Q Consensus 423 ~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~---~g~~~~~~~-------~~~~~~l~~aLlsRFdli~~l 492 (720)
+..-..|..+|| |.....|.++.+.||+|.. ...|....+ ..+.++=.-+|-+||-|.+.+
T Consensus 121 d~~yk~LKs~Le---------Ggle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F 191 (249)
T PF05673_consen 121 DTEYKALKSVLE---------GGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSF 191 (249)
T ss_pred cHHHHHHHHHhc---------CccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEe
Confidence 333446666664 4445668999999999953 222222211 111111123788899999999
Q ss_pred cCCChHHHHHHHH
Q psy17703 493 LDPQSEQFDARLA 505 (720)
Q Consensus 493 ~d~~~~~~d~~la 505 (720)
.+++.+++-.++.
T Consensus 192 ~~~~q~~YL~IV~ 204 (249)
T PF05673_consen 192 YPPDQEEYLAIVR 204 (249)
T ss_pred cCCCHHHHHHHHH
Confidence 9888776654433
No 223
>PHA01747 putative ATP-dependent protease
Probab=98.07 E-value=1.7e-05 Score=84.50 Aligned_cols=166 Identities=22% Similarity=0.268 Sum_probs=99.7
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC-
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS- 422 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~- 422 (720)
.+.|++=.||.|||||.+.+-+.+..|..+ +|...+.+-|.. +..++ ..|.+.+ -.++++||+..+.
T Consensus 189 ~NyNliELgPRGTGKS~~f~eis~fsp~~i--SGG~~TvA~LFy----N~~t~----~~GLVg~--~D~VaFDEVa~i~f 256 (425)
T PHA01747 189 RPVHIIELSNRGTGKTTTFVILQELFNFRY--YTEPPTYANLVY----DAKTN----ALGLVFL--SNGLIFDEIQTWKD 256 (425)
T ss_pred CCeeEEEecCCCCChhhHHHHhhhcCCcee--eCCCCchHHheE----ecCCC----ceeEEee--ccEEEEEccccccC
Confidence 468999999999999999999888788765 333333333322 22222 3455443 3568899998876
Q ss_pred ---hHHHHHHHHHHHhceEeeeccCeEE--eecCceEEEecccCCCCC---CCCC---cc-ccc--cc-CCChhhhccce
Q psy17703 423 ---DTTRSILHEVMEQQTLSIAKAGIIC--QLNARTSILAAANPCDSQ---WNTS---KT-IID--NI-RLPHTLLSRFD 487 (720)
Q Consensus 423 ---~~~~~~L~e~mE~~~vsi~k~g~~~--~l~a~~~iiaaaNp~~g~---~~~~---~~-~~~--~~-~l~~aLlsRFd 487 (720)
++....|...||.+.++..+..... +..+.++++.+.|+..-. |... +. +.+ -+ .+.+|||+||.
T Consensus 257 ~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~asiVf~GNin~~~l~~~~~~~~l~~~Lp~~~~~r~~~sA~LDRIh 336 (425)
T PHA01747 257 SNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNPDSSTLDTYQTPNYIKNYLVSYELFQSLTKAILDRIA 336 (425)
T ss_pred CCHHHHHHHHHHHhhcceeecCCCCcccchhhccceeEEEecCCCCccccccccchhHHHhcchhhhhcccchHHhhhhh
Confidence 3456678888999999876543333 677889999999976322 2110 01 111 01 13789999998
Q ss_pred eEEEecCCChHHHHHHHH-hhcchhHHHHHHHHHHhh
Q psy17703 488 LIFLLLDPQSEQFDARLA-RHLDITVLRDYIAYAQEH 523 (720)
Q Consensus 488 li~~l~d~~~~~~d~~la-~~i~~~~l~~~i~~ar~~ 523 (720)
++-.-.+... .+..+. .-+-...||.+|.+.+++
T Consensus 337 i~g~~~pkIs--~d~~~sG~vL~~tilr~~i~~~q~~ 371 (425)
T PHA01747 337 IIIVNEKKIT--YDDIISGRVLYPTILRGLISLVQSK 371 (425)
T ss_pred hcccccCcCC--HHHhcccceeHHHHHHHHHHHHHHH
Confidence 3322111111 121221 122455677777766653
No 224
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=0.0002 Score=77.75 Aligned_cols=70 Identities=23% Similarity=0.314 Sum_probs=51.5
Q ss_pred cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecc-cCCCCCCCCCcccccccCCChhhhccc
Q psy17703 408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAA-NPCDSQWNTSKTIIDNIRLPHTLLSRF 486 (720)
Q Consensus 408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaa-Np~~g~~~~~~~~~~~~~l~~aLlsRF 486 (720)
++..|++|||+++|+.+.+++|+..||+- |..+.+|.++ |+. ++.+++.||+
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEP-------------p~~~~~Il~t~~~~--------------~ll~TIrSRc 161 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEP-------------SGGTTAILLTENKH--------------QILPTILSRC 161 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCC-------------CCCceEEEEeCChH--------------hCcHHHHhhc
Confidence 45679999999999999999999999863 2233344344 332 4889999999
Q ss_pred eeEEEecCCChHHHHHHHH
Q psy17703 487 DLIFLLLDPQSEQFDARLA 505 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la 505 (720)
- ++.+.+++.++....+.
T Consensus 162 ~-~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 162 Q-VVEFRPLPPESLIQRLQ 179 (329)
T ss_pred e-eeeCCCCCHHHHHHHHH
Confidence 5 77787777776655554
No 225
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.05 E-value=3.3e-05 Score=84.77 Aligned_cols=207 Identities=18% Similarity=0.228 Sum_probs=118.1
Q ss_pred cchhhhhhhhcCCCC--ccEEEEcCCCCHHHHHHHHHHhhC----C--CCccccCCccccccccceeecCccccceeeec
Q psy17703 331 FTDKQLVRLQETPAE--INILLCGDPGTSKSQLLSYVYDLV----P--RSQYTSGKGSSAVGLTAYITKDPETRQMVLQT 402 (720)
Q Consensus 331 ~~d~Q~iklQE~pg~--i~vLL~G~PGtGKS~ll~~va~~~----p--r~~~~~g~~ss~~glta~~~~~~~~~~~~~~~ 402 (720)
+...-...+++.||. -+++|+|++|.|||.|++++...+ | +.+|.+......--..+ .++....++.
T Consensus 97 ~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a--~~~~~~~~Fk--- 171 (408)
T COG0593 97 LAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKA--LRDNEMEKFK--- 171 (408)
T ss_pred HHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHH--HHhhhHHHHH---
Confidence 333444566777764 599999999999999999998855 2 11222111000000000 0110000000
Q ss_pred ceeeecCCceeeccccccCChH--HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCCh
Q psy17703 403 GALVLADSGVCCIDEFDKMSDT--TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPH 480 (720)
Q Consensus 403 G~l~lad~gI~~IDEidkm~~~--~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~ 480 (720)
. .. +-.+++||+++.+... .+..+......-. .. .+ +|+-|+...+..+. .+.+
T Consensus 172 -~-~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~----~~-------~k-qIvltsdr~P~~l~---------~~~~ 227 (408)
T COG0593 172 -E-KY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALL----EN-------GK-QIVLTSDRPPKELN---------GLED 227 (408)
T ss_pred -H-hh-ccCeeeechHhHhcCChhHHHHHHHHHHHHH----hc-------CC-EEEEEcCCCchhhc---------cccH
Confidence 0 01 3468999999887654 2444444432110 01 11 44555543332222 3668
Q ss_pred hhhccce--eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHH
Q psy17703 481 TLLSRFD--LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPR 558 (720)
Q Consensus 481 aLlsRFd--li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R 558 (720)
.|.|||. +++.+.+|.++..-..|. + .+ +.-...+++++.+.++... .-+.|
T Consensus 228 rL~SR~~~Gl~~~I~~Pd~e~r~aiL~---------k---ka-~~~~~~i~~ev~~~la~~~-------------~~nvR 281 (408)
T COG0593 228 RLRSRLEWGLVVEIEPPDDETRLAILR---------K---KA-EDRGIEIPDEVLEFLAKRL-------------DRNVR 281 (408)
T ss_pred HHHHHHhceeEEeeCCCCHHHHHHHHH---------H---HH-HhcCCCCCHHHHHHHHHHh-------------hccHH
Confidence 9999999 677777777665433333 2 12 2236678999998887543 22348
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHH
Q psy17703 559 QLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHRE 593 (720)
Q Consensus 559 ~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~ 593 (720)
.|+..+.-.-+.|....+ .+|.+-+.++++.+..
T Consensus 282 eLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 282 ELEGALNRLDAFALFTKR-AITIDLVKEILKDLLR 315 (408)
T ss_pred HHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhc
Confidence 898888766677777766 7888888888775443
No 226
>KOG0735|consensus
Probab=98.03 E-value=8.1e-06 Score=92.50 Aligned_cols=123 Identities=26% Similarity=0.303 Sum_probs=70.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcccc----ccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSA----VGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK 420 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~----~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk 420 (720)
.-.|||+||||||||.|+.+++...+-. +.+-+|... +|-.--.+++-. .++. .|...|+|+||||.
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~-fisvKGPElL~KyIGaSEq~vR~lF-----~rA~---~a~PCiLFFDEfdS 771 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLR-FISVKGPELLSKYIGASEQNVRDLF-----ERAQ---SAKPCILFFDEFDS 771 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCee-EEEecCHHHHHHHhcccHHHHHHHH-----HHhh---ccCCeEEEeccccc
Confidence 4589999999999999999999866532 222222111 111101111111 1111 24568999999999
Q ss_pred CChH-----------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cce
Q psy17703 421 MSDT-----------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFD 487 (720)
Q Consensus 421 m~~~-----------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFd 487 (720)
+.+. .-+.|+.-|+ |... + ..+.|+||+..++ -++||||+ |+|
T Consensus 772 iAPkRGhDsTGVTDRVVNQlLTelD---------G~Eg-l-~GV~i~aaTsRpd-------------liDpALLRpGRlD 827 (952)
T KOG0735|consen 772 IAPKRGHDSTGVTDRVVNQLLTELD---------GAEG-L-DGVYILAATSRPD-------------LIDPALLRPGRLD 827 (952)
T ss_pred cCcccCCCCCCchHHHHHHHHHhhc---------cccc-c-ceEEEEEecCCcc-------------ccCHhhcCCCccc
Confidence 8763 2344555553 2211 2 2356777765443 37899998 999
Q ss_pred eEEEecCCChHHH
Q psy17703 488 LIFLLLDPQSEQF 500 (720)
Q Consensus 488 li~~l~d~~~~~~ 500 (720)
-.+....|...++
T Consensus 828 ~~v~C~~P~~~eR 840 (952)
T KOG0735|consen 828 KLVYCPLPDEPER 840 (952)
T ss_pred eeeeCCCCCcHHH
Confidence 5555554544443
No 227
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.01 E-value=1.3e-05 Score=86.37 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=74.6
Q ss_pred Ccc-EEEEcCCCCHHHHHHHHHHhhCCCCccc---------------cCCccccccccceeecCcc-cccee---eecce
Q psy17703 345 EIN-ILLCGDPGTSKSQLLSYVYDLVPRSQYT---------------SGKGSSAVGLTAYITKDPE-TRQMV---LQTGA 404 (720)
Q Consensus 345 ~i~-vLL~G~PGtGKS~ll~~va~~~pr~~~~---------------~g~~ss~~glta~~~~~~~-~~~~~---~~~G~ 404 (720)
-.| +||+||||+|||+++.++++.+...... .|.......+++...+... ..+.. .+...
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~ 102 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLS 102 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhc
Confidence 357 9999999999999999999966421110 0111222222222211110 00000 00000
Q ss_pred ee--ecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhh
Q psy17703 405 LV--LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTL 482 (720)
Q Consensus 405 l~--lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aL 482 (720)
.. ....-+++|||+|.|+.+.+++|+..||+. +.++.++-++|-.. .+.+++
T Consensus 103 ~~~~~~~~kviiidead~mt~~A~nallk~lEep-------------~~~~~~il~~n~~~-------------~il~tI 156 (325)
T COG0470 103 ESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP-------------PKNTRFILITNDPS-------------KILPTI 156 (325)
T ss_pred cCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC-------------CCCeEEEEEcCChh-------------hccchh
Confidence 00 123468999999999999999999999864 34566777777221 477799
Q ss_pred hccceeEEEecCC
Q psy17703 483 LSRFDLIFLLLDP 495 (720)
Q Consensus 483 lsRFdli~~l~d~ 495 (720)
.||+- ++.+.++
T Consensus 157 ~SRc~-~i~f~~~ 168 (325)
T COG0470 157 RSRCQ-RIRFKPP 168 (325)
T ss_pred hhcce-eeecCCc
Confidence 99995 5666553
No 228
>KOG0651|consensus
Probab=97.99 E-value=4.4e-06 Score=86.55 Aligned_cols=119 Identities=24% Similarity=0.232 Sum_probs=72.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCC---ccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRS---QYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~---~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
.-++|+||||||||.++++|+..+.-. +..+...+..+|..+-..++.+....... ..|+|+||+|...
T Consensus 167 kg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~--------pciifmdeiDAig 238 (388)
T KOG0651|consen 167 KGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVI--------PCIIFMDEIDAIG 238 (388)
T ss_pred ceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhC--------ceEEeehhhhhhc
Confidence 357999999999999999999977432 22223344445555544444322111111 3789999998742
Q ss_pred -----------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeE
Q psy17703 423 -----------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLI 489 (720)
Q Consensus 423 -----------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli 489 (720)
...|..|.+.+.|- -...-..++-+|.|+|... -|.|||++ |.|-.
T Consensus 239 GRr~se~Ts~dreiqrTLMeLlnqm--------dgfd~l~rVk~ImatNrpd-------------tLdpaLlRpGRldrk 297 (388)
T KOG0651|consen 239 GRRFSEGTSSDREIQRTLMELLNQM--------DGFDTLHRVKTIMATNRPD-------------TLDPALLRPGRLDRK 297 (388)
T ss_pred cEEeccccchhHHHHHHHHHHHHhh--------ccchhcccccEEEecCCcc-------------ccchhhcCCccccce
Confidence 23444555555421 1122345778899999554 47788887 77755
Q ss_pred EEec
Q psy17703 490 FLLL 493 (720)
Q Consensus 490 ~~l~ 493 (720)
+..+
T Consensus 298 ~~iP 301 (388)
T KOG0651|consen 298 VEIP 301 (388)
T ss_pred eccC
Confidence 5555
No 229
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=5.9e-05 Score=81.77 Aligned_cols=69 Identities=26% Similarity=0.262 Sum_probs=52.3
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCce-EEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNART-SILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL 488 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~-~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl 488 (720)
..|++||+.|+|+....++|+..||+- |.++ .|+.|.||. .|+|+++||+ .
T Consensus 133 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~--------------~LLpTI~SRc-q 184 (342)
T PRK06964 133 ARVVVLYPAEALNVAAANALLKTLEEP-------------PPGTVFLLVSARID--------------RLLPTILSRC-R 184 (342)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhcCC-------------CcCcEEEEEECChh--------------hCcHHHHhcC-E
Confidence 459999999999999999999999853 2333 345555544 4899999999 4
Q ss_pred EEEecCCChHHHHHHHHh
Q psy17703 489 IFLLLDPQSEQFDARLAR 506 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~ 506 (720)
.+.+.+++.++....+..
T Consensus 185 ~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 185 QFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EEEecCCCHHHHHHHHHH
Confidence 777888877776655554
No 230
>KOG0740|consensus
Probab=97.96 E-value=1.8e-06 Score=94.50 Aligned_cols=125 Identities=24% Similarity=0.294 Sum_probs=70.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeec---CCceeeccccccCCh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLA---DSGVCCIDEFDKMSD 423 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~la---d~gI~~IDEidkm~~ 423 (720)
-+||.||||+|||+|+++||..+.-..+ + .++..++..+.... +..+++ .+-.| ..+|+||||+|++-.
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE~~atff-~---iSassLtsK~~Ge~---eK~vra-lf~vAr~~qPsvifidEidslls 259 (428)
T KOG0740|consen 188 GLLLFGPPGTGKTMLAKAIATESGATFF-N---ISASSLTSKYVGES---EKLVRA-LFKVARSLQPSVIFIDEIDSLLS 259 (428)
T ss_pred hhheecCCCCchHHHHHHHHhhhcceEe-e---ccHHHhhhhccChH---HHHHHH-HHHHHHhcCCeEEEechhHHHHh
Confidence 6899999999999999999986642221 1 12222222221111 000000 00011 257899999987522
Q ss_pred H--------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCC
Q psy17703 424 T--------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDP 495 (720)
Q Consensus 424 ~--------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~ 495 (720)
. .+-...+.+-+ ..|....-+.++.+++|+|-.+ .++.++++||--++.++.|
T Consensus 260 ~Rs~~e~e~srr~ktefLiq------~~~~~s~~~drvlvigaTN~P~-------------e~Dea~~Rrf~kr~yiplP 320 (428)
T KOG0740|consen 260 KRSDNEHESSRRLKTEFLLQ------FDGKNSAPDDRVLVIGATNRPW-------------ELDEAARRRFVKRLYIPLP 320 (428)
T ss_pred hcCCcccccchhhhhHHHhh------hccccCCCCCeEEEEecCCCch-------------HHHHHHHHHhhceeeecCC
Confidence 1 12222233221 2333334455899999999776 5788999999855555555
Q ss_pred ChH
Q psy17703 496 QSE 498 (720)
Q Consensus 496 ~~~ 498 (720)
..+
T Consensus 321 d~e 323 (428)
T KOG0740|consen 321 DYE 323 (428)
T ss_pred CHH
Confidence 444
No 231
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=3.2e-05 Score=81.10 Aligned_cols=125 Identities=20% Similarity=0.295 Sum_probs=87.3
Q ss_pred CCceeeccccccCChH------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCccccccc
Q psy17703 409 DSGVCCIDEFDKMSDT------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNI 476 (720)
Q Consensus 409 d~gI~~IDEidkm~~~------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~ 476 (720)
+.||+|||||||.... .|--|+...|--+|+. |-|...+ ....+|||.- ..+..-.
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~T-KyG~VkT--dHILFIasGA---------Fh~sKPS 317 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVST-KYGPVKT--DHILFIASGA---------FHVAKPS 317 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeec-ccccccc--ceEEEEecCc---------eecCChh
Confidence 5699999999997432 2445777777666653 4443322 2456666543 1122233
Q ss_pred CCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhc
Q psy17703 477 RLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKL 546 (720)
Q Consensus 477 ~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~ 546 (720)
+|-|.|.-||.+.+.+...+.++..+.|.+ -...+++.|.+..+. .+.-.++++|.+.|++..+.+...
T Consensus 318 DLiPELQGRfPIRVEL~~Lt~~Df~rILte-p~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~ 387 (444)
T COG1220 318 DLIPELQGRFPIRVELDALTKEDFERILTE-PKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEK 387 (444)
T ss_pred hcChhhcCCCceEEEcccCCHHHHHHHHcC-cchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhccc
Confidence 688999999999999999988887766653 245688889887763 567789999999999887776553
No 232
>KOG0730|consensus
Probab=97.87 E-value=6.2e-05 Score=85.35 Aligned_cols=131 Identities=25% Similarity=0.231 Sum_probs=78.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCC--ccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGK--GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~--~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
...+|++||||||||.+++++++......+. .+. -+...|.+....+.. .-+++. .+...++||||+|.+
T Consensus 218 prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~-----f~~a~k--~~~psii~IdEld~l 290 (693)
T KOG0730|consen 218 PRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKA-----FAEALK--FQVPSIIFIDELDAL 290 (693)
T ss_pred CCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHH-----HHHHhc--cCCCeeEeHHhHhhh
Confidence 4589999999999999999999865422211 111 011122221111111 111111 112679999999998
Q ss_pred Ch----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc-cceeEE
Q psy17703 422 SD----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS-RFDLIF 490 (720)
Q Consensus 422 ~~----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls-RFdli~ 490 (720)
-+ ..-..|+.+|+.-. -.++..+++|+|... .|.+++.+ |||--+
T Consensus 291 ~p~r~~~~~~e~Rv~sqlltL~dg~~-----------~~~~vivl~atnrp~-------------sld~alRRgRfd~ev 346 (693)
T KOG0730|consen 291 CPKREGADDVESRVVSQLLTLLDGLK-----------PDAKVIVLAATNRPD-------------SLDPALRRGRFDREV 346 (693)
T ss_pred CCcccccchHHHHHHHHHHHHHhhCc-----------CcCcEEEEEecCCcc-------------ccChhhhcCCCccee
Confidence 75 22345666765321 124577889998654 47888887 999777
Q ss_pred EecCCChHHHHHHHHh
Q psy17703 491 LLLDPQSEQFDARLAR 506 (720)
Q Consensus 491 ~l~d~~~~~~d~~la~ 506 (720)
.+.-|....+...+..
T Consensus 347 ~IgiP~~~~RldIl~~ 362 (693)
T KOG0730|consen 347 EIGIPGSDGRLDILRV 362 (693)
T ss_pred eecCCCchhHHHHHHH
Confidence 7777765555444443
No 233
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.00015 Score=78.14 Aligned_cols=69 Identities=20% Similarity=0.289 Sum_probs=52.0
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCc-eEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNAR-TSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL 488 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~-~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl 488 (720)
..|++||++++|+....++|+..||+-. .+ ..++.|.||. .++|+++||+-
T Consensus 108 ~KV~iI~~a~~m~~~AaNaLLKtLEEPp-------------~~~~fiL~t~~~~--------------~llpTI~SRC~- 159 (325)
T PRK06871 108 NKVVYIQGAERLTEAAANALLKTLEEPR-------------PNTYFLLQADLSA--------------ALLPTIYSRCQ- 159 (325)
T ss_pred ceEEEEechhhhCHHHHHHHHHHhcCCC-------------CCeEEEEEECChH--------------hCchHHHhhce-
Confidence 4699999999999999999999999642 22 3345555544 48999999995
Q ss_pred EEEecCCChHHHHHHHHh
Q psy17703 489 IFLLLDPQSEQFDARLAR 506 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~ 506 (720)
.+.+.+++.++....|..
T Consensus 160 ~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQA 177 (325)
T ss_pred EEeCCCCCHHHHHHHHHH
Confidence 677887777766555554
No 234
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.87 E-value=2.9e-05 Score=75.45 Aligned_cols=57 Identities=25% Similarity=0.385 Sum_probs=39.8
Q ss_pred CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEE-ecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703 409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSIL-AAANPCDSQWNTSKTIIDNIRLPHTLLSRFD 487 (720)
Q Consensus 409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~ii-aaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd 487 (720)
...|++|||+|+|+.+.+++|+..||+- |.++.++ .|.|+. ++.++++||+-
T Consensus 102 ~~KviiI~~ad~l~~~a~NaLLK~LEep-------------p~~~~fiL~t~~~~--------------~il~TI~SRc~ 154 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEEAQNALLKTLEEP-------------PENTYFILITNNPS--------------KILPTIRSRCQ 154 (162)
T ss_dssp SSEEEEEETGGGS-HHHHHHHHHHHHST-------------TTTEEEEEEES-GG--------------GS-HHHHTTSE
T ss_pred CceEEEeehHhhhhHHHHHHHHHHhcCC-------------CCCEEEEEEECChH--------------HChHHHHhhce
Confidence 4569999999999999999999999974 2334444 444433 58999999995
Q ss_pred eEEEec
Q psy17703 488 LIFLLL 493 (720)
Q Consensus 488 li~~l~ 493 (720)
.+.+.
T Consensus 155 -~i~~~ 159 (162)
T PF13177_consen 155 -VIRFR 159 (162)
T ss_dssp -EEEE-
T ss_pred -EEecC
Confidence 44443
No 235
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00012 Score=79.49 Aligned_cols=131 Identities=19% Similarity=0.250 Sum_probs=78.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCcc------ccccccceee-cCcc--------ccc----eeee
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGS------SAVGLTAYIT-KDPE--------TRQ----MVLQ 401 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~s------s~~glta~~~-~~~~--------~~~----~~~~ 401 (720)
.+-.||.||+|+||++++.++++.+-.. ...+|.=. .+.+-....+ .+.. .++ ....
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~ 103 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEH 103 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhc
Confidence 3467899999999999999999966321 00111100 0000000000 0000 000 0111
Q ss_pred cceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCc-eEEEecccCCCCCCCCCcccccccCCCh
Q psy17703 402 TGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNAR-TSILAAANPCDSQWNTSKTIIDNIRLPH 480 (720)
Q Consensus 402 ~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~-~~iiaaaNp~~g~~~~~~~~~~~~~l~~ 480 (720)
| ..+...|++||+.++|+....++|+..||+-. .+ +.|+.|.||. +|+|
T Consensus 104 ~---~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------------~~t~fiL~t~~~~--------------~lLp 153 (334)
T PRK07993 104 A---RLGGAKVVWLPDAALLTDAAANALLKTLEEPP-------------ENTWFFLACREPA--------------RLLA 153 (334)
T ss_pred c---ccCCceEEEEcchHhhCHHHHHHHHHHhcCCC-------------CCeEEEEEECChh--------------hChH
Confidence 1 12345699999999999999999999999632 22 3455555544 4999
Q ss_pred hhhccceeEEEecCCChHHHHHHHHh
Q psy17703 481 TLLSRFDLIFLLLDPQSEQFDARLAR 506 (720)
Q Consensus 481 aLlsRFdli~~l~d~~~~~~d~~la~ 506 (720)
+++||+- .+.+..++.++...-+.+
T Consensus 154 TIrSRCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 154 TLRSRCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred HHHhccc-cccCCCCCHHHHHHHHHH
Confidence 9999997 567777766665555544
No 236
>KOG1808|consensus
Probab=97.79 E-value=2.4e-05 Score=98.25 Aligned_cols=151 Identities=16% Similarity=0.233 Sum_probs=106.5
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCcccc--CCccccccccceeecCccccceeeecceeeec--CCceeeccccc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTS--GKGSSAVGLTAYITKDPETRQMVLQTGALVLA--DSGVCCIDEFD 419 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~--g~~ss~~glta~~~~~~~~~~~~~~~G~l~la--d~gI~~IDEid 419 (720)
+..++||-||.|+|||.++.++++.....+..- ......-.+....+ ...+|....+-|.++-| +|..+++||++
T Consensus 439 ~~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~-~~~~g~l~freg~LV~Alr~G~~~vlD~ln 517 (1856)
T KOG1808|consen 439 GKFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYV-ADDNGDLVFREGVLVQALRNGDWIVLDELN 517 (1856)
T ss_pred CCCCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhh-cCCCCCeeeehhHHHHHHHhCCEEEecccc
Confidence 668999999999999999999999775432211 11111111111111 12346677788888766 57789999999
Q ss_pred cCChHHHHHHHHHHHh-ceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChH
Q psy17703 420 KMSDTTRSILHEVMEQ-QTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSE 498 (720)
Q Consensus 420 km~~~~~~~L~e~mE~-~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~ 498 (720)
..+.++.++|.++++. +.+.+...........++.++|+-||...- .+ .-.+..+|.+||. .+.+.+.+.+
T Consensus 518 la~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y-~g------rk~lsRa~~~rf~-e~~f~~~~e~ 589 (1856)
T KOG1808|consen 518 LAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTY-GG------RKILSRALRNRFI-ELHFDDIGEE 589 (1856)
T ss_pred ccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCcccc-ch------hhhhhhcccccch-hhhhhhcCch
Confidence 9999999999999987 888887777777778899999999987432 22 2257889999997 4444444544
Q ss_pred HHHHH
Q psy17703 499 QFDAR 503 (720)
Q Consensus 499 ~~d~~ 503 (720)
+....
T Consensus 590 e~~~i 594 (1856)
T KOG1808|consen 590 ELEEI 594 (1856)
T ss_pred hhhhh
Confidence 44433
No 237
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.79 E-value=0.00026 Score=76.05 Aligned_cols=102 Identities=25% Similarity=0.262 Sum_probs=57.6
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
.||+||||.+-++-+-.+.|..+||...- -.++.|+|.--..-.+. ....-..+|..||+|+ ++
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~s--------------PiiIlATNRg~~~irGt-~~~sphGiP~DlLDRl-lI 342 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESELS--------------PIIILATNRGITKIRGT-DIISPHGIPLDLLDRL-LI 342 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT----------------EEEEEES-SEEE-BTT-S-EEETT--HHHHTTE-EE
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCCC--------------cEEEEecCceeeeccCc-cCcCCCCCCcchHhhc-EE
Confidence 38999999999999999999999986432 23566677432211111 2233457999999999 56
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTY 540 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y 540 (720)
+...+...++..+.|.-+ |+ .-.-.++++|.+.|...-
T Consensus 343 I~t~py~~~ei~~Il~iR------------~~-~E~v~i~~~al~~L~~ig 380 (398)
T PF06068_consen 343 IRTKPYSEEEIKQILKIR------------AK-EEDVEISEDALDLLTKIG 380 (398)
T ss_dssp EEE----HHHHHHHHHHH------------HH-HCT--B-HHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHhh------------hh-hhcCcCCHHHHHHHHHHh
Confidence 666666655554444411 22 235678888888776443
No 238
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00061 Score=73.45 Aligned_cols=130 Identities=16% Similarity=0.181 Sum_probs=75.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccc---eeecCccccceee--ecceeeecCCceeeccccccC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTA---YITKDPETRQMVL--QTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta---~~~~~~~~~~~~~--~~G~l~lad~gI~~IDEidkm 421 (720)
-.||+||+|+||+++++.+++.+-.... .+.......+.. ....-...++..- .... ..++..|++||++|+|
T Consensus 28 a~Lf~G~~G~Gk~~la~~~a~~l~c~~~-~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p-~~~~~kv~iI~~ad~m 105 (313)
T PRK05564 28 AHIIVGEDGIGKSLLAKEIALKILGKSQ-QREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKP-YEGDKKVIIIYNSEKM 105 (313)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHcCCCC-CCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCc-ccCCceEEEEechhhc
Confidence 3489999999999999999986522100 000000000000 0000000000000 0001 2345679999999999
Q ss_pred ChHHHHHHHHHHHhceEeeeccCeEEeecCce-EEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHH
Q psy17703 422 SDTTRSILHEVMEQQTLSIAKAGIICQLNART-SILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQF 500 (720)
Q Consensus 422 ~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~-~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~ 500 (720)
+.+..++|+..+|+- |..+ .|+.|.||. .+.+++.||+- ++.+..++.++.
T Consensus 106 ~~~a~naLLK~LEep-------------p~~t~~il~~~~~~--------------~ll~TI~SRc~-~~~~~~~~~~~~ 157 (313)
T PRK05564 106 TEQAQNAFLKTIEEP-------------PKGVFIILLCENLE--------------QILDTIKSRCQ-IYKLNRLSKEEI 157 (313)
T ss_pred CHHHHHHHHHHhcCC-------------CCCeEEEEEeCChH--------------hCcHHHHhhce-eeeCCCcCHHHH
Confidence 999999999999852 2223 344444442 48899999995 777877777665
Q ss_pred HHHHHh
Q psy17703 501 DARLAR 506 (720)
Q Consensus 501 d~~la~ 506 (720)
...+.+
T Consensus 158 ~~~l~~ 163 (313)
T PRK05564 158 EKFISY 163 (313)
T ss_pred HHHHHH
Confidence 544443
No 239
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=97.75 E-value=0.00044 Score=76.40 Aligned_cols=212 Identities=16% Similarity=0.187 Sum_probs=121.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC-
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS- 422 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~- 422 (720)
.+.|++=.||.|||||.+-+- ++|.+...+|-..+.+-|.... .++ +.|.+.. -.++++||+..++
T Consensus 207 ~N~NliELgPrGTGKS~vy~e---iSp~~~liSGG~~T~A~LFyn~----~~~----~~GlV~~--~D~VafDEv~~i~f 273 (457)
T PF13337_consen 207 RNYNLIELGPRGTGKSYVYKE---ISPYGILISGGQVTVAKLFYNM----STG----QIGLVGR--WDVVAFDEVAGIKF 273 (457)
T ss_pred cccceEEEcCCCCCceeehhh---cCcccEEEECCCcchHHheeec----cCC----cceeeee--ccEEEEEeccCccc
Confidence 678999999999999977554 3465666666555554443221 112 3455433 4578999998875
Q ss_pred --hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCC--CCCCcc----cccccCCChhhhccceeEEEecC
Q psy17703 423 --DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQ--WNTSKT----IIDNIRLPHTLLSRFDLIFLLLD 494 (720)
Q Consensus 423 --~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~--~~~~~~----~~~~~~l~~aLlsRFdli~~l~d 494 (720)
++....|...||.+..+..+ .+..+.++++...|....- ...... +.+.++ ..|++|||...+.=..
T Consensus 274 ~d~d~i~imK~YMesG~fsRG~----~~i~a~as~vf~GNi~~~v~~~~~~~~lf~~lP~~~~-DsAflDRiH~~iPGWe 348 (457)
T PF13337_consen 274 KDKDEIQIMKDYMESGSFSRGK----EEINADASMVFVGNINQSVENMLKTSHLFEPLPEEMR-DSAFLDRIHGYIPGWE 348 (457)
T ss_pred CChHHHHHHHHHHhccceeecc----cccccceeEEEEcCcCCcchhccccchhhhhcCHHHH-HHHHHhHhheeccCcc
Confidence 45567888999999988744 3667788888888865211 111111 122223 6788999964332112
Q ss_pred CChHHHHHHHHhhc--chhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703 495 PQSEQFDARLARHL--DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK 572 (720)
Q Consensus 495 ~~~~~~d~~la~~i--~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~ 572 (720)
.|.- ....+..+. ..+.+.+++..-|.. ......+.|.++ +-.++.|.-.++.|++.+.-|
T Consensus 349 iPk~-~~e~~t~~~gl~~Dy~aE~l~~LR~~--------~~~~~~~~~~~l--------g~~~~~RD~~AV~kt~SgllK 411 (457)
T PF13337_consen 349 IPKI-RPEMFTNGYGLIVDYFAEILHELRKQ--------SYSDAVDKYFKL--------GSNLSQRDTKAVKKTVSGLLK 411 (457)
T ss_pred cccc-CHHHccCCceeeHHHHHHHHHHHHHH--------HHHHHHHhhEee--------CCCcchhhHHHHHHHHHHHHH
Confidence 2110 112222221 233333333333321 011111222211 112456989999999888888
Q ss_pred Hc-CCCCCCHHhHHHHHHH
Q psy17703 573 MR-YSETVEVQDVDEAWRL 590 (720)
Q Consensus 573 l~-~~~~V~~~Dv~~Ai~l 590 (720)
|- -...++.+|+++.++.
T Consensus 412 LL~P~~~~~~ee~~~~l~~ 430 (457)
T PF13337_consen 412 LLFPHGEFTKEELEECLRP 430 (457)
T ss_pred hhCCCCCCCHHHHHHHHHH
Confidence 75 3467888888887765
No 240
>KOG0732|consensus
Probab=97.75 E-value=3e-05 Score=92.67 Aligned_cols=125 Identities=23% Similarity=0.314 Sum_probs=77.0
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCcc----ccCCccccccccceeecCccccceeeecc----ee----eecCCceee
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQY----TSGKGSSAVGLTAYITKDPETRQMVLQTG----AL----VLADSGVCC 414 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~----~~g~~ss~~glta~~~~~~~~~~~~~~~G----~l----~lad~gI~~ 414 (720)
-||++||||||||.++++++...++..- ..-++.. ....|+.++- .+ -..--.|+|
T Consensus 301 gvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD------------~lskwvgEaERqlrllFeeA~k~qPSIIf 368 (1080)
T KOG0732|consen 301 GVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD------------CLSKWVGEAERQLRLLFEEAQKTQPSIIF 368 (1080)
T ss_pred ceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch------------hhccccCcHHHHHHHHHHHHhccCceEEe
Confidence 4999999999999999999987765311 1111111 1112222211 00 011236999
Q ss_pred ccccccCCh-----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhh
Q psy17703 415 IDEFDKMSD-----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLL 483 (720)
Q Consensus 415 IDEidkm~~-----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLl 483 (720)
.||||-+.+ .....|+..|+ |.. -...+.+|+|+|... .+.+||.
T Consensus 369 fdeIdGlapvrSskqEqih~SIvSTLLaLmd---------Gld--sRgqVvvigATnRpd-------------a~dpaLR 424 (1080)
T KOG0732|consen 369 FDEIDGLAPVRSSKQEQIHASIVSTLLALMD---------GLD--SRGQVVVIGATNRPD-------------AIDPALR 424 (1080)
T ss_pred ccccccccccccchHHHhhhhHHHHHHHhcc---------CCC--CCCceEEEcccCCcc-------------ccchhhc
Confidence 999996544 12334444442 211 124678999999765 4778885
Q ss_pred c--cceeEEEecCCChHHHHHHHHhh
Q psy17703 484 S--RFDLIFLLLDPQSEQFDARLARH 507 (720)
Q Consensus 484 s--RFdli~~l~d~~~~~~d~~la~~ 507 (720)
+ |||-.|.+..|+.+.+...+..|
T Consensus 425 RPgrfdref~f~lp~~~ar~~Il~Ih 450 (1080)
T KOG0732|consen 425 RPGRFDREFYFPLPDVDARAKILDIH 450 (1080)
T ss_pred CCcccceeEeeeCCchHHHHHHHHHh
Confidence 5 99999999888877776666655
No 241
>KOG0741|consensus
Probab=97.73 E-value=7.9e-06 Score=89.80 Aligned_cols=126 Identities=22% Similarity=0.297 Sum_probs=70.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCC--ccccCCc--cccccccceeecCc---cccceeeecceeeecCCceeeccccc
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRS--QYTSGKG--SSAVGLTAYITKDP---ETRQMVLQTGALVLADSGVCCIDEFD 419 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~--~~~~g~~--ss~~glta~~~~~~---~~~~~~~~~G~l~lad~gI~~IDEid 419 (720)
-+||+||||||||.+||.+-+.+..- -.+.|-. +-.+|.+-.-+++- ...+|.-. |+ -+.=.|+++||+|
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~-g~--~SgLHIIIFDEiD 334 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRL-GA--NSGLHIIIFDEID 334 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhh-Cc--cCCceEEEehhhH
Confidence 68999999999999999999877210 1111211 11122222111110 01122211 11 0112488999998
Q ss_pred cCCh-------------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--
Q psy17703 420 KMSD-------------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS-- 484 (720)
Q Consensus 420 km~~-------------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls-- 484 (720)
.+-+ ...+.|+.-|+ ....|+ +..+|+-+|... -++.|||+
T Consensus 335 AICKqRGS~~g~TGVhD~VVNQLLsKmD----------GVeqLN-NILVIGMTNR~D-------------lIDEALLRPG 390 (744)
T KOG0741|consen 335 AICKQRGSMAGSTGVHDTVVNQLLSKMD----------GVEQLN-NILVIGMTNRKD-------------LIDEALLRPG 390 (744)
T ss_pred HHHHhcCCCCCCCCccHHHHHHHHHhcc----------cHHhhh-cEEEEeccCchh-------------hHHHHhcCCC
Confidence 7532 23344444442 222232 478999999654 47788888
Q ss_pred cceeEEEecCCChHH
Q psy17703 485 RFDLIFLLLDPQSEQ 499 (720)
Q Consensus 485 RFdli~~l~d~~~~~ 499 (720)
||.+...+.-|++.-
T Consensus 391 RlEVqmEIsLPDE~g 405 (744)
T KOG0741|consen 391 RLEVQMEISLPDEKG 405 (744)
T ss_pred ceEEEEEEeCCCccC
Confidence 998888777665543
No 242
>KOG1051|consensus
Probab=97.66 E-value=0.00011 Score=87.16 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=71.7
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCc----cccccccceeecCccccceeeecceeeecCCceeec
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKG----SSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCI 415 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~----ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~I 415 (720)
.+.-+||.||.|+|||.|++++|..+-.+ +...... +-..|...+++.....++. .+++-.....|+++
T Consensus 590 ~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~L---teavrrrP~sVVLf 666 (898)
T KOG1051|consen 590 PDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQL---TEAVKRRPYSVVLF 666 (898)
T ss_pred CCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHH---HHHHhcCCceEEEE
Confidence 45689999999999999999999976321 1111111 1111221111111111111 12333344679999
Q ss_pred cccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccC
Q psy17703 416 DEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP 461 (720)
Q Consensus 416 DEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp 461 (720)
|||+|++++.++.|+++|+.+.++-. .|....+ .++.||.|+|-
T Consensus 667 deIEkAh~~v~n~llq~lD~GrltDs-~Gr~Vd~-kN~I~IMTsn~ 710 (898)
T KOG1051|consen 667 EEIEKAHPDVLNILLQLLDRGRLTDS-HGREVDF-KNAIFIMTSNV 710 (898)
T ss_pred echhhcCHHHHHHHHHHHhcCccccC-CCcEeec-cceEEEEeccc
Confidence 99999999999999999999998853 3444433 45788888874
No 243
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=9.1e-05 Score=80.87 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=47.3
Q ss_pred ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceE-EEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTS-ILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~-iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
-|++|||++.|+....++|+..||+-. .++. ++.+.+|. .+.+++.||+ ..
T Consensus 143 rVviIDeAd~l~~~aanaLLk~LEEpp-------------~~~~fiLit~~~~--------------~llptIrSRc-~~ 194 (351)
T PRK09112 143 RIVIIDPADDMNRNAANAILKTLEEPP-------------ARALFILISHSSG--------------RLLPTIRSRC-QP 194 (351)
T ss_pred eEEEEEchhhcCHHHHHHHHHHHhcCC-------------CCceEEEEECChh--------------hccHHHHhhc-cE
Confidence 499999999999999999999998631 2222 33344432 3679999999 48
Q ss_pred EEecCCChHHHHHH
Q psy17703 490 FLLLDPQSEQFDAR 503 (720)
Q Consensus 490 ~~l~d~~~~~~d~~ 503 (720)
+.+.+++.++....
T Consensus 195 i~l~pl~~~~~~~~ 208 (351)
T PRK09112 195 ISLKPLDDDELKKA 208 (351)
T ss_pred EEecCCCHHHHHHH
Confidence 88888877654433
No 244
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.00028 Score=77.45 Aligned_cols=69 Identities=29% Similarity=0.332 Sum_probs=50.4
Q ss_pred ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCce-EEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNART-SILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~-~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
-|++|||++.|+...+++|+..+|+- +.++ .|+.|.+|. .+.+++.||+. .
T Consensus 143 kVviIDead~m~~~aanaLLK~LEep-------------p~~~~~IL~t~~~~--------------~llpti~SRc~-~ 194 (365)
T PRK07471 143 RVVIVDTADEMNANAANALLKVLEEP-------------PARSLFLLVSHAPA--------------RLLPTIRSRCR-K 194 (365)
T ss_pred EEEEEechHhcCHHHHHHHHHHHhcC-------------CCCeEEEEEECCch--------------hchHHhhccce-E
Confidence 48999999999999999999999863 2223 344444432 36789999996 6
Q ss_pred EEecCCChHHHHHHHHhh
Q psy17703 490 FLLLDPQSEQFDARLARH 507 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~ 507 (720)
+.+.+++.++....+..+
T Consensus 195 i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 195 LRLRPLAPEDVIDALAAA 212 (365)
T ss_pred EECCCCCHHHHHHHHHHh
Confidence 778877777766666544
No 245
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.00027 Score=75.95 Aligned_cols=68 Identities=25% Similarity=0.311 Sum_probs=49.6
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceE-EEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTS-ILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL 488 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~-iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl 488 (720)
..|++||+.|+|+....++|+..||+- |.++. |+.|.||. .|.|+++||+-
T Consensus 114 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~~~fiL~~~~~~--------------~lLpTIrSRCq- 165 (319)
T PRK08769 114 AQVVIVDPADAINRAACNALLKTLEEP-------------SPGRYLWLISAQPA--------------RLPATIRSRCQ- 165 (319)
T ss_pred cEEEEeccHhhhCHHHHHHHHHHhhCC-------------CCCCeEEEEECChh--------------hCchHHHhhhe-
Confidence 459999999999999999999999963 23343 34444433 48899999996
Q ss_pred EEEecCCChHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLA 505 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la 505 (720)
.+.+..++.++...-|.
T Consensus 166 ~i~~~~~~~~~~~~~L~ 182 (319)
T PRK08769 166 RLEFKLPPAHEALAWLL 182 (319)
T ss_pred EeeCCCcCHHHHHHHHH
Confidence 66677776665554444
No 246
>PRK06921 hypothetical protein; Provisional
Probab=97.55 E-value=1.4e-05 Score=84.00 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.-+++|+|+||+|||.|+.++++.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 45899999999999999999998664
No 247
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.50 E-value=0.00012 Score=66.00 Aligned_cols=99 Identities=20% Similarity=0.286 Sum_probs=54.4
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH---
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT--- 424 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~--- 424 (720)
|+|+|+||+|||.+++.+++.+-+...... .. ....+.+...-|. | .....++++|||......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~--~~-----~vy~~~~~~~~w~---g---Y~~q~vvi~DD~~~~~~~~~~ 67 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPT--KD-----SVYTRNPGDKFWD---G---YQGQPVVIIDDFGQDNDGYNY 67 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCC--CC-----cEEeCCCccchhh---c---cCCCcEEEEeecCccccccch
Confidence 579999999999999998875532210000 00 0011111111110 1 113578999999888754
Q ss_pred -HHHHHHHHHHhceEeeeccCeE---EeecCceEEEeccc
Q psy17703 425 -TRSILHEVMEQQTLSIAKAGII---CQLNARTSILAAAN 460 (720)
Q Consensus 425 -~~~~L~e~mE~~~vsi~k~g~~---~~l~a~~~iiaaaN 460 (720)
....|..++.........++.. ..+++ -.|++++|
T Consensus 68 ~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s-~~vi~tsN 106 (107)
T PF00910_consen 68 SDESELIRLISSNPFQPNMADLEDKGTPFNS-KLVIITSN 106 (107)
T ss_pred HHHHHHHHHHhcCCcccccccHhhCCCccCC-CEEEEcCC
Confidence 4556777777666655444432 22232 34666666
No 248
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.00046 Score=74.66 Aligned_cols=71 Identities=21% Similarity=0.192 Sum_probs=50.9
Q ss_pred cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703 408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD 487 (720)
Q Consensus 408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd 487 (720)
+...|++||+++.|++..+++|+..||+.. . ..+.|+.+.|+. .+++++.||+-
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-----~-------~~~~Ilvth~~~--------------~ll~ti~SRc~ 165 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPP-----P-------QVVFLLVSHAAD--------------KVLPTIKSRCR 165 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCc-----C-------CCEEEEEeCChH--------------hChHHHHHHhh
Confidence 345699999999999999999999998642 0 113445555543 48899999995
Q ss_pred eEEEecCCChHHHHHHHH
Q psy17703 488 LIFLLLDPQSEQFDARLA 505 (720)
Q Consensus 488 li~~l~d~~~~~~d~~la 505 (720)
++.+.+++.++...-+.
T Consensus 166 -~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 166 -KMVLPAPSHEEALAYLR 182 (325)
T ss_pred -hhcCCCCCHHHHHHHHH
Confidence 67777777666554444
No 249
>KOG0736|consensus
Probab=97.45 E-value=0.0017 Score=75.01 Aligned_cols=136 Identities=17% Similarity=0.148 Sum_probs=84.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecC-------ccccceeeecceeeecCCceeeccc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKD-------PETRQMVLQTGALVLADSGVCCIDE 417 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~-------~~~~~~~~~~G~l~lad~gI~~IDE 417 (720)
..-+||.|+||+|||++.+++++.+...++.-. ...+++..... -..+....+|--+.+.+-.++-||-
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evd----c~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~ 506 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGLHLLEVD----CYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQ 506 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCCceEecc----HHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecC
Confidence 458999999999999999999999877665311 11111110000 0111223355566677777777777
Q ss_pred cccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCCh
Q psy17703 418 FDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQS 497 (720)
Q Consensus 418 idkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~ 497 (720)
..--.-..+..++..|+..... .-..+..++|+++... ++|+.+.+-|-..+.+.-+.+
T Consensus 507 dgged~rl~~~i~~~ls~e~~~--------~~~~~~ivv~t~~s~~-------------~lp~~i~~~f~~ei~~~~lse 565 (953)
T KOG0736|consen 507 DGGEDARLLKVIRHLLSNEDFK--------FSCPPVIVVATTSSIE-------------DLPADIQSLFLHEIEVPALSE 565 (953)
T ss_pred CCchhHHHHHHHHHHHhccccc--------CCCCceEEEEeccccc-------------cCCHHHHHhhhhhccCCCCCH
Confidence 6644444455666655411111 1123578889888655 699999998887788887877
Q ss_pred HHHHHHHH
Q psy17703 498 EQFDARLA 505 (720)
Q Consensus 498 ~~~d~~la 505 (720)
+++.+.+.
T Consensus 566 ~qRl~iLq 573 (953)
T KOG0736|consen 566 EQRLEILQ 573 (953)
T ss_pred HHHHHHHH
Confidence 77655544
No 250
>PRK12377 putative replication protein; Provisional
Probab=97.44 E-value=2.2e-05 Score=81.40 Aligned_cols=116 Identities=17% Similarity=0.245 Sum_probs=64.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcccccccccee----ecCccccceeeecceeeecCCceeecccc--
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYI----TKDPETRQMVLQTGALVLADSGVCCIDEF-- 418 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~----~~~~~~~~~~~~~G~l~lad~gI~~IDEi-- 418 (720)
..+++|+|+||||||.|+.++++.+... |. +....+..- .+...........-.-.+..-.+++|||+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~----g~--~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~ 174 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK----GR--SVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGI 174 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc----CC--CeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCC
Confidence 4689999999999999999999876421 11 111111100 00000000000000001345679999999
Q ss_pred ccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703 419 DKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF 486 (720)
Q Consensus 419 dkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF 486 (720)
...++..+..|+++++.+.- .+..++-|+|-....|.. .+...++||.
T Consensus 175 ~~~s~~~~~~l~~ii~~R~~------------~~~ptiitSNl~~~~l~~--------~~~~ri~dRl 222 (248)
T PRK12377 175 QRETKNEQVVLNQIIDRRTA------------SMRSVGMLTNLNHEAMST--------LLGERVMDRM 222 (248)
T ss_pred CCCCHHHHHHHHHHHHHHHh------------cCCCEEEEcCCCHHHHHH--------HhhHHHHHHH
Confidence 45567778899999886642 123456667755433322 2556777776
No 251
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.44 E-value=0.00068 Score=77.05 Aligned_cols=84 Identities=21% Similarity=0.198 Sum_probs=58.1
Q ss_pred cceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChh
Q psy17703 402 TGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHT 481 (720)
Q Consensus 402 ~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~a 481 (720)
.|+|..|++|++=+=|+-|.+.+...-|+.+-+++.+.- .+....++.+-.|||.+|... |+..+ +-.-..|
T Consensus 248 ~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~--~~~~~~i~~D~vIiaHsNE~E--~~~F~----~nk~nEA 319 (644)
T PRK15455 248 SGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNG--TEGIGAIPFDGIILAHSNESE--WQTFR----NNKNNEA 319 (644)
T ss_pred CchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccC--CCCcceeccceeEEecCCHHH--HHHHh----cCccchh
Confidence 478888998887555888888887777777777776632 344557788999999999643 32221 1234589
Q ss_pred hhccceeEEEecC
Q psy17703 482 LLSRFDLIFLLLD 494 (720)
Q Consensus 482 LlsRFdli~~l~d 494 (720)
|++|+- ++.+++
T Consensus 320 ~~DRi~-~V~VPY 331 (644)
T PRK15455 320 FLDRIY-IVKVPY 331 (644)
T ss_pred hhceEE-EEeCCc
Confidence 999995 455543
No 252
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.00067 Score=73.05 Aligned_cols=69 Identities=26% Similarity=0.362 Sum_probs=51.2
Q ss_pred cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCce-EEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703 408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNART-SILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF 486 (720)
Q Consensus 408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~-~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF 486 (720)
+...|++||++++|+....++|+..||+-. ++ .|+.|.||. .|.+++.||+
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp--------------~~~fILi~~~~~--------------~Ll~TI~SRc 174 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPG--------------NGTLILIAPSPE--------------SLLPTIVSRC 174 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCC--------------CCeEEEEECChH--------------hCcHHHHhhc
Confidence 456799999999999999999999998632 22 234444442 5899999999
Q ss_pred eeEEEecCCChHHHHHHHH
Q psy17703 487 DLIFLLLDPQSEQFDARLA 505 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la 505 (720)
- ++.+..+.+++....+.
T Consensus 175 q-~i~f~~l~~~~~~~~L~ 192 (314)
T PRK07399 175 Q-IIPFYRLSDEQLEQVLK 192 (314)
T ss_pred e-EEecCCCCHHHHHHHHH
Confidence 5 77787777776655544
No 253
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.36 E-value=0.0011 Score=77.42 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.8
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
++|+||||+|||++++.+++.+..
T Consensus 113 llL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 113 LLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh
Confidence 889999999999999999987753
No 254
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.00072 Score=72.70 Aligned_cols=133 Identities=19% Similarity=0.233 Sum_probs=77.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccc---cCCcc------ccccccceeecCccccc-ee---ee------cceee
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT---SGKGS------SAVGLTAYITKDPETRQ-MV---LQ------TGALV 406 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~---~g~~s------s~~glta~~~~~~~~~~-~~---~~------~G~l~ 406 (720)
.-+||.||.|+||+.+++++++.+-..... +|.=. ...+-....+.....+. .. .+ ...-.
T Consensus 26 hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~ 105 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQ 105 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCcc
Confidence 358999999999999999999966322110 11000 00000000011000000 00 00 00011
Q ss_pred ecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceE-EEecccCCCCCCCCCcccccccCCChhhhcc
Q psy17703 407 LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTS-ILAAANPCDSQWNTSKTIIDNIRLPHTLLSR 485 (720)
Q Consensus 407 lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~-iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsR 485 (720)
.+...|++||++++|+....++|+..+|+- |.++. |+.|.||. ++.|+++||
T Consensus 106 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~--------------~lLpTI~SR 158 (319)
T PRK06090 106 LNGYRLFVIEPADAMNESASNALLKTLEEP-------------APNCLFLLVTHNQK--------------RLLPTIVSR 158 (319)
T ss_pred cCCceEEEecchhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh--------------hChHHHHhc
Confidence 223459999999999999999999999863 23333 44455544 488999999
Q ss_pred ceeEEEecCCChHHHHHHHHh
Q psy17703 486 FDLIFLLLDPQSEQFDARLAR 506 (720)
Q Consensus 486 Fdli~~l~d~~~~~~d~~la~ 506 (720)
+- .+.+..++.++...-+..
T Consensus 159 Cq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 159 CQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred ce-eEeCCCCCHHHHHHHHHH
Confidence 96 677877777665555543
No 255
>KOG2680|consensus
Probab=97.30 E-value=0.0064 Score=63.20 Aligned_cols=181 Identities=20% Similarity=0.216 Sum_probs=114.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT 424 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~ 424 (720)
..-.||.||+|-=|+..-..+... .-+|.-+..+-. -.|++||||.+-++-+
T Consensus 252 G~lALFsGdTGEIr~EvRdqin~K--------------------------V~eWreEGKAei--vpGVLFIDEvHMLDIE 303 (454)
T KOG2680|consen 252 GFLALFSGDTGEIRSEVRDQINTK--------------------------VAEWREEGKAEI--VPGVLFIDEVHMLDIE 303 (454)
T ss_pred ceEEEEeCCcccccHHHHHHHHHH--------------------------HHHHHhcCCeee--ccceEEEeeehhhhhH
Confidence 356789999998887654444221 113333322211 2689999999999998
Q ss_pred HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHH
Q psy17703 425 TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARL 504 (720)
Q Consensus 425 ~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~l 504 (720)
-.+.|..++|...-- .++.|+|.-..+-.+. .......+|-.|++|. |++...+...++....|
T Consensus 304 cFsFlNrAlE~d~~P--------------iiimaTNrgit~iRGT-n~~SphGiP~D~lDR~-lII~t~py~~~d~~~IL 367 (454)
T KOG2680|consen 304 CFSFLNRALENDMAP--------------IIIMATNRGITRIRGT-NYRSPHGIPIDLLDRM-LIISTQPYTEEDIKKIL 367 (454)
T ss_pred HHHHHHHHhhhccCc--------------EEEEEcCCceEEeecC-CCCCCCCCcHHHhhhh-heeecccCcHHHHHHHH
Confidence 899999999865322 2444555322111110 0011236999999999 56666666666554444
Q ss_pred HhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhH
Q psy17703 505 ARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDV 584 (720)
Q Consensus 505 a~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv 584 (720)
.-. + +.-...++++|.+.|...-. ..+.|....|+..|.-.|.-+....|+.+|+
T Consensus 368 ~iR------------c-~EEdv~m~~~A~d~Lt~i~~------------~tsLRYai~Lit~a~~~~~krk~~~v~~~di 422 (454)
T KOG2680|consen 368 RIR------------C-QEEDVEMNPDALDLLTKIGE------------ATSLRYAIHLITAASLVCLKRKGKVVEVDDI 422 (454)
T ss_pred Hhh------------h-hhhccccCHHHHHHHHHhhh------------hhhHHHHHHHHHHHHHHHHHhcCceeehhHH
Confidence 321 1 11244677888877763211 1234778888888888888888899999999
Q ss_pred HHHHHHHHHH
Q psy17703 585 DEAWRLHREA 594 (720)
Q Consensus 585 ~~Ai~l~~~~ 594 (720)
+.|.+||-+.
T Consensus 423 ~r~y~LFlD~ 432 (454)
T KOG2680|consen 423 ERVYRLFLDE 432 (454)
T ss_pred HHHHHHHhhh
Confidence 9999998643
No 256
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.30 E-value=0.0024 Score=64.64 Aligned_cols=135 Identities=16% Similarity=0.169 Sum_probs=73.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC----CCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP----RSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p----r~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
-||||+|--|||||+|++++..... |.+-.+- .....+..- ...... ....-|+|+|++.-=
T Consensus 86 NnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k--~dl~~Lp~l------~~~Lr~------~~~kFIlFcDDLSFe 151 (287)
T COG2607 86 NNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDK--EDLATLPDL------VELLRA------RPEKFILFCDDLSFE 151 (287)
T ss_pred cceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcH--HHHhhHHHH------HHHHhc------CCceEEEEecCCCCC
Confidence 5999999999999999999987542 1111000 000000000 000000 123568999997432
Q ss_pred Ch-HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCC---CCCCCCccc------ccccCCChhhhccceeEEE
Q psy17703 422 SD-TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD---SQWNTSKTI------IDNIRLPHTLLSRFDLIFL 491 (720)
Q Consensus 422 ~~-~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~---g~~~~~~~~------~~~~~l~~aLlsRFdli~~ 491 (720)
.. +.--+|-.+|| |.....|+++.+-||+|... ..|..+... .+.+.=--+|-+||-|-..
T Consensus 152 ~gd~~yK~LKs~Le---------G~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~ 222 (287)
T COG2607 152 EGDDAYKALKSALE---------GGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLS 222 (287)
T ss_pred CCchHHHHHHHHhc---------CCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeec
Confidence 22 23446666664 44556689999999999531 111111111 1111111256679998888
Q ss_pred ecCCChHHHHHH
Q psy17703 492 LLDPQSEQFDAR 503 (720)
Q Consensus 492 l~d~~~~~~d~~ 503 (720)
+.+...+++-.+
T Consensus 223 F~~~~Q~~YL~~ 234 (287)
T COG2607 223 FYPCDQDEYLKI 234 (287)
T ss_pred ccCCCHHHHHHH
Confidence 877766655433
No 257
>KOG2035|consensus
Probab=97.25 E-value=0.0011 Score=68.31 Aligned_cols=69 Identities=22% Similarity=0.395 Sum_probs=54.8
Q ss_pred ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703 411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF 490 (720)
Q Consensus 411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~ 490 (720)
.++.|.|.|++..+.|.+|++.||... ..|.+|-.+|... ++-+|+.||+ +.+
T Consensus 129 Kvvvi~ead~LT~dAQ~aLRRTMEkYs-------------~~~RlIl~cns~S-------------riIepIrSRC-l~i 181 (351)
T KOG2035|consen 129 KVVVINEADELTRDAQHALRRTMEKYS-------------SNCRLILVCNSTS-------------RIIEPIRSRC-LFI 181 (351)
T ss_pred EEEEEechHhhhHHHHHHHHHHHHHHh-------------cCceEEEEecCcc-------------cchhHHhhhe-eEE
Confidence 478999999999999999999999653 3456677777432 5789999999 678
Q ss_pred EecCCChHHHHHHHHh
Q psy17703 491 LLLDPQSEQFDARLAR 506 (720)
Q Consensus 491 ~l~d~~~~~~d~~la~ 506 (720)
.++.|++++.-..+..
T Consensus 182 Rvpaps~eeI~~vl~~ 197 (351)
T KOG2035|consen 182 RVPAPSDEEITSVLSK 197 (351)
T ss_pred eCCCCCHHHHHHHHHH
Confidence 8999998887665553
No 258
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=97.23 E-value=0.0024 Score=73.47 Aligned_cols=215 Identities=17% Similarity=0.225 Sum_probs=117.1
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC-
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS- 422 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~- 422 (720)
.+.|++=.||-|||||.+-+ +++|.+...+|-..+.+-|.... .++ +.|.+-+ -.++++||+..+.
T Consensus 215 ~N~Nl~ELgPrgTGKS~~y~---eiSp~~~liSGG~~T~A~LFyn~----~~~----~~GlVg~--~D~VaFDEva~i~f 281 (675)
T TIGR02653 215 NNYNLCELGPRGTGKSHVYK---ECSPNSILMSGGQTTVANLFYNM----STR----QIGLVGM--WDVVAFDEVAGIEF 281 (675)
T ss_pred cccceEEECCCCCCcceeee---ccCCceEEEECCccchhHeeEEc----CCC----ceeEEee--ccEEEEeecccccc
Confidence 67899999999999997766 45677777776655555443221 111 3454332 4578999997653
Q ss_pred --hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCC--CC----CCCcccccccCCChhhhccceeEEEecC
Q psy17703 423 --DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDS--QW----NTSKTIIDNIRLPHTLLSRFDLIFLLLD 494 (720)
Q Consensus 423 --~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g--~~----~~~~~~~~~~~l~~aLlsRFdli~~l~d 494 (720)
++..+.|-..|+.+.++..+ .+..+.++++.-.|-... .- .-...+.+.++-..||++||.-.+.=..
T Consensus 282 ~d~d~v~imK~YM~sG~FsRG~----~~~~a~as~vfvGNi~~~v~~~~k~~~lf~~lP~~~~~DsAflDRiH~yiPGWe 357 (675)
T TIGR02653 282 KDKDGVQIMKDYMASGSFARGK----ESIEGKASIVFVGNINQSVETLVKTSHLFAPFPEAMRIDTAFFDRFHYYIPGWE 357 (675)
T ss_pred CCHHHHHHHHHHhhcCcccccc----cccccceeEEEEcccCCchHHHhhcccccccCChhhcccchHHHHhhccCcCCc
Confidence 44566788889999887633 244466666665553311 00 0011112222235688888852221111
Q ss_pred CChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHH-
Q psy17703 495 PQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKM- 573 (720)
Q Consensus 495 ~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l- 573 (720)
.|. -..+.+..+. -+.-.|++.+-..++. .......+.|..+ +-.++.|.-.++.|+.-++-|+
T Consensus 358 iPk-~~~e~~t~~y--Gl~~DylsE~l~~lR~----~~~~~~~~~~~~l--------~~~~~~RD~~aV~kt~SgllKLl 422 (675)
T TIGR02653 358 IPK-MRPEYFTNRY--GFIVDYLAEYMREMRK----RSFADAIDRFFKL--------GNNLNQRDVIAVRKTVSGLLKLL 422 (675)
T ss_pred Ccc-CCHHHcccCC--cchHHHHHHHHHHHHh----hhHHHHHHhhEec--------CCCCchhhHHHHHHHHHHHHHHh
Confidence 111 0111222221 2233333333222211 0011111222211 1235569999999999888888
Q ss_pred cCCCCCCHHhHHHHHHH
Q psy17703 574 RYSETVEVQDVDEAWRL 590 (720)
Q Consensus 574 ~~~~~V~~~Dv~~Ai~l 590 (720)
--...++.+|+++++++
T Consensus 423 ~P~~~~~~ee~e~~l~~ 439 (675)
T TIGR02653 423 YPDGEYTKDDVRECLTY 439 (675)
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 45678999999987765
No 259
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.22 E-value=0.00036 Score=79.51 Aligned_cols=66 Identities=30% Similarity=0.500 Sum_probs=61.3
Q ss_pred hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCC-CCCCC
Q psy17703 654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC-DSQWN 719 (720)
Q Consensus 654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~-~~~~~ 719 (720)
.|.+..++.|++|+||+++|+......|++.||++.+.|.+.|...++++++.++||+||. .|+|+
T Consensus 288 pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~ 354 (499)
T TIGR00368 288 PGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYG 354 (499)
T ss_pred hhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCC
Confidence 4556788999999999999999999999999999999999999999999999999999998 78885
No 260
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.18 E-value=0.00038 Score=79.10 Aligned_cols=66 Identities=26% Similarity=0.432 Sum_probs=61.5
Q ss_pred hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCC-CCCCC
Q psy17703 654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC-DSQWN 719 (720)
Q Consensus 654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~-~~~~~ 719 (720)
.|.+..+++|+.++||+..++.+....+++.||++.+.|.+.|...++++++-++||+||. .|.|+
T Consensus 287 pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~ 353 (506)
T PRK09862 287 PGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQ 353 (506)
T ss_pred hhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecC
Confidence 4667789999999999999999999999999999999999999999999999999999997 67664
No 261
>PRK08181 transposase; Validated
Probab=97.15 E-value=0.00011 Score=77.18 Aligned_cols=119 Identities=23% Similarity=0.314 Sum_probs=64.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCccccccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK 420 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk 420 (720)
.-|++|+||||||||.|+.+++..+-.. .|.+ ...+..........+. ...-.-.+..-.+++|||++.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-----~~~L~~~l~~a~~~~~--~~~~l~~l~~~dLLIIDDlg~ 178 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-----TTDLVQKLQVARRELQ--LESAIAKLDKFDLLILDDLAY 178 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-----HHHHHHHHHHHHhCCc--HHHHHHHHhcCCEEEEecccc
Confidence 4589999999999999999998755321 1111 0011100000000000 000000123456899999987
Q ss_pred CCh--HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703 421 MSD--TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF 486 (720)
Q Consensus 421 m~~--~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF 486 (720)
.+. ..+..|+++++.+.- +.++|-|+|-....|.... ....+..+++||.
T Consensus 179 ~~~~~~~~~~Lf~lin~R~~-------------~~s~IiTSN~~~~~w~~~~---~D~~~a~aildRL 230 (269)
T PRK08181 179 VTKDQAETSVLFELISARYE-------------RRSILITANQPFGEWNRVF---PDPAMTLAAVDRL 230 (269)
T ss_pred ccCCHHHHHHHHHHHHHHHh-------------CCCEEEEcCCCHHHHHHhc---CCccchhhHHHhh
Confidence 755 345678888875421 1256778887766665421 1123556777887
No 262
>PRK08116 hypothetical protein; Validated
Probab=97.15 E-value=6e-05 Score=79.36 Aligned_cols=116 Identities=13% Similarity=0.214 Sum_probs=62.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCccccccccceeecCccccce-eeeccee-eecCCceeecccc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTAYITKDPETRQM-VLQTGAL-VLADSGVCCIDEF 418 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta~~~~~~~~~~~-~~~~G~l-~lad~gI~~IDEi 418 (720)
+..++|+|+||||||.|+.++++.+-.. .|.+. ..+...+ +....... ..+...+ .+.+..+++|||+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~-----~~ll~~i-~~~~~~~~~~~~~~~~~~l~~~dlLviDDl 187 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF-----PQLLNRI-KSTYKSSGKEDENEIIRSLVNADLLILDDL 187 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH-----HHHHHHH-HHHHhccccccHHHHHHHhcCCCEEEEecc
Confidence 4569999999999999999999865321 11110 0000000 00000000 0000000 1334579999999
Q ss_pred --ccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703 419 --DKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF 486 (720)
Q Consensus 419 --dkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF 486 (720)
.+.++..+..|+++++.+. .....+|.|+|-....+ .. .+...+.||+
T Consensus 188 g~e~~t~~~~~~l~~iin~r~------------~~~~~~IiTsN~~~~eL------~~--~~~~ri~sRl 237 (268)
T PRK08116 188 GAERDTEWAREKVYNIIDSRY------------RKGLPTIVTTNLSLEEL------KN--QYGKRIYDRI 237 (268)
T ss_pred cCCCCCHHHHHHHHHHHHHHH------------HCCCCEEEECCCCHHHH------HH--HHhHHHHHHH
Confidence 5567777888998887642 11234677777443221 11 1346778884
No 263
>KOG1514|consensus
Probab=97.07 E-value=0.0076 Score=69.28 Aligned_cols=200 Identities=20% Similarity=0.230 Sum_probs=111.2
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhC---------CCCccccCCcccccccccee--ecCccccce------------ee-e
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLV---------PRSQYTSGKGSSAVGLTAYI--TKDPETRQM------------VL-Q 401 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~---------pr~~~~~g~~ss~~glta~~--~~~~~~~~~------------~~-~ 401 (720)
.-+.+.|-||||||..++.|.+.+ |...|..-.+.-..+....+ .-...+++. .+ .
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 478999999999999998888733 44444432222111111100 000011110 00 1
Q ss_pred cceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChh
Q psy17703 402 TGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHT 481 (720)
Q Consensus 402 ~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~a 481 (720)
|+. ....-|++|||+|.|-...|..|+-+.+-- +.-+++..|||-+|... ||..
T Consensus 503 ~k~--~~~~~VvLiDElD~Lvtr~QdVlYn~fdWp----------t~~~sKLvvi~IaNTmd--------------lPEr 556 (767)
T KOG1514|consen 503 PKP--KRSTTVVLIDELDILVTRSQDVLYNIFDWP----------TLKNSKLVVIAIANTMD--------------LPER 556 (767)
T ss_pred CCC--CCCCEEEEeccHHHHhcccHHHHHHHhcCC----------cCCCCceEEEEeccccc--------------CHHH
Confidence 111 122358999999999888888888776521 22257889999998653 4444
Q ss_pred h-----hccceeE-EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCccc
Q psy17703 482 L-----LSRFDLI-FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISA 555 (720)
Q Consensus 482 L-----lsRFdli-~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~ 555 (720)
+ -||.++. +.+.+...+++...+...+ .-.-.+..+|.+.... .+. .+++
T Consensus 557 ~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL--------------~~~~~f~~~aielvar-kVA---------avSG 612 (767)
T KOG1514|consen 557 LLMNRVSSRLGLTRICFQPYTHEQLQEIISARL--------------KGLDAFENKAIELVAR-KVA---------AVSG 612 (767)
T ss_pred HhccchhhhccceeeecCCCCHHHHHHHHHHhh--------------cchhhcchhHHHHHHH-HHH---------hccc
Confidence 3 4577754 3344444444433333211 0012234455554443 221 2344
Q ss_pred CHHHHHHHHHHHHHHHHHcCC-------CCCCHHhHHHHHHHHHHHH
Q psy17703 556 YPRQLESLIRLSEAHAKMRYS-------ETVEVQDVDEAWRLHREAL 595 (720)
Q Consensus 556 t~R~le~lirla~A~A~l~~~-------~~V~~~Dv~~Ai~l~~~~l 595 (720)
..|....+.+-|...|.-+.. ..|+..|+.+|++=|..+.
T Consensus 613 DaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 613 DARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred cHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhh
Confidence 557777777777777766555 6789999999987554443
No 264
>PRK06526 transposase; Provisional
Probab=97.05 E-value=0.0002 Score=74.66 Aligned_cols=109 Identities=16% Similarity=0.219 Sum_probs=57.5
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC-
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS- 422 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~- 422 (720)
+.-|++|+||||||||.|+.+++..+...-+...- .+...+..........+.. ....-.+..-.+++|||++..+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f-~t~~~l~~~l~~~~~~~~~--~~~l~~l~~~dlLIIDD~g~~~~ 173 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF-ATAAQWVARLAAAHHAGRL--QAELVKLGRYPLLIVDEVGYIPF 173 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh-hhHHHHHHHHHHHHhcCcH--HHHHHHhccCCEEEEcccccCCC
Confidence 35689999999999999999998755221000000 0000000000000000000 0000012335689999999765
Q ss_pred -hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCC
Q psy17703 423 -DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT 468 (720)
Q Consensus 423 -~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~ 468 (720)
+..+..|+++++.+.- +.++|.++|-..+.|..
T Consensus 174 ~~~~~~~L~~li~~r~~-------------~~s~IitSn~~~~~w~~ 207 (254)
T PRK06526 174 EPEAANLFFQLVSSRYE-------------RASLIVTSNKPFGRWGE 207 (254)
T ss_pred CHHHHHHHHHHHHHHHh-------------cCCEEEEcCCCHHHHHH
Confidence 5556778888864321 12467788876665543
No 265
>KOG1969|consensus
Probab=97.02 E-value=0.0056 Score=70.55 Aligned_cols=82 Identities=22% Similarity=0.303 Sum_probs=48.5
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeee---cceeee-cC--Cceeeccc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQ---TGALVL-AD--SGVCCIDE 417 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~---~G~l~l-ad--~gI~~IDE 417 (720)
..-=+||+||||.|||+||..+|+.+.-.+. ...|+--+....-.-.++ --.-++ || .-.++|||
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVv---------EINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDE 395 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVV---------EINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDE 395 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEE---------EecccccccHHHHHHHHHHHHhhccccccCCCcceEEEec
Confidence 3446899999999999999999998763322 222221111100000000 000112 22 24678999
Q ss_pred cccCChHHHHHHHHHHH
Q psy17703 418 FDKMSDTTRSILHEVME 434 (720)
Q Consensus 418 idkm~~~~~~~L~e~mE 434 (720)
||-.++.....|+..++
T Consensus 396 IDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 396 IDGAPRAAVDVILSLVK 412 (877)
T ss_pred ccCCcHHHHHHHHHHHH
Confidence 99999887777777776
No 266
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.99 E-value=6.5e-05 Score=74.16 Aligned_cols=124 Identities=16% Similarity=0.203 Sum_probs=53.7
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCC-CccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPR-SQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr-~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
..-|++|+|+||||||.|+.++++.+-+ +..+ .-.+...+...+......+...-.-. .+.+-.+++|||+...+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v--~f~~~~~L~~~l~~~~~~~~~~~~~~--~l~~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSV--LFITASDLLDELKQSRSDGSYEELLK--RLKRVDLLILDDLGYEP 121 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--E--EEEEHHHHHHHHHCCHCCTTHCHHHH--HHHTSSCEEEETCTSS-
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcce--eEeecCceeccccccccccchhhhcC--ccccccEecccccceee
Confidence 3569999999999999999999875421 1000 00000001000000000000000000 13355789999997654
Q ss_pred --hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703 423 --DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD 487 (720)
Q Consensus 423 --~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd 487 (720)
+.....|+++++.+. ..+ .+|-|+|-....|.... .+-.+..+++||.-
T Consensus 122 ~~~~~~~~l~~ii~~R~------------~~~-~tIiTSN~~~~~l~~~~---~d~~~a~aildRl~ 172 (178)
T PF01695_consen 122 LSEWEAELLFEIIDERY------------ERK-PTIITSNLSPSELEEVL---GDRALAEAILDRLL 172 (178)
T ss_dssp --HHHHHCTHHHHHHHH------------HT--EEEEEESS-HHHHHT-------------------
T ss_pred ecccccccchhhhhHhh------------ccc-CeEeeCCCchhhHhhcc---cccccccccccccc
Confidence 455667888876542 112 34558886655443321 12245677777763
No 267
>PRK09183 transposase/IS protein; Provisional
Probab=96.99 E-value=0.0001 Score=77.26 Aligned_cols=119 Identities=19% Similarity=0.308 Sum_probs=63.4
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCC-C---ccccCCccccccccceeecCccccce--eeecceeeecCCceeecccc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPR-S---QYTSGKGSSAVGLTAYITKDPETRQM--VLQTGALVLADSGVCCIDEF 418 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr-~---~~~~g~~ss~~glta~~~~~~~~~~~--~~~~G~l~lad~gI~~IDEi 418 (720)
.-|++|+||||+|||.|+.+++..+.. + .|.+. ..+..........+.. .+.. .+....+++|||+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~-----~~l~~~l~~a~~~~~~~~~~~~---~~~~~dlLiiDdl 173 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA-----ADLLLQLSTAQRQGRYKTTLQR---GVMAPRLLIIDEI 173 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH-----HHHHHHHHHHHHCCcHHHHHHH---HhcCCCEEEEccc
Confidence 468999999999999999999765421 1 11110 0000000000000000 0000 0223468999999
Q ss_pred ccCC--hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703 419 DKMS--DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF 486 (720)
Q Consensus 419 dkm~--~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF 486 (720)
+..+ ......|+++++.+.- +-++|.|+|-..+.|..... ..-.+..+++||.
T Consensus 174 g~~~~~~~~~~~lf~li~~r~~-------------~~s~iiTsn~~~~~w~~~~~--~d~~~~~ai~dRl 228 (259)
T PRK09183 174 GYLPFSQEEANLFFQVIAKRYE-------------KGSMILTSNLPFGQWDQTFA--GDAALTSAMLDRL 228 (259)
T ss_pred ccCCCChHHHHHHHHHHHHHHh-------------cCcEEEecCCCHHHHHHHhc--CchhHHHHHHHHH
Confidence 8754 4455578888765310 12467788887777654210 1113445777776
No 268
>PF13148 DUF3987: Protein of unknown function (DUF3987)
Probab=96.98 E-value=0.0036 Score=69.13 Aligned_cols=183 Identities=20% Similarity=0.216 Sum_probs=110.6
Q ss_pred CceeeccccccC----Ch----HHHHHHHHHHHhceEeeeccCeE-Eee-cCceEEEecccCCCC-CCCCCcccccccCC
Q psy17703 410 SGVCCIDEFDKM----SD----TTRSILHEVMEQQTLSIAKAGII-CQL-NARTSILAAANPCDS-QWNTSKTIIDNIRL 478 (720)
Q Consensus 410 ~gI~~IDEidkm----~~----~~~~~L~e~mE~~~vsi~k~g~~-~~l-~a~~~iiaaaNp~~g-~~~~~~~~~~~~~l 478 (720)
+..++.||+..+ .. ..+..|+++-+.+.+++.+.+.. ..+ +.++++++++-|..- ..-. +-......
T Consensus 150 ~~l~~~dE~~~~~~~~~~~~~~~~~~~ll~~~dg~~~~~~R~~~~~~~i~~~~lsi~~~~QP~~l~~~~~--~~~~~~~~ 227 (378)
T PF13148_consen 150 GLLLFSDEGGGLLNSMGRYGGGSDRDLLLKAWDGEPYSIDRKSRGSIYIENPRLSILGGIQPDVLKREIL--SAEDPEFR 227 (378)
T ss_pred eEEEEchhHHHHHHHhhcccCCccHHHHHHHhCCCCeeeeeccCCcccCCCceEEEEeccChHHHHHHHh--hhhccccc
Confidence 346788897543 32 45678888888888888765533 333 478899998887531 1000 00001125
Q ss_pred ChhhhccceeEEEecCCChHHH----------HHHHHhhcchhHHHHHHHHHH-----hhcCCcchHHHHHHHHHHHHHh
Q psy17703 479 PHTLLSRFDLIFLLLDPQSEQF----------DARLARHLDITVLRDYIAYAQ-----EHLSPTLSEEASQRLIQTYVDM 543 (720)
Q Consensus 479 ~~aLlsRFdli~~l~d~~~~~~----------d~~la~~i~~~~l~~~i~~ar-----~~~~p~ls~ea~~~l~~~y~~l 543 (720)
..-|++||- |.+++...... +..+... .+.+...+.... ....-.++++|.+.+.++|..+
T Consensus 228 ~~Gll~RfL--~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~l~~~~~~~~~~~~~~l~ls~eA~~~~~~~~~~~ 303 (378)
T PF13148_consen 228 GDGLLARFL--FVIPDSRKGRRFEFPVPEPIDDEALEAY--HERIKELLDWPPEDGSDEPIVLELSDEAKELFREWYNEL 303 (378)
T ss_pred CCChHhhee--eeccCcccccccccCCCCcccHHHHHHH--HHHHHHHHhhhhcccCCCCeEEecCHHHHHHHHHHHHHH
Confidence 668899995 44433221110 0011100 112222222221 1122378999999999999887
Q ss_pred hhcCCC-CCCc---ccCHHHHHHHHHHHHHHHHHc-----CCCCCCHHhHHHHHHHHHHHHHHh
Q psy17703 544 RKLGAG-RGRI---SAYPRQLESLIRLSEAHAKMR-----YSETVEVQDVDEAWRLHREALKQS 598 (720)
Q Consensus 544 r~~~~~-~~~~---~~t~R~le~lirla~A~A~l~-----~~~~V~~~Dv~~Ai~l~~~~l~~~ 598 (720)
...... .++. ..-.|.-..+.|+|--++-++ ....|+.+++..|+.|.+..+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~K~~~~~~RlA~ilh~~~~~~~~~~~~I~~~~~~~Ai~l~~~~~~~~ 367 (378)
T PF13148_consen 304 ENELRQPGGDLAMRSFASKAAEQALRLALILHLFESGGSPPSTEISAETMERAIRLVEYFLEHA 367 (378)
T ss_pred HHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEECHHHHHHHHHHHHHHHHHH
Confidence 665422 2221 122366778999999999999 889999999999999998888765
No 269
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.96 E-value=0.0013 Score=66.02 Aligned_cols=97 Identities=14% Similarity=0.199 Sum_probs=68.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT 424 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~ 424 (720)
+.-++|.|+-|+|||++++.+... .|++..... ...+. ...+...-++++||++.+...
T Consensus 52 d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~------------~~kd~-----~~~l~~~~iveldEl~~~~k~ 110 (198)
T PF05272_consen 52 DTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF------------DDKDF-----LEQLQGKWIVELDELDGLSKK 110 (198)
T ss_pred ceeeeEecCCcccHHHHHHHHhHH----hccCccccC------------CCcHH-----HHHHHHhHheeHHHHhhcchh
Confidence 567889999999999999988422 332221100 00010 112334568999999999999
Q ss_pred HHHHHHHHHHhceEeeecc--CeEEeecCceEEEecccCC
Q psy17703 425 TRSILHEVMEQQTLSIAKA--GIICQLNARTSILAAANPC 462 (720)
Q Consensus 425 ~~~~L~e~mE~~~vsi~k~--g~~~~l~a~~~iiaaaNp~ 462 (720)
..+.|-..+-..+..+.+. .....+|-+++++||+|..
T Consensus 111 ~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~ 150 (198)
T PF05272_consen 111 DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDD 150 (198)
T ss_pred hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCc
Confidence 9999999998888776543 3457788899999999964
No 270
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.92 E-value=0.0012 Score=64.64 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=20.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
|++|.|+||+|||++++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 79999999999999999988876
No 271
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.87 E-value=0.0009 Score=71.90 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=62.0
Q ss_pred cceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChh
Q psy17703 402 TGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHT 481 (720)
Q Consensus 402 ~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~a 481 (720)
.|.+..|++|++=+=|+-|.+.+..-.|+.+.+++.+.. .+.....+.+..|||.+|+.. |+..+ .| .-.+|
T Consensus 226 ~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~--~~~~~~i~~D~liiAhsNe~E--~~~f~---~~-~~~eA 297 (358)
T PF08298_consen 226 SGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKV--DEDFGMIPFDELIIAHSNEEE--YNKFK---NN-KNNEA 297 (358)
T ss_pred ccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceec--CCcccccccceeEEecCCHHH--HHHHh---cc-ccchh
Confidence 478888899998777999999998889999999888766 234455788899999999764 22111 11 12379
Q ss_pred hhccceeEEEecCC
Q psy17703 482 LLSRFDLIFLLLDP 495 (720)
Q Consensus 482 LlsRFdli~~l~d~ 495 (720)
|++|+. .+.+++.
T Consensus 298 f~DRi~-~I~VPY~ 310 (358)
T PF08298_consen 298 FKDRIE-VIKVPYC 310 (358)
T ss_pred hhhheE-EEecccc
Confidence 999995 5556544
No 272
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.81 E-value=0.0021 Score=64.42 Aligned_cols=63 Identities=30% Similarity=0.513 Sum_probs=53.2
Q ss_pred hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCC
Q psy17703 654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDS 716 (720)
Q Consensus 654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~ 716 (720)
-|.+..|..|+..+||+-.+++..-.+|.+.|++..+.|+++|...+++|+.-++||+||--.
T Consensus 99 PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpC 161 (206)
T PF01078_consen 99 PGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPC 161 (206)
T ss_dssp E-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S---
T ss_pred cCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEeccccc
Confidence 467889999999999999999999999999999999999999999999999999999999753
No 273
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.78 E-value=0.00017 Score=77.96 Aligned_cols=117 Identities=18% Similarity=0.221 Sum_probs=62.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceee----cCc-cccceeeecceeeecCCceeeccccc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYIT----KDP-ETRQMVLQTGALVLADSGVCCIDEFD 419 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~----~~~-~~~~~~~~~G~l~lad~gI~~IDEid 419 (720)
.-+++|+|+||||||.|+.++++.+-+. +.+...+++.-. +.. .......+...-.+.+-.+++|||+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~------g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG 256 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR------GKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLG 256 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC------CCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccC
Confidence 4789999999999999999999866321 111222221100 000 00000000000112345789999996
Q ss_pred cC--ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703 420 KM--SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD 487 (720)
Q Consensus 420 km--~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd 487 (720)
.. ++..+..|+++++.+.- .+-.+|-|+|-....|.. .+++.+.||+-
T Consensus 257 ~e~~t~~~~~~Lf~iin~R~~------------~~k~tIiTSNl~~~el~~--------~~~eri~SRL~ 306 (329)
T PRK06835 257 TEKITEFSKSELFNLINKRLL------------RQKKMIISTNLSLEELLK--------TYSERISSRLL 306 (329)
T ss_pred CCCCCHHHHHHHHHHHHHHHH------------CCCCEEEECCCCHHHHHH--------HHhHHHHHHHH
Confidence 54 55567788888875521 123456677744332211 24566677763
No 274
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.72 E-value=0.00029 Score=72.94 Aligned_cols=111 Identities=18% Similarity=0.341 Sum_probs=61.2
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcccccccccee----ec----C-ccccceeeecceeeecCCceeecc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYI----TK----D-PETRQMVLQTGALVLADSGVCCID 416 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~----~~----~-~~~~~~~~~~G~l~lad~gI~~ID 416 (720)
-+++|+|+||||||.|+.+++..+... |. +..-+++.- .+ + ..+....++ .+..-.+++||
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~----g~--~v~~it~~~l~~~l~~~~~~~~~~~~~~l~----~l~~~dlLvID 169 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR----GK--SVLIITVADIMSAMKDTFSNSETSEEQLLN----DLSNVDLLVID 169 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc----CC--eEEEEEHHHHHHHHHHHHhhccccHHHHHH----HhccCCEEEEe
Confidence 489999999999999999999876321 11 111111100 00 0 000000111 12345689999
Q ss_pred ccccCChH--HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703 417 EFDKMSDT--TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF 486 (720)
Q Consensus 417 Eidkm~~~--~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF 486 (720)
|++..... ....|+++++.+. ..+-.++-++|-....|.. .++..++||+
T Consensus 170 Dig~~~~s~~~~~~l~~Ii~~Ry------------~~~~~tiitSNl~~~~l~~--------~~g~ri~sRl 221 (244)
T PRK07952 170 EIGVQTESRYEKVIINQIVDRRS------------SSKRPTGMLTNSNMEEMTK--------LLGERVMDRM 221 (244)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH------------hCCCCEEEeCCCCHHHHHH--------HhChHHHHHH
Confidence 99887544 3557888887542 1223456667744333221 2556677776
No 275
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=96.70 E-value=0.0073 Score=69.08 Aligned_cols=170 Identities=15% Similarity=0.167 Sum_probs=99.1
Q ss_pred eeeecceeeecCCceeeccccccCCh-HHHHHHHHHHHhceEeeeccCe----------EEeecCceEEEecccCCCCCC
Q psy17703 398 MVLQTGALVLADSGVCCIDEFDKMSD-TTRSILHEVMEQQTLSIAKAGI----------ICQLNARTSILAAANPCDSQW 466 (720)
Q Consensus 398 ~~~~~G~l~lad~gI~~IDEidkm~~-~~~~~L~e~mE~~~vsi~k~g~----------~~~l~a~~~iiaaaNp~~g~~ 466 (720)
..++||++-.|+||+++||--+-+.. .....|..++..+.+.+...+. ....|.++-||-..++..
T Consensus 321 ~~I~~GaLhkANGGyLIL~a~~LL~~p~~W~~LKr~L~~~~i~ie~~~~~~~~~~~~l~PepIpl~vKVILiG~~~~--- 397 (509)
T PF13654_consen 321 TLIKPGALHKANGGYLILDAEDLLANPYAWERLKRALRTGEIEIESPEEYGLSSTVSLEPEPIPLDVKVILIGDREL--- 397 (509)
T ss_dssp GGEE--HHHHTTTSEEEETTGGGS-HHH-HHHHHHHHHHSEE--B-S---TTSGGGG-B-S-EE---EEEEEE-TTH---
T ss_pred ceEcCceEEecCCeEEEEEHHHhhhChHHHHHHHHHHHcCceeeccccccccCCCCCCCCCCcceEEEEEEEcCHHH---
Confidence 45799999999999999999888874 5578999999999999865431 112233333333333211
Q ss_pred CCCcccccccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHH----HhhcCCcchHHHHHHHHHHHHH
Q psy17703 467 NTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYA----QEHLSPTLSEEASQRLIQTYVD 542 (720)
Q Consensus 467 ~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~a----r~~~~p~ls~ea~~~l~~~y~~ 542 (720)
...-....+.+..-|.+...+.+.-.. +.+-++.|+.+. ++.--+.++.+|...++++...
T Consensus 398 -----y~~L~~~D~dF~~lFkv~aef~~~~~~----------~~e~~~~~~~~i~~~~~~~~L~~~~~~Av~~li~~~~R 462 (509)
T PF13654_consen 398 -----YYLLYEYDPDFYKLFKVKAEFDSEMPR----------TEENIRQYARFIASICQKEGLPPFDRSAVARLIEYSAR 462 (509)
T ss_dssp -----HHHS-HHHHHHHHHHSEEEE--SEEE------------HHHHHHHHHHHHHHHHHHSS--BBHHHHHHHHHHHHH
T ss_pred -----HHHHHHhCHHHHhCCCEEEEccccCCC----------CHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 000012345566666655555432221 122333444333 3333577899999999999877
Q ss_pred hhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703 543 MRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL 590 (720)
Q Consensus 543 lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l 590 (720)
+ +.. .++.....+..+++-|...|+....+.|+.+||..|+.-
T Consensus 463 ~---~q~--kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~ 505 (509)
T PF13654_consen 463 L---DQD--KLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIEE 505 (509)
T ss_dssp C---C-S--EEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH
T ss_pred H---hCC--EeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHc
Confidence 6 221 466667899999999999999999999999999999863
No 276
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.67 E-value=0.00044 Score=63.89 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=19.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
.-+++++|+||+|||.+++.+++..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999865
No 277
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0097 Score=70.31 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=34.6
Q ss_pred cccccccccCChhhHHHHHHhhhcceEEeeecceeEEEc-ccceEEeecC
Q psy17703 664 VCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLN-ARTSILAAAN 712 (720)
Q Consensus 664 ~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~-~~~~~~~~~~ 712 (720)
+.-+||++|-.++.-..++++|.+..+.=++| ++++ -+|.||.+.|
T Consensus 596 ViLlDEIEKAHpdV~nilLQVlDdGrLTD~~G---r~VdFrNtiIImTSN 642 (786)
T COG0542 596 VILLDEIEKAHPDVFNLLLQVLDDGRLTDGQG---RTVDFRNTIIIMTSN 642 (786)
T ss_pred EEEechhhhcCHHHHHHHHHHhcCCeeecCCC---CEEecceeEEEEecc
Confidence 34789999999999999999999999887776 2333 2455555555
No 278
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.66 E-value=0.0047 Score=65.22 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
-++||+||+|.|||++++...+.-|.
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~ 87 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPP 87 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCC
Confidence 58999999999999999999887664
No 279
>PHA02774 E1; Provisional
Probab=96.64 E-value=0.0047 Score=70.43 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=61.0
Q ss_pred CCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 342 TPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 342 ~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
.|..-+++|+||||||||.|+-++++.+...+...... ...+.+. .+++..++++||+..-
T Consensus 431 ~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~---------------~s~FwLq----pl~d~ki~vlDD~t~~ 491 (613)
T PHA02774 431 IPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS---------------KSHFWLQ----PLADAKIALLDDATHP 491 (613)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC---------------ccccccc----hhccCCEEEEecCcch
Confidence 34556899999999999999999998874221110000 0122222 2557789999999322
Q ss_pred C-hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCC
Q psy17703 422 S-DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463 (720)
Q Consensus 422 ~-~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~ 463 (720)
- .-....|+.+++.+.+++.+....-.--...-+|-|+|...
T Consensus 492 ~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~ 534 (613)
T PHA02774 492 CWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDV 534 (613)
T ss_pred HHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCc
Confidence 1 22244688888888888754332111111233666788443
No 280
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.55 E-value=0.00056 Score=71.41 Aligned_cols=107 Identities=18% Similarity=0.265 Sum_probs=58.2
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcccccccccee--ecCccccceeeecceee-ecCCceeecccccc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYI--TKDPETRQMVLQTGALV-LADSGVCCIDEFDK 420 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~--~~~~~~~~~~~~~G~l~-lad~gI~~IDEidk 420 (720)
..-+++|+|+||||||.|+-+++..+-+. |.....+...-.+ ++... ..-..+.-..- +..--+++|||+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~----g~sv~f~~~~el~~~Lk~~~-~~~~~~~~l~~~l~~~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA----GISVLFITAPDLLSKLKAAF-DEGRLEEKLLRELKKVDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEEHHHHHHHHHHHH-hcCchHHHHHHHhhcCCEEEEecccC
Confidence 35699999999999999999998855321 1111111000000 00000 00000000011 34457899999988
Q ss_pred CC--hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCC
Q psy17703 421 MS--DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT 468 (720)
Q Consensus 421 m~--~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~ 468 (720)
.+ ...++.+++++.+..-+ +.. +.++|-..+.|..
T Consensus 179 ~~~~~~~~~~~~q~I~~r~~~------------~~~-~~tsN~~~~~~~~ 215 (254)
T COG1484 179 EPFSQEEADLLFQLISRRYES------------RSL-IITSNLSFGEWDE 215 (254)
T ss_pred ccCCHHHHHHHHHHHHHHHhh------------ccc-eeecCCChHHHHh
Confidence 54 44577788877654322 222 6778877766654
No 281
>PHA02624 large T antigen; Provisional
Probab=96.52 E-value=0.0027 Score=72.59 Aligned_cols=120 Identities=15% Similarity=0.210 Sum_probs=72.9
Q ss_pred CCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 342 TPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 342 ~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
.|+.--+||+||||||||+++.++.+.+...+.. .+. ......+.+ | +++|.-++++|++..-
T Consensus 428 iPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vls-VNs------------Pt~ks~FwL--~--pl~D~~~~l~dD~t~~ 490 (647)
T PHA02624 428 VPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLN-VNC------------PPDKLNFEL--G--CAIDQFMVVFEDVKGQ 490 (647)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEE-eeC------------CcchhHHHh--h--hhhhceEEEeeecccc
Confidence 3566789999999999999999999988422111 000 000011222 2 2557777788877322
Q ss_pred Ch-----------HHHHHHHHHHHhc-eEeeeccC---eEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703 422 SD-----------TTRSILHEVMEQQ-TLSIAKAG---IICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF 486 (720)
Q Consensus 422 ~~-----------~~~~~L~e~mE~~-~vsi~k~g---~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF 486 (720)
.- +...-|+.+|+-. .|++.+.. .....|. .|-|+|.. -||.++.-||
T Consensus 491 ~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PP---lliT~Ney--------------~iP~T~~~Rf 553 (647)
T PHA02624 491 PADNKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPP---GIVTMNEY--------------LIPQTVKARF 553 (647)
T ss_pred ccccccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCC---eEEeecCc--------------ccchhHHHHH
Confidence 11 1235678888766 67765432 2223333 45677743 4999999999
Q ss_pred eeEEEecCC
Q psy17703 487 DLIFLLLDP 495 (720)
Q Consensus 487 dli~~l~d~ 495 (720)
-.++.+...
T Consensus 554 ~~~~~F~~k 562 (647)
T PHA02624 554 AKVLDFKPK 562 (647)
T ss_pred HHhcccccc
Confidence 877776644
No 282
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.46 E-value=0.0039 Score=65.93 Aligned_cols=118 Identities=21% Similarity=0.184 Sum_probs=68.2
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cC-Cccccccccceee-cCcc--------c----cceeeecceeeecCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SG-KGSSAVGLTAYIT-KDPE--------T----RQMVLQTGALVLADS 410 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g-~~ss~~glta~~~-~~~~--------~----~~~~~~~G~l~lad~ 410 (720)
+-.||+||+|+||..+|..+++.+-..... .. .-....+-....+ .+.. . ....+.| ..+..
T Consensus 20 HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p---~e~~~ 96 (290)
T PRK05917 20 SAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHP---YESPY 96 (290)
T ss_pred eeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCc---cCCCc
Confidence 467799999999999999999866321100 00 0000000000000 0000 0 0011111 12335
Q ss_pred ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCc-eEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNAR-TSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~-~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
.|++||+.|+|+.+.+++|+..||+-. .+ ..++.|.||. .++|+++||+- .
T Consensus 97 kv~ii~~ad~mt~~AaNaLLK~LEEPp-------------~~~~fiL~~~~~~--------------~ll~TI~SRcq-~ 148 (290)
T PRK05917 97 KIYIIHEADRMTLDAISAFLKVLEDPP-------------QHGVIILTSAKPQ--------------RLPPTIRSRSL-S 148 (290)
T ss_pred eEEEEechhhcCHHHHHHHHHHhhcCC-------------CCeEEEEEeCChh--------------hCcHHHHhcce-E
Confidence 699999999999999999999999632 22 3355555544 48999999996 4
Q ss_pred EEecC
Q psy17703 490 FLLLD 494 (720)
Q Consensus 490 ~~l~d 494 (720)
+.+.+
T Consensus 149 ~~~~~ 153 (290)
T PRK05917 149 IHIPM 153 (290)
T ss_pred EEccc
Confidence 44543
No 283
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.28 E-value=0.086 Score=65.09 Aligned_cols=144 Identities=17% Similarity=0.176 Sum_probs=84.8
Q ss_pred CceeeccccccCCh-------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhh
Q psy17703 410 SGVCCIDEFDKMSD-------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTL 482 (720)
Q Consensus 410 ~gI~~IDEidkm~~-------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aL 482 (720)
.+|+|.|||+ |+. ++.-.|+..||.|-+.-.-+..+.++ .+..+.+|+||.-.. ..+.++..+
T Consensus 1564 ~lVLFcDeIn-Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI-~~i~l~Gacnp~td~--------gRv~~~eRf 1633 (3164)
T COG5245 1564 DLVLFCDEIN-LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTI-CGIILYGACNPGTDE--------GRVKYYERF 1633 (3164)
T ss_pred heEEEeeccC-CccccccCCCceEEeeHHHHHhcccccchhhhHhhh-cceEEEccCCCCCCc--------ccCccHHHH
Confidence 5799999998 553 34446778888764432222222332 467899999996421 123577777
Q ss_pred hccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcC---CcchHHHHHHHHHHHHHhhhcCCC--CCCcccCH
Q psy17703 483 LSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLS---PTLSEEASQRLIQTYVDMRKLGAG--RGRISAYP 557 (720)
Q Consensus 483 lsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~---p~ls~ea~~~l~~~y~~lr~~~~~--~~~~~~t~ 557 (720)
++|=-++|.- +|.......... .-+. +--.+. -+++++.+.+-+..|...|..... .+++..+|
T Consensus 1634 ~r~~v~vf~~-ype~~SL~~Iye----a~l~------~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~p 1702 (3164)
T COG5245 1634 IRKPVFVFCC-YPELASLRNIYE----AVLM------GSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKP 1702 (3164)
T ss_pred hcCceEEEec-CcchhhHHHHHH----HHHH------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCh
Confidence 7776544444 554333222211 0001 111122 356788888888889888775432 34567789
Q ss_pred HHHHHHHHHHHHHHHHc
Q psy17703 558 RQLESLIRLSEAHAKMR 574 (720)
Q Consensus 558 R~le~lirla~A~A~l~ 574 (720)
|.|-+++|.-...|.-+
T Consensus 1703 ReLtR~lr~i~~yaeT~ 1719 (3164)
T COG5245 1703 RELTRSLRAIFGYAETR 1719 (3164)
T ss_pred HHHHHHHHHHHhHHhcC
Confidence 99999888666655443
No 284
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.26 E-value=0.0056 Score=72.35 Aligned_cols=65 Identities=22% Similarity=0.352 Sum_probs=60.9
Q ss_pred hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCCC
Q psy17703 654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQW 718 (720)
Q Consensus 654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~~ 718 (720)
.|.+..++.|+.++||+..|+......|+++|+++.+.+.+.|...++++++.|+|+.||..|.+
T Consensus 119 ~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l 183 (633)
T TIGR02442 119 PGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDL 183 (633)
T ss_pred CcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCC
Confidence 56677889999999999999999999999999999999999999999999999999999988765
No 285
>KOG2545|consensus
Probab=96.23 E-value=0.16 Score=55.07 Aligned_cols=199 Identities=22% Similarity=0.249 Sum_probs=125.9
Q ss_pred HHHHHHHHhhCCCCccccCCccccccc-cceeecCccccceeeecceeeecCCceeeccccc-------cCChHHHHHHH
Q psy17703 359 SQLLSYVYDLVPRSQYTSGKGSSAVGL-TAYITKDPETRQMVLQTGALVLADSGVCCIDEFD-------KMSDTTRSILH 430 (720)
Q Consensus 359 S~ll~~va~~~pr~~~~~g~~ss~~gl-ta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEid-------km~~~~~~~L~ 430 (720)
|+|-+.+-.++|+.++...+- ..+ ++.+......+...+-+|.+-+|++--+.|||-. ...-..-++|-
T Consensus 325 tqLy~iL~~Llpas~~~pmti---e~lNta~f~PkkDyetNrLvsgvLQlapgThLVLDETeLqqGtLn~vGvhnvq~Ls 401 (543)
T KOG2545|consen 325 TQLYSILRPLLPASVIQPMTI---EELNTAPFYPKKDYETNRLVSGVLQLAPGTHLVLDETELQQGTLNDVGVHNVQFLS 401 (543)
T ss_pred HHHHHHHHHhchhhheeeeeH---HhhcccCccccccccccccccceeecCCCceEEeehhhcCCCccCccchhhHHHHH
Confidence 556666666777765543221 111 1222222233344577899999999999999952 22223456788
Q ss_pred HHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eE--EEecCCChHHHHHHHHh
Q psy17703 431 EVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LI--FLLLDPQSEQFDARLAR 506 (720)
Q Consensus 431 e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li--~~l~d~~~~~~d~~la~ 506 (720)
..+++|.+..--.--....++++.++-.+. |+. .||..+-=|.+ .+ ..+.-|+
T Consensus 402 nLI~~Qkl~ydfqyyqme~~~nv~vlIlSe---Grs----------ilPADl~i~lqp~~v~~le~~tps---------- 458 (543)
T KOG2545|consen 402 NLISQQKLTYDFQYYQMEVHSNVRVLILSE---GRS----------ILPADLGIRLQPDSVDTLEFPTPS---------- 458 (543)
T ss_pred HHhhccccceecceEEEEeccCceEEEeeC---Ccc----------cCcccccccCCCCCCCccccCChh----------
Confidence 888998877633333445566665555442 210 13332111111 00 1111121
Q ss_pred hcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHH
Q psy17703 507 HLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDE 586 (720)
Q Consensus 507 ~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~ 586 (720)
+....|.|+..+|. ..-.+++|..+.+.+-|++||+..... ..-.|..++-+|+-.++..++..+..+|-..
T Consensus 459 --~l~q~rcyltt~r~-l~~nIsee~t~~iq~dfV~mRq~n~~s-----naddLs~lLv~sRlls~S~G~ttlsre~wq~ 530 (543)
T KOG2545|consen 459 --DLLQFRCYLTTMRN-LRANISEEMTDYIQSDFVSMRQYNKES-----NADDLSLLLVCSRLLSKSFGRTTLSREDWQA 530 (543)
T ss_pred --HHHHHHHHHHHHHh-hccCccHHHHHHHHHHHHHHHhhCccc-----chhHHHHHHHHHHHHHHhhccchhhHHHHHH
Confidence 23356888888885 688899999999999999999965432 2367888999999999999999999999999
Q ss_pred HHHHH
Q psy17703 587 AWRLH 591 (720)
Q Consensus 587 Ai~l~ 591 (720)
|.+|-
T Consensus 531 a~ele 535 (543)
T KOG2545|consen 531 ARELE 535 (543)
T ss_pred HHHHH
Confidence 98873
No 286
>KOG0735|consensus
Probab=96.19 E-value=0.051 Score=62.75 Aligned_cols=137 Identities=19% Similarity=0.277 Sum_probs=70.3
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCcc-----ccCCccccccccceeecCccccceeeecceeeecCCceeecccc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQY-----TSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEF 418 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-----~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEi 418 (720)
..-||||.|++|+|||.|++++++......+ .++.....-.+. . .+. .-..+..++ + .-...|+++|++
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e-~-iQk-~l~~vfse~--~-~~~PSiIvLDdl 503 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE-K-IQK-FLNNVFSEA--L-WYAPSIIVLDDL 503 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH-H-HHH-HHHHHHHHH--H-hhCCcEEEEcch
Confidence 4569999999999999999999987643221 222111110000 0 000 000010000 0 012467888888
Q ss_pred ccCChH---------H-HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703 419 DKMSDT---------T-RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF 486 (720)
Q Consensus 419 dkm~~~---------~-~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF 486 (720)
|.+-.. . -+.|..++.|-.. +..+.+....+||+.+... .|++-|.| +|
T Consensus 504 d~l~~~s~~e~~q~~~~~~rla~flnqvi~------~y~~~~~~ia~Iat~qe~q-------------tl~~~L~s~~~F 564 (952)
T KOG0735|consen 504 DCLASASSNENGQDGVVSERLAAFLNQVIK------IYLKRNRKIAVIATGQELQ-------------TLNPLLVSPLLF 564 (952)
T ss_pred hhhhccCcccCCcchHHHHHHHHHHHHHHH------HHHccCcEEEEEEechhhh-------------hcChhhcCccce
Confidence 776430 1 1122222222111 1233455678999887432 23333333 89
Q ss_pred eeEEEecCCChHHHHHHHH
Q psy17703 487 DLIFLLLDPQSEQFDARLA 505 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la 505 (720)
+.++.+..|...++.+.|.
T Consensus 565 q~~~~L~ap~~~~R~~IL~ 583 (952)
T KOG0735|consen 565 QIVIALPAPAVTRRKEILT 583 (952)
T ss_pred EEEEecCCcchhHHHHHHH
Confidence 9888888887665544443
No 287
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.16 E-value=0.022 Score=60.93 Aligned_cols=130 Identities=16% Similarity=0.223 Sum_probs=75.2
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCc---cccCCcccccc-cc--ceeecCcccc----ceeeecceeeecCCceeecc
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQ---YTSGKGSSAVG-LT--AYITKDPETR----QMVLQTGALVLADSGVCCID 416 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~---~~~g~~ss~~g-lt--a~~~~~~~~~----~~~~~~G~l~lad~gI~~ID 416 (720)
-.||+|+.|.||+++++++++.+-... ...+....... .. .....-.... ...+.| +..++..|++||
T Consensus 20 aYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~--~~~~~~KvvII~ 97 (299)
T PRK07132 20 SFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSS--FVQSQKKILIIK 97 (299)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCC--cccCCceEEEEe
Confidence 345999999999999999998762110 00000000000 00 0000000000 011111 111256799999
Q ss_pred ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEe-cccCCCCCCCCCcccccccCCChhhhccceeEEEecCC
Q psy17703 417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILA-AANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDP 495 (720)
Q Consensus 417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iia-aaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~ 495 (720)
+.++|+....++|+..||+- |..+.+|- +.||. .+.+++.||+- ++.+.++
T Consensus 98 ~~e~m~~~a~NaLLK~LEEP-------------p~~t~~il~~~~~~--------------kll~TI~SRc~-~~~f~~l 149 (299)
T PRK07132 98 NIEKTSNSLLNALLKTIEEP-------------PKDTYFLLTTKNIN--------------KVLPTIVSRCQ-VFNVKEP 149 (299)
T ss_pred cccccCHHHHHHHHHHhhCC-------------CCCeEEEEEeCChH--------------hChHHHHhCeE-EEECCCC
Confidence 99999999999999999863 33344443 44542 48899999996 6788877
Q ss_pred ChHHHHHHHHh
Q psy17703 496 QSEQFDARLAR 506 (720)
Q Consensus 496 ~~~~~d~~la~ 506 (720)
+.++....+..
T Consensus 150 ~~~~l~~~l~~ 160 (299)
T PRK07132 150 DQQKILAKLLS 160 (299)
T ss_pred CHHHHHHHHHH
Confidence 77766555543
No 288
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.15 E-value=0.012 Score=56.33 Aligned_cols=25 Identities=24% Similarity=0.562 Sum_probs=22.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
.+.|++.|+||+|||+++..+++.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 5789999999999999999999766
No 289
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.13 E-value=0.002 Score=70.61 Aligned_cols=27 Identities=30% Similarity=0.531 Sum_probs=24.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
.-.+.|+|++|+|||+|+-.....+|.
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCCc
Confidence 357999999999999999999998874
No 290
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.11 E-value=0.021 Score=59.34 Aligned_cols=122 Identities=16% Similarity=0.185 Sum_probs=67.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCc--cccCCccc------cccccceeecCcc-------cccee--eecceeeec
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQ--YTSGKGSS------AVGLTAYITKDPE-------TRQMV--LQTGALVLA 408 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~--~~~g~~ss------~~glta~~~~~~~-------~~~~~--~~~G~l~la 408 (720)
+-.||+|++|+||..+|.++++.+-... -.+|.=.+ ..+-....+.+.. .++.. +..-.+..+
T Consensus 8 HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~~ 87 (261)
T PRK05818 8 HPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVESN 87 (261)
T ss_pred cceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhcC
Confidence 5689999999999999999998653211 00111000 0000000100000 00000 000010112
Q ss_pred CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceE-EEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703 409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTS-ILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD 487 (720)
Q Consensus 409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~-iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd 487 (720)
...|++|+++++|+....++|+..+|+- |.++. ++.|.||. +++++++||+-
T Consensus 88 ~~KV~II~~ae~m~~~AaNaLLK~LEEP-------------p~~t~fiLit~~~~--------------~lLpTI~SRCq 140 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQSANSLLKLIEEP-------------PKNTYGIFTTRNEN--------------NILNTILSRCV 140 (261)
T ss_pred CCEEEEeccHhhhCHHHHHHHHHhhcCC-------------CCCeEEEEEECChH--------------hCchHhhhhee
Confidence 3469999999999999999999999863 22333 44444443 58999999985
Q ss_pred eEEEecCC
Q psy17703 488 LIFLLLDP 495 (720)
Q Consensus 488 li~~l~d~ 495 (720)
.+.+..+
T Consensus 141 -~~~~~~~ 147 (261)
T PRK05818 141 -QYVVLSK 147 (261)
T ss_pred -eeecCCh
Confidence 4445433
No 291
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.01 E-value=0.0089 Score=65.06 Aligned_cols=65 Identities=23% Similarity=0.371 Sum_probs=60.9
Q ss_pred hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCCC
Q psy17703 654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQW 718 (720)
Q Consensus 654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~~ 718 (720)
.|.+..++.|+.++||+..++++....++++|+++.+++.+.|...+++++..++|+.||..|.+
T Consensus 137 ~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l 201 (350)
T CHL00081 137 PGLLAKANRGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGEL 201 (350)
T ss_pred CCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCC
Confidence 56677889999999999999999999999999999999999999999999999999999998865
No 292
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.01 E-value=0.0094 Score=64.63 Aligned_cols=65 Identities=23% Similarity=0.379 Sum_probs=60.2
Q ss_pred hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCCC
Q psy17703 654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQW 718 (720)
Q Consensus 654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~~ 718 (720)
.|.+..+++|+.++||++.++++...++.++|++..+.+...|...+++++..++|+.||..|.+
T Consensus 121 ~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l 185 (334)
T PRK13407 121 PGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGEL 185 (334)
T ss_pred CCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCC
Confidence 56677788899999999999999999999999999999999999999999999999999987653
No 293
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.93 E-value=0.01 Score=64.39 Aligned_cols=65 Identities=25% Similarity=0.378 Sum_probs=60.1
Q ss_pred hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCCC
Q psy17703 654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQW 718 (720)
Q Consensus 654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~~ 718 (720)
.|.+..+++|+.++||+..|+++....|+++|+++.+.+...|...+++++..++|+.||..|.+
T Consensus 124 ~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l 188 (337)
T TIGR02030 124 PGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGEL 188 (337)
T ss_pred cCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCC
Confidence 46677788999999999999999999999999999999999999999999999999999998754
No 294
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=95.77 E-value=0.012 Score=68.81 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=58.2
Q ss_pred hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCC
Q psy17703 654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 715 (720)
Q Consensus 654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~ 715 (720)
.|.+..+++|+.++||+..++++....|+++|+++.+++.+.|...++++++.|||+.||..
T Consensus 77 ~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e 138 (589)
T TIGR02031 77 PGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE 138 (589)
T ss_pred CCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc
Confidence 45567788899999999999999999999999999999999999999999999999999986
No 295
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=95.62 E-value=0.037 Score=60.12 Aligned_cols=120 Identities=19% Similarity=0.187 Sum_probs=68.3
Q ss_pred cCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703 341 ETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK 420 (720)
Q Consensus 341 E~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk 420 (720)
..|..-=++|+|||+||||++.-.+.+.+...+..-....| .+-+.| |++..|.+||+...
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns~S---------------hFWLqP----L~d~Ki~llDDAT~ 318 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---------------HFWLQP----LADAKIALLDDATY 318 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGTTS---------------CGGGGG----GCT-SSEEEEEE-H
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEecCCCC---------------cccccc----hhcCcEEEEcCCcc
Confidence 35666789999999999999999988877533332222222 233343 67888999999854
Q ss_pred CChHHH-HHHHHHHHhceEeeec---cCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEec
Q psy17703 421 MSDTTR-SILHEVMEQQTLSIAK---AGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLL 493 (720)
Q Consensus 421 m~~~~~-~~L~e~mE~~~vsi~k---~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~ 493 (720)
--=+.. ..|+.+|+...+++.. +-.....|. ++-|+|-....-+. -.-|.||.- .|.+.
T Consensus 319 ~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PP---LlITsN~dv~~~~~----------~~YLhSRi~-~f~F~ 381 (432)
T PF00519_consen 319 PCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPP---LLITSNIDVKKDDR----------WKYLHSRIT-CFEFP 381 (432)
T ss_dssp HHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE------EEEEESS-TTTSCC----------CHHHCTTEE-EEE--
T ss_pred cHHHHHHHHHHhccCCCeeeeeccCCCceEeecCc---eEEecCCCCCcchh----------hhhhhheEE-EEEcC
Confidence 332222 3477888888898852 333334443 45667744322111 145677775 45544
No 296
>PF13173 AAA_14: AAA domain
Probab=95.47 E-value=0.013 Score=54.31 Aligned_cols=81 Identities=21% Similarity=0.269 Sum_probs=44.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC---CCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP---RSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p---r~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
--++|.|+.|+|||++++.+++... +..|.+........+. +...-+...+. ......++||||++.++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA-----DPDLLEYFLEL---IKPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh-----hhhhHHHHHHh---hccCCcEEEEehhhhhc
Confidence 3589999999999999998887543 2233322211111100 00000011110 01146789999999998
Q ss_pred hHHHHHHHHHHHh
Q psy17703 423 DTTRSILHEVMEQ 435 (720)
Q Consensus 423 ~~~~~~L~e~mE~ 435 (720)
. ....+....+.
T Consensus 75 ~-~~~~lk~l~d~ 86 (128)
T PF13173_consen 75 D-WEDALKFLVDN 86 (128)
T ss_pred c-HHHHHHHHHHh
Confidence 5 44556555553
No 297
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=95.44 E-value=0.048 Score=48.10 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=34.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703 554 SAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL 590 (720)
Q Consensus 554 ~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l 590 (720)
.+|.|....++|+|+++|+|.+++.|+.+|+.+|+.+
T Consensus 59 ~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~y 95 (96)
T PF13335_consen 59 NLSARGYHRILRVARTIADLEGSERITREHIAEALSY 95 (96)
T ss_pred CcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHhC
Confidence 3567999999999999999999999999999999763
No 298
>PRK04296 thymidine kinase; Provisional
Probab=95.42 E-value=0.063 Score=53.53 Aligned_cols=22 Identities=18% Similarity=-0.005 Sum_probs=17.4
Q ss_pred EEEEcCCCCHHHHHHHHHHhhC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~ 369 (720)
++++||||+|||+++..++..+
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHH
Confidence 5789999999998876665543
No 299
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=95.42 E-value=0.13 Score=55.15 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=71.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT 424 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~ 424 (720)
..=++|+|+.|+|||++++.+..+++....+ .. +...+.. . ....+ +.-.+...-+++.||+..-...
T Consensus 76 ~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~-~~--~~~~~~~-~----~~~~f----~~a~l~gk~l~~~~E~~~~~~~ 143 (304)
T TIGR01613 76 QKLFFLYGNGGNGKSTFQNLLSNLLGDYATT-AV--ASLKMNE-F----QEHRF----GLARLEGKRAVIGDEVQKGYRD 143 (304)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHhChhhcc-CC--cchhhhh-c----cCCCc----hhhhhcCCEEEEecCCCCCccc
Confidence 3458899999999999999998888642210 00 0000100 0 00011 1112344567888998653333
Q ss_pred HHHHHHHHHHhceEeeeccCe-EEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEe
Q psy17703 425 TRSILHEVMEQQTLSIAKAGI-ICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLL 492 (720)
Q Consensus 425 ~~~~L~e~mE~~~vsi~k~g~-~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l 492 (720)
..+.|..+.....+++.+.+. .......+.++.++|..+.-. .-+.++.+|+- ++.+
T Consensus 144 ~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~----------~~~~a~~RR~~-vi~f 201 (304)
T TIGR01613 144 DESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIR----------GFDGGIKRRLR-IIPF 201 (304)
T ss_pred cHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccC----------CCChhheeeEE-EEec
Confidence 345566666666777764443 344455678899999655221 23568889994 4444
No 300
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.42 E-value=0.012 Score=55.19 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=21.0
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~p 370 (720)
|+++|+||+|||++++.+++.++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999997765
No 301
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.39 E-value=0.026 Score=64.82 Aligned_cols=91 Identities=13% Similarity=0.159 Sum_probs=49.8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccc-------c---ccccc----eeecCccccceeeec---------
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSS-------A---VGLTA----YITKDPETRQMVLQT--------- 402 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss-------~---~glta----~~~~~~~~~~~~~~~--------- 402 (720)
.-+||.||||+|||++++.+++.+...+........ . .+... ...+-....++.++.
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~ 125 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMS 125 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 368889999999999999999987443322111111 0 00000 000101112221221
Q ss_pred ceeeecCCceeeccccccCChHHHHHHHHHHHhc
Q psy17703 403 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQ 436 (720)
Q Consensus 403 G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~ 436 (720)
|.-.....-|++|+|+..+.......++++|++-
T Consensus 126 g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~ 159 (519)
T PF03215_consen 126 GSNSSSNKKVILVEDLPNVFHRDTSRFREALRQY 159 (519)
T ss_pred CCCcCCCceEEEeeccccccchhHHHHHHHHHHH
Confidence 1111234568999999876655557888887654
No 302
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.36 E-value=0.012 Score=53.64 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.5
Q ss_pred EEEEcCCCCHHHHHHHHHHhhC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~ 369 (720)
|++.|+||+|||++++.+++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999865
No 303
>PRK04040 adenylate kinase; Provisional
Probab=95.29 E-value=0.075 Score=52.94 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=22.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.|+++|.||+|||++++.+++.++
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999998875
No 304
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.26 E-value=0.035 Score=56.75 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=18.8
Q ss_pred EEEEcCCCCHHHHHHHHHHhh
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~ 368 (720)
+++.|.||+|||++++.+...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999998876
No 305
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.19 E-value=0.14 Score=54.34 Aligned_cols=58 Identities=24% Similarity=0.301 Sum_probs=42.9
Q ss_pred CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCce-EEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703 409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNART-SILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD 487 (720)
Q Consensus 409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~-~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd 487 (720)
...|++||++|+|+....++|+..+|+- |.++ .|+.|.||. .+.|++.||+-
T Consensus 104 ~~kV~II~~ad~m~~~AaNaLLKtLEEP-------------p~~t~~iL~t~~~~--------------~lLpTI~SRcq 156 (290)
T PRK07276 104 KQQVFIIKDADKMHVNAANSLLKVIEEP-------------QSEIYIFLLTNDEN--------------KVLPTIKSRTQ 156 (290)
T ss_pred CcEEEEeehhhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh--------------hCchHHHHcce
Confidence 4569999999999999999999999863 2223 344454543 48899999996
Q ss_pred eEEEecC
Q psy17703 488 LIFLLLD 494 (720)
Q Consensus 488 li~~l~d 494 (720)
++.+..
T Consensus 157 -~i~f~~ 162 (290)
T PRK07276 157 -IFHFPK 162 (290)
T ss_pred -eeeCCC
Confidence 455544
No 306
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.12 E-value=0.01 Score=65.11 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
-+++.|.||||||.||-.+++.+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 37899999999999999988876
No 307
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.06 E-value=0.1 Score=53.59 Aligned_cols=199 Identities=19% Similarity=0.184 Sum_probs=111.7
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCcc----ccCCccccccccceeecCccc-cceeee-------cceeee----
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQY----TSGKGSSAVGLTAYITKDPET-RQMVLQ-------TGALVL---- 407 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~----~~g~~ss~~glta~~~~~~~~-~~~~~~-------~G~l~l---- 407 (720)
+..-+.++|+-|+|||.+.|++...++.... ......+..++.....-+-.. ..|... .+...+
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g 129 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKG 129 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhC
Confidence 4456889999999999999977776654322 111122222222111111000 011110 000001
Q ss_pred cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCC--Chhhhcc
Q psy17703 408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRL--PHTLLSR 485 (720)
Q Consensus 408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l--~~aLlsR 485 (720)
..+-++++||...+..+..++|.-.++--.-+ ....+++-..-|.-.. ..++ -..+-.|
T Consensus 130 ~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~----------~~~l~ivL~Gqp~L~~---------~lr~~~l~e~~~R 190 (269)
T COG3267 130 KRPVVLMVDEAHDLNDSALEALRLLTNLEEDS----------SKLLSIVLIGQPKLRP---------RLRLPVLRELEQR 190 (269)
T ss_pred CCCeEEeehhHhhhChhHHHHHHHHHhhcccc----------cCceeeeecCCcccch---------hhchHHHHhhhhe
Confidence 01236899999999999988888776532111 1124444444444311 0011 1345569
Q ss_pred ceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703 486 FDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR 565 (720)
Q Consensus 486 Fdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir 565 (720)
+++.|.+.+..+++... .++-.+..| ..-.|.+++++...+... .. ..||....+..
T Consensus 191 ~~ir~~l~P~~~~~t~~---------yl~~~Le~a-~~~~~l~~~~a~~~i~~~-----sq--------g~P~lin~~~~ 247 (269)
T COG3267 191 IDIRIELPPLTEAETGL---------YLRHRLEGA-GLPEPLFSDDALLLIHEA-----SQ--------GIPRLINNLAT 247 (269)
T ss_pred EEEEEecCCcChHHHHH---------HHHHHHhcc-CCCcccCChhHHHHHHHH-----hc--------cchHHHHHHHH
Confidence 99888887776554322 233334444 234678888888877632 11 25799999999
Q ss_pred HHHHHHHHcCCCCCCHHhH
Q psy17703 566 LSEAHAKMRYSETVEVQDV 584 (720)
Q Consensus 566 la~A~A~l~~~~~V~~~Dv 584 (720)
+|.-.|...+.+.|+...+
T Consensus 248 ~Al~~a~~a~~~~v~~a~~ 266 (269)
T COG3267 248 LALDAAYSAGEDGVSEAEI 266 (269)
T ss_pred HHHHHHHHcCCCccchhhc
Confidence 9999888888888776544
No 308
>KOG3347|consensus
Probab=94.88 E-value=0.018 Score=54.24 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=23.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.-|||+.|-||||||++++.+|+.+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~ 32 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG 32 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC
Confidence 46999999999999999999997654
No 309
>PHA00729 NTP-binding motif containing protein
Probab=94.83 E-value=0.019 Score=58.57 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=23.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
+-.+++|+|+||||||+|+..+++.+
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999999865
No 310
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.78 E-value=0.017 Score=57.94 Aligned_cols=92 Identities=18% Similarity=0.152 Sum_probs=44.8
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCC---Cc-cccCCccccc------cccceeecCcccc-ceeeecceeeecCCce
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPR---SQ-YTSGKGSSAV------GLTAYITKDPETR-QMVLQTGALVLADSGV 412 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr---~~-~~~g~~ss~~------glta~~~~~~~~~-~~~~~~G~l~lad~gI 412 (720)
++--.++.|+||||||++++.+.+.+.. .+ .....+.... +..+..+...... ......+...+....+
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~v 96 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDV 96 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSE
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccE
Confidence 3445778899999999999988775521 11 1111100000 0000000000000 0000001111344569
Q ss_pred eeccccccCChHHHHHHHHHHHh
Q psy17703 413 CCIDEFDKMSDTTRSILHEVMEQ 435 (720)
Q Consensus 413 ~~IDEidkm~~~~~~~L~e~mE~ 435 (720)
++|||...++......|++..+.
T Consensus 97 liVDEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 97 LIVDEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp EEESSGGG-BHHHHHHHHHHS-T
T ss_pred EEEecccccCHHHHHHHHHHHHh
Confidence 99999999999887777776543
No 311
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=94.73 E-value=0.043 Score=63.28 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=23.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+-++|+.|++|+|||+|+|+++.+=|
T Consensus 419 G~~llI~G~SG~GKTsLlRaiaGLWP 444 (604)
T COG4178 419 GERLLITGESGAGKTSLLRALAGLWP 444 (604)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCc
Confidence 45899999999999999999999765
No 312
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=94.71 E-value=0.034 Score=41.06 Aligned_cols=30 Identities=23% Similarity=0.582 Sum_probs=26.0
Q ss_pred eeecccCCceeeeeeccCcccCCccCCCCCC
Q psy17703 288 FFRCIVCNYSTTVEIDRGRIHEPTLCTNCST 318 (720)
Q Consensus 288 ~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~ 318 (720)
.|+|.+||+...+...... ..+..||.|+.
T Consensus 5 ey~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 5 EYRCEECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred EEEeCCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 5999999999988876656 78899999997
No 313
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.66 E-value=0.023 Score=57.36 Aligned_cols=27 Identities=30% Similarity=0.462 Sum_probs=25.2
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+..|.|+.||||+|||+++|-+++++.
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhh
Confidence 788999999999999999999999774
No 314
>PRK14532 adenylate kinase; Provisional
Probab=94.64 E-value=0.027 Score=55.75 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=22.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+|+|+|+||+|||++++.+++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 699999999999999999998765
No 315
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.56 E-value=0.026 Score=51.52 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEcCCCCHHHHHHHHHHhhC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~ 369 (720)
|+|.|.||+|||++++++++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999876
No 316
>KOG2170|consensus
Probab=94.49 E-value=0.013 Score=61.28 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=55.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccc---eee-----ecceeeecCCceeecc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQ---MVL-----QTGALVLADSGVCCID 416 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~---~~~-----~~G~l~lad~gI~~ID 416 (720)
..-+=|.|.|||||+..++.+++.+ |..|..|..+....+...-|.... +.. -.|.+..-+..+.++|
T Consensus 110 PLvLSfHG~tGTGKN~Va~iiA~n~----~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFD 185 (344)
T KOG2170|consen 110 PLVLSFHGWTGTGKNYVAEIIAENL----YRGGLRSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFD 185 (344)
T ss_pred CeEEEecCCCCCchhHHHHHHHHHH----HhccccchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEec
Confidence 3556689999999998888887644 445555555544333221111100 000 0233334567899999
Q ss_pred ccccCChHHHHHHHHHHHh
Q psy17703 417 EFDKMSDTTRSILHEVMEQ 435 (720)
Q Consensus 417 Eidkm~~~~~~~L~e~mE~ 435 (720)
|.|||++...+.|...++.
T Consensus 186 E~DKmp~gLld~lkpfLdy 204 (344)
T KOG2170|consen 186 EVDKLPPGLLDVLKPFLDY 204 (344)
T ss_pred hhhhcCHhHHHHHhhhhcc
Confidence 9999999999999888874
No 317
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=94.47 E-value=0.043 Score=60.16 Aligned_cols=64 Identities=23% Similarity=0.389 Sum_probs=60.0
Q ss_pred hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCC
Q psy17703 654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQ 717 (720)
Q Consensus 654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~ 717 (720)
-|.+..++.|+..+||..-+.+....+|+++++...-.+-..|+.-+.+|+..++|++||..|.
T Consensus 137 PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGe 200 (423)
T COG1239 137 PGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGE 200 (423)
T ss_pred CcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccc
Confidence 5777889999999999999999999999999999888888999999999999999999999885
No 318
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.35 E-value=0.031 Score=55.11 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=22.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.|++.|+||+|||++++.+++.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999865
No 319
>PRK13947 shikimate kinase; Provisional
Probab=94.34 E-value=0.036 Score=53.85 Aligned_cols=27 Identities=30% Similarity=0.234 Sum_probs=23.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCc
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQ 373 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~ 373 (720)
||+|+|+||+|||++++.+++.+....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~ 29 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGF 29 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 799999999999999999999876433
No 320
>PRK08118 topology modulation protein; Reviewed
Probab=94.33 E-value=0.032 Score=54.39 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.7
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.|+++|+||+|||++++.+++.+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 321
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.16 E-value=0.047 Score=52.87 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=24.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
..+|+|+|+||+|||++++.+++.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999998753
No 322
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.12 E-value=0.04 Score=52.27 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+|+|+|+||+|||++++.+++.+.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 323
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.01 E-value=0.045 Score=44.96 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.2
Q ss_pred EEEEcCCCCHHHHHHHHHHhhC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~ 369 (720)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999875
No 324
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.90 E-value=0.048 Score=53.58 Aligned_cols=23 Identities=17% Similarity=0.405 Sum_probs=20.9
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~p 370 (720)
|+++|+||+|||++++.+++...
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999998664
No 325
>PRK03839 putative kinase; Provisional
Probab=93.88 E-value=0.045 Score=53.83 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=22.0
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.|+|.|+||+|||++++.+++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999764
No 326
>PRK14530 adenylate kinase; Provisional
Probab=93.81 E-value=0.051 Score=55.17 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=22.8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.+|+|+|+||+|||++++.+++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998775
No 327
>PF13245 AAA_19: Part of AAA domain
Probab=93.77 E-value=0.053 Score=45.61 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=16.5
Q ss_pred cEEEEcCCCCHHH-HHHHHHHhhC
Q psy17703 347 NILLCGDPGTSKS-QLLSYVYDLV 369 (720)
Q Consensus 347 ~vLL~G~PGtGKS-~ll~~va~~~ 369 (720)
-+++.|+|||||| ++++.++.+.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 3556999999999 4555565544
No 328
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.74 E-value=0.045 Score=55.30 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=18.8
Q ss_pred CCcc-EEEEcCCCCHHHHHHHHHHhhC
Q psy17703 344 AEIN-ILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 344 g~i~-vLL~G~PGtGKS~ll~~va~~~ 369 (720)
..-+ .++.||||||||+++..+...+
T Consensus 15 ~~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 15 SSNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp TSSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEECCCCCChHHHHHHHHHHh
Confidence 3445 8999999999998776665544
No 329
>PRK00625 shikimate kinase; Provisional
Probab=93.68 E-value=0.049 Score=53.47 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=22.2
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
||+|+|.||+|||++++.+++.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999998764
No 330
>KOG3595|consensus
Probab=93.67 E-value=0.12 Score=66.62 Aligned_cols=144 Identities=19% Similarity=0.208 Sum_probs=79.3
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC-CCCccccCCccccccccceeecCccccc-eeeecceeeec--CCceeecccccc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV-PRSQYTSGKGSSAVGLTAYITKDPETRQ-MVLQTGALVLA--DSGVCCIDEFDK 420 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~-pr~~~~~g~~ss~~glta~~~~~~~~~~-~~~~~G~l~la--d~gI~~IDEidk 420 (720)
...++++|+||+|||.++....... ++.++. ...+.. .+....+.-.... ....++...-. ..-++|+||++-
T Consensus 127 ~k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~--~~fs~~-ts~~~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~ddinm 203 (1395)
T KOG3595|consen 127 GKPVLLVGPTGTGKTVLVLSELRSLQDREVYL--LNFSSV-TSSELLQEIIESKLDKRRSGNYGPPLGKKLVLFVDDINM 203 (1395)
T ss_pred CCeEEEEcCCCCCeeeehHHHHHhcccchheE--Eeeeee-ccHHHHHHHHHHHHHHhcccCCCCCCCceeEEEEeccCC
Confidence 4789999999999999887776644 333222 111110 0000000000000 00111111111 123789999964
Q ss_pred CCh------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecC
Q psy17703 421 MSD------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLD 494 (720)
Q Consensus 421 m~~------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d 494 (720)
-.. .....+++.+|.+-+.-...+.... --++.+++|+||.+|+.+ .+++.+++.|- ++.+..
T Consensus 204 p~~~~yg~q~~~~~lrq~~e~~g~~~~~~~~~~~-i~~i~~~~a~~~~~~gr~---------~i~~r~~r~f~-~~~~~~ 272 (1395)
T KOG3595|consen 204 PALDKYGDQPPIELLRQMLEHGGFYDRKKSEWVE-IENVQLVGAMNPPGGGRN---------DITERFLRHFL-IVSLNY 272 (1395)
T ss_pred chhhhcCCccHHHHHHHHHHhceeecccccceeE-EeeeEEEeecCCCCCccC---------cccHHHHHHee-eEeeCC
Confidence 322 2366888888887665443333333 346899999998554433 47888888885 666666
Q ss_pred CChHHHHH
Q psy17703 495 PQSEQFDA 502 (720)
Q Consensus 495 ~~~~~~d~ 502 (720)
|..+....
T Consensus 273 ~~~~sl~~ 280 (1395)
T KOG3595|consen 273 PSQESLTQ 280 (1395)
T ss_pred CChhhHHH
Confidence 66655443
No 331
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=93.57 E-value=0.34 Score=49.76 Aligned_cols=125 Identities=10% Similarity=0.028 Sum_probs=71.6
Q ss_pred ccEEEEcCCC-CHHHHHHHHHHhhCCCCccccCCccccccccc--------eeecCccccceeeecc-eeeecCCceeec
Q psy17703 346 INILLCGDPG-TSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTA--------YITKDPETRQMVLQTG-ALVLADSGVCCI 415 (720)
Q Consensus 346 i~vLL~G~PG-tGKS~ll~~va~~~pr~~~~~g~~ss~~glta--------~~~~~~~~~~~~~~~G-~l~lad~gI~~I 415 (720)
..-|+.|+.+ ++|..++..+++.+-......+...+..-+.. ...+-...++..-... .-..+...|++|
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII 95 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAII 95 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEEE
Confidence 4678999998 99999999988866322111111111110000 0000000000000000 001234569999
Q ss_pred cccccCChHHHHHHHHHHHhceEeeeccCeEEeecCce-EEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecC
Q psy17703 416 DEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNART-SILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLD 494 (720)
Q Consensus 416 DEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~-~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d 494 (720)
+++++|+....++|+..+|+-. .++ .++.|.|+. .++|+++||+- .+.+..
T Consensus 96 ~~ae~mt~~AANALLKtLEEPP-------------~~t~fILit~~~~--------------~LLpTIrSRCq-~i~~~~ 147 (263)
T PRK06581 96 YSAELMNLNAANSCLKILEDAP-------------KNSYIFLITSRAA--------------SIISTIRSRCF-KINVRS 147 (263)
T ss_pred echHHhCHHHHHHHHHhhcCCC-------------CCeEEEEEeCChh--------------hCchhHhhceE-EEeCCC
Confidence 9999999999999999998642 223 345555544 48999999995 566665
Q ss_pred CChH
Q psy17703 495 PQSE 498 (720)
Q Consensus 495 ~~~~ 498 (720)
|...
T Consensus 148 p~~~ 151 (263)
T PRK06581 148 SILH 151 (263)
T ss_pred CCHH
Confidence 5543
No 332
>PRK07261 topology modulation protein; Provisional
Probab=93.55 E-value=0.056 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
.|+++|+||+|||+|++.+++.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998754
No 333
>PRK13949 shikimate kinase; Provisional
Probab=93.49 E-value=0.057 Score=52.77 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=22.2
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+|+|+|+||+|||++++.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998775
No 334
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.49 E-value=0.05 Score=51.54 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.2
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+++++|+||+|||+++..++..+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999987654
No 335
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.43 E-value=0.047 Score=53.32 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=18.4
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.-+++++|+||+|||++++.+...+.
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999998876553
No 336
>PRK06762 hypothetical protein; Provisional
Probab=93.43 E-value=0.063 Score=51.91 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=21.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-|+|+|.||+|||++++.+++.++
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998775
No 337
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.28 E-value=0.067 Score=48.27 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+|+++|++|+|||+|++.+.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 489999999999999999986443
No 338
>PRK14531 adenylate kinase; Provisional
Probab=93.26 E-value=0.073 Score=52.60 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.|+++|+||+|||++++.+++...
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988653
No 339
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.17 E-value=0.075 Score=52.61 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+|+++|+||+|||++++.+++...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998653
No 340
>PF05729 NACHT: NACHT domain
Probab=93.08 E-value=0.066 Score=51.06 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.8
Q ss_pred EEEEcCCCCHHHHHHHHHHhhC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~ 369 (720)
++|.|+||+|||++++.++..+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999988755
No 341
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.08 E-value=0.072 Score=50.54 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEcCCCCHHHHHHHHHHhhC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~ 369 (720)
++|.|+||+|||++++.+++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 6899999999999999998864
No 342
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.07 E-value=0.064 Score=51.69 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.7
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~p 370 (720)
++|+|+||+|||++++.+++.++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 47899999999999999998775
No 343
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.05 E-value=0.086 Score=51.64 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
.|+|.|+||+|||++++.+++.++.
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5899999999999999999988764
No 344
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.04 E-value=0.18 Score=46.76 Aligned_cols=51 Identities=27% Similarity=0.429 Sum_probs=40.9
Q ss_pred CcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCC
Q psy17703 663 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 715 (720)
Q Consensus 663 ~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~ 715 (720)
++..+||+...+.+++.+++|+|++..+++ .|..+.|+..-.|+|+.||..
T Consensus 64 ~ill~DEiNrappktQsAlLeam~Er~Vt~--~g~~~~lp~pf~ViATqNp~e 114 (131)
T PF07726_consen 64 NILLADEINRAPPKTQSALLEAMEERQVTI--DGQTYPLPDPFFVIATQNPVE 114 (131)
T ss_dssp SEEEEETGGGS-HHHHHHHHHHHHHSEEEE--TTEEEE--SS-EEEEEE-TT-
T ss_pred ceeeecccccCCHHHHHHHHHHHHcCeEEe--CCEEEECCCcEEEEEecCccc
Confidence 456789999999999999999999988776 789999999999999999964
No 345
>PRK14526 adenylate kinase; Provisional
Probab=92.88 E-value=0.088 Score=53.44 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=21.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+++|+|+||+|||++++.+++...
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~ 25 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELN 25 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999997654
No 346
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.85 E-value=0.14 Score=47.91 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=25.0
Q ss_pred CCCCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 342 TPAEINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 342 ~pg~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.+.+-.++|.|+.|+|||++++.+++.+.
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34556799999999999999999999875
No 347
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=92.81 E-value=0.12 Score=57.00 Aligned_cols=92 Identities=18% Similarity=0.228 Sum_probs=49.8
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCC---ccccCCcccc---c--cccceee-c---Cccccc-eeee---cceeee
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRS---QYTSGKGSSA---V--GLTAYIT-K---DPETRQ-MVLQ---TGALVL 407 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~---~~~~g~~ss~---~--glta~~~-~---~~~~~~-~~~~---~G~l~l 407 (720)
...++++.|+.|||||.+++++...+... +...+....+ + |.|.... . ...... .... .-.-.+
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~~~~~~~~~~~~~~~~l 100 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNEKSQCKISKNSRLRERL 100 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccccccccccccccccchhhhhh
Confidence 45799999999999999999998866332 2211111111 1 1111100 0 000000 0000 001123
Q ss_pred cCCceeeccccccCChHHHHHHHHHHHh
Q psy17703 408 ADSGVCCIDEFDKMSDTTRSILHEVMEQ 435 (720)
Q Consensus 408 ad~gI~~IDEidkm~~~~~~~L~e~mE~ 435 (720)
.+-.+++|||+.-++.....++...|.+
T Consensus 101 ~~~~~lIiDEism~~~~~l~~i~~~lr~ 128 (364)
T PF05970_consen 101 RKADVLIIDEISMVSADMLDAIDRRLRD 128 (364)
T ss_pred hhheeeecccccchhHHHHHHHHHhhhh
Confidence 3446899999998888877777666643
No 348
>PRK08233 hypothetical protein; Provisional
Probab=92.79 E-value=0.086 Score=51.52 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.=|.+.|+||+|||++++.++..++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3477899999999999999998876
No 349
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.76 E-value=0.073 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
-++++|+||+|||++++.+++.+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998765
No 350
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.68 E-value=0.09 Score=51.51 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-++|+|+||+|||++++.++..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 378999999999999999998764
No 351
>PRK14528 adenylate kinase; Provisional
Probab=92.65 E-value=0.1 Score=51.82 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
++++.|+||+|||++++.+++...
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987653
No 352
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.64 E-value=0.099 Score=53.76 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=23.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...|+|+|+||+|||++++.+++...
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 353
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=92.63 E-value=0.13 Score=37.41 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=24.1
Q ss_pred eeecccCCceeeeeeccCcccCCccCCCCCC
Q psy17703 288 FFRCIVCNYSTTVEIDRGRIHEPTLCTNCST 318 (720)
Q Consensus 288 ~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~ 318 (720)
.|+|..||+.......... ..+..||.|+.
T Consensus 5 ~y~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (41)
T smart00834 5 EYRCEDCGHTFEVLQKISD-DPLATCPECGG 34 (41)
T ss_pred EEEcCCCCCEEEEEEecCC-CCCCCCCCCCC
Confidence 5899999998887765433 67788999996
No 354
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.63 E-value=0.077 Score=57.00 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=23.4
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.-+++|+|+||||||.|+.++++.+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998764
No 355
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=92.56 E-value=0.094 Score=62.94 Aligned_cols=41 Identities=22% Similarity=0.399 Sum_probs=29.9
Q ss_pred ccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 330 HFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 330 ~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.+.+.|.--+.....+-.++|.|+||||||++++++.+.+.
T Consensus 323 ~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~ 363 (720)
T TIGR01448 323 GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAE 363 (720)
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34556664444443455799999999999999999887653
No 356
>PRK06217 hypothetical protein; Validated
Probab=92.51 E-value=0.11 Score=51.29 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=22.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+|+|.|.||+|||++++.+++.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998774
No 357
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.45 E-value=0.095 Score=51.90 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
..+.|+||+|+|||++++.++...+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCC
Confidence 36889999999999999999887643
No 358
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=92.41 E-value=0.11 Score=52.63 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.2
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.|+++|+||+|||++++.+++...
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 379999999999999999987654
No 359
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.29 E-value=0.13 Score=50.48 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.-+|+|+|++|+|||++++.+++.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35799999999999999999998764
No 360
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=92.27 E-value=0.14 Score=39.48 Aligned_cols=30 Identities=20% Similarity=0.466 Sum_probs=23.9
Q ss_pred eeecccCCceeeeeeccCcccCCccCCCCCC
Q psy17703 288 FFRCIVCNYSTTVEIDRGRIHEPTLCTNCST 318 (720)
Q Consensus 288 ~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~ 318 (720)
.|+|.+||++...+..... ..+..||.|+.
T Consensus 5 ey~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (52)
T TIGR02605 5 EYRCTACGHRFEVLQKMSD-DPLATCPECGG 34 (52)
T ss_pred EEEeCCCCCEeEEEEecCC-CCCCCCCCCCC
Confidence 5999999998888764333 56778999997
No 361
>PRK02496 adk adenylate kinase; Provisional
Probab=92.19 E-value=0.099 Score=51.56 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=21.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.+++.|+||+|||++++.+++...
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998654
No 362
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=92.18 E-value=0.12 Score=49.99 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
-+++.||.|+|||+|++.++.+.+.
T Consensus 31 ~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccCC
Confidence 5899999999999999999987763
No 363
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.13 E-value=0.12 Score=49.81 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=17.7
Q ss_pred EEEEcCCCCHHHHHHHHHHhh
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~ 368 (720)
|.|.|.||||||+|++.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999976
No 364
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=92.11 E-value=0.12 Score=55.25 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.7
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.+++.|+||+|||++++.+++.++
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~ 27 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP 27 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC
Confidence 478899999999999999998775
No 365
>PRK14527 adenylate kinase; Provisional
Probab=92.08 E-value=0.14 Score=50.97 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
--++++|+||+|||++++.+++...
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999987553
No 366
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=92.07 E-value=0.13 Score=49.74 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=23.3
Q ss_pred CCCCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 342 TPAEINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 342 ~pg~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
.+..+.++++|++|+|||+|++.+...
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcC
Confidence 345789999999999999999999753
No 367
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=92.05 E-value=0.16 Score=59.52 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=28.4
Q ss_pred hhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 333 DKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 333 d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
+||+.-+.-.-.+-..+|.|+||||||+++..+...+
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l 184 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLAL 184 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 7887666555456788999999999999887766543
No 368
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=92.04 E-value=0.077 Score=54.11 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHH
Q psy17703 345 EINILLCGDPGTSKSQLLSYVY 366 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va 366 (720)
...+|++|+||+|||+++++++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 3569999999999999999874
No 369
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.01 E-value=0.098 Score=60.96 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=23.6
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
....|+|+|.||+|||++++.+++.+.
T Consensus 391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~ 417 (568)
T PRK05537 391 QGFTVFFTGLSGAGKSTIAKALMVKLM 417 (568)
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHhh
Confidence 345899999999999999999998764
No 370
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.93 E-value=0.12 Score=50.68 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
-++|+||+|+|||++++.+++..+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 4789999999999999999987654
No 371
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.90 E-value=0.15 Score=41.08 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
..+|.|+.|+|||+|+.++.-++
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 372
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.88 E-value=0.12 Score=46.56 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~ 367 (720)
.|+++|.||+|||+|++++.+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999985
No 373
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.87 E-value=0.15 Score=47.77 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.9
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~p 370 (720)
|.+.|+||+|||++++.+++.+.
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998764
No 374
>PRK00279 adk adenylate kinase; Reviewed
Probab=91.87 E-value=0.14 Score=51.99 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=21.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.|+++|+||+|||++++.+++...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998765
No 375
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.83 E-value=0.15 Score=50.24 Aligned_cols=86 Identities=14% Similarity=0.119 Sum_probs=47.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceee-cCc-cc-cce-eeecceeeecCCceeeccccc-c
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYIT-KDP-ET-RQM-VLQTGALVLADSGVCCIDEFD-K 420 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~-~~~-~~-~~~-~~~~G~l~lad~gI~~IDEid-k 420 (720)
--+.|+|+.|+|||+|++.++.+.+.. +|.-. .-+...+.. +.. .+ |+. .+.-......+..++++||-. .
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~-~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~ 101 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDE-WDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAY 101 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCC---CcEEE-ECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 467899999999999999999987531 12110 001001111 111 00 110 000111123366899999975 5
Q ss_pred CChHHHHHHHHHHHh
Q psy17703 421 MSDTTRSILHEVMEQ 435 (720)
Q Consensus 421 m~~~~~~~L~e~mE~ 435 (720)
++...+..+.+++.+
T Consensus 102 LD~~~~~~l~~~l~~ 116 (177)
T cd03222 102 LDIEQRLNAARAIRR 116 (177)
T ss_pred CCHHHHHHHHHHHHH
Confidence 677777777777653
No 376
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=91.81 E-value=0.13 Score=62.10 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=53.3
Q ss_pred ccchhhhhhhhcCCC-CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcccccccc---ceeecCc-----cc-cce-
Q psy17703 330 HFTDKQLVRLQETPA-EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLT---AYITKDP-----ET-RQM- 398 (720)
Q Consensus 330 ~~~d~Q~iklQE~pg-~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glt---a~~~~~~-----~~-~~~- 398 (720)
.+.+.|.--+...-. +--++|.|+||||||++++.+...+... |.....+..| +...... .| ..+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~----g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~ 427 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAA----GYRVIGAALSGKAAEGLQAESGIESRTLASLE 427 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhC----CCeEEEEeCcHHHHHHHHhccCCceeeHHHHH
Confidence 355666654443322 2357899999999999999987654321 1100000000 0000000 00 001
Q ss_pred -eeecceeeecCCceeeccccccCChHHHHHHHHHH
Q psy17703 399 -VLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVM 433 (720)
Q Consensus 399 -~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~m 433 (720)
....+.-.+....+++|||+..++......|+...
T Consensus 428 ~~~~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~ 463 (744)
T TIGR02768 428 YAWANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEA 463 (744)
T ss_pred hhhccCcccCCCCcEEEEECcccCCHHHHHHHHHHH
Confidence 01222223446789999999999987766666644
No 377
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.70 E-value=0.14 Score=50.68 Aligned_cols=26 Identities=35% Similarity=0.691 Sum_probs=23.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.-+++++|++|+|||++++++....|
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46899999999999999999998776
No 378
>PLN02200 adenylate kinase family protein
Probab=91.70 E-value=0.14 Score=52.82 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=22.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...|++.|+||+|||++++.+++...
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999988664
No 379
>PLN02348 phosphoribulokinase
Probab=91.67 E-value=1.5 Score=48.35 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.8
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..+=|-+.|++|+|||++++.+++.+.
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 446788999999999999999999875
No 380
>KOG2227|consensus
Probab=91.63 E-value=0.19 Score=55.76 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=30.1
Q ss_pred ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEee-cCceEEEecccCC
Q psy17703 411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQL-NARTSILAAANPC 462 (720)
Q Consensus 411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l-~a~~~iiaaaNp~ 462 (720)
-++++||.|.+-...+..|+++.| +..+ +.++.+++-||..
T Consensus 258 ~llVlDEmD~L~tr~~~vLy~lFe-----------wp~lp~sr~iLiGiANsl 299 (529)
T KOG2227|consen 258 LLLVLDEMDHLITRSQTVLYTLFE-----------WPKLPNSRIILIGIANSL 299 (529)
T ss_pred EEEEechhhHHhhcccceeeeehh-----------cccCCcceeeeeeehhhh
Confidence 378899999988777777776654 2333 4689999999954
No 381
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.60 E-value=0.14 Score=55.79 Aligned_cols=28 Identities=25% Similarity=0.649 Sum_probs=25.3
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
...|||+.|++|+|||++++++...+|.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCC
Confidence 5789999999999999999999987764
No 382
>PTZ00301 uridine kinase; Provisional
Probab=91.52 E-value=1 Score=45.61 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=19.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
=|.+.|+||+|||+|++.+.+.+
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHH
Confidence 47789999999999999887654
No 383
>PRK14529 adenylate kinase; Provisional
Probab=91.51 E-value=0.16 Score=51.86 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+|+|.|+||+|||++++.+++...
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999998764
No 384
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=91.49 E-value=0.16 Score=47.83 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.6
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
+.|+||+|+|||+|++.+++..+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCc
Confidence 689999999999999999987654
No 385
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.44 E-value=0.14 Score=48.92 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEEcCCCCHHHHHHHHHHhhC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~ 369 (720)
++++|.||+|||++++.+++.+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999876
No 386
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.44 E-value=0.17 Score=49.31 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=24.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRS 372 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~ 372 (720)
.-+|.|+|.+|+|||++.+.+|+.+...
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~ 29 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLP 29 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCC
Confidence 3579999999999999999999988643
No 387
>COG1485 Predicted ATPase [General function prediction only]
Probab=91.31 E-value=0.14 Score=54.98 Aligned_cols=26 Identities=27% Similarity=0.557 Sum_probs=23.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
--+.|+|+-|.|||.|+-.....+|.
T Consensus 66 ~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 66 RGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred ceEEEECCCCccHHHHHHHHHhhCCc
Confidence 46899999999999999999988874
No 388
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.31 E-value=0.17 Score=55.01 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=25.5
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
+..|||+.|++|+|||++++++....|.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 5789999999999999999999988774
No 389
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.30 E-value=0.15 Score=50.10 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=17.5
Q ss_pred EEEEcCCCCHHHHHHHHHHh
Q psy17703 348 ILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~ 367 (720)
+|+.||||+|||+|+..++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~ 21 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLY 21 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999877654
No 390
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=91.20 E-value=0.16 Score=48.91 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.4
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
+++++|+|+||+|||+|++++.+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~ 23 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQ 23 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998864
No 391
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.19 E-value=0.16 Score=50.82 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
--+.|+|++|+|||+|++.+++..+
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4589999999999999999999876
No 392
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.16 E-value=0.16 Score=52.11 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
=|-|+||.|||||+|++.++.+...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3778999999999999999987753
No 393
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=91.02 E-value=0.19 Score=48.85 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=22.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
+++|+|.||+|||++++.+++.+..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~ 28 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGY 28 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999987754
No 394
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=90.94 E-value=0.18 Score=49.02 Aligned_cols=21 Identities=24% Similarity=0.494 Sum_probs=19.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~ 367 (720)
.|++.|.||||||++++.++.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~ 22 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLRE 22 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHH
Confidence 589999999999999999983
No 395
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=90.82 E-value=0.18 Score=49.05 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.+|+|+|+||+|||+|++.+..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999988864
No 396
>PRK13948 shikimate kinase; Provisional
Probab=90.70 E-value=0.22 Score=49.32 Aligned_cols=28 Identities=21% Similarity=0.052 Sum_probs=24.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRS 372 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~ 372 (720)
.-+|+|+|.+|+|||++.+.+++.+...
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg~~ 37 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALMLH 37 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4689999999999999999999877543
No 397
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=90.69 E-value=0.17 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~p 370 (720)
|+|+|.||+|||++++.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998764
No 398
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=90.68 E-value=0.15 Score=50.72 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=21.2
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~p 370 (720)
|+|.|.||+|||++++.+++.+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 78999999999999999999774
No 399
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=90.68 E-value=0.18 Score=48.35 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=23.1
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCCCCccc
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVPRSQYT 375 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~pr~~~~ 375 (720)
|-+-|+||+|||++++.+++.+.-..+.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5678999999999999999987654443
No 400
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.67 E-value=0.18 Score=50.49 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.2
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+++.||+|+|||++++++....+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 379999999999999999887664
No 401
>KOG2383|consensus
Probab=90.62 E-value=0.11 Score=56.44 Aligned_cols=26 Identities=31% Similarity=0.607 Sum_probs=22.1
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
--+.|+|+-|||||+|.-......|.
T Consensus 115 kGlYlYG~VGcGKTmLMDlFy~~~~~ 140 (467)
T KOG2383|consen 115 KGLYLYGSVGCGKTMLMDLFYDALPP 140 (467)
T ss_pred ceEEEecccCcchhHHHHHHhhcCCc
Confidence 36899999999999999888876664
No 402
>PLN02674 adenylate kinase
Probab=90.55 E-value=0.22 Score=51.65 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..+|+|.|+||+||+++++.+++...
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998654
No 403
>PRK05541 adenylylsulfate kinase; Provisional
Probab=90.53 E-value=0.22 Score=48.67 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=23.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...|+|+|+||+|||++++.+++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988764
No 404
>PRK13946 shikimate kinase; Provisional
Probab=90.50 E-value=0.24 Score=48.95 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=24.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
.-+|+|+|.||+|||++++.+++.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 468999999999999999999998753
No 405
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=90.48 E-value=0.21 Score=47.57 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
+.|+++|+||+|||+|+..+..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~ 22 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCE 22 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998865
No 406
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=90.45 E-value=0.37 Score=56.30 Aligned_cols=61 Identities=21% Similarity=0.371 Sum_probs=57.2
Q ss_pred hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCC
Q psy17703 654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC 714 (720)
Q Consensus 654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~ 714 (720)
.|.+..++.|+.++||+..++++...+|.++|++..++|...|.+.+++++..++|.-||.
T Consensus 86 pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~ 146 (584)
T PRK13406 86 RGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGA 146 (584)
T ss_pred CCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCCh
Confidence 4667788999999999999999999999999999999999999999999999999997776
No 407
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=90.43 E-value=0.2 Score=47.53 Aligned_cols=22 Identities=50% Similarity=0.714 Sum_probs=19.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
+.|+++|+||+|||+|++.+..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~ 22 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTD 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999998864
No 408
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=90.37 E-value=0.21 Score=50.40 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=23.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
..-|.+.|++|+|||+|++.++..++.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456889999999999999999988763
No 409
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=90.30 E-value=0.22 Score=46.48 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
++|+++|+||+|||+|+..+...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999988643
No 410
>PRK03846 adenylylsulfate kinase; Provisional
Probab=90.27 E-value=0.14 Score=51.26 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=22.3
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
..-+.|+|.+|+|||++++.++..+
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999866
No 411
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=90.26 E-value=0.22 Score=46.21 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
++|+++|+||+|||+|+..+...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999988753
No 412
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.25 E-value=0.22 Score=49.75 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEcCCCCHHHHHHHHHHhhC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~ 369 (720)
|.|.|++|+|||+|++.+.+.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999887
No 413
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=90.23 E-value=0.27 Score=49.13 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=24.5
Q ss_pred hcCCCCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 340 QETPAEINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 340 QE~pg~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
.+.++.+.|+++|+||+|||+|++.+...
T Consensus 36 ~~~~~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 36 RKRSGIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred hhhcCCCeEEEECCCCCCHHHHHHHHhcc
Confidence 44456789999999999999999988763
No 414
>PLN02459 probable adenylate kinase
Probab=90.22 E-value=0.24 Score=51.70 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..+++|.|+||+|||++++.+++...
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~ 54 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLG 54 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998654
No 415
>PF13479 AAA_24: AAA domain
Probab=90.20 E-value=0.16 Score=51.56 Aligned_cols=21 Identities=38% Similarity=0.716 Sum_probs=19.0
Q ss_pred CccEEEEcCCCCHHHHHHHHH
Q psy17703 345 EINILLCGDPGTSKSQLLSYV 365 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~v 365 (720)
.+.+||+|+||+|||+++..+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 578999999999999988877
No 416
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=90.09 E-value=0.16 Score=47.23 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=21.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+-.+.++|++|+|||+|++.++...+
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 34688999999999999999976543
No 417
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=89.99 E-value=0.24 Score=47.47 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=18.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
++|+++|+||+|||+|++.+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999987653
No 418
>KOG0060|consensus
Probab=89.92 E-value=0.23 Score=56.48 Aligned_cols=28 Identities=36% Similarity=0.598 Sum_probs=24.9
Q ss_pred CCCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 343 PAEINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 343 pg~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
|.+-|+|++||.|||||+|+|.++.+-|
T Consensus 459 ~~g~~LLItG~sG~GKtSLlRvlggLWp 486 (659)
T KOG0060|consen 459 PSGQNLLITGPSGCGKTSLLRVLGGLWP 486 (659)
T ss_pred cCCCeEEEECCCCCchhHHHHHHhcccc
Confidence 3567999999999999999999998766
No 419
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=89.91 E-value=0.24 Score=47.40 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
++|+++|+||+|||+|++.+..
T Consensus 1 iki~i~G~~~~GKSsli~~l~~ 22 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTT 22 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999998865
No 420
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=89.90 E-value=0.23 Score=47.46 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~ 368 (720)
+|+++|++|+|||+|+..+...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhh
Confidence 6899999999999999998754
No 421
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.89 E-value=0.22 Score=52.36 Aligned_cols=29 Identities=31% Similarity=0.560 Sum_probs=26.2
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRS 372 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~ 372 (720)
+..++++.|++|+|||++++++....|..
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred cceEEEEECCCccccchHHHHHhhhcccc
Confidence 57899999999999999999999988754
No 422
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=89.83 E-value=0.26 Score=49.44 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.1
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.-+++.|.||+|||++++.++..+.
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~ 28 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRA 28 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999998764
No 423
>PRK14737 gmk guanylate kinase; Provisional
Probab=89.81 E-value=0.28 Score=48.76 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=23.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
..-+.|+||+|+|||+|++.+.+..|.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~ 30 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPD 30 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCc
Confidence 356899999999999999999887664
No 424
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=89.73 E-value=0.25 Score=53.53 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.0
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+||.|+|||+++|.+|.+..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 467889999999999999998664
No 425
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=89.71 E-value=0.26 Score=55.05 Aligned_cols=63 Identities=32% Similarity=0.519 Sum_probs=58.5
Q ss_pred hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCC
Q psy17703 654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDS 716 (720)
Q Consensus 654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~ 716 (720)
-|-+.++.+|+.++||+-.++.+.-.++.+-||+..++|+.++-..+++|+-..+||+||--.
T Consensus 276 PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpc 338 (490)
T COG0606 276 PGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPC 338 (490)
T ss_pred CCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCc
Confidence 466789999999999999999998899999999999999999999999999999999999653
No 426
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=89.71 E-value=0.29 Score=48.21 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.2
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
.+.++|++|+|||++++.++..+..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4789999999999999999987753
No 427
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=89.68 E-value=0.45 Score=46.04 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
+--++|+|++|+|||+|+.++...
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 367889999999999999998753
No 428
>PRK00889 adenylylsulfate kinase; Provisional
Probab=89.67 E-value=0.24 Score=48.38 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=21.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+|.||+|||++++.++..+.
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998763
No 429
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=89.64 E-value=0.5 Score=48.28 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=19.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
-+-++||.|+|||+|+..+..+.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 57899999999999999886543
No 430
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=89.63 E-value=0.27 Score=46.81 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
++++++|+||+|||+|++.+..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~ 22 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVE 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998864
No 431
>PRK05480 uridine/cytidine kinase; Provisional
Probab=89.48 E-value=0.27 Score=49.56 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=22.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
..-|.|.|++|+|||+|++.+++.+
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999877
No 432
>PRK06547 hypothetical protein; Provisional
Probab=89.46 E-value=0.29 Score=47.97 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=21.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-..|++.|++|+|||++++.+++.+.
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35678889999999999999988643
No 433
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=89.42 E-value=0.19 Score=53.08 Aligned_cols=34 Identities=15% Similarity=0.481 Sum_probs=25.8
Q ss_pred hheeecccCCceeeeeeccCcccCCccCCCCCCCCcceeecc
Q psy17703 286 EAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHN 327 (720)
Q Consensus 286 ~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~~~~~~~ 327 (720)
+..|+|.+||+....-. ..||+|+.|.+++.+.+
T Consensus 352 ~~~YRC~~CGF~a~~l~--------W~CPsC~~W~TikPir~ 385 (389)
T COG2956 352 KPRYRCQNCGFTAHTLY--------WHCPSCRAWETIKPIRG 385 (389)
T ss_pred cCCceecccCCcceeee--------eeCCCcccccccCCccc
Confidence 56799999998765443 34999999988766543
No 434
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=89.42 E-value=0.28 Score=52.51 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=24.3
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+.-++++.|++|+|||++++++.+.+|
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 457999999999999999999998775
No 435
>PLN02165 adenylate isopentenyltransferase
Probab=89.40 E-value=0.38 Score=52.01 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
...+.|+||+|+|||+|+..+++.++.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~ 69 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPS 69 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCC
Confidence 346899999999999999999998764
No 436
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=89.35 E-value=0.27 Score=46.69 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=18.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~ 367 (720)
+|+++|+||+|||+|++.+..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~ 21 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKH 21 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhc
Confidence 589999999999999998864
No 437
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=89.33 E-value=0.3 Score=46.14 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.2
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..|+++|+||+|||+|++.+..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999988864
No 438
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=89.32 E-value=0.24 Score=47.10 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=18.3
Q ss_pred EEcCCCCHHHHHHHHHHhhC
Q psy17703 350 LCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 350 L~G~PGtGKS~ll~~va~~~ 369 (720)
|+|+||+|||++++.+++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999865
No 439
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=89.32 E-value=0.29 Score=46.43 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.1
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..|+++|+||+|||+|+..+..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999887763
No 440
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=89.31 E-value=0.28 Score=47.05 Aligned_cols=22 Identities=23% Similarity=0.612 Sum_probs=19.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
++|+++|+||+|||+|++.+..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~ 22 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVN 22 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999988864
No 441
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=89.23 E-value=0.3 Score=36.48 Aligned_cols=27 Identities=15% Similarity=0.541 Sum_probs=21.7
Q ss_pred eeecccCCceeeeeeccCcccCCccCCCCCCC
Q psy17703 288 FFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTN 319 (720)
Q Consensus 288 ~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~ 319 (720)
.|.|.+||.+.... ...+..||+|+.+
T Consensus 2 ~Y~C~~Cg~~~~~~-----~~~~irC~~CG~r 28 (44)
T smart00659 2 IYICGECGRENEIK-----SKDVVRCRECGYR 28 (44)
T ss_pred EEECCCCCCEeecC-----CCCceECCCCCce
Confidence 69999999987765 2467899999974
No 442
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=89.22 E-value=0.86 Score=48.75 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=17.6
Q ss_pred CCccEEEEcCCCCHHHHHHHH
Q psy17703 344 AEINILLCGDPGTSKSQLLSY 364 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~ 364 (720)
..-.+|++.-.|.|||.++-.
T Consensus 115 ~k~~~lv~AV~GaGKTEMif~ 135 (441)
T COG4098 115 QKEDTLVWAVTGAGKTEMIFQ 135 (441)
T ss_pred hcCcEEEEEecCCCchhhhHH
Confidence 566899999999999998633
No 443
>PRK04182 cytidylate kinase; Provisional
Probab=89.17 E-value=0.34 Score=47.12 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.2
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
.|+|.|.||+|||++++.+++.+.-
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~ 26 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGL 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4889999999999999999987653
No 444
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=89.12 E-value=0.3 Score=46.55 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=18.7
Q ss_pred cEEEEcCCCCHHHHHHHHHHh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~ 367 (720)
-|+++|+||+|||+|++.+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998864
No 445
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=89.11 E-value=0.29 Score=47.07 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
+.|+++|+||+|||+|+..+..
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~ 25 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSE 25 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 5799999999999999998864
No 446
>PRK01184 hypothetical protein; Provisional
Probab=89.09 E-value=0.31 Score=47.94 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=17.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
-|+|+|+||+|||++++. ++..
T Consensus 3 ~i~l~G~~GsGKsT~a~~-~~~~ 24 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSKI-AREM 24 (184)
T ss_pred EEEEECCCCCCHHHHHHH-HHHc
Confidence 478999999999999874 4433
No 447
>PRK14738 gmk guanylate kinase; Provisional
Probab=89.08 E-value=0.32 Score=49.04 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=21.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..-++|+||+|+|||+|++.+.+..+
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~~~ 38 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRERKL 38 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhcCC
Confidence 45688999999999999999976543
No 448
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=89.06 E-value=0.31 Score=47.03 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-|.+.|+||+|||++++.+++.+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 378999999999999999998764
No 449
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=89.04 E-value=0.3 Score=45.94 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=18.7
Q ss_pred cEEEEcCCCCHHHHHHHHHHh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~ 367 (720)
.|+++|+||+|||+|++.+..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999998864
No 450
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=89.02 E-value=0.29 Score=45.21 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=25.3
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAV 383 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~ 383 (720)
.+-+-|.|+||||||.+++.+|+.+ |..|..|.-+
T Consensus 53 pLVlSfHG~tGtGKn~v~~liA~~l----y~~G~~S~~V 87 (127)
T PF06309_consen 53 PLVLSFHGWTGTGKNFVSRLIAEHL----YKSGMKSPFV 87 (127)
T ss_pred CEEEEeecCCCCcHHHHHHHHHHHH----HhcccCCCce
Confidence 4566799999999999999998754 3344444433
No 451
>PLN02318 phosphoribulokinase/uridine kinase
Probab=88.98 E-value=3.4 Score=48.03 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=23.8
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+-+=|.+.|++|+|||+|++.++..+|
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp 90 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMP 90 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence 456788999999999999999998765
No 452
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=88.94 E-value=0.33 Score=52.27 Aligned_cols=28 Identities=29% Similarity=0.632 Sum_probs=25.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
+.-++++.|++|+|||++++++....|.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCc
Confidence 5679999999999999999999887763
No 453
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=88.93 E-value=0.31 Score=52.62 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=23.8
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...|+|+.|++|+|||++++++....+
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 456999999999999999999988663
No 454
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=88.93 E-value=0.27 Score=45.90 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.8
Q ss_pred EEEEcCCCCHHHHHHHHHHhh
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~ 368 (720)
|.|+|++|+|||+|++.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999998753
No 455
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=88.93 E-value=0.3 Score=49.14 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=20.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
+.-++++|+||+|||+++..++..
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~ 35 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVN 35 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 446899999999999999877643
No 456
>PRK13695 putative NTPase; Provisional
Probab=88.90 E-value=0.32 Score=47.52 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
+++|.|+||+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999987653
No 457
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=88.88 E-value=0.32 Score=50.66 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=22.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
+--+.|+||.|+|||+|++.+++++++
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 345778999999999999999987763
No 458
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=88.87 E-value=0.28 Score=46.49 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=18.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~ 367 (720)
+|+++|+||+|||+|++.+..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~ 21 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKP 21 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcc
Confidence 589999999999999988865
No 459
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=88.83 E-value=0.3 Score=48.68 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.7
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
|.+.|+||+|||++++.++..+..
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 678999999999999999998864
No 460
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=88.74 E-value=0.79 Score=46.53 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
--++|+||.|.|||++++.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4588999999999999999984
No 461
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=88.74 E-value=0.33 Score=46.10 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
+.++++|++|+|||+|++.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVK 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5789999999999999998875
No 462
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=88.64 E-value=0.34 Score=46.18 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=19.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
++|+++|++|+|||+|+..+..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999988763
No 463
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=88.57 E-value=0.33 Score=49.13 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.4
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+-.+.|+|+.|+|||+|++.++...+
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 34688999999999999999987664
No 464
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=88.56 E-value=0.35 Score=45.31 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=19.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
+.|+++|+||+|||+++.++..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~ 23 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAG 23 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHC
Confidence 5799999999999999998864
No 465
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=88.47 E-value=0.25 Score=61.20 Aligned_cols=99 Identities=14% Similarity=0.219 Sum_probs=55.0
Q ss_pred cchhhhhhhhcC-CCCccEEEEcCCCCHHHHHHHHHHhhCCC---Cccc---cCCcc----ccccccceeecCccccce-
Q psy17703 331 FTDKQLVRLQET-PAEINILLCGDPGTSKSQLLSYVYDLVPR---SQYT---SGKGS----SAVGLTAYITKDPETRQM- 398 (720)
Q Consensus 331 ~~d~Q~iklQE~-pg~i~vLL~G~PGtGKS~ll~~va~~~pr---~~~~---~g~~s----s~~glta~~~~~~~~~~~- 398 (720)
+.+.|.--+... .++--.++.|.+|||||++++.+.+.... .+.. +|+-. ...|..+..+ ..|
T Consensus 382 Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TI-----as~l 456 (1102)
T PRK13826 382 LSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTL-----SSWE 456 (1102)
T ss_pred CCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeH-----HHHH
Confidence 444555333322 23456899999999999999999875421 1111 01000 0011111000 011
Q ss_pred -eeecceeeecCCceeeccccccCChHHHHHHHHHHH
Q psy17703 399 -VLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVME 434 (720)
Q Consensus 399 -~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE 434 (720)
....|.-.+..+.+++|||..-++......|+...+
T Consensus 457 l~~~~~~~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~ 493 (1102)
T PRK13826 457 LRWNQGRDQLDNKTVFVLDEAGMVASRQMALFVEAVT 493 (1102)
T ss_pred hhhccCccCCCCCcEEEEECcccCCHHHHHHHHHHHH
Confidence 112334445556799999999888887777777765
No 466
>PRK13975 thymidylate kinase; Provisional
Probab=88.43 E-value=0.36 Score=47.90 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=22.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-|.+.|++|+|||++++.+++.+.
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999875
No 467
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=88.42 E-value=0.35 Score=50.95 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
.|+++.|+||+|||+|++.++..++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 59999999999999999999987754
No 468
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=88.37 E-value=0.88 Score=47.83 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-.+++.|++|+|||++++++...++
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhC
Confidence 4699999999999999998876664
No 469
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=88.36 E-value=0.35 Score=46.31 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=18.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHH
Q psy17703 346 INILLCGDPGTSKSQLLSYVY 366 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va 366 (720)
++|+++|+||+|||+|+..+.
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~ 21 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFT 21 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHh
Confidence 368999999999999996664
No 470
>PRK08356 hypothetical protein; Provisional
Probab=88.29 E-value=0.36 Score=48.19 Aligned_cols=22 Identities=9% Similarity=0.256 Sum_probs=19.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..|+|+|+||+|||++++++.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999964
No 471
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=88.20 E-value=0.36 Score=46.11 Aligned_cols=22 Identities=45% Similarity=0.631 Sum_probs=19.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.+|+++|+||+|||+|++.+..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~ 25 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTR 25 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999998864
No 472
>KOG1970|consensus
Probab=88.19 E-value=0.73 Score=52.24 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=24.8
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRS 372 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~ 372 (720)
+.--+||+||+|+|||+.++.+++.+...
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~ 137 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQ 137 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCce
Confidence 55568999999999999999999987543
No 473
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=88.16 E-value=0.46 Score=47.28 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.8
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~p 370 (720)
|.+.|.||+|||++++.+++.++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 57889999999999999999874
No 474
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=88.14 E-value=0.42 Score=48.27 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=21.4
Q ss_pred CCccEEEEcCCCCHHHHHH-HHHHhhC
Q psy17703 344 AEINILLCGDPGTSKSQLL-SYVYDLV 369 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll-~~va~~~ 369 (720)
..+.+.++|++|+|||+|+ +++....
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~ 34 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEF 34 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCC
Confidence 5689999999999999999 5665443
No 475
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=88.13 E-value=0.36 Score=46.24 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=19.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~ 367 (720)
+|.++|+||+|||+|++.+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~ 22 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISN 22 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999975
No 476
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=88.13 E-value=0.37 Score=43.33 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=18.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHH
Q psy17703 346 INILLCGDPGTSKSQLLSYVY 366 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va 366 (720)
--+.|.||+|+|||+|++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457899999999999999875
No 477
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.06 E-value=0.39 Score=48.40 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.+.|+|+.|+|||+|++.++.+.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999987664
No 478
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=88.06 E-value=0.38 Score=45.65 Aligned_cols=22 Identities=18% Similarity=0.449 Sum_probs=19.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
+.|+++|++|+|||+|++.+..
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~ 22 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVK 22 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999998864
No 479
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.05 E-value=0.38 Score=49.30 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+-.+.|+|+.|+|||+|++.++...+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34688999999999999999997765
No 480
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=88.05 E-value=0.39 Score=48.14 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-.+.|+|++|+|||+|++.++...+
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4588999999999999999987654
No 481
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=88.03 E-value=0.39 Score=45.58 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
++|+++|+||+|||+|+..+..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~ 24 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQ 24 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHh
Confidence 6899999999999999987754
No 482
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.99 E-value=0.39 Score=48.36 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-.+.|+|+.|+|||+|++.++...+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4588999999999999999987654
No 483
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=87.96 E-value=0.41 Score=45.93 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.3
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..|+++|++|+|||+|++.+..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~ 23 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK 23 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999987754
No 484
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=87.91 E-value=0.39 Score=48.38 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.1
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-.+.|.|+.|+|||+|++.++...+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4588999999999999999997664
No 485
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=87.89 E-value=0.41 Score=46.31 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=23.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
+-.+.|.|+.|+|||+|++.++...+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 347889999999999999999987753
No 486
>PF01057 Parvo_NS1: Parvovirus non-structural protein NS1; InterPro: IPR001257 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents the helicase domain of the Parvovirus NS1 protein; which is required for viral DNA replication []. This domain contains the ATP/GTP-binding site motif A (P-loop). Parvoviral NS1 also regulates host gene expression through histone acetylation []. ; GO: 0019079 viral genome replication; PDB: 3P0S_A 1S9H_A 1U0J_A.
Probab=87.86 E-value=0.46 Score=50.05 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=55.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHHH
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTR 426 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~ 426 (720)
-++|+|||+||||.|+.+|+..+|..-..... + ..+.+.. ..+..++.-||- .|..+..
T Consensus 115 ti~~~Gp~~tGKt~la~aI~~~~~~~G~vn~~-------------n---~nF~f~d----~~~k~l~~weE~-~~~~~~v 173 (271)
T PF01057_consen 115 TIWFYGPASTGKTNLADAIANAVPNYGCVNWN-------------N---NNFPFQD----CFNKRLIWWEEP-NMYPDEV 173 (271)
T ss_dssp EEEEESTTTSSHCHCHHCCCHHSCCEEEEECT-------------T---TCCCCCC----CCCECEEECTCG-GCCTTCH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCcccEeccC-------------C---CCCChhh----hhhccEEEeccc-CccHHHH
Confidence 68999999999999999999887642111000 0 1111110 112345667776 5666667
Q ss_pred HHHHHHHHhceEeeecc-CeEEeecCceEEEecccCC
Q psy17703 427 SILHEVMEQQTLSIAKA-GIICQLNARTSILAAANPC 462 (720)
Q Consensus 427 ~~L~e~mE~~~vsi~k~-g~~~~l~a~~~iiaaaNp~ 462 (720)
+.+..++.-..+.+... .....+ .++=+|-++|-.
T Consensus 174 e~~K~ilgG~~v~vd~K~k~~~~~-~~tPviItsn~d 209 (271)
T PF01057_consen 174 ETAKMILGGTPVRVDVKNKDSEEL-ERTPVIITSNND 209 (271)
T ss_dssp HHHHHCCTTSEEEEEETTTEEEEE-EEEEEEEEECCE
T ss_pred HHHHHHhCCCceEeecccCCceEe-cCCceEEEeccc
Confidence 77777777777777533 333444 345455566643
No 487
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=87.80 E-value=0.41 Score=45.32 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~ 367 (720)
.|.++|+||+|||+|++.+..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999988874
No 488
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=87.76 E-value=0.38 Score=50.45 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=19.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
+.-+|+.|+||+|||+|+..++.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~ 58 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAV 58 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999887654
No 489
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=87.73 E-value=0.41 Score=48.26 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.4
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+-.+.|+|+.|+|||+|++.++...+
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34688999999999999999987654
No 490
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=87.70 E-value=0.4 Score=45.45 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~ 367 (720)
.|+|+|+.|+|||+|++++..
T Consensus 3 rimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999965
No 491
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=87.67 E-value=0.42 Score=45.36 Aligned_cols=22 Identities=50% Similarity=0.694 Sum_probs=19.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
+.++++|+||+|||+|+..+..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~ 22 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTD 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999988864
No 492
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=87.66 E-value=0.38 Score=44.77 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=18.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~ 367 (720)
.|.++|+||+|||+|+..+..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~ 22 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQG 22 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998764
No 493
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=87.65 E-value=0.41 Score=46.09 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=21.0
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
-|+|.|-||+|||+|++++.+.+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999866
No 494
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=87.63 E-value=0.34 Score=38.05 Aligned_cols=42 Identities=19% Similarity=0.425 Sum_probs=29.6
Q ss_pred ecccc-hhhhhheeecccCCceeeeeecc-CcccCCccCCCCCC
Q psy17703 277 TSNII-PEMREAFFRCIVCNYSTTVEIDR-GRIHEPTLCTNCST 318 (720)
Q Consensus 277 ~s~v~-p~~~~~~f~C~~Cg~~~~~~~~~-~~~~~p~~C~~C~~ 318 (720)
...+. |.-+-..|.|++||.+....-.. .+...|..||+|+=
T Consensus 15 Cg~~i~p~e~~v~F~CPnCGe~~I~Rc~~CRk~g~~Y~Cp~CGF 58 (61)
T COG2888 15 CGREIAPGETAVKFPCPNCGEVEIYRCAKCRKLGNPYRCPKCGF 58 (61)
T ss_pred CCCEeccCCceeEeeCCCCCceeeehhhhHHHcCCceECCCcCc
Confidence 33344 66667789999999776544332 46778999999984
No 495
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=87.61 E-value=0.44 Score=46.74 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+-.+.|.|++|+|||+|++.++...+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 34688999999999999999987654
No 496
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=87.57 E-value=0.41 Score=49.33 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-.+.|+||.|+|||+|++.++...+
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4588999999999999999987654
No 497
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.54 E-value=0.45 Score=46.33 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+-.+.|.||+|+|||+|++.++...+
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34678999999999999999998765
No 498
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=87.54 E-value=0.46 Score=46.33 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-.+.|+|+.|+|||+|++.++...+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC
Confidence 4678999999999999999997765
No 499
>PRK13808 adenylate kinase; Provisional
Probab=87.53 E-value=0.49 Score=51.24 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+|+|+||||+|||++++.+++...
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~yg 25 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYG 25 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988654
No 500
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=87.51 E-value=0.39 Score=59.23 Aligned_cols=84 Identities=18% Similarity=0.140 Sum_probs=44.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC---CccccCC-cccc------ccccceeecCccccceeeecceeeecCCceeecc
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR---SQYTSGK-GSSA------VGLTAYITKDPETRQMVLQTGALVLADSGVCCID 416 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr---~~~~~g~-~ss~------~glta~~~~~~~~~~~~~~~G~l~lad~gI~~ID 416 (720)
.+++.|.||||||++++.+...... .+..... +..+ .|..+..+.. ... ....|...+....+++||
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~s-ll~--~~~~~~~~l~~~~vlIVD 440 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIAS-LEH--GWGQGRDLLTSRDVLVID 440 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHH-HHh--hhcccccccccCcEEEEE
Confidence 4679999999999999887765421 1111000 0000 0110000000 000 011233334566799999
Q ss_pred ccccCChHHHHHHHHHH
Q psy17703 417 EFDKMSDTTRSILHEVM 433 (720)
Q Consensus 417 Eidkm~~~~~~~L~e~m 433 (720)
|+.-++......|+...
T Consensus 441 EASMv~~~~m~~LL~~a 457 (988)
T PRK13889 441 EAGMVGTRQLERVLSHA 457 (988)
T ss_pred CcccCCHHHHHHHHHhh
Confidence 99988887666665543
Done!