Query psy17703
Match_columns 720
No_of_seqs 541 out of 3467
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 20:52:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f8t_A Predicted ATPase involv 100.0 5.2E-70 1.8E-74 595.6 29.3 363 1-612 128-504 (506)
2 3f9v_A Minichromosome maintena 100.0 7.5E-68 2.6E-72 611.7 26.1 423 176-599 22-595 (595)
3 2vl6_A SSO MCM N-TER, minichro 100.0 1.6E-29 5.5E-34 263.8 12.5 170 177-346 29-204 (268)
4 1ltl_A DNA replication initiat 100.0 5E-29 1.7E-33 261.2 12.9 170 171-346 17-191 (279)
5 2r44_A Uncharacterized protein 99.9 2.8E-21 9.5E-26 207.5 23.2 233 346-591 47-297 (331)
6 1g8p_A Magnesium-chelatase 38 99.9 7.2E-22 2.5E-26 213.0 18.6 226 345-591 45-322 (350)
7 3f9v_A Minichromosome maintena 99.9 1.7E-22 6E-27 233.1 8.4 145 1-158 198-342 (595)
8 3nbx_X ATPase RAVA; AAA+ ATPas 99.9 1.1E-20 3.7E-25 212.9 22.1 221 346-587 42-282 (500)
9 3k1j_A LON protease, ATP-depen 99.8 1.5E-18 5.1E-23 201.3 13.7 165 400-590 192-374 (604)
10 1ltl_A DNA replication initiat 99.7 1.1E-17 3.8E-22 175.1 6.9 89 1-102 191-279 (279)
11 3pfi_A Holliday junction ATP-d 99.6 1.1E-14 3.7E-19 156.3 15.4 193 345-590 55-253 (338)
12 1ofh_A ATP-dependent HSL prote 99.6 6.6E-15 2.2E-19 155.4 12.0 226 345-589 50-297 (310)
13 1ojl_A Transcriptional regulat 99.6 4.1E-15 1.4E-19 157.8 10.3 213 344-587 24-248 (304)
14 2bjv_A PSP operon transcriptio 99.5 1.1E-14 3.8E-19 151.0 11.3 211 344-584 28-250 (265)
15 1um8_A ATP-dependent CLP prote 99.5 1.2E-14 4.1E-19 158.7 10.4 233 344-587 71-361 (376)
16 1hqc_A RUVB; extended AAA-ATPa 99.5 4.3E-13 1.5E-17 142.7 17.0 193 344-590 37-237 (324)
17 3hws_A ATP-dependent CLP prote 99.5 2.1E-14 7.1E-19 156.1 4.9 213 344-567 50-318 (363)
18 4fcw_A Chaperone protein CLPB; 99.4 7.2E-13 2.5E-17 140.1 13.8 205 346-567 48-274 (311)
19 1ny5_A Transcriptional regulat 99.4 4.3E-13 1.5E-17 147.0 11.1 214 343-587 158-383 (387)
20 3m6a_A ATP-dependent protease 99.4 2.5E-13 8.4E-18 155.3 8.3 211 345-589 108-339 (543)
21 3syl_A Protein CBBX; photosynt 99.4 7.5E-13 2.6E-17 139.9 11.4 201 344-585 66-280 (309)
22 3uk6_A RUVB-like 2; hexameric 99.4 7.9E-12 2.7E-16 135.4 18.1 140 410-590 190-329 (368)
23 3h4m_A Proteasome-activating n 99.4 7.1E-13 2.4E-17 138.6 9.0 197 344-593 50-260 (285)
24 4b4t_J 26S protease regulatory 99.4 1.7E-12 5.6E-17 141.2 11.5 187 346-591 183-389 (405)
25 2vl6_A SSO MCM N-TER, minichro 99.4 8.9E-13 3E-17 137.2 9.0 63 1-65 204-266 (268)
26 3pxi_A Negative regulator of g 99.4 6E-13 2E-17 158.4 8.5 195 347-565 523-718 (758)
27 3dzd_A Transcriptional regulat 99.4 1.5E-12 5.1E-17 141.7 10.6 200 344-570 151-360 (368)
28 3pvs_A Replication-associated 99.3 1.3E-12 4.6E-17 145.5 9.0 187 346-589 51-242 (447)
29 1r6b_X CLPA protein; AAA+, N-t 99.3 2.6E-12 8.7E-17 152.9 11.9 185 347-540 490-694 (758)
30 4b4t_I 26S protease regulatory 99.3 4.1E-12 1.4E-16 138.6 11.7 189 345-592 216-424 (437)
31 1in4_A RUVB, holliday junction 99.3 3.3E-11 1.1E-15 129.4 17.0 192 346-590 52-249 (334)
32 4b4t_M 26S protease regulatory 99.3 3.9E-12 1.3E-16 140.2 9.3 187 345-589 215-420 (434)
33 4b4t_L 26S protease subunit RP 99.3 1.4E-11 4.8E-16 135.9 13.3 187 346-591 216-422 (437)
34 3vfd_A Spastin; ATPase, microt 99.3 2.2E-11 7.4E-16 133.5 14.6 188 345-589 148-363 (389)
35 4b4t_H 26S protease regulatory 99.3 6.5E-12 2.2E-16 138.3 10.2 188 345-591 243-450 (467)
36 2c9o_A RUVB-like 1; hexameric 99.3 5.4E-11 1.9E-15 133.1 17.5 141 411-591 297-437 (456)
37 1r6b_X CLPA protein; AAA+, N-t 99.3 1.9E-10 6.4E-15 136.9 22.6 55 658-714 554-608 (758)
38 1lv7_A FTSH; alpha/beta domain 99.3 3.1E-11 1.1E-15 124.2 13.5 186 345-591 45-252 (257)
39 4b4t_K 26S protease regulatory 99.3 1.3E-11 4.4E-16 136.0 11.1 186 346-589 207-412 (428)
40 3eie_A Vacuolar protein sortin 99.3 1.3E-11 4.6E-16 131.7 10.8 171 345-571 51-235 (322)
41 2chg_A Replication factor C sm 99.2 3.2E-11 1.1E-15 119.6 12.7 181 346-589 39-224 (226)
42 2qp9_X Vacuolar protein sortin 99.2 3.4E-11 1.2E-15 130.4 13.1 172 345-572 84-269 (355)
43 3d8b_A Fidgetin-like protein 1 99.2 4.8E-11 1.6E-15 129.3 14.0 189 345-590 117-333 (357)
44 1xwi_A SKD1 protein; VPS4B, AA 99.2 2.8E-11 9.7E-16 129.2 11.7 172 345-570 45-229 (322)
45 2qz4_A Paraplegin; AAA+, SPG7, 99.2 1.7E-11 5.8E-16 126.1 9.3 195 345-593 39-251 (262)
46 3b9p_A CG5977-PA, isoform A; A 99.2 8.4E-11 2.9E-15 123.6 14.0 193 345-589 54-270 (297)
47 3co5_A Putative two-component 99.2 4.7E-12 1.6E-16 118.9 2.4 114 344-493 26-140 (143)
48 3n70_A Transport activator; si 99.2 1.1E-11 3.7E-16 116.6 3.9 114 343-487 22-135 (145)
49 2zan_A Vacuolar protein sortin 99.1 7.7E-11 2.7E-15 131.4 10.5 173 345-569 167-350 (444)
50 1sxj_D Activator 1 41 kDa subu 99.1 4.9E-10 1.7E-14 120.2 15.2 188 346-589 59-261 (353)
51 3hu3_A Transitional endoplasmi 99.1 8.4E-11 2.9E-15 132.3 9.4 192 344-594 237-462 (489)
52 3bos_A Putative DNA replicatio 99.1 5.6E-10 1.9E-14 112.5 14.5 187 344-589 51-241 (242)
53 1g41_A Heat shock protein HSLU 99.1 4.8E-10 1.6E-14 123.8 14.9 117 409-543 250-384 (444)
54 3pxi_A Negative regulator of g 99.1 3.1E-10 1.1E-14 135.0 14.3 166 343-539 199-381 (758)
55 1qvr_A CLPB protein; coiled co 99.1 1.8E-10 6.1E-15 138.7 10.9 204 346-566 589-814 (854)
56 4akg_A Glutathione S-transfera 99.1 1.5E-09 5E-14 141.8 18.6 235 344-598 1266-1536(2695)
57 1iqp_A RFCS; clamp loader, ext 99.1 3.1E-10 1E-14 120.3 9.9 181 346-588 47-231 (327)
58 2dhr_A FTSH; AAA+ protein, hex 99.0 6.1E-10 2.1E-14 125.2 12.1 182 347-590 66-270 (499)
59 2ce7_A Cell division protein F 99.0 7.3E-10 2.5E-14 123.9 12.3 183 346-590 50-255 (476)
60 2r62_A Cell division protease 99.0 4.4E-11 1.5E-15 123.8 2.1 184 346-589 45-251 (268)
61 1njg_A DNA polymerase III subu 99.0 4.7E-09 1.6E-13 105.0 16.7 186 346-588 46-248 (250)
62 3vkg_A Dynein heavy chain, cyt 99.0 8.8E-09 3E-13 135.2 22.9 232 344-597 1303-1573(3245)
63 3cf0_A Transitional endoplasmi 99.0 3.9E-10 1.3E-14 119.1 7.7 128 345-504 49-195 (301)
64 3t15_A Ribulose bisphosphate c 99.0 2.8E-10 9.5E-15 119.9 6.2 131 344-492 35-184 (293)
65 3u61_B DNA polymerase accessor 99.0 7.7E-10 2.6E-14 117.7 9.6 183 347-589 50-235 (324)
66 1qvr_A CLPB protein; coiled co 99.0 8.5E-09 2.9E-13 124.1 19.4 51 661-713 660-710 (854)
67 1sxj_C Activator 1 40 kDa subu 99.0 8.2E-10 2.8E-14 118.6 8.9 149 347-539 48-200 (340)
68 2chq_A Replication factor C sm 99.0 1.3E-09 4.6E-14 114.9 10.1 181 346-588 39-223 (319)
69 2z4s_A Chromosomal replication 98.9 1.6E-09 5.4E-14 120.7 10.1 197 338-589 122-330 (440)
70 2v1u_A Cell division control p 98.9 1.4E-09 4.6E-14 117.9 9.2 142 412-592 133-277 (387)
71 1ixz_A ATP-dependent metallopr 98.9 1.2E-09 4E-14 112.2 7.9 181 347-588 51-253 (254)
72 1iy2_A ATP-dependent metallopr 98.9 2.2E-09 7.7E-14 111.8 8.5 188 347-588 75-277 (278)
73 1jr3_A DNA polymerase III subu 98.8 5.8E-08 2E-12 104.8 17.9 185 347-588 40-241 (373)
74 1d2n_A N-ethylmaleimide-sensit 98.8 7.5E-10 2.5E-14 114.9 2.4 173 344-568 63-246 (272)
75 4akg_A Glutathione S-transfera 98.8 3.2E-08 1.1E-12 129.3 17.8 191 344-574 644-843 (2695)
76 1sxj_B Activator 1 37 kDa subu 98.8 2.4E-08 8.4E-13 105.3 13.6 182 347-589 44-229 (323)
77 1sxj_E Activator 1 40 kDa subu 98.8 2.4E-07 8.1E-12 99.4 20.5 91 409-539 134-225 (354)
78 2qby_B CDC6 homolog 3, cell di 98.8 1.2E-08 4E-13 110.7 10.0 134 412-592 136-271 (384)
79 3pxg_A Negative regulator of g 98.8 3.2E-08 1.1E-12 111.0 13.6 186 344-576 200-390 (468)
80 1l8q_A Chromosomal replication 98.8 1.1E-08 3.6E-13 109.0 8.7 189 345-589 37-238 (324)
81 1fnn_A CDC6P, cell division co 98.8 3.5E-08 1.2E-12 106.9 12.8 210 347-590 46-273 (389)
82 2x8a_A Nuclear valosin-contain 98.7 3.4E-08 1.1E-12 102.9 9.6 124 348-505 47-188 (274)
83 3cf2_A TER ATPase, transitiona 98.7 7.8E-09 2.7E-13 121.9 4.5 129 346-507 512-660 (806)
84 3cf2_A TER ATPase, transitiona 98.7 1.1E-08 3.8E-13 120.6 5.4 131 346-508 239-385 (806)
85 3f8t_A Predicted ATPase involv 98.6 1.3E-08 4.6E-13 111.8 5.1 61 654-719 293-353 (506)
86 1jbk_A CLPB protein; beta barr 98.6 7.6E-09 2.6E-13 99.8 1.7 132 345-500 43-190 (195)
87 3te6_A Regulatory protein SIR3 98.6 4.6E-08 1.6E-12 103.6 6.9 74 411-505 134-208 (318)
88 1a5t_A Delta prime, HOLB; zinc 98.5 3.8E-07 1.3E-11 97.6 12.8 70 409-505 108-177 (334)
89 1sxj_A Activator 1 95 kDa subu 98.5 5.5E-07 1.9E-11 102.2 14.3 185 346-589 78-272 (516)
90 2p65_A Hypothetical protein PF 98.5 8.3E-09 2.8E-13 99.4 -2.5 128 344-495 42-186 (187)
91 2qby_A CDC6 homolog 1, cell di 98.4 7.2E-07 2.5E-11 96.1 11.9 205 345-592 45-273 (386)
92 1ypw_A Transitional endoplasmi 98.4 7.7E-09 2.6E-13 123.4 -4.1 131 345-507 511-660 (806)
93 2gno_A DNA polymerase III, gam 98.4 3E-07 1E-11 97.2 8.5 129 345-505 18-149 (305)
94 3vkg_A Dynein heavy chain, cyt 98.3 5.6E-06 1.9E-10 109.2 17.4 187 345-573 604-802 (3245)
95 1ypw_A Transitional endoplasmi 98.1 1.6E-06 5.5E-11 103.4 6.5 130 344-507 237-384 (806)
96 2kjq_A DNAA-related protein; s 98.1 3.2E-06 1.1E-10 79.6 5.4 105 345-487 36-140 (149)
97 1tue_A Replication protein E1; 98.0 1.8E-05 6.2E-10 77.9 8.9 122 341-493 54-177 (212)
98 1w5s_A Origin recognition comp 97.7 3.9E-05 1.3E-09 83.5 7.4 143 411-589 140-291 (412)
99 3ec2_A DNA replication protein 97.6 1.2E-05 4.2E-10 77.4 0.6 104 345-465 38-146 (180)
100 1u0j_A DNA replication protein 97.6 0.00021 7.3E-09 73.3 9.6 125 345-493 104-228 (267)
101 2qgz_A Helicase loader, putati 97.2 1.7E-05 5.7E-10 83.8 -4.1 26 345-370 152-177 (308)
102 2r2a_A Uncharacterized protein 97.1 0.00042 1.4E-08 68.2 5.3 61 410-495 88-153 (199)
103 2orw_A Thymidine kinase; TMTK, 96.8 0.0013 4.4E-08 63.8 6.2 26 410-435 77-102 (184)
104 1jr3_D DNA polymerase III, del 96.6 0.0035 1.2E-07 66.6 8.1 187 345-589 18-207 (343)
105 2r8r_A Sensor protein; KDPD, P 95.6 0.016 5.6E-07 57.8 6.4 26 344-369 5-30 (228)
106 2w58_A DNAI, primosome compone 95.4 0.0062 2.1E-07 59.2 2.7 25 346-370 55-79 (202)
107 3upu_A ATP-dependent DNA helic 94.9 0.022 7.5E-07 63.2 5.4 24 346-369 46-69 (459)
108 3e1s_A Exodeoxyribonuclease V, 94.7 0.012 4E-07 67.3 2.7 40 330-369 189-228 (574)
109 1g8p_A Magnesium-chelatase 38 94.6 0.029 9.8E-07 59.2 5.3 61 659-719 142-202 (350)
110 1qhx_A CPT, protein (chloramph 94.3 0.024 8.2E-07 53.6 3.4 26 346-371 4-29 (178)
111 1kag_A SKI, shikimate kinase I 94.1 0.026 8.8E-07 53.1 3.3 25 346-370 5-29 (173)
112 3trf_A Shikimate kinase, SK; a 93.6 0.034 1.2E-06 52.9 3.1 25 346-370 6-30 (185)
113 3kb2_A SPBC2 prophage-derived 93.5 0.033 1.1E-06 52.1 2.9 24 347-370 3-26 (173)
114 1via_A Shikimate kinase; struc 93.5 0.034 1.2E-06 52.6 2.8 24 347-370 6-29 (175)
115 1ly1_A Polynucleotide kinase; 93.4 0.037 1.3E-06 52.2 2.9 21 347-367 4-24 (181)
116 1ye8_A Protein THEP1, hypothet 93.3 0.035 1.2E-06 53.3 2.7 24 347-370 2-25 (178)
117 1zuh_A Shikimate kinase; alpha 93.1 0.044 1.5E-06 51.4 3.0 25 346-370 8-32 (168)
118 3vaa_A Shikimate kinase, SK; s 93.1 0.043 1.5E-06 53.3 3.0 25 346-370 26-50 (199)
119 3iij_A Coilin-interacting nucl 92.9 0.047 1.6E-06 51.8 2.9 26 345-370 11-36 (180)
120 1w36_D RECD, exodeoxyribonucle 92.9 0.058 2E-06 62.0 4.1 38 332-369 151-188 (608)
121 3dl0_A Adenylate kinase; phosp 92.8 0.059 2E-06 52.8 3.6 24 347-370 2-25 (216)
122 1zp6_A Hypothetical protein AT 92.8 0.047 1.6E-06 52.2 2.7 24 345-368 9-32 (191)
123 1y63_A LMAJ004144AAA protein; 92.7 0.065 2.2E-06 51.3 3.6 24 345-368 10-33 (184)
124 1nks_A Adenylate kinase; therm 92.5 0.053 1.8E-06 51.6 2.6 24 347-370 3-26 (194)
125 3tr0_A Guanylate kinase, GMP k 92.4 0.066 2.3E-06 51.7 3.2 24 347-370 9-32 (205)
126 2iyv_A Shikimate kinase, SK; t 92.3 0.065 2.2E-06 51.0 3.0 24 347-370 4-27 (184)
127 1kht_A Adenylate kinase; phosp 92.3 0.058 2E-06 51.3 2.7 25 346-370 4-28 (192)
128 3lw7_A Adenylate kinase relate 92.3 0.059 2E-06 50.2 2.6 23 347-370 3-25 (179)
129 1kgd_A CASK, peripheral plasma 92.3 0.072 2.5E-06 50.8 3.3 25 346-370 6-30 (180)
130 3fb4_A Adenylate kinase; psych 92.3 0.068 2.3E-06 52.3 3.2 24 347-370 2-25 (216)
131 2rhm_A Putative kinase; P-loop 92.2 0.06 2.1E-06 51.4 2.6 26 345-370 5-30 (193)
132 2qor_A Guanylate kinase; phosp 92.2 0.073 2.5E-06 51.8 3.2 26 345-370 12-37 (204)
133 1e6c_A Shikimate kinase; phosp 92.1 0.07 2.4E-06 50.0 2.9 24 347-370 4-27 (173)
134 3t61_A Gluconokinase; PSI-biol 92.1 0.065 2.2E-06 51.9 2.7 25 346-370 19-43 (202)
135 1knq_A Gluconate kinase; ALFA/ 92.0 0.067 2.3E-06 50.4 2.7 24 346-369 9-32 (175)
136 4eun_A Thermoresistant glucoki 92.0 0.065 2.2E-06 52.0 2.7 25 345-369 29-53 (200)
137 2bdt_A BH3686; alpha-beta prot 92.0 0.062 2.1E-06 51.4 2.4 22 347-368 4-25 (189)
138 3cm0_A Adenylate kinase; ATP-b 92.0 0.07 2.4E-06 50.7 2.8 25 346-370 5-29 (186)
139 2r44_A Uncharacterized protein 92.0 0.18 6.3E-06 52.8 6.3 51 663-715 111-161 (331)
140 2ze6_A Isopentenyl transferase 91.9 0.07 2.4E-06 54.1 2.8 25 347-371 3-27 (253)
141 2vli_A Antibiotic resistance p 91.9 0.067 2.3E-06 50.6 2.5 26 346-371 6-31 (183)
142 2gmg_A Hypothetical protein PF 91.9 0.079 2.7E-06 45.7 2.6 28 287-319 66-93 (105)
143 2b8t_A Thymidine kinase; deoxy 91.9 0.17 5.7E-06 50.4 5.5 23 346-368 13-35 (223)
144 1tev_A UMP-CMP kinase; ploop, 91.9 0.075 2.6E-06 50.6 2.8 25 346-370 4-28 (196)
145 2pt5_A Shikimate kinase, SK; a 91.7 0.085 2.9E-06 49.2 3.0 24 347-370 2-25 (168)
146 2cdn_A Adenylate kinase; phosp 91.7 0.083 2.9E-06 51.1 3.0 26 345-370 20-45 (201)
147 1aky_A Adenylate kinase; ATP:A 91.7 0.088 3E-06 51.8 3.2 26 345-370 4-29 (220)
148 2plr_A DTMP kinase, probable t 91.7 0.079 2.7E-06 51.3 2.8 25 346-370 5-29 (213)
149 3uie_A Adenylyl-sulfate kinase 91.7 0.076 2.6E-06 51.5 2.7 26 345-370 25-50 (200)
150 2j41_A Guanylate kinase; GMP, 91.5 0.089 3.1E-06 50.8 3.0 25 345-369 6-30 (207)
151 2jaq_A Deoxyguanosine kinase; 91.5 0.086 2.9E-06 50.7 2.8 24 347-370 2-25 (205)
152 2bwj_A Adenylate kinase 5; pho 91.5 0.084 2.9E-06 50.6 2.7 25 346-370 13-37 (199)
153 2c95_A Adenylate kinase 1; tra 91.5 0.085 2.9E-06 50.5 2.7 26 345-370 9-34 (196)
154 1gvn_B Zeta; postsegregational 91.4 0.089 3.1E-06 54.4 3.0 26 345-370 33-58 (287)
155 3tau_A Guanylate kinase, GMP k 91.4 0.095 3.2E-06 51.3 3.0 26 346-371 9-34 (208)
156 1zd8_A GTP:AMP phosphotransfer 91.3 0.1 3.4E-06 51.7 3.2 25 346-370 8-32 (227)
157 1zak_A Adenylate kinase; ATP:A 91.3 0.09 3.1E-06 51.8 2.8 26 345-370 5-30 (222)
158 2qt1_A Nicotinamide riboside k 91.3 0.11 3.8E-06 50.4 3.4 27 344-370 20-46 (207)
159 3sr0_A Adenylate kinase; phosp 91.3 0.096 3.3E-06 51.5 3.0 24 347-370 2-25 (206)
160 1qf9_A UMP/CMP kinase, protein 91.3 0.091 3.1E-06 49.9 2.8 25 346-370 7-31 (194)
161 1e4v_A Adenylate kinase; trans 90.9 0.11 3.7E-06 50.9 3.0 24 347-370 2-25 (214)
162 2p5t_B PEZT; postsegregational 90.9 0.086 2.9E-06 53.3 2.3 26 345-370 32-57 (253)
163 2bbw_A Adenylate kinase 4, AK4 90.9 0.087 3E-06 52.9 2.2 24 346-369 28-51 (246)
164 1ak2_A Adenylate kinase isoenz 90.9 0.1 3.4E-06 52.0 2.7 26 345-370 16-41 (233)
165 1ukz_A Uridylate kinase; trans 90.7 0.13 4.6E-06 49.6 3.3 25 346-370 16-40 (203)
166 3be4_A Adenylate kinase; malar 90.6 0.11 3.7E-06 51.2 2.6 25 346-370 6-30 (217)
167 1ex7_A Guanylate kinase; subst 90.5 0.16 5.6E-06 49.0 3.7 25 347-371 3-27 (186)
168 3a00_A Guanylate kinase, GMP k 90.4 0.13 4.5E-06 49.2 3.0 24 347-370 3-26 (186)
169 1cke_A CK, MSSA, protein (cyti 90.4 0.12 4E-06 50.9 2.7 25 346-370 6-30 (227)
170 3umf_A Adenylate kinase; rossm 90.4 0.13 4.3E-06 51.1 2.9 24 347-370 31-54 (217)
171 2vhj_A Ntpase P4, P4; non- hyd 90.4 0.13 4.4E-06 54.1 3.0 23 346-368 124-146 (331)
172 2xb4_A Adenylate kinase; ATP-b 90.3 0.13 4.4E-06 50.9 2.9 24 347-370 2-25 (223)
173 2yvu_A Probable adenylyl-sulfa 90.2 0.13 4.4E-06 49.1 2.7 26 345-370 13-38 (186)
174 2wwf_A Thymidilate kinase, put 90.2 0.12 4.2E-06 50.0 2.6 26 345-370 10-35 (212)
175 1znw_A Guanylate kinase, GMP k 90.2 0.18 6E-06 49.2 3.7 26 345-370 20-45 (207)
176 3tlx_A Adenylate kinase 2; str 90.1 0.099 3.4E-06 52.6 1.9 26 345-370 29-54 (243)
177 1z2a_A RAS-related protein RAB 90.1 0.14 4.9E-06 47.0 2.9 23 345-367 5-27 (168)
178 2v54_A DTMP kinase, thymidylat 90.1 0.16 5.5E-06 48.9 3.3 25 345-369 4-28 (204)
179 2if2_A Dephospho-COA kinase; a 90.0 0.14 4.8E-06 49.5 2.8 21 347-367 3-23 (204)
180 2pbr_A DTMP kinase, thymidylat 90.0 0.15 5E-06 48.6 2.9 23 347-369 2-24 (195)
181 3t1o_A Gliding protein MGLA; G 90.0 0.16 5.4E-06 48.1 3.1 26 345-370 14-39 (198)
182 3lxx_A GTPase IMAP family memb 90.0 0.52 1.8E-05 46.8 7.1 26 344-369 28-53 (239)
183 3a4m_A L-seryl-tRNA(SEC) kinas 90.0 0.14 4.8E-06 51.9 2.9 24 346-369 5-28 (260)
184 1kao_A RAP2A; GTP-binding prot 90.0 0.15 5.1E-06 46.6 2.8 23 345-367 3-25 (167)
185 1lvg_A Guanylate kinase, GMP k 89.9 0.15 5E-06 49.6 2.9 25 346-370 5-29 (198)
186 2erx_A GTP-binding protein DI- 89.8 0.14 4.8E-06 47.1 2.6 23 345-367 3-25 (172)
187 4a74_A DNA repair and recombin 89.8 0.17 5.9E-06 49.5 3.3 24 346-369 26-49 (231)
188 2gf0_A GTP-binding protein DI- 89.8 0.18 6.2E-06 48.0 3.3 24 344-367 7-30 (199)
189 1ek0_A Protein (GTP-binding pr 89.7 0.16 5.6E-06 46.6 2.9 23 345-367 3-25 (170)
190 1z0j_A RAB-22, RAS-related pro 89.7 0.27 9.2E-06 45.2 4.4 25 345-369 6-30 (170)
191 3q85_A GTP-binding protein REM 89.6 0.14 4.9E-06 47.2 2.4 22 346-367 3-24 (169)
192 1nn5_A Similar to deoxythymidy 89.6 0.15 5E-06 49.6 2.6 25 345-369 9-33 (215)
193 2nzj_A GTP-binding protein REM 89.6 0.15 5.2E-06 47.2 2.6 23 345-367 4-26 (175)
194 1htw_A HI0065; nucleotide-bind 89.6 0.19 6.5E-06 47.1 3.3 25 346-370 34-58 (158)
195 1r8s_A ADP-ribosylation factor 89.6 0.18 6.1E-06 46.3 3.0 22 346-367 1-22 (164)
196 2z0h_A DTMP kinase, thymidylat 89.6 0.15 5.3E-06 48.6 2.7 22 348-369 3-24 (197)
197 1g16_A RAS-related protein SEC 89.6 0.16 5.5E-06 46.7 2.8 23 345-367 3-25 (170)
198 1z08_A RAS-related protein RAB 89.6 0.16 5.6E-06 46.7 2.8 24 345-368 6-29 (170)
199 1jjv_A Dephospho-COA kinase; P 89.5 0.16 5.6E-06 49.1 2.9 21 347-367 4-24 (206)
200 1u8z_A RAS-related protein RAL 89.5 0.17 5.9E-06 46.3 2.9 23 345-367 4-26 (168)
201 3q72_A GTP-binding protein RAD 89.4 0.17 5.6E-06 46.6 2.7 22 345-366 2-23 (166)
202 3c8u_A Fructokinase; YP_612366 89.4 0.13 4.6E-06 50.1 2.1 27 344-370 21-47 (208)
203 3ney_A 55 kDa erythrocyte memb 89.3 0.2 6.8E-06 48.9 3.3 25 346-370 20-44 (197)
204 1wms_A RAB-9, RAB9, RAS-relate 89.3 0.18 6E-06 47.0 2.8 23 345-367 7-29 (177)
205 1c1y_A RAS-related protein RAP 89.3 0.18 6.1E-06 46.2 2.9 23 345-367 3-25 (167)
206 2w0m_A SSO2452; RECA, SSPF, un 89.3 0.16 5.6E-06 49.6 2.7 24 346-369 24-47 (235)
207 1z6g_A Guanylate kinase; struc 89.3 0.2 6.8E-06 49.4 3.3 25 346-370 24-48 (218)
208 2ce2_X GTPase HRAS; signaling 89.2 0.18 6.1E-06 46.0 2.8 24 345-368 3-26 (166)
209 1r2q_A RAS-related protein RAB 89.2 0.19 6.4E-06 46.2 2.9 23 345-367 6-28 (170)
210 2f9l_A RAB11B, member RAS onco 89.1 0.18 6.3E-06 48.3 2.9 24 346-369 6-29 (199)
211 4gp7_A Metallophosphoesterase; 89.1 0.16 5.4E-06 48.0 2.3 19 347-365 11-29 (171)
212 3bc1_A RAS-related protein RAB 89.1 0.19 6.4E-06 47.3 2.9 23 345-367 11-33 (195)
213 2hxs_A RAB-26, RAS-related pro 89.0 0.19 6.6E-06 46.7 2.9 23 345-367 6-28 (178)
214 2dyk_A GTP-binding protein; GT 89.0 0.2 6.8E-06 45.7 2.9 22 347-368 3-24 (161)
215 2cvh_A DNA repair and recombin 89.0 0.19 6.6E-06 48.8 3.0 22 346-367 21-42 (220)
216 2pez_A Bifunctional 3'-phospho 89.0 0.18 6.2E-06 47.7 2.7 24 346-369 6-29 (179)
217 2zej_A Dardarin, leucine-rich 89.0 0.16 5.5E-06 48.1 2.3 23 345-367 2-24 (184)
218 1nrj_B SR-beta, signal recogni 89.0 0.22 7.5E-06 48.4 3.3 26 344-369 11-36 (218)
219 3o47_A ADP-ribosylation factor 88.9 0.25 8.6E-06 52.0 4.0 21 346-366 166-186 (329)
220 2ehv_A Hypothetical protein PH 88.9 0.19 6.4E-06 49.9 2.8 22 346-367 31-52 (251)
221 3lxw_A GTPase IMAP family memb 88.8 0.66 2.3E-05 46.5 6.9 25 344-368 20-44 (247)
222 1n0w_A DNA repair protein RAD5 88.8 0.2 6.7E-06 49.6 2.9 23 346-368 25-47 (243)
223 1ky3_A GTP-binding protein YPT 88.8 0.2 6.9E-06 46.6 2.8 24 344-367 7-30 (182)
224 1z0f_A RAB14, member RAS oncog 88.8 0.2 7E-06 46.4 2.9 24 345-368 15-38 (179)
225 1s96_A Guanylate kinase, GMP k 88.7 0.23 7.9E-06 49.2 3.3 27 345-371 16-42 (219)
226 1upt_A ARL1, ADP-ribosylation 88.7 0.25 8.7E-06 45.5 3.4 24 344-367 6-29 (171)
227 3sop_A Neuronal-specific septi 88.5 0.17 5.9E-06 51.8 2.3 25 346-370 3-27 (270)
228 3asz_A Uridine kinase; cytidin 88.5 0.18 6.3E-06 48.9 2.4 25 346-370 7-31 (211)
229 2cxx_A Probable GTP-binding pr 88.5 0.21 7E-06 47.1 2.7 23 346-368 2-24 (190)
230 2oil_A CATX-8, RAS-related pro 88.4 0.22 7.5E-06 47.3 2.9 23 345-367 25-47 (193)
231 1mh1_A RAC1; GTP-binding, GTPa 88.4 0.2 6.7E-06 47.0 2.5 23 345-367 5-27 (186)
232 2wji_A Ferrous iron transport 88.4 0.21 7.2E-06 46.3 2.6 23 346-368 4-26 (165)
233 1m7g_A Adenylylsulfate kinase; 88.4 0.21 7.1E-06 48.8 2.7 26 345-370 25-50 (211)
234 2lkc_A Translation initiation 88.4 0.27 9.2E-06 45.7 3.4 24 344-367 7-30 (178)
235 2xtp_A GTPase IMAP family memb 88.3 0.79 2.7E-05 46.0 7.1 24 344-367 21-44 (260)
236 3vkw_A Replicase large subunit 88.3 0.13 4.3E-06 56.5 1.1 48 320-367 127-183 (446)
237 2ged_A SR-beta, signal recogni 88.3 0.26 9E-06 46.6 3.3 25 344-368 47-71 (193)
238 3clv_A RAB5 protein, putative; 88.3 0.27 9.3E-06 46.5 3.4 25 344-368 6-30 (208)
239 2y8e_A RAB-protein 6, GH09086P 88.3 0.23 7.7E-06 46.1 2.8 23 345-367 14-36 (179)
240 2fn4_A P23, RAS-related protei 88.2 0.23 7.8E-06 46.2 2.7 25 344-368 8-32 (181)
241 1ltq_A Polynucleotide kinase; 88.2 0.22 7.6E-06 51.3 2.9 23 347-369 4-26 (301)
242 3r20_A Cytidylate kinase; stru 88.2 0.17 5.8E-06 50.7 1.9 26 345-370 9-34 (233)
243 2g6b_A RAS-related protein RAB 88.2 0.24 8.1E-06 46.2 2.9 23 345-367 10-32 (180)
244 2efe_B Small GTP-binding prote 88.1 0.24 8.1E-06 46.2 2.8 23 345-367 12-34 (181)
245 4dsu_A GTPase KRAS, isoform 2B 88.1 0.24 8.1E-06 46.5 2.8 23 345-367 4-26 (189)
246 3cmw_A Protein RECA, recombina 88.1 0.29 1E-05 62.0 4.4 24 346-369 1083-1106(1706)
247 3kkq_A RAS-related protein M-R 88.0 0.24 8.3E-06 46.4 2.9 24 344-367 17-40 (183)
248 2gj8_A MNME, tRNA modification 88.0 0.24 8.3E-06 46.4 2.9 24 345-368 4-27 (172)
249 3crm_A TRNA delta(2)-isopenten 88.0 0.26 8.9E-06 51.8 3.3 24 347-370 7-30 (323)
250 3tw8_B RAS-related protein RAB 88.0 0.22 7.6E-06 46.3 2.6 23 345-367 9-31 (181)
251 1svi_A GTP-binding protein YSX 88.0 0.26 9E-06 46.7 3.1 24 344-367 22-45 (195)
252 2bov_A RAla, RAS-related prote 87.9 0.25 8.6E-06 47.2 3.0 24 344-367 13-36 (206)
253 1svm_A Large T antigen; AAA+ f 87.9 0.29 9.9E-06 52.7 3.7 26 344-369 168-193 (377)
254 1oix_A RAS-related protein RAB 87.9 0.35 1.2E-05 46.2 3.9 25 346-370 30-54 (191)
255 1m7b_A RND3/RHOE small GTP-bin 87.9 0.24 8.3E-06 46.7 2.8 23 345-367 7-29 (184)
256 3bwd_D RAC-like GTP-binding pr 87.9 0.28 9.6E-06 45.7 3.2 23 345-367 8-30 (182)
257 3nwj_A ATSK2; P loop, shikimat 87.9 0.24 8.3E-06 50.1 2.9 26 345-370 48-73 (250)
258 2bme_A RAB4A, RAS-related prot 87.8 0.25 8.4E-06 46.4 2.8 23 345-367 10-32 (186)
259 2iwr_A Centaurin gamma 1; ANK 87.8 0.21 7.1E-06 46.6 2.2 23 345-367 7-29 (178)
260 2ga8_A Hypothetical 39.9 kDa p 87.7 0.23 7.9E-06 52.9 2.7 25 346-370 25-49 (359)
261 3ake_A Cytidylate kinase; CMP 87.7 0.25 8.7E-06 47.5 2.8 24 347-370 4-27 (208)
262 4e22_A Cytidylate kinase; P-lo 87.7 0.21 7.2E-06 50.4 2.3 26 345-370 27-52 (252)
263 1uf9_A TT1252 protein; P-loop, 87.6 0.26 8.8E-06 47.3 2.8 24 345-368 8-31 (203)
264 2onk_A Molybdate/tungstate ABC 87.6 0.28 9.6E-06 49.3 3.2 24 347-370 26-49 (240)
265 2atv_A RERG, RAS-like estrogen 87.6 0.27 9.3E-06 46.9 3.0 24 344-367 27-50 (196)
266 2pcj_A ABC transporter, lipopr 87.6 0.23 8E-06 49.3 2.5 24 347-370 32-55 (224)
267 2a9k_A RAS-related protein RAL 87.6 0.27 9.2E-06 46.0 2.9 23 345-367 18-40 (187)
268 3lnc_A Guanylate kinase, GMP k 87.6 0.2 6.8E-06 49.6 2.0 25 347-371 29-54 (231)
269 2i3b_A HCR-ntpase, human cance 87.5 0.26 8.8E-06 47.6 2.7 23 347-369 3-25 (189)
270 3con_A GTPase NRAS; structural 87.4 0.27 9.4E-06 46.4 2.9 23 345-367 21-43 (190)
271 2gf9_A RAS-related protein RAB 87.4 0.27 9.4E-06 46.5 2.9 23 345-367 22-44 (189)
272 1vg8_A RAS-related protein RAB 87.4 0.51 1.7E-05 45.1 4.8 24 345-368 8-31 (207)
273 3c5c_A RAS-like protein 12; GD 87.4 0.27 9.4E-06 46.6 2.8 23 345-367 21-43 (187)
274 3nbx_X ATPase RAVA; AAA+ ATPas 87.4 0.58 2E-05 52.2 5.9 52 662-716 110-161 (500)
275 2wjg_A FEOB, ferrous iron tran 87.4 0.27 9.4E-06 46.2 2.8 23 345-367 7-29 (188)
276 3tkl_A RAS-related protein RAB 87.3 0.39 1.3E-05 45.5 3.8 23 345-367 16-38 (196)
277 3ihw_A Centg3; RAS, centaurin, 87.3 0.28 9.6E-06 46.5 2.8 24 344-367 19-42 (184)
278 1uj2_A Uridine-cytidine kinase 87.3 0.31 1.1E-05 49.0 3.3 26 345-370 22-47 (252)
279 3reg_A RHO-like small GTPase; 87.2 0.29 9.8E-06 46.6 2.9 24 344-367 22-45 (194)
280 1zbd_A Rabphilin-3A; G protein 87.2 0.28 9.6E-06 46.9 2.8 23 345-367 8-30 (203)
281 1zd9_A ADP-ribosylation factor 87.2 0.29 1E-05 46.4 2.9 23 345-367 22-44 (188)
282 1gtv_A TMK, thymidylate kinase 87.1 0.16 5.4E-06 49.3 1.0 24 347-370 2-25 (214)
283 3t5g_A GTP-binding protein RHE 87.1 0.28 9.6E-06 45.9 2.7 23 345-367 6-28 (181)
284 1z06_A RAS-related protein RAB 87.1 0.29 1E-05 46.3 2.8 23 345-367 20-42 (189)
285 3tif_A Uncharacterized ABC tra 87.1 0.27 9.3E-06 49.2 2.7 24 347-370 33-56 (235)
286 2dr3_A UPF0273 protein PH0284; 87.1 0.28 9.4E-06 48.6 2.7 22 346-367 24-45 (247)
287 3dz8_A RAS-related protein RAB 87.1 0.29 9.9E-06 46.5 2.8 24 345-368 23-46 (191)
288 2fg5_A RAB-22B, RAS-related pr 87.0 0.53 1.8E-05 44.7 4.7 24 345-368 23-46 (192)
289 1x3s_A RAS-related protein RAB 87.0 0.3 1E-05 46.1 2.9 24 345-368 15-38 (195)
290 2v9p_A Replication protein E1; 87.0 0.3 1E-05 50.9 3.1 25 345-369 126-150 (305)
291 2bcg_Y Protein YP2, GTP-bindin 87.0 0.29 1E-05 47.0 2.8 23 345-367 8-30 (206)
292 1ksh_A ARF-like protein 2; sma 86.9 0.28 9.7E-06 46.1 2.6 24 344-367 17-40 (186)
293 2a5j_A RAS-related protein RAB 86.9 0.31 1.1E-05 46.3 2.9 23 345-367 21-43 (191)
294 3oes_A GTPase rhebl1; small GT 86.8 0.3 1E-05 46.8 2.8 24 344-367 23-46 (201)
295 3pqc_A Probable GTP-binding pr 86.8 0.33 1.1E-05 45.7 3.0 25 344-368 22-46 (195)
296 1m2o_B GTP-binding protein SAR 86.7 0.33 1.1E-05 46.3 3.0 23 345-367 23-45 (190)
297 2p5s_A RAS and EF-hand domain 86.6 0.32 1.1E-05 46.5 2.9 25 344-368 27-51 (199)
298 1zj6_A ADP-ribosylation factor 86.6 0.33 1.1E-05 45.9 2.9 24 344-367 15-38 (187)
299 2h17_A ADP-ribosylation factor 86.6 0.29 9.9E-06 46.0 2.5 24 344-367 20-43 (181)
300 1cr0_A DNA primase/helicase; R 86.6 0.29 9.8E-06 50.4 2.6 23 347-369 37-59 (296)
301 3llu_A RAS-related GTP-binding 86.5 0.34 1.1E-05 46.3 2.9 24 344-367 19-42 (196)
302 1sgw_A Putative ABC transporte 86.5 0.31 1E-05 48.1 2.6 24 347-370 37-60 (214)
303 2oap_1 GSPE-2, type II secreti 86.5 0.32 1.1E-05 54.6 3.1 27 345-371 260-286 (511)
304 2qmh_A HPR kinase/phosphorylas 86.4 0.31 1E-05 47.6 2.5 27 344-370 33-59 (205)
305 2zts_A Putative uncharacterize 86.4 0.33 1.1E-05 48.1 2.8 21 346-366 31-51 (251)
306 4eaq_A DTMP kinase, thymidylat 86.3 0.32 1.1E-05 48.4 2.8 27 344-370 25-51 (229)
307 2eyu_A Twitching motility prot 86.3 0.35 1.2E-05 49.3 3.0 26 345-370 25-50 (261)
308 3a8t_A Adenylate isopentenyltr 86.3 0.36 1.2E-05 51.0 3.2 26 346-371 41-66 (339)
309 1moz_A ARL1, ADP-ribosylation 86.2 0.25 8.4E-06 46.3 1.7 23 344-366 17-39 (183)
310 1g6h_A High-affinity branched- 86.2 0.32 1.1E-05 49.4 2.7 24 347-370 35-58 (257)
311 2cjw_A GTP-binding protein GEM 86.2 0.35 1.2E-05 46.2 2.9 23 345-367 6-28 (192)
312 2fu5_C RAS-related protein RAB 86.2 0.22 7.7E-06 46.6 1.4 23 345-367 8-30 (183)
313 1b0u_A Histidine permease; ABC 86.1 0.32 1.1E-05 49.5 2.6 24 347-370 34-57 (262)
314 3cph_A RAS-related protein SEC 86.1 0.35 1.2E-05 46.5 2.9 24 344-367 19-42 (213)
315 2q3h_A RAS homolog gene family 86.0 0.35 1.2E-05 46.1 2.8 24 344-367 19-42 (201)
316 2o52_A RAS-related protein RAB 86.0 0.33 1.1E-05 46.6 2.6 23 345-367 25-47 (200)
317 2ff7_A Alpha-hemolysin translo 86.0 0.33 1.1E-05 48.9 2.7 24 347-370 37-60 (247)
318 1fzq_A ADP-ribosylation factor 86.0 0.36 1.2E-05 45.5 2.8 24 344-367 15-38 (181)
319 2pt7_A CAG-ALFA; ATPase, prote 86.0 0.32 1.1E-05 51.3 2.6 27 345-371 171-197 (330)
320 2j1l_A RHO-related GTP-binding 85.9 0.31 1E-05 47.5 2.3 24 344-367 33-56 (214)
321 1gwn_A RHO-related GTP-binding 85.9 0.35 1.2E-05 46.8 2.8 23 345-367 28-50 (205)
322 2ew1_A RAS-related protein RAB 85.9 0.36 1.2E-05 46.7 2.8 23 345-367 26-48 (201)
323 2fna_A Conserved hypothetical 85.9 0.35 1.2E-05 50.5 2.9 24 346-369 31-54 (357)
324 2f7s_A C25KG, RAS-related prot 85.8 0.34 1.2E-05 46.9 2.6 23 345-367 25-47 (217)
325 1mv5_A LMRA, multidrug resista 85.8 0.34 1.2E-05 48.7 2.6 25 346-370 29-53 (243)
326 2il1_A RAB12; G-protein, GDP, 85.8 0.35 1.2E-05 46.0 2.6 23 345-367 26-48 (192)
327 1rz3_A Hypothetical protein rb 85.8 0.35 1.2E-05 46.8 2.6 26 345-370 22-47 (201)
328 1vht_A Dephospho-COA kinase; s 85.8 0.38 1.3E-05 47.0 2.9 22 346-367 5-26 (218)
329 2qen_A Walker-type ATPase; unk 85.7 0.39 1.3E-05 50.0 3.2 25 346-370 32-56 (350)
330 2pze_A Cystic fibrosis transme 85.7 0.35 1.2E-05 48.1 2.6 24 347-370 36-59 (229)
331 1nlf_A Regulatory protein REPA 85.7 0.36 1.2E-05 49.3 2.8 25 345-369 30-54 (279)
332 2gza_A Type IV secretion syste 85.7 0.39 1.4E-05 51.3 3.2 27 345-371 175-201 (361)
333 1ji0_A ABC transporter; ATP bi 85.7 0.35 1.2E-05 48.5 2.7 24 347-370 34-57 (240)
334 3q3j_B RHO-related GTP-binding 85.6 0.4 1.4E-05 46.7 3.0 24 344-367 26-49 (214)
335 3gfo_A Cobalt import ATP-bindi 85.6 0.35 1.2E-05 49.6 2.6 24 347-370 36-59 (275)
336 2olj_A Amino acid ABC transpor 85.6 0.36 1.2E-05 49.3 2.6 24 347-370 52-75 (263)
337 2cbz_A Multidrug resistance-as 85.5 0.26 8.9E-06 49.4 1.6 25 346-370 32-56 (237)
338 2b6h_A ADP-ribosylation factor 85.5 0.37 1.3E-05 45.9 2.7 23 344-366 28-50 (192)
339 2qi9_C Vitamin B12 import ATP- 85.5 0.36 1.2E-05 48.8 2.6 24 347-370 28-51 (249)
340 3kta_A Chromosome segregation 85.5 0.47 1.6E-05 44.8 3.3 24 347-370 28-51 (182)
341 2fh5_B SR-beta, signal recogni 85.4 0.42 1.5E-05 46.1 3.0 25 344-368 6-30 (214)
342 3jvv_A Twitching mobility prot 85.4 0.3 1E-05 52.1 2.1 27 343-370 122-148 (356)
343 2atx_A Small GTP binding prote 85.3 0.4 1.4E-05 45.5 2.7 24 345-368 18-41 (194)
344 4gzl_A RAS-related C3 botulinu 85.2 0.42 1.4E-05 46.1 2.9 24 344-367 29-52 (204)
345 2ixe_A Antigen peptide transpo 85.2 0.38 1.3E-05 49.2 2.7 24 347-370 47-70 (271)
346 3hr8_A Protein RECA; alpha and 85.2 0.36 1.2E-05 51.5 2.6 24 346-369 62-85 (356)
347 1pzn_A RAD51, DNA repair and r 85.2 0.42 1.4E-05 50.8 3.1 25 345-369 131-155 (349)
348 3cbq_A GTP-binding protein REM 85.1 0.33 1.1E-05 46.5 2.1 22 345-366 23-44 (195)
349 1vpl_A ABC transporter, ATP-bi 85.1 0.38 1.3E-05 48.8 2.6 24 347-370 43-66 (256)
350 2gco_A H9, RHO-related GTP-bin 85.1 0.41 1.4E-05 45.9 2.8 23 345-367 25-47 (201)
351 2j0v_A RAC-like GTP-binding pr 85.1 0.41 1.4E-05 46.2 2.8 23 345-367 9-31 (212)
352 1lw7_A Transcriptional regulat 85.1 0.52 1.8E-05 50.3 3.8 26 346-371 171-196 (365)
353 2hup_A RAS-related protein RAB 85.1 0.41 1.4E-05 46.0 2.7 23 345-367 29-51 (201)
354 2grj_A Dephospho-COA kinase; T 85.0 0.45 1.5E-05 46.0 3.0 24 346-369 13-36 (192)
355 2nq2_C Hypothetical ABC transp 85.0 0.4 1.4E-05 48.6 2.6 24 347-370 33-56 (253)
356 2ihy_A ABC transporter, ATP-bi 84.9 0.39 1.3E-05 49.4 2.6 24 347-370 49-72 (279)
357 2h57_A ADP-ribosylation factor 84.9 0.35 1.2E-05 45.8 2.1 24 344-367 20-43 (190)
358 3aez_A Pantothenate kinase; tr 84.8 0.35 1.2E-05 50.6 2.2 27 345-371 90-116 (312)
359 4g1u_C Hemin import ATP-bindin 84.7 0.39 1.3E-05 49.0 2.5 24 347-370 39-62 (266)
360 2fv8_A H6, RHO-related GTP-bin 84.7 0.44 1.5E-05 46.0 2.7 23 345-367 25-47 (207)
361 2yz2_A Putative ABC transporte 84.7 0.41 1.4E-05 48.8 2.7 24 347-370 35-58 (266)
362 3r7w_A Gtpase1, GTP-binding pr 84.6 1.1 3.9E-05 46.4 6.1 24 345-368 3-26 (307)
363 1p9r_A General secretion pathw 84.5 0.44 1.5E-05 52.0 3.0 26 346-371 168-193 (418)
364 3k53_A Ferrous iron transport 84.5 0.42 1.4E-05 48.6 2.7 23 346-368 4-26 (271)
365 1z47_A CYSA, putative ABC-tran 84.3 0.51 1.7E-05 50.3 3.2 25 347-371 43-67 (355)
366 4b3f_X DNA-binding protein smu 84.2 0.41 1.4E-05 55.3 2.7 19 347-365 207-225 (646)
367 3fvq_A Fe(3+) IONS import ATP- 84.2 0.5 1.7E-05 50.5 3.1 25 347-371 32-56 (359)
368 3cpj_B GTP-binding protein YPT 84.2 0.48 1.7E-05 46.3 2.8 23 345-367 13-35 (223)
369 3zvl_A Bifunctional polynucleo 84.2 0.42 1.4E-05 52.1 2.6 24 346-369 259-282 (416)
370 1f6b_A SAR1; gtpases, N-termin 84.1 0.44 1.5E-05 45.8 2.4 24 344-367 24-47 (198)
371 3d31_A Sulfate/molybdate ABC t 84.1 0.5 1.7E-05 50.2 3.1 24 347-370 28-51 (348)
372 2jeo_A Uridine-cytidine kinase 84.0 0.47 1.6E-05 47.4 2.7 25 346-370 26-50 (245)
373 2yyz_A Sugar ABC transporter, 83.9 0.53 1.8E-05 50.3 3.2 25 347-371 31-55 (359)
374 4bas_A ADP-ribosylation factor 83.9 0.48 1.7E-05 44.9 2.6 24 344-367 16-39 (199)
375 2ghi_A Transport protein; mult 83.9 0.45 1.5E-05 48.4 2.5 24 346-369 47-70 (260)
376 2ewv_A Twitching motility prot 83.9 0.39 1.3E-05 51.6 2.1 26 345-370 136-161 (372)
377 3d3q_A TRNA delta(2)-isopenten 83.9 0.56 1.9E-05 49.6 3.3 24 347-370 9-32 (340)
378 2x77_A ADP-ribosylation factor 83.9 0.37 1.3E-05 45.5 1.7 23 344-366 21-43 (189)
379 3foz_A TRNA delta(2)-isopenten 83.8 0.58 2E-05 48.9 3.3 25 346-370 11-35 (316)
380 2it1_A 362AA long hypothetical 83.6 0.55 1.9E-05 50.2 3.2 25 347-371 31-55 (362)
381 3b85_A Phosphate starvation-in 83.5 0.42 1.4E-05 46.9 2.0 24 344-368 22-45 (208)
382 3rlf_A Maltose/maltodextrin im 83.4 0.57 1.9E-05 50.4 3.2 25 347-371 31-55 (381)
383 1v43_A Sugar-binding transport 83.4 0.57 1.9E-05 50.3 3.2 25 347-371 39-63 (372)
384 1g29_1 MALK, maltose transport 83.3 0.58 2E-05 50.2 3.2 25 347-371 31-55 (372)
385 2h92_A Cytidylate kinase; ross 83.2 0.64 2.2E-05 45.2 3.3 25 346-370 4-28 (219)
386 3a1s_A Iron(II) transport prot 83.2 0.54 1.9E-05 47.6 2.8 23 345-367 5-27 (258)
387 3exa_A TRNA delta(2)-isopenten 83.1 0.61 2.1E-05 48.8 3.1 25 347-371 5-29 (322)
388 3lda_A DNA repair protein RAD5 83.1 0.55 1.9E-05 50.9 2.9 21 346-366 179-199 (400)
389 1q3t_A Cytidylate kinase; nucl 83.1 0.56 1.9E-05 46.5 2.8 26 345-370 16-41 (236)
390 2qu8_A Putative nucleolar GTP- 83.0 0.52 1.8E-05 46.3 2.5 24 344-367 28-51 (228)
391 1oxx_K GLCV, glucose, ABC tran 82.9 0.51 1.7E-05 50.3 2.5 25 347-371 33-57 (353)
392 2f6r_A COA synthase, bifunctio 82.9 0.55 1.9E-05 48.2 2.7 23 345-367 75-97 (281)
393 1xx6_A Thymidine kinase; NESG, 82.8 2 6.7E-05 41.4 6.5 25 410-434 82-106 (191)
394 1sq5_A Pantothenate kinase; P- 82.8 0.55 1.9E-05 48.9 2.7 25 346-370 81-105 (308)
395 2g3y_A GTP-binding protein GEM 82.7 0.59 2E-05 45.8 2.8 23 345-367 37-59 (211)
396 2qnr_A Septin-2, protein NEDD5 82.7 0.52 1.8E-05 49.0 2.4 24 345-368 18-41 (301)
397 2z43_A DNA repair and recombin 82.6 0.57 2E-05 49.1 2.8 25 345-369 107-131 (324)
398 1rj9_A FTSY, signal recognitio 82.5 0.5 1.7E-05 49.2 2.3 25 346-370 103-127 (304)
399 1m8p_A Sulfate adenylyltransfe 82.5 0.93 3.2E-05 51.5 4.7 25 346-370 397-421 (573)
400 1v5w_A DMC1, meiotic recombina 82.3 0.63 2.1E-05 49.3 3.0 24 345-368 122-145 (343)
401 1w4r_A Thymidine kinase; type 82.3 1.5 5.2E-05 42.4 5.4 23 347-369 22-45 (195)
402 1pui_A ENGB, probable GTP-bind 82.3 0.38 1.3E-05 46.3 1.2 25 344-368 25-49 (210)
403 2zr9_A Protein RECA, recombina 82.2 0.6 2.1E-05 49.6 2.8 23 346-368 62-84 (349)
404 4dkx_A RAS-related protein RAB 82.2 0.67 2.3E-05 45.6 3.0 23 345-367 13-35 (216)
405 2f1r_A Molybdopterin-guanine d 82.2 0.5 1.7E-05 44.8 1.9 24 347-370 4-27 (171)
406 2hf9_A Probable hydrogenase ni 82.1 0.65 2.2E-05 45.2 2.9 25 345-369 38-62 (226)
407 2yc2_C IFT27, small RAB-relate 82.0 0.3 1E-05 46.7 0.3 24 345-368 20-43 (208)
408 2i1q_A DNA repair and recombin 82.0 0.62 2.1E-05 48.6 2.8 24 345-368 98-121 (322)
409 3b1v_A Ferrous iron uptake tra 81.9 0.61 2.1E-05 47.7 2.6 24 345-368 3-26 (272)
410 1g5t_A COB(I)alamin adenosyltr 81.8 0.63 2.2E-05 45.2 2.5 54 410-495 121-180 (196)
411 3tqf_A HPR(Ser) kinase; transf 81.7 0.78 2.7E-05 43.7 3.0 24 344-367 15-38 (181)
412 3pwf_A Rubrerythrin; non heme 81.5 0.75 2.6E-05 43.6 2.8 28 287-321 137-164 (170)
413 1yuz_A Nigerythrin; rubrythrin 81.4 0.76 2.6E-05 44.9 2.9 27 287-320 170-196 (202)
414 3t5d_A Septin-7; GTP-binding p 81.4 0.63 2.1E-05 47.4 2.5 22 345-366 8-29 (274)
415 3i8s_A Ferrous iron transport 81.4 0.7 2.4E-05 47.2 2.8 23 345-367 3-25 (274)
416 3iby_A Ferrous iron transport 81.3 0.7 2.4E-05 46.7 2.8 22 347-368 3-24 (256)
417 4dhe_A Probable GTP-binding pr 81.3 0.55 1.9E-05 45.6 1.9 24 344-367 28-51 (223)
418 2wsm_A Hydrogenase expression/ 81.3 0.73 2.5E-05 44.7 2.8 25 345-369 30-54 (221)
419 2qag_B Septin-6, protein NEDD5 81.3 0.55 1.9E-05 51.3 2.1 35 335-369 31-66 (427)
420 1odf_A YGR205W, hypothetical 3 81.2 0.68 2.3E-05 47.8 2.7 26 345-370 31-56 (290)
421 3nh6_A ATP-binding cassette SU 81.2 0.65 2.2E-05 48.4 2.5 25 346-370 81-105 (306)
422 3io5_A Recombination and repai 81.1 0.72 2.4E-05 48.3 2.8 20 348-367 31-50 (333)
423 3b9q_A Chloroplast SRP recepto 81.1 0.69 2.3E-05 48.1 2.7 25 346-370 101-125 (302)
424 2d2e_A SUFC protein; ABC-ATPas 81.1 0.75 2.6E-05 46.3 2.9 22 347-368 31-52 (250)
425 3tqc_A Pantothenate kinase; bi 81.0 0.72 2.5E-05 48.4 2.8 25 346-370 93-117 (321)
426 2zu0_C Probable ATP-dependent 81.0 0.71 2.4E-05 47.1 2.7 22 347-368 48-69 (267)
427 2pjz_A Hypothetical protein ST 81.0 0.67 2.3E-05 47.2 2.5 23 347-369 32-54 (263)
428 2kdx_A HYPA, hydrogenase/ureas 80.9 1 3.4E-05 40.0 3.3 29 286-320 71-100 (119)
429 2gk6_A Regulator of nonsense t 80.8 0.63 2.2E-05 53.5 2.5 38 331-368 181-218 (624)
430 1u0l_A Probable GTPase ENGC; p 80.7 0.7 2.4E-05 47.9 2.6 25 346-370 170-194 (301)
431 2bbs_A Cystic fibrosis transme 80.7 0.67 2.3E-05 47.9 2.4 25 346-370 65-89 (290)
432 2qm8_A GTPase/ATPase; G protei 80.7 0.71 2.4E-05 48.8 2.7 25 345-369 55-79 (337)
433 1mky_A Probable GTP-binding pr 80.6 1.3 4.4E-05 48.5 4.8 25 344-368 179-203 (439)
434 2ocp_A DGK, deoxyguanosine kin 80.6 0.88 3E-05 45.2 3.2 25 346-370 3-27 (241)
435 3e2i_A Thymidine kinase; Zn-bi 80.5 2.8 9.5E-05 41.3 6.6 28 409-436 101-128 (219)
436 2qag_C Septin-7; cell cycle, c 80.4 0.67 2.3E-05 50.5 2.4 25 345-369 31-55 (418)
437 1xjc_A MOBB protein homolog; s 80.4 0.81 2.8E-05 43.3 2.7 23 347-369 6-28 (169)
438 3e70_C DPA, signal recognition 80.4 0.75 2.6E-05 48.5 2.7 26 345-370 129-154 (328)
439 1lko_A Rubrerythrin all-iron(I 80.2 1.1 3.8E-05 43.3 3.6 29 287-321 154-182 (191)
440 3a43_A HYPD, hydrogenase nicke 80.2 0.81 2.8E-05 41.9 2.5 35 286-320 68-117 (139)
441 1bif_A 6-phosphofructo-2-kinas 80.0 0.86 2.9E-05 50.4 3.1 25 345-369 39-63 (469)
442 1np6_A Molybdopterin-guanine d 79.9 0.84 2.9E-05 43.4 2.7 24 347-370 8-31 (174)
443 2axn_A 6-phosphofructo-2-kinas 79.8 0.76 2.6E-05 51.6 2.7 25 345-369 35-59 (520)
444 3gd7_A Fusion complex of cysti 79.7 0.73 2.5E-05 49.7 2.4 24 346-369 48-71 (390)
445 3bh0_A DNAB-like replicative h 79.7 0.85 2.9E-05 47.6 2.8 22 346-367 69-90 (315)
446 3th5_A RAS-related C3 botulinu 80.8 0.37 1.3E-05 46.2 0.0 24 344-367 29-52 (204)
447 1p5z_B DCK, deoxycytidine kina 79.6 0.54 1.9E-05 47.5 1.2 26 345-370 24-49 (263)
448 2rcn_A Probable GTPase ENGC; Y 79.6 0.84 2.9E-05 48.6 2.8 25 346-370 216-240 (358)
449 1vma_A Cell division protein F 79.4 0.85 2.9E-05 47.5 2.7 25 346-370 105-129 (306)
450 3k1j_A LON protease, ATP-depen 79.3 0.78 2.7E-05 52.5 2.6 60 655-714 195-262 (604)
451 3tui_C Methionine import ATP-b 79.2 0.99 3.4E-05 48.2 3.2 25 347-371 56-80 (366)
452 2www_A Methylmalonic aciduria 79.0 0.94 3.2E-05 48.1 2.9 25 345-369 74-98 (349)
453 3h0g_L DNA-directed RNA polyme 78.9 0.91 3.1E-05 35.5 2.0 29 286-319 19-47 (63)
454 3cr8_A Sulfate adenylyltranfer 78.8 0.81 2.8E-05 51.7 2.5 26 345-370 369-394 (552)
455 1tq4_A IIGP1, interferon-induc 78.7 0.97 3.3E-05 49.1 3.0 26 345-370 69-94 (413)
456 1f2t_A RAD50 ABC-ATPase; DNA d 78.6 1.1 3.6E-05 41.3 2.8 22 348-369 26-47 (149)
457 1c9k_A COBU, adenosylcobinamid 78.5 0.98 3.4E-05 43.2 2.6 20 348-367 2-21 (180)
458 1u94_A RECA protein, recombina 78.5 0.97 3.3E-05 48.1 2.9 23 346-368 64-86 (356)
459 1ega_A Protein (GTP-binding pr 78.5 0.99 3.4E-05 46.7 2.9 23 346-368 9-31 (301)
460 1h65_A Chloroplast outer envel 78.2 0.92 3.1E-05 46.0 2.5 24 344-367 38-61 (270)
461 2wjy_A Regulator of nonsense t 78.1 0.84 2.9E-05 54.0 2.5 38 331-368 357-394 (800)
462 3gj0_A GTP-binding nuclear pro 78.0 0.73 2.5E-05 44.8 1.6 21 344-364 14-34 (221)
463 4edh_A DTMP kinase, thymidylat 77.9 1 3.6E-05 44.2 2.7 26 345-370 6-31 (213)
464 2og2_A Putative signal recogni 77.9 0.98 3.3E-05 48.2 2.7 25 346-370 158-182 (359)
465 2px0_A Flagellar biosynthesis 77.8 0.99 3.4E-05 46.7 2.6 24 346-369 106-129 (296)
466 2yv5_A YJEQ protein; hydrolase 77.8 1.2 4E-05 46.3 3.2 24 346-370 166-189 (302)
467 2obl_A ESCN; ATPase, hydrolase 77.7 1.2 4.2E-05 47.2 3.4 25 346-370 72-96 (347)
468 3eph_A TRNA isopentenyltransfe 77.5 1 3.6E-05 48.6 2.7 25 347-371 4-28 (409)
469 1tf7_A KAIC; homohexamer, hexa 77.4 0.85 2.9E-05 51.2 2.1 26 345-370 281-306 (525)
470 4djt_A GTP-binding nuclear pro 77.2 0.92 3.1E-05 43.8 2.1 23 344-366 10-32 (218)
471 2yhs_A FTSY, cell division pro 77.2 1 3.6E-05 50.0 2.7 25 346-370 294-318 (503)
472 2j9r_A Thymidine kinase; TK1, 77.2 4.8 0.00017 39.5 7.2 25 410-434 102-126 (214)
473 3gmt_A Adenylate kinase; ssgci 77.1 0.83 2.9E-05 45.5 1.7 25 346-370 9-33 (230)
474 4ag6_A VIRB4 ATPase, type IV s 77.0 1.1 3.9E-05 48.0 2.9 25 345-369 35-59 (392)
475 2aka_B Dynamin-1; fusion prote 77.0 1.1 3.8E-05 45.7 2.8 23 345-367 26-48 (299)
476 2npi_A Protein CLP1; CLP1-PCF1 77.0 1.1 3.9E-05 49.3 3.0 27 343-370 137-163 (460)
477 1tf7_A KAIC; homohexamer, hexa 76.9 0.91 3.1E-05 51.0 2.2 35 345-379 39-78 (525)
478 2dpy_A FLII, flagellum-specifi 76.4 1.4 4.7E-05 48.4 3.4 26 346-371 158-183 (438)
479 1twf_L ABC10-alpha, DNA-direct 76.3 1.7 5.8E-05 34.7 3.0 30 285-319 25-54 (70)
480 3def_A T7I23.11 protein; chlor 76.3 1.2 4.1E-05 44.9 2.7 24 344-367 35-58 (262)
481 3cnl_A YLQF, putative uncharac 76.1 1.3 4.4E-05 45.0 2.9 22 346-367 100-121 (262)
482 3t34_A Dynamin-related protein 76.1 1.4 4.6E-05 46.8 3.2 25 347-371 36-62 (360)
483 1t9h_A YLOQ, probable GTPase E 75.9 0.63 2.2E-05 48.6 0.5 24 346-369 174-197 (307)
484 2bjv_A PSP operon transcriptio 75.9 1.8 6.1E-05 43.4 3.9 54 659-714 98-151 (265)
485 2xzl_A ATP-dependent helicase 75.8 1.3 4.6E-05 52.3 3.3 37 331-367 361-397 (802)
486 1wf3_A GTP-binding protein; GT 75.6 1.3 4.6E-05 45.8 2.9 22 346-367 8-29 (301)
487 1puj_A YLQF, conserved hypothe 75.5 1.4 4.8E-05 45.2 3.0 24 344-367 119-142 (282)
488 3lv8_A DTMP kinase, thymidylat 75.3 1.3 4.4E-05 44.3 2.6 26 345-370 27-52 (236)
489 3v9p_A DTMP kinase, thymidylat 75.2 1.1 3.7E-05 44.6 1.9 26 345-370 25-50 (227)
490 3cmu_A Protein RECA, recombina 75.1 1.3 4.3E-05 57.2 2.9 25 345-369 1427-1451(2050)
491 2r6a_A DNAB helicase, replicat 74.9 1.4 4.7E-05 48.5 2.9 34 83-116 17-50 (454)
492 1xp8_A RECA protein, recombina 74.8 1.4 4.8E-05 47.1 2.9 22 347-368 76-97 (366)
493 3tmk_A Thymidylate kinase; pho 74.8 1.4 4.9E-05 43.3 2.7 27 345-371 5-31 (216)
494 3p32_A Probable GTPase RV1496/ 74.3 1.4 4.8E-05 46.7 2.7 25 345-369 79-103 (355)
495 2fz4_A DNA repair protein RAD2 74.3 2 7E-05 42.6 3.7 39 331-369 94-132 (237)
496 2dby_A GTP-binding protein; GD 74.1 1.6 5.5E-05 46.7 3.1 23 346-368 2-24 (368)
497 1ny5_A Transcriptional regulat 74.0 1.8 6.3E-05 46.4 3.6 61 656-718 226-292 (387)
498 3fdi_A Uncharacterized protein 73.8 1.9 6.6E-05 41.7 3.4 28 346-373 7-34 (201)
499 1jal_A YCHF protein; nucleotid 73.7 1.7 5.9E-05 46.3 3.2 23 346-368 3-25 (363)
500 2qag_A Septin-2, protein NEDD5 73.7 1.2 4.2E-05 47.4 2.0 23 345-367 37-59 (361)
No 1
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=100.00 E-value=5.2e-70 Score=595.59 Aligned_cols=363 Identities=34% Similarity=0.470 Sum_probs=311.4
Q ss_pred CCCCCCceEEEEEEcccccc------cccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEEEEEecccccccccc
Q psy17703 1 MPAGQTPHSVVLFTYNDLVD------SIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDE 74 (720)
Q Consensus 1 VP~G~~Prsi~v~~~~dLvd------~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 74 (720)
||.|++||+++|++++|||| +|+|||+|+|+|||++. |++++|+++. +..
T Consensus 128 ~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~v~GI~~~~-----------------~l~a~~i~~~-------~~~ 183 (506)
T 3f8t_A 128 VRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVRSA-----------------TLDALEVHKK-------DPI 183 (506)
T ss_dssp EEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEEEEETT-----------------EEEEEEEEEE-------CSS
T ss_pred CCCCCCCceEEEEecccccCcccccccccCCCEEEEEEEEEEe-----------------EEEEEEEEEc-------Ccc
Confidence 68999999999999999999 99999999999999853 8999999872 123
Q ss_pred cCCCCChHHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCcccccccccccCCcccccCCCcccCCCCC
Q psy17703 75 KEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSS 154 (720)
Q Consensus 75 ~~~~~~~~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~~~~~~~~~~~~~l~~g~~~~ 154 (720)
....||+++++.|++++++ ++|++|++|||| ||||++||+||+|+|+||.+|.
T Consensus 184 ~~~~~t~ed~~~i~~l~~~-~~~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k~------------------------- 236 (506)
T 3f8t_A 184 PEVHPDPAELEEFRELADK-DPLTTFARAIAP-LPGAEEVGKMLALQLFSCVGKN------------------------- 236 (506)
T ss_dssp CCCCCCHHHHHHHHHHHHS-CHHHHHHHHHCC-STTCHHHHHHHHHHHTTCCSSG-------------------------
T ss_pred ccCCCCHHHHHHHHHHHHH-HHHHHHHHHhcc-cCCCHHHHHHHHHHHcCCcccc-------------------------
Confidence 4567999999999999999 999999999999 9999999999999999999651
Q ss_pred ccccccCCCCCcCCccccCCCchhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhC
Q psy17703 155 IGSLRTPRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERH 234 (720)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~ 234 (720)
T Consensus 237 -------------------------------------------------------------------------------- 236 (506)
T 3f8t_A 237 -------------------------------------------------------------------------------- 236 (506)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccceEEEecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCC
Q psy17703 235 PAAVLEHQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCT 314 (720)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~ 314 (720)
+
T Consensus 237 ---------------------------------------------------------------------r---------- 237 (506)
T 3f8t_A 237 ---------------------------------------------------------------------S---------- 237 (506)
T ss_dssp ---------------------------------------------------------------------G----------
T ss_pred ---------------------------------------------------------------------C----------
Confidence 0
Q ss_pred CCCCCCcceeeccCCccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHH-HhhCCCCccccCCccccccccceeecCc
Q psy17703 315 NCSTNHCFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYV-YDLVPRSQYTSGKGSSAVGLTAYITKDP 393 (720)
Q Consensus 315 ~C~~~~~~~~~~~~s~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~v-a~~~pr~~~~~g~~ss~~glta~~~~~~ 393 (720)
+++||||+|+||| ||+||+++ ++++||.+|++|..++..++++. .+++
T Consensus 238 -----------------------------gdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s-~r~~ 286 (506)
T 3f8t_A 238 -----------------------------ERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAV-LKED 286 (506)
T ss_dssp -----------------------------GCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEE-EEES
T ss_pred -----------------------------CceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEE-EEcC
Confidence 5899999999999 99999999 99999999999998888899988 6666
Q ss_pred cccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccc
Q psy17703 394 ETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTII 473 (720)
Q Consensus 394 ~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~ 473 (720)
+| |.+++|++++||+|+||+|||++|+++.|++||++||++++++. |. ++|++|+||||+||++ +|+..+++
T Consensus 287 -tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~--G~--~lparf~VIAA~NP~~-~yd~~~s~- 358 (506)
T 3f8t_A 287 -RG-WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD--GI--ALNARCAVLAAINPGE-QWPSDPPI- 358 (506)
T ss_dssp -SS-EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET--TE--EEECCCEEEEEECCCC---CCSCGG-
T ss_pred -CC-cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC--CE--EcCCCeEEEEEeCccc-ccCCCCCc-
Confidence 78 99999999999999999999999999999999999999999996 76 9999999999999999 89888888
Q ss_pred cccCCChhhhccceeEEEecCCChHHHHHH-HHhhcchhHHHHHHHHHH-hhcCCcchHHHHHHHHHHHHHhhhcCC---
Q psy17703 474 DNIRLPHTLLSRFDLIFLLLDPQSEQFDAR-LARHLDITVLRDYIAYAQ-EHLSPTLSEEASQRLIQTYVDMRKLGA--- 548 (720)
Q Consensus 474 ~~~~l~~aLlsRFdli~~l~d~~~~~~d~~-la~~i~~~~l~~~i~~ar-~~~~p~ls~ea~~~l~~~y~~lr~~~~--- 548 (720)
+|+.||++++||||+++.+.|.++++.|.. ....++.+.+++|+.||| ++++|.+++++.+.|.++|..+|....
T Consensus 359 ~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~ 438 (506)
T 3f8t_A 359 ARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERL 438 (506)
T ss_dssp GGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCccccc
Confidence 999999999999999999998887766542 223458899999999999 788999999999999999999997311
Q ss_pred --CCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHHHHhccCCCCCcceeeee
Q psy17703 549 --GRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSIL 612 (720)
Q Consensus 549 --~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l~~~~~d~~~g~~d~~~~ 612 (720)
....+++|+|++++|+|+|+|+|+|++|+.|+++|+.+|++|++.|++++++||++|.+|++++
T Consensus 439 ~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~~~a~dp~tg~id~~~~ 504 (506)
T 3f8t_A 439 GMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLETAMQIPGGDEIRISSL 504 (506)
T ss_dssp HTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHTTC------------
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhcCCCCCCeEeEEec
Confidence 1246789999999999999999999999999999999999999999999999999999999876
No 2
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.5e-68 Score=611.70 Aligned_cols=423 Identities=37% Similarity=0.607 Sum_probs=394.2
Q ss_pred chhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccccc-cceEEEecCCcccc
Q psy17703 176 IRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLE-HQIQVRPFNAKKTR 254 (720)
Q Consensus 176 ~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 254 (720)
..|...+++|...++.+|.||++||..||++|++.|+++|.+++++|+.|+++++...+|+.... .+++++++|+|...
T Consensus 22 ~~y~~~i~~~~~~~~~~l~v~~~~l~~~~~~l~~~l~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 101 (595)
T 3f9v_A 22 NKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLDPTYQRDIEKVHVRIVGIPRVI 101 (595)
T ss_dssp CTTHHHHHHHHHHTCSSCCEEHHHHHTTCTTHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGTTTCCCCCCCEECCSCEE
T ss_pred hhHHHHHHHHHHcCCcEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHHHHhhchhhhhccceEEEEEeCCCCCC
Confidence 35778899999999999999999999999999999999999999999999999987766665433 36899999999999
Q ss_pred ccccCCCcCCCceEEEeeEEEEecccchhhhhheeeccc--CCceeeee---eccCcccCCccCCCCCCCCcceeeccCC
Q psy17703 255 NLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIV--CNYSTTVE---IDRGRIHEPTLCTNCSTNHCFSLVHNRS 329 (720)
Q Consensus 255 ~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~--Cg~~~~~~---~~~~~~~~p~~C~~C~~~~~~~~~~~~s 329 (720)
.+|+|+++++|+||+|+|+|+|+|.|+|+++++.|.|.. ||++..++ ...+.+.+|..||+|++.++|.+.++.|
T Consensus 102 ~~r~l~~~~i~~lv~v~G~V~r~s~v~~~~~~~~~~C~~~~C~~~~~~~~~~~~~~~~~~p~~C~~C~~~~~~~~~~~~s 181 (595)
T 3f9v_A 102 ELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKPGQFRLIPEKT 181 (595)
T ss_dssp CGGGCCGGGTTCCEEEEEEEEEECCCEEEEEECCCEEESSSCCCBCCSSCSSCCCSSCCCCSSCTTTCCCSEEECCSTTC
T ss_pred ChhhcchhhCCcEEEEEEEEEEecCEEEEEEEEEEEecCCCCCCEEEEEeccccCCcccCCCcCCCCCCCCceEEeccCc
Confidence 999999999999999999999999999999999999999 99998876 3457899999999999988999999999
Q ss_pred ccchhhhhhhhcCC------------------------------------------------------------------
Q psy17703 330 HFTDKQLVRLQETP------------------------------------------------------------------ 343 (720)
Q Consensus 330 ~~~d~Q~iklQE~p------------------------------------------------------------------ 343 (720)
+|+|||++++||.|
T Consensus 182 ~~~d~Q~i~iQe~~~~~~~g~~pr~~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~~~~~~~~~~~~~~~i~a~~i~~~~~ 261 (595)
T 3f9v_A 182 KLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQK 261 (595)
T ss_dssp EEEEEEEEEEECCTTTSCTTSCCCEEEEEEEGGGTTCSCSSCEEEEEEECCCCCSSTTSCTTCCCCCCCCEEEEEEECCC
T ss_pred eeeeeEEEEEEeccccCCCCCCCceEEEEEecccccccccCCEEEEEEEEEecccccccCCCcceEEEEEEEEeeccccc
Confidence 99999999999987
Q ss_pred ---------------------------------------------------CC-------------ccEEEEcCCCCHHH
Q psy17703 344 ---------------------------------------------------AE-------------INILLCGDPGTSKS 359 (720)
Q Consensus 344 ---------------------------------------------------g~-------------i~vLL~G~PGtGKS 359 (720)
+. +||||+||||||||
T Consensus 262 ~~~~~~~t~~~~~~i~~~~~~~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT 341 (595)
T 3f9v_A 262 VLDEVIISEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKS 341 (595)
T ss_dssp CCCCCCCTTSTHHHHHTTSSTTTGGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHH
T ss_pred ccccCCCCHHHHHHHHHHhhCcHHHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHH
Confidence 33 29999999999999
Q ss_pred HHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEe
Q psy17703 360 QLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLS 439 (720)
Q Consensus 360 ~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vs 439 (720)
+||+++++.+++..++.+.+.+..++++...++..++.+..++|++.+|++|+|||||||+|+++.+++|+++||+++++
T Consensus 342 ~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~ 421 (595)
T 3f9v_A 342 QMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVS 421 (595)
T ss_dssp HHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEE
T ss_pred HHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEE
Confidence 99999999999999998888899999999888888889999999999999999999999999999999999999999999
Q ss_pred eeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHHHhhc-----------
Q psy17703 440 IAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL----------- 508 (720)
Q Consensus 440 i~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i----------- 508 (720)
+.++|....+++++++|||+||..|+|++.+++.+|+.|+++|+||||+++.+.+.++++ +..|++|+
T Consensus 422 i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~ 500 (595)
T 3f9v_A 422 IAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKN 500 (595)
T ss_dssp EESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSS
T ss_pred EecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999988 88888875
Q ss_pred --chhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCC--CcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhH
Q psy17703 509 --DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRG--RISAYPRQLESLIRLSEAHAKMRYSETVEVQDV 584 (720)
Q Consensus 509 --~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~--~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv 584 (720)
+.+.+++|+.||++.++|.+++++.+.|.++|.++|......+ .+++|+|++++++|+|+|+|++++++.|+.+|+
T Consensus 501 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv 580 (595)
T 3f9v_A 501 IIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDA 580 (595)
T ss_dssp TTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHH
Confidence 4578999999999999999999999999999999998765433 688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q psy17703 585 DEAWRLHREALKQSA 599 (720)
Q Consensus 585 ~~Ai~l~~~~l~~~~ 599 (720)
.+|+++++.++++++
T Consensus 581 ~~Ai~l~~~sl~~~~ 595 (595)
T 3f9v_A 581 ERAINIMRLFLESVG 595 (595)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998753
No 3
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=99.96 E-value=1.6e-29 Score=263.76 Aligned_cols=170 Identities=20% Similarity=0.398 Sum_probs=157.2
Q ss_pred hhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccc-cccceEEEecCCccccc
Q psy17703 177 RTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAV-LEHQIQVRPFNAKKTRN 255 (720)
Q Consensus 177 ~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 255 (720)
.|...+++|...++.+|.||++||..||++||+.|+++|.+++++|+.|+++++....|+.. ...++++|++|++....
T Consensus 29 ~Y~~~i~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~vr~~~~~~~~~ 108 (268)
T 2vl6_A 29 KYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLDPTYQRDIEKVHVRIVGIPRVIE 108 (268)
T ss_dssp TTHHHHHHHHHTTCCCEEEEHHHHHHHCHHHHHHHHHHTTTTHHHHHHHHHHHHHTTCGGGTTTCSCCCEEEECCSCEEC
T ss_pred HHHHHHHHHHHcCCcEEEEEHHHHHhhhHHHHHHHHHCHHHHHHHHHHHHHHHHHHhCchhhccCccEEEEEECCCCCCc
Confidence 46777999999999999999999999999999999999999999999999999877665543 23579999999999999
Q ss_pred cccCCCcCCCceEEEeeEEEEecccchhhhhheeec--ccCCceeeee---eccCcccCCccCCCCCCCCcceeeccCCc
Q psy17703 256 LRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRC--IVCNYSTTVE---IDRGRIHEPTLCTNCSTNHCFSLVHNRSH 330 (720)
Q Consensus 256 ~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C--~~Cg~~~~~~---~~~~~~~~p~~C~~C~~~~~~~~~~~~s~ 330 (720)
+|+|+++++||||+|+|+|+|+|.|+|++++++|.| ..||++..+. +..+.+.+|..||.|++.++|.++++.|+
T Consensus 109 iR~l~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~~~C~~~~~~~~~~~~~~~~~~P~~Cp~C~~~~~~~l~~~~s~ 188 (268)
T 2vl6_A 109 LRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKPGQFRLIPEKTK 188 (268)
T ss_dssp GGGCCGGGTTSEEEEEEEEEEECCCEEEEEECEEEEECTTCCCEEESSTTSCCCTTCCCCSBCTTTCCBCEEEECGGGCE
T ss_pred cccCChhHCCCeEEEEEEEEEcCCcceEeEEEEEECCCCCCCCEEeeeecccCCCcccCCccCCCCCCCCCEEEecCccE
Confidence 999999999999999999999999999999999999 9999999888 66788999999999999889999999999
Q ss_pred cchhhhhhhhcCCCCc
Q psy17703 331 FTDKQLVRLQETPAEI 346 (720)
Q Consensus 331 ~~d~Q~iklQE~pg~i 346 (720)
|.|||++++||.|+++
T Consensus 189 f~D~Q~ikiQE~pe~v 204 (268)
T 2vl6_A 189 LIDWQKAVIQERPEEV 204 (268)
T ss_dssp EEEEEEEEEECCGGGS
T ss_pred EEeeEEEEEEeCCCCC
Confidence 9999999999998544
No 4
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=99.96 E-value=5e-29 Score=261.22 Aligned_cols=170 Identities=24% Similarity=0.419 Sum_probs=154.0
Q ss_pred ccCCCc---hhhHHHHHHH--hcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccccccceEE
Q psy17703 171 RLRPDI---RTDRRIRQIF--SLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLEHQIQV 245 (720)
Q Consensus 171 ~~~~~~---~~~~~~r~~~--~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~ 245 (720)
+|+.|+ .|...+++|. ..+..+|.||++||..||++||+.|+++|.+++++|+.|++++. .+.. .. ++++
T Consensus 17 ~f~~Fl~~~~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~--~~~~--~~-~~~v 91 (279)
T 1ltl_A 17 KFEEFFSLQDYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNID--RLRK--NV-DLNI 91 (279)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHHHTTTC--TTCC--CC-CCEE
T ss_pred HHHHHhccchHHHHHHHHHhhCCCCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHhc--cccC--Ce-eEEE
Confidence 455554 3567789998 78899999999999999999999999999999999999998874 1211 12 7999
Q ss_pred EecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCCCCCCCcceee
Q psy17703 246 RPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLV 325 (720)
Q Consensus 246 ~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~~~~~ 325 (720)
|+.|++....+|+|+++++||||+|+|+|+|+|.|+|++++++|.|..||++.++++..+.+.+|..||+|++.+ |.++
T Consensus 92 r~~~~~~~~~iR~L~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~~-f~l~ 170 (279)
T 1ltl_A 92 RFSGISNVIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQSTNMITEPSLCSECGGRS-FRLL 170 (279)
T ss_dssp EEECCSCBCCGGGCCGGGTTSEEEEEEEEEEECCCEEEEEEEEEEETTTCCEEEEECSSSSCCCCSCCTTTCCCC-EEEC
T ss_pred EEECCCCCCCcccCChhhCCCEEEEEEEEEEecceEEEEEEEEEEcCCCCCEEEEEecCCcccCCCcCCCCCCCC-cEEe
Confidence 999999999999999999999999999999999999999999999999999999998888999999999999987 9999
Q ss_pred ccCCccchhhhhhhhcCCCCc
Q psy17703 326 HNRSHFTDKQLVRLQETPAEI 346 (720)
Q Consensus 326 ~~~s~~~d~Q~iklQE~pg~i 346 (720)
++.|+|.|||++++||.|+.+
T Consensus 171 ~~~s~f~D~Q~ikiQE~pe~v 191 (279)
T 1ltl_A 171 QDESEFLDTQTLKLQEPLENL 191 (279)
T ss_dssp GGGCEEEEEEEEEEECCSTTC
T ss_pred ccccEEEeeEEEEEecCcccC
Confidence 999999999999999999665
No 5
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.88 E-value=2.8e-21 Score=207.52 Aligned_cols=233 Identities=19% Similarity=0.179 Sum_probs=170.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cC-CccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SG-KGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD 423 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g-~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~ 423 (720)
.|+||+||||||||++++++++.++...+. .. .......+.+....+...+.+.+.+|.+ .++++||||++++++
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l---~~~vl~iDEi~~~~~ 123 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPV---FSNFILADEVNRSPA 123 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTT---CSSEEEEETGGGSCH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCcc---cccEEEEEccccCCH
Confidence 599999999999999999999988654321 11 1111112222222122334455555654 368999999999999
Q ss_pred HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHH
Q psy17703 424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDAR 503 (720)
Q Consensus 424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~ 503 (720)
+.++.|+++|+++.+++ .|.....+.++.++||+||.... ....++++|++||++.+.+..|+.++....
T Consensus 124 ~~~~~Ll~~l~~~~~~~--~g~~~~~~~~~~viat~np~~~~--------~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~i 193 (331)
T 2r44_A 124 KVQSALLECMQEKQVTI--GDTTYPLDNPFLVLATQNPVEQE--------GTYPLPEAQVDRFMMKIHLTYLDKESELEV 193 (331)
T ss_dssp HHHHHHHHHHHHSEEEE--TTEEEECCSSCEEEEEECTTCCS--------CCCCCCHHHHTTSSEEEECCCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCceee--CCEEEECCCCEEEEEecCCCccc--------CcccCCHHHHhheeEEEEcCCCCHHHHHHH
Confidence 99999999999999988 78888899999999999987621 123589999999998899998887777666
Q ss_pred HHhhcch--------hHHHHHHHHHHhhc-CCcchHHHHHHHHHHHHHhhhcCCCC-------CCcccCHHHHHHHHHHH
Q psy17703 504 LARHLDI--------TVLRDYIAYAQEHL-SPTLSEEASQRLIQTYVDMRKLGAGR-------GRISAYPRQLESLIRLS 567 (720)
Q Consensus 504 la~~i~~--------~~l~~~i~~ar~~~-~p~ls~ea~~~l~~~y~~lr~~~~~~-------~~~~~t~R~le~lirla 567 (720)
+..+... ......+..+++.. ...+++++.+.+.+.+..+|..+... ....+++|.+..+++++
T Consensus 194 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a 273 (331)
T 2r44_A 194 MRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVA 273 (331)
T ss_dssp HHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHH
T ss_pred HHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHH
Confidence 6554321 11233333444322 45689999999998888877653200 12456889999999999
Q ss_pred HHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703 568 EAHAKMRYSETVEVQDVDEAWRLH 591 (720)
Q Consensus 568 ~A~A~l~~~~~V~~~Dv~~Ai~l~ 591 (720)
+++|.+++++.|+.+|+.+|+..+
T Consensus 274 ~a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 274 KAMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp HHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHH
Confidence 999999999999999999998754
No 6
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.88 E-value=7.2e-22 Score=213.02 Aligned_cols=226 Identities=21% Similarity=0.252 Sum_probs=170.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccc---------------------------------ccccccee--
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSS---------------------------------AVGLTAYI-- 389 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss---------------------------------~~glta~~-- 389 (720)
..|+||+||||||||++++++++.+++..+..+.... ...+.+..
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 124 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDI 124 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECH
T ss_pred CceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechh
Confidence 4589999999999999999999998763221110000 00000000
Q ss_pred ecCccccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCC
Q psy17703 390 TKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTS 469 (720)
Q Consensus 390 ~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~ 469 (720)
.+....+.+...+|.+..+++|++||||+++++.+.++.|+++|+++...+.+.|.....+.++.+++|+||..+
T Consensus 125 ~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~----- 199 (350)
T 1g8p_A 125 ERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEG----- 199 (350)
T ss_dssp HHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSC-----
T ss_pred hhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCC-----
Confidence 000011224556787788889999999999999999999999999999888889999999999999999998542
Q ss_pred cccccccCCChhhhccceeEEEecCCChHHHHHHHHhh----------------cchhHHHHHHHHHHhhcC-CcchHHH
Q psy17703 470 KTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARH----------------LDITVLRDYIAYAQEHLS-PTLSEEA 532 (720)
Q Consensus 470 ~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~----------------i~~~~l~~~i~~ar~~~~-p~ls~ea 532 (720)
.++++|++||++.+.+.++++.+.+..+..+ .....+++++.+++.... ..+++++
T Consensus 200 -------~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~ 272 (350)
T 1g8p_A 200 -------DLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTA 272 (350)
T ss_dssp -------CCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHH
T ss_pred -------CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHH
Confidence 4889999999998999988766555444433 133456778877775433 3789999
Q ss_pred HHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703 533 SQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLH 591 (720)
Q Consensus 533 ~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~ 591 (720)
.+.|.+++...+.. ++|.+..+++.+.+.|.+++++.|+.+|+.+|+.+.
T Consensus 273 ~~~l~~~~~~~~~~---------~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 273 LYDCAALCIALGSD---------GLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp HHHHHHHHHHSSSC---------SHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC---------CccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 99999887654321 469999999999999999999999999999998864
No 7
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.86 E-value=1.7e-22 Score=233.09 Aligned_cols=145 Identities=32% Similarity=0.500 Sum_probs=125.6
Q ss_pred CCCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEEEEEecccccccccccCCCCC
Q psy17703 1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDEKEHKFP 80 (720)
Q Consensus 1 VP~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 80 (720)
+|+|++|||++|++++||||+|+|||+|+|||||++.+...+++ +.+++|++|+++++++..+. ......+|
T Consensus 198 ~~~g~~pr~~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~~~~~~--~~~~~~~~~i~a~~i~~~~~------~~~~~~~t 269 (595)
T 3f9v_A 198 VPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKR--GSRAVFDIYMKVSSIEVSQK------VLDEVIIS 269 (595)
T ss_dssp SCTTSCCCEEEEEEEGGGTTCSCSSCEEEEEEECCCCCSSTTSC--TTCCCCCCCCEEEEEEECCC------CCCCCCCT
T ss_pred CCCCCCCceEEEEEecccccccccCCEEEEEEEEEecccccccC--CCcceEEEEEEEEeeccccc------ccccCCCC
Confidence 69999999999999999999999999999999999988654322 34678999999999987532 22445799
Q ss_pred hHHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCcccccccccccCCcccccCCCcccCCCCCcccc
Q psy17703 81 PERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSL 158 (720)
Q Consensus 81 ~~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~ 158 (720)
++++++|.++++++++|+.|.+||+|+||||+++|++++++|+||.+|.+++ ..+++ ++ +.|++|+||++|+.
T Consensus 270 ~~~~~~i~~~~~~~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~-~~~r~---~~-~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 270 EEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELKEALALALFGGVPKVLED-TRIRG---DI-HILIIGDPGTAKSQ 342 (595)
T ss_dssp TSTHHHHHTTSSTTTGGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTT-TEECC---SC-CEEEEESSCCTHHH
T ss_pred HHHHHHHHHHhhCcHHHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccC-CCcCC---Cc-ceEEECCCchHHHH
Confidence 9999999999999999999999999999999999999999999999998876 55554 22 48999999998875
No 8
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.86 E-value=1.1e-20 Score=212.87 Aligned_cols=221 Identities=17% Similarity=0.155 Sum_probs=150.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCC---ccccCCccccccccceeec--Ccccccee-eecceeeecCCceeeccccc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRS---QYTSGKGSSAVGLTAYITK--DPETRQMV-LQTGALVLADSGVCCIDEFD 419 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~---~~~~g~~ss~~glta~~~~--~~~~~~~~-~~~G~l~lad~gI~~IDEid 419 (720)
.|+||+||||||||++++++++.+++. .+.....++...+.+.... ....+.+. ...|. ++..+|+|||||+
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~--l~~~~IL~IDEI~ 119 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGY--LPEAEIVFLDEIW 119 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBCCTTS--GGGCSEEEEESGG
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccC--CCcceeeeHHhHh
Confidence 488999999999999999999988542 1111111111111111000 00011111 22232 2346689999999
Q ss_pred cCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHH
Q psy17703 420 KMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQ 499 (720)
Q Consensus 420 km~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~ 499 (720)
+++++.++.|+++|+++.+++ .|....++.++ +|+|+||.+. ...+.+++++||++.+.+.+|..++
T Consensus 120 r~~~~~q~~LL~~lee~~v~i--~G~~~~~~~~~-iI~ATN~lpe----------~~~~~~aLldRF~~~i~v~~p~~~e 186 (500)
T 3nbx_X 120 KAGPAILNTLLTAINERQFRN--GAHVEKIPMRL-LVAASNELPE----------ADSSLEALYDRMLIRLWLDKVQDKA 186 (500)
T ss_dssp GCCHHHHHHHHHHHHSSEEEC--SSSEEECCCCE-EEEEESSCCC----------TTCTTHHHHTTCCEEEECCSCCCHH
T ss_pred hhcHHHHHHHHHHHHHHhccC--CCCcCCcchhh-hhhccccCCC----------ccccHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999988 78888899887 6777786542 1235689999998888888887744
Q ss_pred -HHHHHHhhc-------------chhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703 500 -FDARLARHL-------------DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR 565 (720)
Q Consensus 500 -~d~~la~~i-------------~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir 565 (720)
....+..+. +.+.+..+..+++ ...+++++.+.+.+.+..+|.... ...+|+|.++++++
T Consensus 187 e~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~---~v~v~d~v~e~i~~l~~~lr~~r~---~~~iS~R~~~~llr 260 (500)
T 3nbx_X 187 NFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIG---EITLPDHVFELIFMLRQQLDKLPD---APYVSDRRWKKAIR 260 (500)
T ss_dssp HHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHT---TCBCCHHHHHHHHHHHHHHHHCSS---SCCCCHHHHHHHHH
T ss_pred hHHHHHhcccccCCCCCCccceecHHHHHHHHhcCC---cccCchHHHHHHHHHHHHhhcCCC---CCccchhHHHHHHH
Confidence 445555443 2334444444433 456888888888877766555322 33468899999999
Q ss_pred HHHHHHHHcCCCCCCHHhHHHH
Q psy17703 566 LSEAHAKMRYSETVEVQDVDEA 587 (720)
Q Consensus 566 la~A~A~l~~~~~V~~~Dv~~A 587 (720)
+|+|+|.+++++.|+++|+..|
T Consensus 261 ~A~A~A~l~gr~~Vt~eDv~~a 282 (500)
T 3nbx_X 261 LLQASAFFSGRSAVAPVDLILL 282 (500)
T ss_dssp HHHHHHHHTTCSBCCGGGGGGG
T ss_pred HHHHHHhhcCCccccchHHHHH
Confidence 9999999999999999999844
No 9
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.76 E-value=1.5e-18 Score=201.30 Aligned_cols=165 Identities=21% Similarity=0.285 Sum_probs=126.8
Q ss_pred eecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCe----------EEeecCceEEEecccCCCCCCCCC
Q psy17703 400 LQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGI----------ICQLNARTSILAAANPCDSQWNTS 469 (720)
Q Consensus 400 ~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~----------~~~l~a~~~iiaaaNp~~g~~~~~ 469 (720)
+++|.+..|++|++||||++.|++..++.|+++|+++.+.+. |. ....|.++.+|+|+|+...
T Consensus 192 i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~--g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~----- 264 (604)
T 3k1j_A 192 VEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPIT--GQSEMSSGAMVRTEPVPCDFVLVAAGNLDTV----- 264 (604)
T ss_dssp EECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCB--CSCTTSGGGGCBCSCEECCCEEEEEECHHHH-----
T ss_pred ccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEec--ccccccccccCCCCccceeEEEEEecCHHHH-----
Confidence 578899999999999999999999999999999999998873 33 4567889999999997521
Q ss_pred cccccccCCChhhhccce---eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhh-----cCCcchHHHHHHHHHHHH
Q psy17703 470 KTIIDNIRLPHTLLSRFD---LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEH-----LSPTLSEEASQRLIQTYV 541 (720)
Q Consensus 470 ~~~~~~~~l~~aLlsRFd---li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~-----~~p~ls~ea~~~l~~~y~ 541 (720)
..++++|++||+ +.+.+.+.... ..+.+..|+.+..+. ..+.+++++.+.|.++|.
T Consensus 265 ------~~l~~~l~~R~~v~~i~i~l~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~ 328 (604)
T 3k1j_A 265 ------DKMHPALRSRIRGYGYEVYMRTTMPD----------TIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQ 328 (604)
T ss_dssp ------HHSCHHHHHHHHHHSEEEECCSEEEC----------CHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHH
T ss_pred ------hhcCHHHHHHhhccceEeeccccccC----------CHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHh
Confidence 148999999997 45555432211 111233333333322 347899999999999986
Q ss_pred HhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703 542 DMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL 590 (720)
Q Consensus 542 ~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l 590 (720)
.+. ..+..++.++|++.+++|.|.++|+.++++.|+.+|+.+|+..
T Consensus 329 r~~---g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 329 KRA---GRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HTT---CSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hhh---ccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 432 1233567789999999999999999999999999999999864
No 10
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=99.69 E-value=1.1e-17 Score=175.08 Aligned_cols=89 Identities=29% Similarity=0.489 Sum_probs=51.7
Q ss_pred CCCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEEEEEecccccccccccCCCCC
Q psy17703 1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDEKEHKFP 80 (720)
Q Consensus 1 VP~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 80 (720)
||+|++|||++|++++||||+|+|||+|+|||||++.+ ++..++|++|++|+|+.+.+. ...+..||
T Consensus 191 vp~G~~Prsi~V~l~~dLvd~~~PGDrV~vtGI~~~~~-------~~~~~~~~~~l~a~~I~~~~~------~~~~~~~t 257 (279)
T 1ltl_A 191 LSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVR-------DERTKRFKNFIYGNYTEFLEQ------EFEELQIS 257 (279)
T ss_dssp CCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEEEEEE-------ETTTTEEEEEEEEEECCBC----------------
T ss_pred CCCCCCCeEEEEEEcccccCccCCCCEEEEEEEEEEee-------CCCCceEEEEEEEEEEEEecC------ccccCCCC
Confidence 79999999999999999999999999999999999876 123578999999999987532 22456799
Q ss_pred hHHHHHHHhhhcCCcHHHHHHH
Q psy17703 81 PERVELLKSLSRKPDIYERLTS 102 (720)
Q Consensus 81 ~~~~~~i~~l~~~~~iy~~l~~ 102 (720)
+|++++|++|+++||+|++|++
T Consensus 258 ~ed~~~i~~ls~~~~iy~~L~~ 279 (279)
T 1ltl_A 258 EEDEEKIKELAGDPNIYEKIIR 279 (279)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHhcCCCHHHHhhC
Confidence 9999999999999999999974
No 11
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.58 E-value=1.1e-14 Score=156.35 Aligned_cols=193 Identities=21% Similarity=0.255 Sum_probs=132.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT 424 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~ 424 (720)
..|+||+||||||||++++++++.+....+. ..+...... +.+ ....-..++++++||||++.|+++
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~---------~~~~~~~~~--~~~--~~~~~~~~~~~vl~lDEi~~l~~~ 121 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKT---------TAAPMIEKS--GDL--AAILTNLSEGDILFIDEIHRLSPA 121 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEE---------EEGGGCCSH--HHH--HHHHHTCCTTCEEEEETGGGCCHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEE---------ecchhccch--hHH--HHHHHhccCCCEEEEechhhcCHH
Confidence 4689999999999999999999887543211 000000000 000 000011457899999999999999
Q ss_pred HHHHHHHHHHhceEeeeccC------eEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChH
Q psy17703 425 TRSILHEVMEQQTLSIAKAG------IICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSE 498 (720)
Q Consensus 425 ~~~~L~e~mE~~~vsi~k~g------~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~ 498 (720)
.+..|+.+|+++.+.+...+ ....+| ++.+|+|+|+.. .++++|++||+.++.+..++.+
T Consensus 122 ~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~~~-------------~l~~~L~~R~~~~i~l~~~~~~ 187 (338)
T 3pfi_A 122 IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTRAG-------------MLSNPLRDRFGMQFRLEFYKDS 187 (338)
T ss_dssp HHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESCGG-------------GSCHHHHTTCSEEEECCCCCHH
T ss_pred HHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCCcc-------------ccCHHHHhhcCEEeeCCCcCHH
Confidence 99999999999876542111 112233 689999999643 4889999999999999988776
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCC
Q psy17703 499 QFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSET 578 (720)
Q Consensus 499 ~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~ 578 (720)
+....+.. ........+++++.+.+... ++.++|.+..+++.+...|.+.....
T Consensus 188 e~~~il~~-------------~~~~~~~~~~~~~~~~l~~~-------------~~G~~r~l~~~l~~~~~~a~~~~~~~ 241 (338)
T 3pfi_A 188 ELALILQK-------------AALKLNKTCEEKAALEIAKR-------------SRSTPRIALRLLKRVRDFADVNDEEI 241 (338)
T ss_dssp HHHHHHHH-------------HHHHTTCEECHHHHHHHHHT-------------TTTCHHHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHH-------------HHHhcCCCCCHHHHHHHHHH-------------HCcCHHHHHHHHHHHHHHHHhhcCCc
Confidence 55433321 11123456888888877641 24567999999998888888888889
Q ss_pred CCHHhHHHHHHH
Q psy17703 579 VEVQDVDEAWRL 590 (720)
Q Consensus 579 V~~~Dv~~Ai~l 590 (720)
++.+++..++..
T Consensus 242 i~~~~~~~~~~~ 253 (338)
T 3pfi_A 242 ITEKRANEALNS 253 (338)
T ss_dssp ECHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 999999988753
No 12
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.57 E-value=6.6e-15 Score=155.42 Aligned_cols=226 Identities=18% Similarity=0.216 Sum_probs=140.3
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecCccccc-eeeecceeeec-CCceeeccccccC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKDPETRQ-MVLQTGALVLA-DSGVCCIDEFDKM 421 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~~~~~~-~~~~~G~l~la-d~gI~~IDEidkm 421 (720)
..++||+||||||||++++++++.+....+ .+.......+...... ...... ....+|.+..+ .+++++|||++++
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 128 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEV-DSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGST-THHHHHHHHTTTTCHHHHHHHCEEEEECGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccH-HHHHHHHHHHhhHHHhhccCCCEEEEEChhhc
Confidence 469999999999999999999998754322 1111111101110000 000000 01113343333 3789999999999
Q ss_pred ChHH------------HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 422 SDTT------------RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 422 ~~~~------------~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
+.+. ++.|+.+||...+.. +.+ ...+.++.+++++|+.... ...++++|++||+++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~-~~~--~~~~~~~~~i~~~~~~~~~---------~~~l~~~l~~R~~~~ 196 (310)
T 1ofh_A 129 CKKGEYSGADVSREGVQRDLLPLVEGSTVST-KHG--MVKTDHILFIASGAFQVAR---------PSDLIPELQGRLPIR 196 (310)
T ss_dssp SCCSSCCSSHHHHHHHHHHHHHHHHCCEEEE-TTE--EEECTTCEEEEEECCSSSC---------GGGSCHHHHHTCCEE
T ss_pred CccccccccchhHHHHHHHHHHHhcCCeEec-ccc--cccCCcEEEEEcCCcccCC---------cccCCHHHHhhCCce
Confidence 8765 889999999887664 222 2334678899988753211 125889999999988
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE 568 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~ 568 (720)
+.+.+++.++....+..+.. .++++|...++. .....+++++.+.|.++....+.... ...+|++..+++.+-
T Consensus 197 i~~~~~~~~~~~~il~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~-----~g~~R~l~~~l~~~~ 270 (310)
T 1ofh_A 197 VELTALSAADFERILTEPHA-SLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTE-----NIGARRLHTVMERLM 270 (310)
T ss_dssp EECCCCCHHHHHHHHHSSTT-CHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSC-----CCTTHHHHHHHHHHS
T ss_pred EEcCCcCHHHHHHHHHhhHH-HHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccccc-----ccCcHHHHHHHHHHH
Confidence 99998887776666654332 344444444432 33457999999999988765432111 123599998887655
Q ss_pred HHHHHcCC---C---CCCHHhHHHHHH
Q psy17703 569 AHAKMRYS---E---TVEVQDVDEAWR 589 (720)
Q Consensus 569 A~A~l~~~---~---~V~~~Dv~~Ai~ 589 (720)
+.+.++.. . .|+.+|+.+|+.
T Consensus 271 ~~~~~~~~~~~~~~~~i~~~~v~~~l~ 297 (310)
T 1ofh_A 271 DKISFSASDMNGQTVNIDAAYVADALG 297 (310)
T ss_dssp HHHHHHGGGCTTCEEEECHHHHHHHTC
T ss_pred HhhhcCCccccCCEEEEeeHHHHHHHH
Confidence 44333221 1 489999988854
No 13
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.57 E-value=4.1e-15 Score=157.80 Aligned_cols=213 Identities=17% Similarity=0.202 Sum_probs=138.3
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCcccccccc----ceeecCccccceeeecceeeecCCceeec
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLT----AYITKDPETRQMVLQTGALVLADSGVCCI 415 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glt----a~~~~~~~~~~~~~~~G~l~lad~gI~~I 415 (720)
.+.+|||+||||||||++++++++.+++. ++........ .+. .+..+...++......|.+..+++|++||
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~-~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~L 102 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE-SLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 102 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH-HHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEE
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCCh-HHHHHHhcCccccccCchhhhhcCHHHhcCCCEEEE
Confidence 57899999999999999999999987653 1111111000 000 00111122333334567778889999999
Q ss_pred cccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE-EEecC
Q psy17703 416 DEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI-FLLLD 494 (720)
Q Consensus 416 DEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli-~~l~d 494 (720)
||++.|+.+.|..|+.+|+++.+. +.|.....+.++.+|+|+|+... .....-.+.+.|++||..+ +.+++
T Consensus 103 DEi~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~riI~atn~~l~------~~v~~g~fr~~L~~Rl~~~~i~lPp 174 (304)
T 1ojl_A 103 DEIGDISPLMQVRLLRAIQEREVQ--RVGSNQTISVDVRLIAATHRDLA------EEVSAGRFRQDLYYRLNVVAIEMPS 174 (304)
T ss_dssp ESCTTCCHHHHHHHHHHHHSSBCC--BTTBCCCCBCCCEEEEEESSCHH------HHHHHTSSCHHHHHHHSSEEEECCC
T ss_pred eccccCCHHHHHHHHHHHhcCEee--ecCCcccccCCeEEEEecCccHH------HHHHhCCcHHHHHhhcCeeEEeccC
Confidence 999999999999999999998764 57777778889999999997521 1122235789999999733 44444
Q ss_pred CChHHHHHHHHhhcchhHHHHHHHHHHhh---cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHH
Q psy17703 495 PQSEQFDARLARHLDITVLRDYIAYAQEH---LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHA 571 (720)
Q Consensus 495 ~~~~~~d~~la~~i~~~~l~~~i~~ar~~---~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A 571 (720)
..+...| + ..+++.|+...... -.+.+++++.+.+..+ +|+.+.|+|+.+++-+...+
T Consensus 175 L~eR~ed--i-----~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~------------~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 175 LRQRRED--I-----PLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY------------DWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp SGGGGGG--H-----HHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHC
T ss_pred HHHhHhh--H-----HHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC------------CCCCCHHHHHHHHHHHHHhC
Confidence 3321111 0 11233344333222 1357899999888754 36677899999988766554
Q ss_pred HHcCCCCCCHHhHHHH
Q psy17703 572 KMRYSETVEVQDVDEA 587 (720)
Q Consensus 572 ~l~~~~~V~~~Dv~~A 587 (720)
....++.+|+...
T Consensus 236 ---~~~~i~~~~l~~~ 248 (304)
T 1ojl_A 236 ---TGEYISERELPLA 248 (304)
T ss_dssp ---CSSSBCGGGSCGG
T ss_pred ---CCCcccHHhhhhh
Confidence 2457888887544
No 14
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.55 E-value=1.1e-14 Score=150.97 Aligned_cols=211 Identities=18% Similarity=0.189 Sum_probs=127.4
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCccccccccc---eeecCccccceeeecceeeecCCceeecc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTA---YITKDPETRQMVLQTGALVLADSGVCCID 416 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta---~~~~~~~~~~~~~~~G~l~lad~gI~~ID 416 (720)
.+.++||+||||||||++++++++.+++. ++..........+.. +..+...++......|.+..+++|++|||
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lD 107 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLD 107 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHTTTSEEEEE
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhcCCcEEEEe
Confidence 46799999999999999999999987642 111111100000000 00011112222234566667889999999
Q ss_pred ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce-eEEEecCC
Q psy17703 417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD-LIFLLLDP 495 (720)
Q Consensus 417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd-li~~l~d~ 495 (720)
|++.++.+.|..|+.+|+++.+. +.|.....+.++.+|+|+|+.... ....-.+.++|++||+ +.+.+++.
T Consensus 108 Ei~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~~iI~atn~~~~~------~~~~~~~~~~L~~Rl~~~~i~lp~L 179 (265)
T 2bjv_A 108 ELATAPMMVQEKLLRVIEYGELE--RVGGSQPLQVNVRLVCATNADLPA------MVNEGTFRADLLDALAFDVVQLPPL 179 (265)
T ss_dssp SGGGSCHHHHHHHHHHHHHCEEC--CCCC--CEECCCEEEEEESSCHHH------HHHHTSSCHHHHHHHCSEEEECCCG
T ss_pred chHhcCHHHHHHHHHHHHhCCee--cCCCcccccCCeEEEEecCcCHHH------HHHcCCccHHHHHhhcCcEEeCCCh
Confidence 99999999999999999998763 566666777889999999975311 1112257899999997 44555544
Q ss_pred ChHHHHHHHHhhcchhHHHHHHHHHHhhc-C---CcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHH
Q psy17703 496 QSEQFDARLARHLDITVLRDYIAYAQEHL-S---PTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHA 571 (720)
Q Consensus 496 ~~~~~d~~la~~i~~~~l~~~i~~ar~~~-~---p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A 571 (720)
.+...| +. .+++.++....... . +.+++++.+.|..+ .|+.+.|+|+.+++.+-..+
T Consensus 180 ~~R~~d--i~-----~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~------------~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 180 RERESD--IM-----LMAEYFAIQMCREIKLPLFPGFTERARETLLNY------------RWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp GGCHHH--HH-----HHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHS------------CCTTHHHHHHHHHHHHHHHH
T ss_pred hhhhHH--HH-----HHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhC------------CCCCCHHHHHHHHHHHHHhC
Confidence 332111 11 12223333222211 1 47899998888643 35556799999887765544
Q ss_pred HHcCCCCCCHHhH
Q psy17703 572 KMRYSETVEVQDV 584 (720)
Q Consensus 572 ~l~~~~~V~~~Dv 584 (720)
. ...++.+|+
T Consensus 241 ~---~~~i~~~~l 250 (265)
T 2bjv_A 241 G---TSDYPLDDI 250 (265)
T ss_dssp C---CSSSCBCCC
T ss_pred C---CCcCcHHHc
Confidence 2 345555544
No 15
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.53 E-value=1.2e-14 Score=158.71 Aligned_cols=233 Identities=16% Similarity=0.169 Sum_probs=122.6
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
...|+||+||||||||++++++++.+....+. ........+..+..........+....|.+..+.+|++||||++++.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~ 150 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKIS 150 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHh
Confidence 46799999999999999999999988533221 11111101111110000001111122344556678999999999999
Q ss_pred hH--------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCC--------------C-------CCC
Q psy17703 423 DT--------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD--------------S-------QWN 467 (720)
Q Consensus 423 ~~--------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~--------------g-------~~~ 467 (720)
.+ .++.|+.+||.+.+.+...|.....+.++.+++++|... . +|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~ 230 (376)
T 1um8_A 151 RLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFT 230 (376)
T ss_dssp -------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCC
T ss_pred hhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCC
Confidence 88 899999999998887777766665555554444444310 0 111
Q ss_pred CC-c------ccc--------cccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHH-hhcCCcchHH
Q psy17703 468 TS-K------TII--------DNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQ-EHLSPTLSEE 531 (720)
Q Consensus 468 ~~-~------~~~--------~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar-~~~~p~ls~e 531 (720)
.. + .+. ....+.++|++||+.++.+.+...++....+.... ..++++|....+ ......++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 309 (376)
T 1um8_A 231 QEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPK-NALIKQYQQLFKMDEVDLIFEEE 309 (376)
T ss_dssp CSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSST-TCHHHHHHHHHHTTTCEEEECHH
T ss_pred chhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhH-HHHHHHHHHHHhhcCceEEECHH
Confidence 10 0 000 03358899999999899998888776665554321 123333333222 2234578999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCC------CCCCHHhHHHH
Q psy17703 532 ASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYS------ETVEVQDVDEA 587 (720)
Q Consensus 532 a~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~------~~V~~~Dv~~A 587 (720)
+.+.|..+..... ...|.|..++.-+-..+..+.. -.|+.+++..+
T Consensus 310 a~~~l~~~~~~~~----------~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 361 (376)
T 1um8_A 310 AIKEIAQLALERK----------TGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQ 361 (376)
T ss_dssp HHHHHHHHHHHTT----------CTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTS
T ss_pred HHHHHHHHhcccc----------cCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCC
Confidence 9999987743211 1237777766544333222211 14677666554
No 16
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.48 E-value=4.3e-13 Score=142.65 Aligned_cols=193 Identities=21% Similarity=0.226 Sum_probs=132.3
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCc-cccCCccccccccceeecCccccceeeeccee--eecCCceeecccccc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ-YTSGKGSSAVGLTAYITKDPETRQMVLQTGAL--VLADSGVCCIDEFDK 420 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~-~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l--~lad~gI~~IDEidk 420 (720)
...++||+||||||||++++++++.+.... +..+...... ++. .+.+ .+++++++||||++.
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~------------~~l---~~~l~~~~~~~~~l~lDEi~~ 101 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP------------GDL---AAILANSLEEGDILFIDEIHR 101 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH------------HHH---HHHHTTTCCTTCEEEETTTTS
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh------------HHH---HHHHHHhccCCCEEEEECCcc
Confidence 347899999999999999999998764322 1111111000 000 0011 135789999999999
Q ss_pred CChHHHHHHHHHHHhceEeeecc-----CeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCC
Q psy17703 421 MSDTTRSILHEVMEQQTLSIAKA-----GIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDP 495 (720)
Q Consensus 421 m~~~~~~~L~e~mE~~~vsi~k~-----g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~ 495 (720)
++...+..|+.+|+++.+.+--. ......+.++.+++|+|... .++++|++||+.++.+..+
T Consensus 102 l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~-------------~~~~~l~~R~~~~i~l~~~ 168 (324)
T 1hqc_A 102 LSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG-------------LITAPLLSRFGIVEHLEYY 168 (324)
T ss_dssp CCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCS-------------SCSCSTTTTCSCEEECCCC
T ss_pred cccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcc-------------cCCHHHHhcccEEEecCCC
Confidence 99999999999999987664211 11122234789999999653 4778899999888888888
Q ss_pred ChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcC
Q psy17703 496 QSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRY 575 (720)
Q Consensus 496 ~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~ 575 (720)
+.++....+. .+ .......+++++.+.+..+. +.++|.+..+++.+...|....
T Consensus 169 ~~~e~~~~l~---------~~----~~~~~~~~~~~~~~~l~~~~-------------~G~~r~l~~~l~~~~~~a~~~~ 222 (324)
T 1hqc_A 169 TPEELAQGVM---------RD----ARLLGVRITEEAALEIGRRS-------------RGTMRVAKRLFRRVRDFAQVAG 222 (324)
T ss_dssp CHHHHHHHHH---------HH----HHTTTCCCCHHHHHHHHHHS-------------CSCHHHHHHHHHHHTTTSTTTS
T ss_pred CHHHHHHHHH---------HH----HHhcCCCCCHHHHHHHHHHc-------------cCCHHHHHHHHHHHHHHHHHhc
Confidence 7665432222 11 12234568888888877541 2357999999988887777777
Q ss_pred CCCCCHHhHHHHHHH
Q psy17703 576 SETVEVQDVDEAWRL 590 (720)
Q Consensus 576 ~~~V~~~Dv~~Ai~l 590 (720)
...++.+|+..++..
T Consensus 223 ~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 223 EEVITRERALEALAA 237 (324)
T ss_dssp CSCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 888999999888653
No 17
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.46 E-value=2.1e-14 Score=156.07 Aligned_cols=213 Identities=15% Similarity=0.195 Sum_probs=114.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCcccc-CCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTS-GKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~-g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
...|+||+||||||||++++++++.+....+.. .......++.+..........+...++.+..+.+||+||||+|+++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~ 129 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhc
Confidence 357999999999999999999999875332211 1000000010000000000111122344445678999999999998
Q ss_pred hH--------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccC--------CC---------C-----CC
Q psy17703 423 DT--------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP--------CD---------S-----QW 466 (720)
Q Consensus 423 ~~--------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp--------~~---------g-----~~ 466 (720)
.+ .++.|+++||...+.+...+....-..++.+++|+|. .. + +|
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf 209 (363)
T 3hws_A 130 RKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGF 209 (363)
T ss_dssp CCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC----
T ss_pred ccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCc
Confidence 77 8999999999555545433433333334445555554 10 0 01
Q ss_pred CCC----------ccccccc--------CCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHH-hhcCCc
Q psy17703 467 NTS----------KTIIDNI--------RLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQ-EHLSPT 527 (720)
Q Consensus 467 ~~~----------~~~~~~~--------~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar-~~~~p~ 527 (720)
... ..+.+.+ .+.++|++|||.++.+.++..++....+..++ ..++++|..... ..+...
T Consensus 210 ~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~-~~l~~~~~~~~~~~~~~l~ 288 (363)
T 3hws_A 210 GATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPK-NALTKQYQALFNLEGVDLE 288 (363)
T ss_dssp --------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSST-TCHHHHHHHHHHTTTCEEE
T ss_pred cccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHH-HHHHHHHHHHHHhcCceEE
Confidence 000 0011111 28999999999888888887766655444322 123444443333 234567
Q ss_pred chHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH
Q psy17703 528 LSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567 (720)
Q Consensus 528 ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla 567 (720)
+++++.+.|.++-.. ++...|.|+.++.-+
T Consensus 289 ~~~~a~~~L~~~~~~----------~~~gaR~L~~~ie~~ 318 (363)
T 3hws_A 289 FRDEALDAIAKKAMA----------RKTGARGLRSIVEAA 318 (363)
T ss_dssp ECHHHHHHHHHHHHH----------TTCTTTTHHHHHHHH
T ss_pred ECHHHHHHHHHhhcC----------CccCchHHHHHHHHH
Confidence 899999999875222 122348888877643
No 18
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.43 E-value=7.2e-13 Score=140.10 Aligned_cols=205 Identities=17% Similarity=0.114 Sum_probs=118.3
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCccccccccceeecC--ccccc--eeeecceeeecCCceeeccc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTAYITKD--PETRQ--MVLQTGALVLADSGVCCIDE 417 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta~~~~~--~~~~~--~~~~~G~l~lad~gI~~IDE 417 (720)
.++||+||||||||++++++++.+.+. ++.................. ...+. ...-.+++..+.+++++|||
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDE 127 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDA 127 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEET
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeC
Confidence 589999999999999999999977432 11111000000000000000 00000 00011233344578999999
Q ss_pred cccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCC-------CCCCCCccccc------ccCCChhhhc
Q psy17703 418 FDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD-------SQWNTSKTIID------NIRLPHTLLS 484 (720)
Q Consensus 418 idkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~-------g~~~~~~~~~~------~~~l~~aLls 484 (720)
+++++++.++.|+++|+++.+... .+....+ .++.+|+|+|+.. +.......+.+ .-.++++|++
T Consensus 128 i~~l~~~~~~~Ll~~le~~~~~~~-~~~~~~~-~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 205 (311)
T 4fcw_A 128 IEKAHPDVFNILLQMLDDGRLTDS-HGRTVDF-RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN 205 (311)
T ss_dssp GGGSCHHHHHHHHHHHHHSEEECT-TSCEEEC-TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT
T ss_pred hhhcCHHHHHHHHHHHhcCEEEcC-CCCEEEC-CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh
Confidence 999999999999999999988742 2333332 3566999999831 11111112222 2258999999
Q ss_pred cceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHH-hhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHH
Q psy17703 485 RFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQ-EHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESL 563 (720)
Q Consensus 485 RFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar-~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~l 563 (720)
||+.++.+.++..++....+..+ ++++..... ......+++++.+.|.++-.. .+.+.|+|..+
T Consensus 206 R~~~~~~~~p~~~~~~~~i~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~gn~R~L~~~ 270 (311)
T 4fcw_A 206 RLDEIVVFRPLTKEQIRQIVEIQ-----MSYLRARLAEKRISLELTEAAKDFLAERGYD----------PVFGARPLRRV 270 (311)
T ss_dssp TCSEEEECCCCCHHHHHHHHHHH-----THHHHHHHHTTTCEEEECHHHHHHHHHHSCB----------TTTBTTTHHHH
T ss_pred cCCeEEEeCCCCHHHHHHHHHHH-----HHHHHHHHHhCCcEEEeCHHHHHHHHHhCCC----------ccCCchhHHHH
Confidence 99988888887765544433322 222211111 124567899999988864210 12345888887
Q ss_pred HHHH
Q psy17703 564 IRLS 567 (720)
Q Consensus 564 irla 567 (720)
++-+
T Consensus 271 i~~~ 274 (311)
T 4fcw_A 271 IQRE 274 (311)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 19
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.41 E-value=4.3e-13 Score=147.04 Aligned_cols=214 Identities=18% Similarity=0.240 Sum_probs=142.6
Q ss_pred CCCccEEEEcCCCCHHHHHHHHHHhhCCCCc--cc--cCCcccc----ccccceeecCccccceeeecceeeecCCceee
Q psy17703 343 PAEINILLCGDPGTSKSQLLSYVYDLVPRSQ--YT--SGKGSSA----VGLTAYITKDPETRQMVLQTGALVLADSGVCC 414 (720)
Q Consensus 343 pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~--~~--~g~~ss~----~glta~~~~~~~~~~~~~~~G~l~lad~gI~~ 414 (720)
+.+.+||+.|++||||+.++++++...++.. +. ....... ..+ .+..+...+|.....+|.+..|++|++|
T Consensus 158 ~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~el-fg~~~g~~tga~~~~~g~~~~a~~gtlf 236 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAEL-FGYEKGAFTGAVSSKEGFFELADGGTLF 236 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHH-HCBCTTSSTTCCSCBCCHHHHTTTSEEE
T ss_pred CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHh-cCCCCCCCCCcccccCCceeeCCCcEEE
Confidence 3678999999999999999999999887531 11 1000000 000 0111223444445578999999999999
Q ss_pred ccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE-EEec
Q psy17703 415 IDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI-FLLL 493 (720)
Q Consensus 415 IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli-~~l~ 493 (720)
|||++.|+.+.|..|+++|+++.+. +.|.....+.++.+|+|+|... ......-.+.+.|+.|+..+ +.++
T Consensus 237 ldei~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~rii~at~~~l------~~~~~~g~fr~dl~~rl~~~~i~lP 308 (387)
T 1ny5_A 237 LDEIGELSLEAQAKLLRVIESGKFY--RLGGRKEIEVNVRILAATNRNI------KELVKEGKFREDLYYRLGVIEIEIP 308 (387)
T ss_dssp EESGGGCCHHHHHHHHHHHHHSEEC--CBTCCSBEECCCEEEEEESSCH------HHHHHTTSSCHHHHHHHTTEEEECC
T ss_pred EcChhhCCHHHHHHHHHHHhcCcEE--eCCCCceeeccEEEEEeCCCCH------HHHHHcCCccHHHHHhhcCCeecCC
Confidence 9999999999999999999999875 4677777888999999999642 12223345788999999743 4444
Q ss_pred CCChHHHHHHHHhhcchhHHHHHHHH-HHhhc--CCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703 494 DPQSEQFDARLARHLDITVLRDYIAY-AQEHL--SPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH 570 (720)
Q Consensus 494 d~~~~~~d~~la~~i~~~~l~~~i~~-ar~~~--~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~ 570 (720)
+..+...| +. .+...|+.. +++.- .+.+++++.+.+..| +||.+.|+|+.+++-+-..
T Consensus 309 pLreR~~D--i~-----~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~------------~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 309 PLRERKED--II-----PLANHFLKKFSRKYAKEVEGFTKSAQELLLSY------------PWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp CGGGCHHH--HH-----HHHHHHHHHHHHHTTCCCCEECHHHHHHHHHS------------CCTTHHHHHHHHHHHHHHH
T ss_pred cchhcccc--HH-----HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC------------CCCcHHHHHHHHHHHHHHh
Confidence 33222111 11 122333332 22221 246899999888754 5788889999999876654
Q ss_pred HHHcCCCCCCHHhHHHH
Q psy17703 571 AKMRYSETVEVQDVDEA 587 (720)
Q Consensus 571 A~l~~~~~V~~~Dv~~A 587 (720)
+ ....++.+|+...
T Consensus 370 ~---~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 370 S---EGKFIDRGELSCL 383 (387)
T ss_dssp C---CSSEECHHHHHHH
T ss_pred C---CCCcCcHHHCcHh
Confidence 4 2357888887543
No 20
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.40 E-value=2.5e-13 Score=155.31 Aligned_cols=211 Identities=21% Similarity=0.196 Sum_probs=120.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCcc-ccccccceeecCccccceeeeccee----e--ecCCceeecc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGS-SAVGLTAYITKDPETRQMVLQTGAL----V--LADSGVCCID 416 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~s-s~~glta~~~~~~~~~~~~~~~G~l----~--lad~gI~~ID 416 (720)
.-++||+||||||||+|++++++.+.+... ....+. ....+... .+ ...+. .+|.+ . ...++++|||
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~-~~-~~ig~---~~~~~~~~~~~a~~~~~vl~lD 182 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGH-RR-TYVGA---MPGRIIQGMKKAGKLNPVFLLD 182 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------------------------CHHHHHHTTCSSSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhH-HH-HHhcc---CchHHHHHHHHhhccCCEEEEh
Confidence 458999999999999999999998854321 111110 00000000 00 00010 11111 1 1256799999
Q ss_pred ccccCChHH----HHHHHHHHHhceE-eeeccCeEEeec-CceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703 417 EFDKMSDTT----RSILHEVMEQQTL-SIAKAGIICQLN-ARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF 490 (720)
Q Consensus 417 Eidkm~~~~----~~~L~e~mE~~~v-si~k~g~~~~l~-a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~ 490 (720)
|+++++.+. ++.|+++|+.... .+...+.....+ .++.+|+|+|+.. .++++|++||+ ++
T Consensus 183 Eid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~-------------~l~~aL~~R~~-vi 248 (543)
T 3m6a_A 183 EIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA-------------TIPGPLRDRME-II 248 (543)
T ss_dssp ESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT-------------TSCHHHHHHEE-EE
T ss_pred hhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccc-------------cCCHHHHhhcc-ee
Confidence 999999874 4788898875432 222233333333 6789999999865 58999999997 56
Q ss_pred EecCCChHHHHHHHHhhcchhHHHHHHHHHH-hhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQ-EHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar-~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
.+..++.++....+..|+ ++++..... ......+++++.+.+...|. ++...|.|++.+.-+-.
T Consensus 249 ~~~~~~~~e~~~Il~~~l----~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~-----------~~~~vR~L~~~i~~~~~ 313 (543)
T 3m6a_A 249 NIAGYTEIEKLEIVKDHL----LPKQIKEHGLKKSNLQLRDQAILDIIRYYT-----------REAGVRSLERQLAAICR 313 (543)
T ss_dssp ECCCCCHHHHHHHHHHTH----HHHHHHHTTCCGGGCEECHHHHHHHHHHHC-----------CCSSSHHHHHHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHH----HHHHHHHcCCCcccccCCHHHHHHHHHhCC-----------hhhchhHHHHHHHHHHH
Confidence 787777766655555543 222222111 01133678999999887663 12234777765543322
Q ss_pred HHHHc------CCCCCCHHhHHHHHH
Q psy17703 570 HAKMR------YSETVEVQDVDEAWR 589 (720)
Q Consensus 570 ~A~l~------~~~~V~~~Dv~~Ai~ 589 (720)
.|..+ ....|+.+|+.+++.
T Consensus 314 ~aa~~~~~~~~~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 314 KAAKAIVAEERKRITVTEKNLQDFIG 339 (543)
T ss_dssp HHHHHHHTTCCSCCEECTTTTHHHHC
T ss_pred HHHHHHHhcCCcceecCHHHHHHHhC
Confidence 23222 334689999999865
No 21
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.40 E-value=7.5e-13 Score=139.94 Aligned_cols=201 Identities=17% Similarity=0.142 Sum_probs=121.9
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccce-eeecceeeecCCceeeccccccC-
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQM-VLQTGALVLADSGVCCIDEFDKM- 421 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~-~~~~G~l~lad~gI~~IDEidkm- 421 (720)
...|+||+||||||||++++++++.+....+.... ..+............+.. ....+.+..+.+++++|||+|.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~ 143 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKG--HLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLY 143 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSC--CEEEECGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCC--cEEEEcHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhc
Confidence 56799999999999999999999876321110000 000000000000000100 00122333456899999999977
Q ss_pred --------ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEec
Q psy17703 422 --------SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLL 493 (720)
Q Consensus 422 --------~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~ 493 (720)
+...+..|+..|++. +.++.+|+++|+.. ......++++|++||+.++.+.
T Consensus 144 ~~~~~~~~~~~~~~~Ll~~l~~~-------------~~~~~~i~~~~~~~--------~~~~~~~~~~l~~R~~~~i~~~ 202 (309)
T 3syl_A 144 RPDNERDYGQEAIEILLQVMENN-------------RDDLVVILAGYADR--------MENFFQSNPGFRSRIAHHIEFP 202 (309)
T ss_dssp CCC---CCTHHHHHHHHHHHHHC-------------TTTCEEEEEECHHH--------HHHHHHHSTTHHHHEEEEEEEC
T ss_pred cCCCcccccHHHHHHHHHHHhcC-------------CCCEEEEEeCChHH--------HHHHHhhCHHHHHhCCeEEEcC
Confidence 778889999999864 24678889988642 0111235699999999999999
Q ss_pred CCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHH
Q psy17703 494 DPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKM 573 (720)
Q Consensus 494 d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l 573 (720)
++..++....+.. ++. .....+++++.+.+.++....+.. .++.+.|.+..+++.+...+..
T Consensus 203 ~~~~~~~~~il~~---------~l~----~~~~~~~~~~~~~l~~~~~~~~~~-----~~~gn~r~l~~~l~~a~~~~~~ 264 (309)
T 3syl_A 203 DYSDEELFEIAGH---------MLD----DQNYQMTPEAETALRAYIGLRRNQ-----PHFANARSIRNALDRARLRQAN 264 (309)
T ss_dssp CCCHHHHHHHHHH---------HHH----HTTCEECHHHHHHHHHHHHHHTTS-----SSCCHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHH---------HHH----HcCCCCCHHHHHHHHHHHHHhccC-----CCCCcHHHHHHHHHHHHHHHHH
Confidence 8887665433332 211 135678999998888776555332 3445579999888866544433
Q ss_pred c----CCCCCCHHhHH
Q psy17703 574 R----YSETVEVQDVD 585 (720)
Q Consensus 574 ~----~~~~V~~~Dv~ 585 (720)
+ ....++.+|+.
T Consensus 265 r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 265 RLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHC---CEEHHHHH
T ss_pred HHHhccCCCCCHHHHh
Confidence 3 23455555543
No 22
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.38 E-value=7.9e-12 Score=135.42 Aligned_cols=140 Identities=19% Similarity=0.218 Sum_probs=97.1
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
.+++||||++.|+.+.++.|+..+|+....+ ....-+....++++++.. ....++++|++||..
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~----~ii~t~~~~~~i~~t~~~-----------~~~~l~~~l~sR~~~- 253 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAPV----LIMATNRGITRIRGTSYQ-----------SPHGIPIDLLDRLLI- 253 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCCE----EEEEESCSEEECBTSSCE-----------EETTCCHHHHTTEEE-
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCCe----eeeecccceeeeeccCCC-----------CcccCCHHHHhhccE-
Confidence 3699999999999999999999998643221 011111223444444211 112589999999986
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
+.+.+++.++....+.. + ++ .....+++++.+.+..+... .++|.+..+++.+..
T Consensus 254 i~~~~~~~~e~~~il~~---------~---~~-~~~~~~~~~~l~~l~~~~~~------------G~~r~~~~ll~~a~~ 308 (368)
T 3uk6_A 254 VSTTPYSEKDTKQILRI---------R---CE-EEDVEMSEDAYTVLTRIGLE------------TSLRYAIQLITAASL 308 (368)
T ss_dssp EEECCCCHHHHHHHHHH---------H---HH-HTTCCBCHHHHHHHHHHHHH------------SCHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHH---------H---HH-HcCCCCCHHHHHHHHHHhcC------------CCHHHHHHHHHHHHH
Confidence 67777766654433332 1 11 23456899998888765321 356999999999999
Q ss_pred HHHHcCCCCCCHHhHHHHHHH
Q psy17703 570 HAKMRYSETVEVQDVDEAWRL 590 (720)
Q Consensus 570 ~A~l~~~~~V~~~Dv~~Ai~l 590 (720)
.|..+.+..|+.+|+.+|+..
T Consensus 309 ~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 309 VCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHH
Confidence 999999999999999999875
No 23
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.37 E-value=7.1e-13 Score=138.56 Aligned_cols=197 Identities=19% Similarity=0.197 Sum_probs=119.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCccccccccceeecCccccceeeecceeeecCCceeeccccccC-
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM- 421 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm- 421 (720)
...++||+||||||||++++++++.+....+. .+. .+....... ........-........++++|||+|.+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~vl~iDEid~l~ 123 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGS-----ELVKKFIGE-GASLVKDIFKLAKEKAPSIIFIDEIDAIA 123 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGG-----GGCCCSTTH-HHHHHHHHHHHHHHTCSEEEEEETTHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehH-----HHHHhccch-HHHHHHHHHHHHHHcCCeEEEEECHHHhc
Confidence 35689999999999999999999987543221 110 000000000 0000000000001123469999999997
Q ss_pred ----------ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeE
Q psy17703 422 ----------SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLI 489 (720)
Q Consensus 422 ----------~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli 489 (720)
....+..+...++...- ...+.++.+|+|+|+.. .+++++++ ||+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~l~~ll~~~~~--------~~~~~~~~vI~ttn~~~-------------~l~~~l~~~~Rf~~~ 182 (285)
T 3h4m_A 124 AKRTDALTGGDREVQRTLMQLLAEMDG--------FDARGDVKIIGATNRPD-------------ILDPAILRPGRFDRI 182 (285)
T ss_dssp BCCSSSCCGGGGHHHHHHHHHHHHHHT--------TCSSSSEEEEEECSCGG-------------GBCHHHHSTTSEEEE
T ss_pred ccCccccCCccHHHHHHHHHHHHHhhC--------CCCCCCEEEEEeCCCch-------------hcCHHHcCCCcCCeE
Confidence 44556667666653210 01134688999999653 47899999 99999
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
+.+..|+.++....+..+ ++. ... -.+...+.+.. .. ...++|.++.+++.|..
T Consensus 183 i~~~~p~~~~r~~il~~~------------~~~-~~~-~~~~~~~~l~~----~~--------~g~~~~~i~~l~~~a~~ 236 (285)
T 3h4m_A 183 IEVPAPDEKGRLEILKIH------------TRK-MNL-AEDVNLEEIAK----MT--------EGCVGAELKAICTEAGM 236 (285)
T ss_dssp EECCCCCHHHHHHHHHHH------------HTT-SCB-CTTCCHHHHHH----HC--------TTCCHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHH------------Hhc-CCC-CCcCCHHHHHH----Hc--------CCCCHHHHHHHHHHHHH
Confidence 999888777655443321 111 110 01111222221 11 12357999999999999
Q ss_pred HHHHcCCCCCCHHhHHHHHHHHHH
Q psy17703 570 HAKMRYSETVEVQDVDEAWRLHRE 593 (720)
Q Consensus 570 ~A~l~~~~~V~~~Dv~~Ai~l~~~ 593 (720)
.|..+.++.|+.+|+.+|+.-+..
T Consensus 237 ~a~~~~~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 237 NAIRELRDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp HHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHhccCcCCHHHHHHHHHHHHh
Confidence 999999999999999999875543
No 24
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.7e-12 Score=141.25 Aligned_cols=187 Identities=18% Similarity=0.170 Sum_probs=114.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCC--ccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGK--GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~--~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
-.+||+||||||||+||+++|+.+....+. ++. .+..+|.+...++.-. ..+- .....|+||||+|.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF-----~~Ar---~~aP~IIFiDEiDai~ 254 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELF-----VMAR---EHAPSIIFMDEIDSIG 254 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHH-----HHHH---HTCSEEEEEESSSCCT
T ss_pred CceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHH-----HHHH---HhCCceEeeecchhhc
Confidence 479999999999999999999977543321 111 1111222211111100 0000 1125799999999874
Q ss_pred hH-----------H---HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703 423 DT-----------T---RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF 486 (720)
Q Consensus 423 ~~-----------~---~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF 486 (720)
.. . ...|+..|+.-. -..++.||||+|..+ .|++||++ ||
T Consensus 255 ~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~V~vIaATNrpd-------------~LDpAllRpGRf 310 (405)
T 4b4t_J 255 STRVEGSGGGDSEVQRTMLELLNQLDGFE-----------TSKNIKIIMATNRLD-------------ILDPALLRPGRI 310 (405)
T ss_dssp TSCSCSSSGGGGHHHHHHHHHHHHHHTTT-----------CCCCEEEEEEESCSS-------------SSCHHHHSTTSS
T ss_pred cCCCCCCCCCcHHHHHHHHHHHHhhhccC-----------CCCCeEEEeccCChh-------------hCCHhHcCCCcC
Confidence 21 1 233444444210 124578999999765 69999998 99
Q ss_pred eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703 487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR 565 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir 565 (720)
|..+.+..|..+.+...+..|. +. .+.+.+. .+.++.. .. ..|.+.+..+++
T Consensus 311 D~~I~i~lPd~~~R~~Il~~~~------------~~~~l~~dvd---l~~lA~~----------t~--G~SGADi~~l~~ 363 (405)
T 4b4t_J 311 DRKIEFPPPSVAARAEILRIHS------------RKMNLTRGIN---LRKVAEK----------MN--GCSGADVKGVCT 363 (405)
T ss_dssp CCEEECCCCCHHHHHHHHHHHH------------TTSBCCSSCC---HHHHHHH----------CC--SCCHHHHHHHHH
T ss_pred ceEEEcCCcCHHHHHHHHHHHh------------cCCCCCccCC---HHHHHHH----------CC--CCCHHHHHHHHH
Confidence 9999998887766655544321 11 1111111 1222211 11 245699999999
Q ss_pred HHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703 566 LSEAHAKMRYSETVEVQDVDEAWRLH 591 (720)
Q Consensus 566 la~A~A~l~~~~~V~~~Dv~~Ai~l~ 591 (720)
-|.-.|.-+.+..|+.+|+..|++-+
T Consensus 364 eA~~~Air~~~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 364 EAGMYALRERRIHVTQEDFELAVGKV 389 (405)
T ss_dssp HHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 88888877888999999999998643
No 25
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=99.36 E-value=8.9e-13 Score=137.16 Aligned_cols=63 Identities=33% Similarity=0.518 Sum_probs=55.2
Q ss_pred CCCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEEEEEec
Q psy17703 1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKID 65 (720)
Q Consensus 1 VP~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 65 (720)
||+|++|||++|++++||||+|+|||+|+|||||++.+..+. .++.+++|++|++|+||++.+
T Consensus 204 vp~G~~Prsi~v~l~~dLvd~~~PGDrV~vtGI~~~~~~~~~--~~~~~~~~~~yl~an~I~~~~ 266 (268)
T 2vl6_A 204 VPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPV--KRGSRAVFDIYMKVSSIEVSQ 266 (268)
T ss_dssp SCTTSCCCEEEEEEEGGGTTSSCTTCEEEEEEEEEEECSSTT--CCSSCCEEEEEEEEEEEEEC-
T ss_pred CCCCCCCcEEEEEEccCccCcccCCCEEEEEEEEEEeecccc--cCCCceEEEEEEEEEEEEEec
Confidence 699999999999999999999999999999999999886532 234578999999999998743
No 26
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.36 E-value=6e-13 Score=158.37 Aligned_cols=195 Identities=14% Similarity=0.138 Sum_probs=114.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHHH
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTR 426 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~ 426 (720)
++||+||||||||.+++++++.+.+. +. ..+.+..+...+........-.+++....++++||||+++++++.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~----~~--~~i~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~ 596 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGD----EE--SMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAHPDVF 596 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSC----TT--CEEEEEGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGSCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC----Cc--ceEEEechhcccccccccchhhHHHHhCCCeEEEEeCccccCHHHH
Confidence 79999999999999999999987321 00 0011111000000000000001222334678999999999999999
Q ss_pred HHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHHHh
Q psy17703 427 SILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLAR 506 (720)
Q Consensus 427 ~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~ 506 (720)
+.|+++|+++.++. .+.....+.++.+|+|+|.....++....... -.++++|++|||.++.+.++..++....+..
T Consensus 597 ~~Ll~~le~g~~~~--~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~-~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~ 673 (758)
T 3pxi_A 597 NILLQVLEDGRLTD--SKGRTVDFRNTILIMTSNVGASEKDKVMGELK-RAFRPEFINRIDEIIVFHSLEKKHLTEIVSL 673 (758)
T ss_dssp HHHHHHHHHSBCC-------CCBCTTCEEEEEESSSTTCCHHHHHHHH-HHSCHHHHTTSSEEEECC--CHHHHHHHHHH
T ss_pred HHHHHHhccCeEEc--CCCCEeccCCeEEEEeCCCChhhHHHHHHHHH-hhCCHHHHhhCCeEEecCCCCHHHHHHHHHH
Confidence 99999999998776 33344456789999999965432111100011 1388999999998888888877665544443
Q ss_pred hcchhHHHHHHHHHH-hhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703 507 HLDITVLRDYIAYAQ-EHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR 565 (720)
Q Consensus 507 ~i~~~~l~~~i~~ar-~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir 565 (720)
+ +.++..... ......+++++.+.|.+.-. +++...|.|+.+++
T Consensus 674 ~-----l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~----------~~~~~~R~L~~~i~ 718 (758)
T 3pxi_A 674 M-----SDQLTKRLKEQDLSIELTDAAKAKVAEEGV----------DLEYGARPLRRAIQ 718 (758)
T ss_dssp H-----HHHHHHHHHTTTCEEEECHHHHHHHHGGGC----------CTTTTTTTHHHHHH
T ss_pred H-----HHHHHHHHHhCCCeEEECHHHHHHHHHhCC----------CCCCCChHHHHHHH
Confidence 2 222211111 23456789999988864311 23444577777665
No 27
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.35 E-value=1.5e-12 Score=141.70 Aligned_cols=200 Identities=19% Similarity=0.238 Sum_probs=133.7
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCc-cc--cCCcccc---ccccceeecCccccceeeecceeeecCCceeeccc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ-YT--SGKGSSA---VGLTAYITKDPETRQMVLQTGALVLADSGVCCIDE 417 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~-~~--~g~~ss~---~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDE 417 (720)
.+.++|+.|++||||+.++++++...++.. +. ....... .....+..+...++....++|.+..|++|++||||
T Consensus 151 ~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlflde 230 (368)
T 3dzd_A 151 SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDE 230 (368)
T ss_dssp SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEET
T ss_pred cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCCeEEecC
Confidence 678999999999999999999999886631 11 0000000 00001122233445455578888999999999999
Q ss_pred cccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE-EEecCCC
Q psy17703 418 FDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI-FLLLDPQ 496 (720)
Q Consensus 418 idkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli-~~l~d~~ 496 (720)
++.|+.+.|..|+++|+++.+. +.|.....+.++.+|+|+|... ......-.+.+.|+.|+..+ +.+++..
T Consensus 231 i~~l~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~rii~at~~~l------~~~v~~g~fr~dL~~rl~~~~i~lPpLr 302 (368)
T 3dzd_A 231 VGELDQRVQAKLLRVLETGSFT--RLGGNQKIEVDIRVISATNKNL------EEEIKKGNFREDLYYRLSVFQIYLPPLR 302 (368)
T ss_dssp GGGSCHHHHHHHHHHHHHSEEC--CBTCCCBEECCCEEEEEESSCH------HHHHHTTSSCHHHHHHHTSEEEECCCGG
T ss_pred hhhCCHHHHHHHHHHHHhCCcc--cCCCCcceeeeeEEEEecCCCH------HHHHHcCCccHHHHHHhCCeEEeCCChh
Confidence 9999999999999999999875 4677777888999999999542 12233346888999999843 4444433
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHH-Hhh--cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703 497 SEQFDARLARHLDITVLRDYIAYA-QEH--LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH 570 (720)
Q Consensus 497 ~~~~d~~la~~i~~~~l~~~i~~a-r~~--~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~ 570 (720)
+...| + ..++..|+... ++. -.+.+++++.+.|..| +||.+.|+|+.+++.+-..
T Consensus 303 eR~~D--i-----~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~------------~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 303 ERGKD--V-----ILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQ------------EWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp GSTTH--H-----HHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTC------------CCTTHHHHHHHHHHHHHHT
T ss_pred hchhh--H-----HHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC------------CCCcHHHHHHHHHHHHHHh
Confidence 31111 0 11223333332 221 2356999999888743 5788889999988866443
No 28
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.33 E-value=1.3e-12 Score=145.52 Aligned_cols=187 Identities=16% Similarity=0.203 Sum_probs=112.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHH
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTT 425 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~ 425 (720)
.++||+||||||||++++.+++.+....+.-. ..+......+....... .....+.++++||||++.++.+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~----a~~~~~~~ir~~~~~a~----~~~~~~~~~iLfIDEI~~l~~~~ 122 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERIS----AVTSGVKEIREAIERAR----QNRNAGRRTILFVDEVHRFNKSQ 122 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE----TTTCCHHHHHHHHHHHH----HHHHTTCCEEEEEETTTCC----
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE----eccCCHHHHHHHHHHHH----HhhhcCCCcEEEEeChhhhCHHH
Confidence 48999999999999999999998754322110 00000000000000000 00012457899999999999999
Q ss_pred HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHHH
Q psy17703 426 RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLA 505 (720)
Q Consensus 426 ~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la 505 (720)
++.|+..||++. +.+|+|++... ...++++|++||. ++.+.+++.++....+.
T Consensus 123 q~~LL~~le~~~---------------v~lI~att~n~-----------~~~l~~aL~sR~~-v~~l~~l~~edi~~il~ 175 (447)
T 3pvs_A 123 QDAFLPHIEDGT---------------ITFIGATTENP-----------SFELNSALLSRAR-VYLLKSLSTEDIEQVLT 175 (447)
T ss_dssp --CCHHHHHTTS---------------CEEEEEESSCG-----------GGSSCHHHHTTEE-EEECCCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCc---------------eEEEecCCCCc-----------ccccCHHHhCcee-EEeeCCcCHHHHHHHHH
Confidence 999999999754 34566553221 1258899999997 66677777665443333
Q ss_pred hhcchhHHHHHHHHHHhh---cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHc--CCCCCC
Q psy17703 506 RHLDITVLRDYIAYAQEH---LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMR--YSETVE 580 (720)
Q Consensus 506 ~~i~~~~l~~~i~~ar~~---~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~--~~~~V~ 580 (720)
.. +...... ....+++++.+.+..+. +.+.|.+..+++.+...|... ....|+
T Consensus 176 ~~---------l~~~~~~~~~~~~~i~~~al~~L~~~~-------------~Gd~R~lln~Le~a~~~a~~~~~~~~~It 233 (447)
T 3pvs_A 176 QA---------MEDKTRGYGGQDIVLPDETRRAIAELV-------------NGDARRALNTLEMMADMAEVDDSGKRVLK 233 (447)
T ss_dssp HH---------HHCTTTSSTTSSEECCHHHHHHHHHHH-------------CSCHHHHHHHHHHHHHHSCBCTTSCEECC
T ss_pred HH---------HHHHhhhhccccCcCCHHHHHHHHHHC-------------CCCHHHHHHHHHHHHHhcccccCCCCccC
Confidence 21 1110000 23468999998888652 234699999988877766533 445799
Q ss_pred HHhHHHHHH
Q psy17703 581 VQDVDEAWR 589 (720)
Q Consensus 581 ~~Dv~~Ai~ 589 (720)
.+|+.+++.
T Consensus 234 ~e~v~~~l~ 242 (447)
T 3pvs_A 234 PELLTEIAG 242 (447)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998864
No 29
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.33 E-value=2.6e-12 Score=152.95 Aligned_cols=185 Identities=16% Similarity=0.157 Sum_probs=114.0
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccc----cccccceeecCccccc--eeeecceeeecCCceeeccccc
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSS----AVGLTAYITKDPETRQ--MVLQTGALVLADSGVCCIDEFD 419 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss----~~glta~~~~~~~~~~--~~~~~G~l~lad~gI~~IDEid 419 (720)
|+||+||||||||++++++++.+....+ .+..... ...+.+.. ..+.|. ...-.+++..++++|+||||++
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~--~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~ 567 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP--PGYVGFDQGGLLTDAVIKHPHAVLLLDEIE 567 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCC--SCSHHHHHTTHHHHHHHHCSSEEEEEETGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCC--CCCcCccccchHHHHHHhCCCcEEEEeCcc
Confidence 7999999999999999999998753221 1111100 00110000 000000 0001234445678999999999
Q ss_pred cCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCC-------CCCC---ccccccc--CCChhhhccce
Q psy17703 420 KMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQ-------WNTS---KTIIDNI--RLPHTLLSRFD 487 (720)
Q Consensus 420 km~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~-------~~~~---~~~~~~~--~l~~aLlsRFd 487 (720)
+++++.++.|+++||++.++.. .|....+ .++.+|+|+|+.... |... ..+.+.+ .++++|++|||
T Consensus 568 ~~~~~~~~~Ll~~le~~~~~~~-~g~~~~~-~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~ 645 (758)
T 1r6b_X 568 KAHPDVFNILLQVMDNGTLTDN-NGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLD 645 (758)
T ss_dssp GSCHHHHHHHHHHHHHSEEEET-TTEEEEC-TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCS
T ss_pred ccCHHHHHHHHHHhcCcEEEcC-CCCEEec-CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCC
Confidence 9999999999999999998873 3555554 679999999984321 1110 0111111 68999999999
Q ss_pred eEEEecCCChHHHHHHHHhhcchhHHHHHHH-HHHhhcCCcchHHHHHHHHHHH
Q psy17703 488 LIFLLLDPQSEQFDARLARHLDITVLRDYIA-YAQEHLSPTLSEEASQRLIQTY 540 (720)
Q Consensus 488 li~~l~d~~~~~~d~~la~~i~~~~l~~~i~-~ar~~~~p~ls~ea~~~l~~~y 540 (720)
.++.+.++..++....+..++ .++-. +....+...+++++.+.|.++.
T Consensus 646 ~~i~~~~l~~~~~~~i~~~~l-----~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 694 (758)
T 1r6b_X 646 NIIWFDHLSTDVIHQVVDKFI-----VELQVQLDQKGVSLEVSQEARNWLAEKG 694 (758)
T ss_dssp EEEECCCCCHHHHHHHHHHHH-----HHHHHHHHHTTEEEEECHHHHHHHHHHH
T ss_pred cceeeCCCCHHHHHHHHHHHH-----HHHHHHHHHCCcEEEeCHHHHHHHHHhC
Confidence 888888887765554444322 21111 1122345678999999988654
No 30
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.32 E-value=4.1e-12 Score=138.62 Aligned_cols=189 Identities=17% Similarity=0.210 Sum_probs=114.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCC--ccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGK--GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~--~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
.-.|||+||||||||+||+++|..+....+. ++. .+..+|.+...++.-. ..+. .....|+||||+|.+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF-----~~Ar---~~aP~IIfiDEiDai 287 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIF-----KVAG---ENAPSIVFIDEIDAI 287 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHH-----HHHH---HTCSEEEEEEEESSS
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHH-----HHHH---hcCCcEEEEehhhhh
Confidence 3579999999999999999999977543331 111 1111121111111100 0000 112579999999987
Q ss_pred Ch-----------HHHH---HHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--c
Q psy17703 422 SD-----------TTRS---ILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--R 485 (720)
Q Consensus 422 ~~-----------~~~~---~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--R 485 (720)
.. .... .|+..|+.. .-..++.||||+|..+ .|++||++ |
T Consensus 288 ~~~R~~~~~~~~~~~~~~l~~LL~~lDg~-----------~~~~~ViVIaATNrpd-------------~LDpALlRpGR 343 (437)
T 4b4t_I 288 GTKRYDSNSGGEREIQRTMLELLNQLDGF-----------DDRGDVKVIMATNKIE-------------TLDPALIRPGR 343 (437)
T ss_dssp SCCCSCSSCSSCCHHHHHHHHHHHHHHHC-----------CCSSSEEEEEEESCST-------------TCCTTSSCTTT
T ss_pred cccCCCCCCCccHHHHHHHHHHHHHhhCc-----------CCCCCEEEEEeCCChh-------------hcCHHHhcCCc
Confidence 32 1222 344444321 1134578999999765 69999998 9
Q ss_pred ceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHH
Q psy17703 486 FDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLI 564 (720)
Q Consensus 486 Fdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~li 564 (720)
||..+.+..|..+.+...+..|. +. .+.+.+. .+.|+. . .. ..|.+.++.++
T Consensus 344 fD~~I~v~lPd~~~R~~Il~~~l------------~~~~l~~dvd---l~~LA~----~------T~--GfSGADI~~l~ 396 (437)
T 4b4t_I 344 IDRKILFENPDLSTKKKILGIHT------------SKMNLSEDVN---LETLVT----T------KD--DLSGADIQAMC 396 (437)
T ss_dssp EEEEECCCCCCHHHHHHHHHHHH------------TTSCBCSCCC---HHHHHH----H------CC--SCCHHHHHHHH
T ss_pred eeEEEEcCCcCHHHHHHHHHHHh------------cCCCCCCcCC---HHHHHH----h------CC--CCCHHHHHHHH
Confidence 99999888887666555444322 11 1111111 122221 1 11 24569999999
Q ss_pred HHHHHHHHHcCCCCCCHHhHHHHHHHHH
Q psy17703 565 RLSEAHAKMRYSETVEVQDVDEAWRLHR 592 (720)
Q Consensus 565 rla~A~A~l~~~~~V~~~Dv~~Ai~l~~ 592 (720)
+-|.-.|..+.+..|+.+|+..|++-..
T Consensus 397 ~eA~~~Air~~~~~It~eDf~~Al~rv~ 424 (437)
T 4b4t_I 397 TEAGLLALRERRMQVTAEDFKQAKERVM 424 (437)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHHHHh
Confidence 9988888888889999999999987443
No 31
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.30 E-value=3.3e-11 Score=129.38 Aligned_cols=192 Identities=19% Similarity=0.244 Sum_probs=124.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCc-cccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQ-YTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT 424 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~-~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~ 424 (720)
-|++|+||||+|||+|++.+++.+.... +++|......+ ..... .. .+....|++|||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~---------~l~~~-~~----~~~~~~v~~iDE~~~l~~~ 117 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG---------DMAAI-LT----SLERGDVLFIDEIHRLNKA 117 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHH---------HHHHH-HH----HCCTTCEEEEETGGGCCHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHH---------HHHHH-HH----HccCCCEEEEcchhhcCHH
Confidence 4799999999999999999999774321 12221110000 00000 00 0224679999999999998
Q ss_pred HHHHHHHHHHhceEeee--cc---CeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHH
Q psy17703 425 TRSILHEVMEQQTLSIA--KA---GIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQ 499 (720)
Q Consensus 425 ~~~~L~e~mE~~~vsi~--k~---g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~ 499 (720)
.++.|+..|+...+.+. +. ........++.+++++|+.. .|++++++||.+.+.+.++..++
T Consensus 118 ~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~-------------~Ls~~l~sR~~l~~~Ld~~~~~~ 184 (334)
T 1in4_A 118 VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG-------------LLSSPLRSRFGIILELDFYTVKE 184 (334)
T ss_dssp HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGG-------------GSCHHHHTTCSEEEECCCCCHHH
T ss_pred HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcc-------------cCCHHHHHhcCceeeCCCCCHHH
Confidence 88999999987643210 00 01111223577777777542 58999999999887887776655
Q ss_pred HHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCC
Q psy17703 500 FDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETV 579 (720)
Q Consensus 500 ~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V 579 (720)
....+.+ ..+...-.+++++.+.|.+. ...++|.+..+++.+...|.++.+..|
T Consensus 185 l~~iL~~-------------~~~~~~~~~~~~~~~~ia~~-------------~~G~~R~a~~ll~~~~~~a~~~~~~~I 238 (334)
T 1in4_A 185 LKEIIKR-------------AASLMDVEIEDAAAEMIAKR-------------SRGTPRIAIRLTKRVRDMLTVVKADRI 238 (334)
T ss_dssp HHHHHHH-------------HHHHTTCCBCHHHHHHHHHT-------------STTCHHHHHHHHHHHHHHHHHHTCSSB
T ss_pred HHHHHHH-------------HHHHcCCCcCHHHHHHHHHh-------------cCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 4333321 22223456788887777532 124679999999999999999888899
Q ss_pred CHHhHHHHHHH
Q psy17703 580 EVQDVDEAWRL 590 (720)
Q Consensus 580 ~~~Dv~~Ai~l 590 (720)
+.+++.+|+..
T Consensus 239 t~~~v~~al~~ 249 (334)
T 1in4_A 239 NTDIVLKTMEV 249 (334)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999999774
No 32
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.29 E-value=3.9e-12 Score=140.18 Aligned_cols=187 Identities=20% Similarity=0.165 Sum_probs=112.4
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCC--ccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGK--GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~--~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
.-.|||+||||||||++++++|..+....+. ++. .+..+|.+...++.-. ..+- .....|+||||+|.+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF-----~~A~---~~aP~IifiDEiDal 286 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAF-----ALAK---EKAPTIIFIDELDAI 286 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHH-----HHHH---HHCSEEEEEECTHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHH-----HHHH---hcCCeEEeecchhhh
Confidence 3589999999999999999999977543321 111 1111121111111000 0000 113579999999875
Q ss_pred Ch-----------HHH---HHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--c
Q psy17703 422 SD-----------TTR---SILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--R 485 (720)
Q Consensus 422 ~~-----------~~~---~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--R 485 (720)
.. ... ..|+..|+.- . -..++.||||+|..+ .|++||++ |
T Consensus 287 ~~~R~~~~~~~~~~~~~~~~~lL~~ldg~---------~--~~~~ViVIaaTNrp~-------------~LD~AllRpGR 342 (434)
T 4b4t_M 287 GTKRFDSEKSGDREVQRTMLELLNQLDGF---------S--SDDRVKVLAATNRVD-------------VLDPALLRSGR 342 (434)
T ss_dssp HCCCSSGGGGTTHHHHHHHHHHHHHHTTS---------C--SSCSSEEEEECSSCC-------------CCCTTTCSTTS
T ss_pred hhccCCCCCCCchHHHHHHHHHHHHhhcc---------C--CCCCEEEEEeCCCch-------------hcCHhHhcCCc
Confidence 21 112 2344444321 0 124578999999765 69999999 9
Q ss_pred ceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703 486 FDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR 565 (720)
Q Consensus 486 Fdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir 565 (720)
||..+.+..|..+.+...+..|. . +..+.+.+. .+.|+. + . -..|.+.+..+++
T Consensus 343 fD~~I~i~lPd~~~R~~Il~~~~---------~--~~~~~~dvd---l~~lA~-----~-----t--~G~sGADi~~l~~ 396 (434)
T 4b4t_M 343 LDRKIEFPLPSEDSRAQILQIHS---------R--KMTTDDDIN---WQELAR-----S-----T--DEFNGAQLKAVTV 396 (434)
T ss_dssp EEEEEECCCCCHHHHHHHHHHHH---------H--HSCBCSCCC---HHHHHH-----H-----C--SSCCHHHHHHHHH
T ss_pred eeEEEEeCCcCHHHHHHHHHHHh---------c--CCCCCCcCC---HHHHHH-----h-----C--CCCCHHHHHHHHH
Confidence 99999998887666554443221 1 111222221 122221 0 0 1245699999999
Q ss_pred HHHHHHHHcCCCCCCHHhHHHHHH
Q psy17703 566 LSEAHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 566 la~A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
-|.-.|.-+.+..|+.+|+.+|+.
T Consensus 397 eA~~~a~r~~~~~i~~~Df~~Al~ 420 (434)
T 4b4t_M 397 EAGMIALRNGQSSVKHEDFVEGIS 420 (434)
T ss_dssp HHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHH
Confidence 888888778889999999999975
No 33
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.28 E-value=1.4e-11 Score=135.93 Aligned_cols=187 Identities=17% Similarity=0.121 Sum_probs=113.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCC--ccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGK--GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~--~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
-.|||+||||||||+|++++|..+....+. ++. .+...|.+...++.-. ..+ ......|+||||+|.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F-----~~A---~~~~P~IifiDEiDai~ 287 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMF-----AYA---KEHEPCIIFMDEVDAIG 287 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHH-----HHH---HHSCSEEEEEECCCSSS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHH-----HHH---HhcCCceeeeecccccc
Confidence 579999999999999999999977543331 111 1111111111111000 000 01135799999999863
Q ss_pred hH-----------H---HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcc--c
Q psy17703 423 DT-----------T---RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSR--F 486 (720)
Q Consensus 423 ~~-----------~---~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsR--F 486 (720)
.. . ...|+..|+... -..++.||||||..+ .|++||++| |
T Consensus 288 ~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~vivI~ATNrp~-------------~LDpAllRpGRf 343 (437)
T 4b4t_L 288 GRRFSEGTSADREIQRTLMELLTQMDGFD-----------NLGQTKIIMATNRPD-------------TLDPALLRPGRL 343 (437)
T ss_dssp CCCSSSCCSSTTHHHHHHHHHHHHHHSSS-----------CTTSSEEEEEESSTT-------------SSCTTTTSTTSE
T ss_pred cccccCCCCcchHHHHHHHHHHHHhhccc-----------CCCCeEEEEecCCch-------------hhCHHHhCCCcc
Confidence 21 1 234555554211 124578999999765 589999984 9
Q ss_pred eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703 487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR 565 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir 565 (720)
|..+.+..|..+.+...+..|. +. ...+.+. .+.++. ... ..|.+.+..+++
T Consensus 344 D~~I~i~lPd~~~R~~Il~~~~------------~~~~~~~d~d---l~~lA~----------~t~--G~sGADi~~l~~ 396 (437)
T 4b4t_L 344 DRKVEIPLPNEAGRLEIFKIHT------------AKVKKTGEFD---FEAAVK----------MSD--GFNGADIRNCAT 396 (437)
T ss_dssp EEEECCCCCCHHHHHHHHHHHH------------HTSCBCSCCC---HHHHHH----------TCC--SCCHHHHHHHHH
T ss_pred ceeeecCCcCHHHHHHHHHHHh------------cCCCCCcccC---HHHHHH----------hCC--CCCHHHHHHHHH
Confidence 9999998887666554443221 11 1112111 122211 111 245699999999
Q ss_pred HHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703 566 LSEAHAKMRYSETVEVQDVDEAWRLH 591 (720)
Q Consensus 566 la~A~A~l~~~~~V~~~Dv~~Ai~l~ 591 (720)
-|.-.|..+.+..|+.+|+..|++-+
T Consensus 397 eA~~~air~~~~~i~~~d~~~Al~~v 422 (437)
T 4b4t_L 397 EAGFFAIRDDRDHINPDDLMKAVRKV 422 (437)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 88888888888999999999998643
No 34
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.28 E-value=2.2e-11 Score=133.54 Aligned_cols=188 Identities=16% Similarity=0.157 Sum_probs=110.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCccccccccceeecCcccccee-eeccee---eecCCceeeccccc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYITKDPETRQMV-LQTGAL---VLADSGVCCIDEFD 419 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~~~~~~~~~~~-~~~G~l---~lad~gI~~IDEid 419 (720)
..++||+||||||||++++++++.+...++. ++.. +... ..+... .....+ .....+|+||||+|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~-----l~~~-----~~g~~~~~~~~~~~~a~~~~~~il~iDEid 217 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS-----LTSK-----YVGEGEKLVRALFAVARELQPSIIFIDQVD 217 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC-----C------------CHHHHHHHHHHHHHSSSEEEEEETGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH-----hhcc-----ccchHHHHHHHHHHHHHhcCCeEEEEECch
Confidence 4699999999999999999999987543221 1111 0000 000000 000000 01235799999999
Q ss_pred cCC-----------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703 420 KMS-----------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL 488 (720)
Q Consensus 420 km~-----------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl 488 (720)
.+. ...+..|+..|+.. ....+.++.||||+|+.. .+++++++||+.
T Consensus 218 ~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~v~vI~atn~~~-------------~l~~~l~~R~~~ 275 (389)
T 3vfd_A 218 SLLCERREGEHDASRRLKTEFLIEFDGV---------QSAGDDRVLVMGATNRPQ-------------ELDEAVLRRFIK 275 (389)
T ss_dssp GGC--------CTHHHHHHHHHHHHHHH---------C-----CEEEEEEESCGG-------------GCCHHHHTTCCE
T ss_pred hhcccCCCccchHHHHHHHHHHHHhhcc---------cccCCCCEEEEEecCCch-------------hcCHHHHcCcce
Confidence 883 33455666666532 222346789999999754 588999999998
Q ss_pred EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE 568 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~ 568 (720)
.+.+..|+.++....+.. ++. .....++++..+.+.... -..+.+.+..|++-+.
T Consensus 276 ~i~i~~p~~~~r~~il~~------------~~~-~~~~~l~~~~~~~la~~~------------~g~~~~~l~~L~~~a~ 330 (389)
T 3vfd_A 276 RVYVSLPNEETRLLLLKN------------LLC-KQGSPLTQKELAQLARMT------------DGYSGSDLTALAKDAA 330 (389)
T ss_dssp EEECCCCCHHHHHHHHHH------------HHT-TSCCCSCHHHHHHHHHHT------------TTCCHHHHHHHHHHHT
T ss_pred EEEcCCcCHHHHHHHHHH------------HHH-hcCCCCCHHHHHHHHHHc------------CCCCHHHHHHHHHHHH
Confidence 888877776654433321 111 123456666666555321 0134578888888776
Q ss_pred HHHHHcC------------CCCCCHHhHHHHHH
Q psy17703 569 AHAKMRY------------SETVEVQDVDEAWR 589 (720)
Q Consensus 569 A~A~l~~------------~~~V~~~Dv~~Ai~ 589 (720)
..|.-++ ...|+.+|+..|+.
T Consensus 331 ~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~ 363 (389)
T 3vfd_A 331 LGPIRELKPEQVKNMSASEMRNIRLSDFTESLK 363 (389)
T ss_dssp THHHHTSCCC---CCSSSCCCCCCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhccchhhcCCcCHHHHHHHHH
Confidence 6655442 34678888888764
No 35
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.28 E-value=6.5e-12 Score=138.28 Aligned_cols=188 Identities=17% Similarity=0.126 Sum_probs=113.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCC--ccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGK--GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~--~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
.-.|||+||||||||+|++++|+.+....+. ++. .+..+|.+...++.-. ..+- .....|+||||+|.+
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF-----~~Ar---~~aP~IIfiDEiDai 314 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELF-----EMAR---TKKACIIFFDEIDAV 314 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHH-----HHHH---HTCSEEEEEECCTTT
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHH-----HHHH---hcCCceEeecccccc
Confidence 3589999999999999999999977543321 111 1111222111111100 0000 112569999999987
Q ss_pred ChH-----------HH---HHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--c
Q psy17703 422 SDT-----------TR---SILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--R 485 (720)
Q Consensus 422 ~~~-----------~~---~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--R 485 (720)
... .+ ..++..|+.. .-..++.||||+|... .|++||++ |
T Consensus 315 ~~~R~~~~~~~~~~~~~~l~~lL~~lDg~-----------~~~~~ViVIaATNrpd-------------~LDpALlRpGR 370 (467)
T 4b4t_H 315 GGARFDDGAGGDNEVQRTMLELITQLDGF-----------DPRGNIKVMFATNRPN-------------TLDPALLRPGR 370 (467)
T ss_dssp SBCCSSSSCGGGGHHHHHHHHHHHHHHSS-----------CCTTTEEEEEECSCTT-------------SBCHHHHSTTT
T ss_pred cccccCcCCCccHHHHHHHHHHHHHhhcc-----------CCCCcEEEEeCCCCcc-------------cCChhhhcccc
Confidence 421 12 2333444311 1134678999999765 68999998 9
Q ss_pred ceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHH
Q psy17703 486 FDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLI 564 (720)
Q Consensus 486 Fdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~li 564 (720)
||..+.+..|..+.+.+.+..|. +. .+.+.+. .+.|.. . .. ..|.+.|.+++
T Consensus 371 FD~~I~i~lPd~~~R~~Ilk~~l------------~~~~l~~dvd---l~~LA~----~------T~--GfSGADI~~l~ 423 (467)
T 4b4t_H 371 IDRKVEFSLPDLEGRANIFRIHS------------KSMSVERGIR---WELISR----L------CP--NSTGAELRSVC 423 (467)
T ss_dssp CCEEECCCCCCHHHHHHHHHHHH------------TTSCBCSSCC---HHHHHH----H------CC--SCCHHHHHHHH
T ss_pred ccEEEEeCCcCHHHHHHHHHHHh------------cCCCCCCCCC---HHHHHH----H------CC--CCCHHHHHHHH
Confidence 99999998887766555444321 11 1122221 122221 1 11 13569999999
Q ss_pred HHHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703 565 RLSEAHAKMRYSETVEVQDVDEAWRLH 591 (720)
Q Consensus 565 rla~A~A~l~~~~~V~~~Dv~~Ai~l~ 591 (720)
+-|.-.|..+.+..|+.+|+..|+.-+
T Consensus 424 ~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 424 TEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 988888888889999999999998643
No 36
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.27 E-value=5.4e-11 Score=133.14 Aligned_cols=141 Identities=20% Similarity=0.229 Sum_probs=96.4
Q ss_pred ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703 411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF 490 (720)
Q Consensus 411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~ 490 (720)
+|++|||++.|+.+.+++|+.+||+....+ -+..+ +....+|+++| .+.....++++++|||.. +
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~---~il~t-n~~~~~i~~~~----------~~~~~~~l~~~i~sR~~~-~ 361 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPI---VIFAS-NRGNCVIRGTE----------DITSPHGIPLDLLDRVMI-I 361 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCE---EEEEE-CCSEEECBTTS----------SCEEETTCCHHHHTTEEE-E
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCE---EEEec-CCccccccccc----------cccccccCChhHHhhcce-e
Confidence 699999999999999999999999642110 00001 12222333333 112233699999999976 5
Q ss_pred EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703 491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH 570 (720)
Q Consensus 491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~ 570 (720)
.+.+++.++....|.. ..+.....+++++.+.+..... ..++|....+++.|.+.
T Consensus 362 ~~~~~~~~e~~~iL~~-------------~~~~~~~~~~~~~~~~i~~~a~------------~g~~r~a~~ll~~a~~~ 416 (456)
T 2c9o_A 362 RTMLYTPQEMKQIIKI-------------RAQTEGINISEEALNHLGEIGT------------KTTLRYSVQLLTPANLL 416 (456)
T ss_dssp ECCCCCHHHHHHHHHH-------------HHHHHTCCBCHHHHHHHHHHHH------------HSCHHHHHHTHHHHHHH
T ss_pred eCCCCCHHHHHHHHHH-------------HHHHhCCCCCHHHHHHHHHHcc------------CCCHHHHHHHHHHHHHH
Confidence 7777776655444332 1111234688888887775431 12579999999999999
Q ss_pred HHHcCCCCCCHHhHHHHHHHH
Q psy17703 571 AKMRYSETVEVQDVDEAWRLH 591 (720)
Q Consensus 571 A~l~~~~~V~~~Dv~~Ai~l~ 591 (720)
|.++++..|+.+|+.+|+.++
T Consensus 417 A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 417 AKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp HHHTTCSSBCHHHHHHHHHHS
T ss_pred HhhcCCCccCHHHHHHHHHHh
Confidence 999999999999999998874
No 37
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.26 E-value=1.9e-10 Score=136.90 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=46.1
Q ss_pred cccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCC
Q psy17703 658 VLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC 714 (720)
Q Consensus 658 v~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~ 714 (720)
..+..++.++||++++..+....+++.|++..+.... |....+ .++.|++++||-
T Consensus 554 ~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~-g~~~~~-~~~~iI~tsN~~ 608 (758)
T 1r6b_X 554 IKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNN-GRKADF-RNVVLVMTTNAG 608 (758)
T ss_dssp HHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETT-TEEEEC-TTEEEEEEECSS
T ss_pred HhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCC-CCEEec-CCeEEEEecCcc
Confidence 3455678899999999999999999999999988754 666665 789999999983
No 38
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.26 E-value=3.1e-11 Score=124.25 Aligned_cols=186 Identities=19% Similarity=0.183 Sum_probs=111.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCC-ccccCCccccccccceeecCccccceeeecceeeec---CCceeecccccc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRS-QYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLA---DSGVCCIDEFDK 420 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~la---d~gI~~IDEidk 420 (720)
..++||+||||||||++++++++.+... ++.++..... . ...... ... .+.+..+ ..++++|||+|.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~--~---~~~~~~-~~~---~~~~~~a~~~~~~il~iDeid~ 115 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE--M---FVGVGA-SRV---RDMFEQAKKAAPCIIFIDEIDA 115 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT--S---CCCCCH-HHH---HHHHHHHHTTCSEEEEETTHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH--H---hhhhhH-HHH---HHHHHHHHHcCCeeehhhhhhh
Confidence 3479999999999999999999977532 2222211100 0 000000 000 0001111 236999999987
Q ss_pred CChH--------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--
Q psy17703 421 MSDT--------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS-- 484 (720)
Q Consensus 421 m~~~--------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls-- 484 (720)
+... ....++..|+.. .-+.++.+|+|+|... .+++++++
T Consensus 116 l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~~~vI~~tn~~~-------------~l~~~l~r~~ 171 (257)
T 1lv7_A 116 VGRQRGAGLGGGHDEREQTLNQMLVEMDGF-----------EGNEGIIVIAATNRPD-------------VLDPALLRPG 171 (257)
T ss_dssp HTCCCSTTSCCTTCHHHHHHHHHHHHHHTC-----------CSSSCEEEEEEESCTT-------------TSCGGGGSTT
T ss_pred hccCCCCCcCCCchHHHHHHHHHHHHhhCc-----------ccCCCEEEEEeeCCch-------------hCCHHHcCCC
Confidence 7542 223344444421 1135688999999764 47888888
Q ss_pred cceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHH-HHHHHHHHHHhhhcCCCCCCcc-cCHHHHHH
Q psy17703 485 RFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEA-SQRLIQTYVDMRKLGAGRGRIS-AYPRQLES 562 (720)
Q Consensus 485 RFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea-~~~l~~~y~~lr~~~~~~~~~~-~t~R~le~ 562 (720)
||+..+.+..|+.+++...+.. ++ +. . .+++++ ...+.. .++ .++|+++.
T Consensus 172 rf~~~i~i~~P~~~~r~~il~~---------~~---~~--~-~l~~~~~~~~la~-------------~~~G~~~~dl~~ 223 (257)
T 1lv7_A 172 RFDRQVVVGLPDVRGREQILKV---------HM---RR--V-PLAPDIDAAIIAR-------------GTPGFSGADLAN 223 (257)
T ss_dssp SSCEEEECCCCCHHHHHHHHHH---------HH---TT--S-CBCTTCCHHHHHH-------------TCTTCCHHHHHH
T ss_pred cCCeEEEeCCCCHHHHHHHHHH---------HH---hc--C-CCCccccHHHHHH-------------HcCCCCHHHHHH
Confidence 9998888877766554333321 11 11 1 122222 111110 122 36799999
Q ss_pred HHHHHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703 563 LIRLSEAHAKMRYSETVEVQDVDEAWRLH 591 (720)
Q Consensus 563 lirla~A~A~l~~~~~V~~~Dv~~Ai~l~ 591 (720)
+++-|...|..+.+..|+.+|+.+|+..+
T Consensus 224 l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 224 LVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 99999999999888999999999998743
No 39
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.3e-11 Score=135.96 Aligned_cols=186 Identities=19% Similarity=0.225 Sum_probs=110.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCC--ccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGK--GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~--~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
-.+||+||||||||++++++|+.+....+. ++. .+..+|.+...++.-.. .+. .....|+||||+|.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~-----~A~---~~aP~IifiDEiD~i~ 278 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFR-----LAR---ENAPSIIFIDEVDSIA 278 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHH-----HHH---HTCSEEEEEECTHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHH-----HHH---HcCCCeeechhhhhhh
Confidence 369999999999999999999987654332 111 11112222111111000 000 1125799999998642
Q ss_pred h-----------H---HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703 423 D-----------T---TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF 486 (720)
Q Consensus 423 ~-----------~---~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF 486 (720)
. . ....|+..|+.-. -..++.||||||..+ .|++||++ ||
T Consensus 279 ~~R~~~~~~~~~~~~r~l~~lL~~ldg~~-----------~~~~v~vI~aTN~~~-------------~LD~AllRpGRf 334 (428)
T 4b4t_K 279 TKRFDAQTGSDREVQRILIELLTQMDGFD-----------QSTNVKVIMATNRAD-------------TLDPALLRPGRL 334 (428)
T ss_dssp CSCSSSCSCCCCHHHHHHHHHHHHHHHSC-----------SSCSEEEEEEESCSS-------------SCCHHHHSSSSE
T ss_pred ccccCCCCCCChHHHHHHHHHHHHhhCCC-----------CCCCEEEEEecCChh-------------hcChhhhcCCcc
Confidence 1 1 2344555554311 123578999999665 69999998 99
Q ss_pred eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703 487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR 565 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir 565 (720)
|..+.++++|+.+....|-+ .+ .+. .+.+.+. .+.++.. . . ..|.+.+.++++
T Consensus 335 d~~I~~p~lPd~~~R~~Il~--------~~---~~~~~l~~~~d---l~~lA~~-----t-----~--G~sgadi~~l~~ 388 (428)
T 4b4t_K 335 DRKIEFPSLRDRRERRLIFG--------TI---ASKMSLAPEAD---LDSLIIR-----N-----D--SLSGAVIAAIMQ 388 (428)
T ss_dssp EEEEECCSSCCHHHHHHHHH--------HH---HHSSCBCTTCC---HHHHHHH-----T-----T--TCCHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH--------HH---hcCCCCCcccC---HHHHHHH-----C-----C--CCCHHHHHHHHH
Confidence 99998976555443322221 11 111 1122211 2222211 1 1 245699999999
Q ss_pred HHHHHHHHcCCCCCCHHhHHHHHH
Q psy17703 566 LSEAHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 566 la~A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
-|.-.|..+.+..|+.+|+.+|+.
T Consensus 389 eA~~~a~r~~~~~i~~~d~~~A~~ 412 (428)
T 4b4t_K 389 EAGLRAVRKNRYVILQSDLEEAYA 412 (428)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHH
Confidence 888888888899999999999965
No 40
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.25 E-value=1.3e-11 Score=131.68 Aligned_cols=171 Identities=19% Similarity=0.179 Sum_probs=99.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCc--cccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKG--SSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~--ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
..++||+||||||||++++++++.+....+. ++.. +...|.+....+ .. +. .......+|+||||+|.+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~-----~~-f~--~a~~~~~~vl~iDEid~l 122 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVK-----QL-FA--MARENKPSIIFIDQVDAL 122 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHH-----HH-HH--HHHHTSSEEEEEECGGGG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHH-----HH-HH--HHHhcCCeEEEechhhhh
Confidence 4689999999999999999999976543221 1000 000010000000 00 00 001123579999999998
Q ss_pred ChH-----------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703 422 SDT-----------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF 490 (720)
Q Consensus 422 ~~~-----------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~ 490 (720)
... .+..++..|+... ..+.++.||||+|... .|++++++||+..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vi~atn~~~-------------~ld~al~~Rf~~~i 179 (322)
T 3eie_A 123 TGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLGATNIPW-------------QLDSAIRRRFERRI 179 (322)
T ss_dssp SCC------CCTHHHHHHHHHHHGGGG----------TSCCCEEEEEEESCGG-------------GSCHHHHHHCCEEE
T ss_pred hccCCCCcchHHHHHHHHHHHHhcccc----------ccCCceEEEEecCChh-------------hCCHHHHcccCeEE
Confidence 652 3455666664321 1134688999999654 58999999999888
Q ss_pred EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703 491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH 570 (720)
Q Consensus 491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~ 570 (720)
.+..|+.++....+..+ ++ .....++++..+.+.... -..+.+.+..+++-|...
T Consensus 180 ~~~~p~~~~r~~il~~~------------~~-~~~~~~~~~~l~~la~~t------------~g~sg~di~~l~~~a~~~ 234 (322)
T 3eie_A 180 YIPLPDLAARTTMFEIN------------VG-DTPCVLTKEDYRTLGAMT------------EGYSGSDIAVVVKDALMQ 234 (322)
T ss_dssp ECCCCCHHHHHHHHHHH------------HT-TCCCCCCHHHHHHHHHTT------------TTCCHHHHHHHHHHHTTH
T ss_pred EeCCCCHHHHHHHHHHH------------hc-cCCCCCCHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHH
Confidence 88887766554433321 11 123345666666554211 113458888888766444
Q ss_pred H
Q psy17703 571 A 571 (720)
Q Consensus 571 A 571 (720)
|
T Consensus 235 a 235 (322)
T 3eie_A 235 P 235 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 41
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.25 E-value=3.2e-11 Score=119.62 Aligned_cols=181 Identities=17% Similarity=0.219 Sum_probs=109.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCcc-----ccceeeecceeeecCCceeecccccc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPE-----TRQMVLQTGALVLADSGVCCIDEFDK 420 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~-----~~~~~~~~G~l~lad~gI~~IDEidk 420 (720)
.|+||+||||+|||++++.+++.+....+ ......+......... ...+ ...........++++|||++.
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vliiDe~~~ 113 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFGENW----RDNFIEMNASDERGIDVVRHKIKEF-ARTAPIGGAPFKIIFLDEADA 113 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGGGG----GGGEEEEETTCTTCHHHHHHHHHHH-HTSCCSTTCSCEEEEEETGGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcccc----ccceEEeccccccChHHHHHHHHHH-hcccCCCccCceEEEEeChhh
Confidence 46999999999999999999986521100 0000000000000000 0000 000011123567999999999
Q ss_pred CChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHH
Q psy17703 421 MSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQF 500 (720)
Q Consensus 421 m~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~ 500 (720)
++.+.+..|+..+++. +.++.+|+++|... .+.+++.+||. .+.+.+++.++.
T Consensus 114 l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~~-------------~~~~~l~~r~~-~i~~~~~~~~~~ 166 (226)
T 2chg_A 114 LTADAQAALRRTMEMY-------------SKSCRFILSCNYVS-------------RIIEPIQSRCA-VFRFKPVPKEAM 166 (226)
T ss_dssp SCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHTTSE-EEECCCCCHHHH
T ss_pred cCHHHHHHHHHHHHhc-------------CCCCeEEEEeCChh-------------hcCHHHHHhCc-eeecCCCCHHHH
Confidence 9999999999999863 23567788887542 47899999998 777777766554
Q ss_pred HHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCC
Q psy17703 501 DARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVE 580 (720)
Q Consensus 501 d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~ 580 (720)
...+. .+ ++. ....+++++.+.+.... ..++|.+..+++.+...+ +.|+
T Consensus 167 ~~~l~---------~~---~~~-~~~~~~~~~~~~l~~~~-------------~g~~r~l~~~l~~~~~~~-----~~I~ 215 (226)
T 2chg_A 167 KKRLL---------EI---CEK-EGVKITEDGLEALIYIS-------------GGDFRKAINALQGAAAIG-----EVVD 215 (226)
T ss_dssp HHHHH---------HH---HHH-HTCCBCHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHTC-----SCBC
T ss_pred HHHHH---------HH---HHH-cCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHHhcC-----ceec
Confidence 33322 11 111 23457888877776432 234687777666443332 6899
Q ss_pred HHhHHHHHH
Q psy17703 581 VQDVDEAWR 589 (720)
Q Consensus 581 ~~Dv~~Ai~ 589 (720)
.+|+++|+.
T Consensus 216 ~~~v~~~~~ 224 (226)
T 2chg_A 216 ADTIYQITA 224 (226)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999865
No 42
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.24 E-value=3.4e-11 Score=130.36 Aligned_cols=172 Identities=17% Similarity=0.175 Sum_probs=99.4
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceee---ecCCceeeccccccC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALV---LADSGVCCIDEFDKM 421 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~---lad~gI~~IDEidkm 421 (720)
..++||+||||||||++++++++.+....+.- ..+ .+........ ... + ...+. ....+|+||||+|.+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v-~~~---~l~~~~~g~~--~~~-~-~~~f~~a~~~~~~vl~iDEid~l 155 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV-SSS---DLVSKWMGES--EKL-V-KQLFAMARENKPSIIFIDQVDAL 155 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE-EHH---HHHSCC---C--HHH-H-HHHHHHHHHTSSEEEEEECGGGG
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe-eHH---HHhhhhcchH--HHH-H-HHHHHHHHHcCCeEEEEechHhh
Confidence 46899999999999999999999775322210 000 0000000000 000 0 00011 124679999999998
Q ss_pred ChH-----------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703 422 SDT-----------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF 490 (720)
Q Consensus 422 ~~~-----------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~ 490 (720)
... .++.|+..|+... ..+.++.||||+|... .+++++++||+..+
T Consensus 156 ~~~r~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vI~atn~~~-------------~ld~al~rRf~~~i 212 (355)
T 2qp9_X 156 TGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLGATNIPW-------------QLDSAIRRRFERRI 212 (355)
T ss_dssp TC------CTHHHHHHHHHHHHHHHCC-------------CCEEEEEEESCGG-------------GSCHHHHHTCCEEE
T ss_pred cccCCCCcchHHHHHHHHHHHHhhccc----------ccCCCeEEEeecCCcc-------------cCCHHHHcccCEEE
Confidence 743 3456666665321 1134688999999754 58899999999888
Q ss_pred EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703 491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH 570 (720)
Q Consensus 491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~ 570 (720)
.+..|+.+++...+..+ ++ .....+++...+.|...- . ..+.|.+..+++-|...
T Consensus 213 ~i~~P~~~~r~~il~~~------------l~-~~~~~~~~~~l~~la~~t----------~--G~sg~dl~~l~~~A~~~ 267 (355)
T 2qp9_X 213 YIPLPDLAARTTMFEIN------------VG-DTPSVLTKEDYRTLGAMT----------E--GYSGSDIAVVVKDALMQ 267 (355)
T ss_dssp ECCCCCHHHHHHHHHHH------------HT-TSCBCCCHHHHHHHHHHT----------T--TCCHHHHHHHHHHHHHH
T ss_pred EeCCcCHHHHHHHHHHH------------Hh-hCCCCCCHHHHHHHHHHc----------C--CCCHHHHHHHHHHHHHH
Confidence 88877766544333321 11 122245666666655321 0 13568888888766554
Q ss_pred HH
Q psy17703 571 AK 572 (720)
Q Consensus 571 A~ 572 (720)
|.
T Consensus 268 a~ 269 (355)
T 2qp9_X 268 PI 269 (355)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 43
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.23 E-value=4.8e-11 Score=129.30 Aligned_cols=189 Identities=16% Similarity=0.176 Sum_probs=109.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCccccccccceeecCccccce--eee--cceeeecCCceeeccccc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYITKDPETRQM--VLQ--TGALVLADSGVCCIDEFD 419 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~~~~~~~~~~--~~~--~G~l~lad~gI~~IDEid 419 (720)
..++||+||||||||++++++++.+....+. ++. .+. ....+.. ..+ -........+++||||+|
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~-----~l~-----~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid 186 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISAS-----SLT-----SKWVGEGEKMVRALFAVARCQQPAVIFIDEID 186 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGG-----GGC-----CSSTTHHHHHHHHHHHHHHHTCSEEEEEETHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehH-----Hhh-----ccccchHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence 4689999999999999999999977432211 110 000 0000000 000 000011346899999999
Q ss_pred cCCh-----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703 420 KMSD-----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL 488 (720)
Q Consensus 420 km~~-----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl 488 (720)
.+.. ..+..|+..|+.. ....+.++.||||+|+.. .+++++++||+.
T Consensus 187 ~l~~~~~~~~~~~~~~~~~~lL~~l~~~---------~~~~~~~v~vI~atn~~~-------------~l~~~l~~Rf~~ 244 (357)
T 3d8b_A 187 SLLSQRGDGEHESSRRIKTEFLVQLDGA---------TTSSEDRILVVGATNRPQ-------------EIDEAARRRLVK 244 (357)
T ss_dssp HHTBC------CHHHHHHHHHHHHHHC-------------CCCCEEEEEEESCGG-------------GBCHHHHTTCCE
T ss_pred hhhccCCCCcchHHHHHHHHHHHHHhcc---------cccCCCCEEEEEecCChh-------------hCCHHHHhhCce
Confidence 8843 2344555555422 222346789999999753 478999999998
Q ss_pred EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE 568 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~ 568 (720)
.+.+..|+.++....+..+ ++ .....+++++.+.+.... -..+.+.+..|++-|.
T Consensus 245 ~i~i~~p~~~~r~~il~~~------------~~-~~~~~l~~~~l~~la~~t------------~G~s~~dl~~l~~~a~ 299 (357)
T 3d8b_A 245 RLYIPLPEASARKQIVINL------------MS-KEQCCLSEEEIEQIVQQS------------DAFSGADMTQLCREAS 299 (357)
T ss_dssp EEECCCCCHHHHHHHHHHH------------HH-TSCBCCCHHHHHHHHHHT------------TTCCHHHHHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHHH------------Hh-hcCCCccHHHHHHHHHHc------------CCCCHHHHHHHHHHHH
Confidence 8888877766544333211 11 123346666666655321 0134577888777665
Q ss_pred HHHHHcC------------CCCCCHHhHHHHHHH
Q psy17703 569 AHAKMRY------------SETVEVQDVDEAWRL 590 (720)
Q Consensus 569 A~A~l~~------------~~~V~~~Dv~~Ai~l 590 (720)
..|.-++ ...|+.+|+..|+.-
T Consensus 300 ~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~ 333 (357)
T 3d8b_A 300 LGPIRSLQTADIATITPDQVRPIAYIDFENAFRT 333 (357)
T ss_dssp THHHHHCCC----------CCCBCHHHHHHHHHH
T ss_pred HHHHHHhhhhhhccccccccCCcCHHHHHHHHHh
Confidence 4443322 246788888888653
No 44
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.23 E-value=2.8e-11 Score=129.24 Aligned_cols=172 Identities=22% Similarity=0.184 Sum_probs=96.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCcc--ccceeeecceeeecCCceeeccccccCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPE--TRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~--~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
..++||+||||||||++++++++.+....+.....+.... ....... .... +. .......+|+||||+|.+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~---~~~g~~~~~~~~l-f~--~a~~~~~~vl~iDEid~l~ 118 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS---KWLGESEKLVKNL-FQ--LARENKPSIIFIDEIDSLC 118 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC---SSCCSCHHHHHHH-HH--HHHHTSSEEEEEETTTGGG
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh---hhhhHHHHHHHHH-HH--HHHhcCCcEEEeecHHHhc
Confidence 3589999999999999999999987322211111111000 0000000 0000 00 0011245799999999983
Q ss_pred h-----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEE
Q psy17703 423 D-----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFL 491 (720)
Q Consensus 423 ~-----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~ 491 (720)
. ...+.|+..|+... ..+.++.+|||+|... .+++++++||+..+.
T Consensus 119 ~~~~~~~~~~~~~~~~~ll~~ld~~~----------~~~~~v~vI~atn~~~-------------~ld~al~rRf~~~i~ 175 (322)
T 1xwi_A 119 GSRSENESEAARRIKTEFLVQMQGVG----------VDNDGILVLGATNIPW-------------VLDSAIRRRFEKRIY 175 (322)
T ss_dssp CCSSSCCTTHHHHHHHHHHHHHHCSS----------SCCTTEEEEEEESCTT-------------TSCHHHHHTCCEEEE
T ss_pred cccccccchHHHHHHHHHHHHHhccc----------ccCCCEEEEEecCCcc-------------cCCHHHHhhcCeEEE
Confidence 2 22344555554211 1135688999999764 488999999998888
Q ss_pred ecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703 492 LLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH 570 (720)
Q Consensus 492 l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~ 570 (720)
+..|+.+++...+..++ + .....++++..+.|... . -..+.+.+..+++-|.-.
T Consensus 176 i~~P~~~~r~~il~~~l------------~-~~~~~l~~~~l~~la~~-------t-----~G~sgadl~~l~~~A~~~ 229 (322)
T 1xwi_A 176 IPLPEPHARAAMFKLHL------------G-TTQNSLTEADFRELGRK-------T-----DGYSGADISIIVRDALMQ 229 (322)
T ss_dssp CCCCCHHHHHHHHHHHH------------T-TCCBCCCHHHHHHHHHT-------C-----TTCCHHHHHHHHHHHHTH
T ss_pred eCCcCHHHHHHHHHHHH------------h-cCCCCCCHHHHHHHHHH-------c-----CCCCHHHHHHHHHHHHHH
Confidence 88887665544433221 1 12334566655555421 0 113458888887755433
No 45
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.22 E-value=1.7e-11 Score=126.07 Aligned_cols=195 Identities=21% Similarity=0.205 Sum_probs=102.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccc--cccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSS--AVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss--~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
..++||+||||||||++++++++.+....+ ..+.... ..+...... ......+ .....+++||||+|.+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a---~~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARV-----RSLFKEA---RARAPCIVYIDEIDAV 110 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHH-----HHHHHHH---HHTCSEEEEEECC---
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHH-----HHHHHHH---HhcCCeEEEEeCcchh
Confidence 468999999999999999999997643222 1111100 000000000 0000000 0012579999999998
Q ss_pred C------------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cce
Q psy17703 422 S------------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFD 487 (720)
Q Consensus 422 ~------------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFd 487 (720)
. ...+..+.++++.-. +. ..+.++.+|+|+|... .+++++++ ||+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~------~~--~~~~~~~vi~~tn~~~-------------~ld~~l~~~~R~~ 169 (262)
T 2qz4_A 111 GKKRSTTMSGFSNTEEEQTLNQLLVEMD------GM--GTTDHVIVLASTNRAD-------------ILDGALMRPGRLD 169 (262)
T ss_dssp ----------------CHHHHHHHHHHH------TC--CTTCCEEEEEEESCGG-------------GGGSGGGSTTSCC
T ss_pred hccccccccCccchhHHHHHHHHHHHhh------Cc--CCCCCEEEEecCCChh-------------hcCHHHhcCCcCC
Confidence 3 233334444443210 00 1134688999999653 46789998 999
Q ss_pred eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHH-HHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703 488 LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEA-SQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL 566 (720)
Q Consensus 488 li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea-~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl 566 (720)
..+.+..|+.++....+. .++.. .......+. .+.+.. .. -..++|.+..+++.
T Consensus 170 ~~i~i~~p~~~~r~~il~---------~~~~~----~~~~~~~~~~~~~l~~-------~~-----~g~~~~~l~~l~~~ 224 (262)
T 2qz4_A 170 RHVFIDLPTLQERREIFE---------QHLKS----LKLTQSSTFYSQRLAE-------LT-----PGFSGADIANICNE 224 (262)
T ss_dssp EEEECCSCCHHHHHHHHH---------HHHHH----TTCCBTHHHHHHHHHH-------TC-----TTCCHHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHH---------HHHHh----CCCCcchhhHHHHHHH-------HC-----CCCCHHHHHHHHHH
Confidence 888888777665443322 22221 122233222 122221 01 12356899999999
Q ss_pred HHHHHHHcCCCCCCHHhHHHHHHHHHH
Q psy17703 567 SEAHAKMRYSETVEVQDVDEAWRLHRE 593 (720)
Q Consensus 567 a~A~A~l~~~~~V~~~Dv~~Ai~l~~~ 593 (720)
|...|..+.+..|+.+|+.+|+.-+..
T Consensus 225 a~~~a~~~~~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 225 AALHAAREGHTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp HHTC--------CCBCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcc
Confidence 888888888899999999999875543
No 46
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.21 E-value=8.4e-11 Score=123.57 Aligned_cols=193 Identities=20% Similarity=0.195 Sum_probs=110.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD 423 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~ 423 (720)
..++||+||||||||++++++++.+....+ .++.. +......... .....--........+++||||+|.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~-----l~~~~~~~~~-~~~~~~~~~~~~~~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNISAAS-----LTSKYVGDGE-KLVRALFAVARHMQPSIIFIDEVDSLLS 127 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTT-----TSSSSCSCHH-HHHHHHHHHHHHTCSEEEEEETGGGTSB
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHH-----HhhcccchHH-HHHHHHHHHHHHcCCcEEEeccHHHhcc
Confidence 468999999999999999999997753221 11110 0000000000 0000000001123468999999998843
Q ss_pred -----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEe
Q psy17703 424 -----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLL 492 (720)
Q Consensus 424 -----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l 492 (720)
..+..|+..|+..... ....++.+++|+|... .+++++++||+..+.+
T Consensus 128 ~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~~~v~vi~~tn~~~-------------~l~~~l~~R~~~~i~~ 186 (297)
T 3b9p_A 128 ERSSSEHEASRRLKTEFLVEFDGLPGN--------PDGDRIVVLAATNRPQ-------------ELDEAALRRFTKRVYV 186 (297)
T ss_dssp CC-----CCSHHHHHHHHHHHHHCC--------------CEEEEEEESCGG-------------GBCHHHHHHCCEEEEC
T ss_pred ccccCcchHHHHHHHHHHHHHhccccc--------CCCCcEEEEeecCChh-------------hCCHHHHhhCCeEEEe
Confidence 3345566666643221 1124578999999653 4789999999988888
Q ss_pred cCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703 493 LDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK 572 (720)
Q Consensus 493 ~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~ 572 (720)
..|+.++....+.. + ++ .....+++++.+.+...- -..+.+.+..+++-|...|.
T Consensus 187 ~~p~~~~r~~il~~---------~---~~-~~~~~~~~~~~~~la~~~------------~g~~~~~l~~l~~~a~~~a~ 241 (297)
T 3b9p_A 187 SLPDEQTRELLLNR---------L---LQ-KQGSPLDTEALRRLAKIT------------DGYSGSDLTALAKDAALEPI 241 (297)
T ss_dssp CCCCHHHHHHHHHH---------H---HG-GGSCCSCHHHHHHHHHHT------------TTCCHHHHHHHHHHHTTHHH
T ss_pred CCcCHHHHHHHHHH---------H---HH-hcCCCCCHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHHHH
Confidence 77766554333221 1 11 123346666666655321 11334788888887766665
Q ss_pred HcC------------CCCCCHHhHHHHHH
Q psy17703 573 MRY------------SETVEVQDVDEAWR 589 (720)
Q Consensus 573 l~~------------~~~V~~~Dv~~Ai~ 589 (720)
-++ ...|+.+|+..|+.
T Consensus 242 r~~~~~~~~~~~~~~~~~i~~~d~~~a~~ 270 (297)
T 3b9p_A 242 RELNVEQVKCLDISAMRAITEQDFHSSLK 270 (297)
T ss_dssp HTCC--------CCCCCCCCHHHHHHHTT
T ss_pred HHHhhhhcccccccccCCcCHHHHHHHHH
Confidence 444 24688888888744
No 47
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.18 E-value=4.7e-12 Score=118.88 Aligned_cols=114 Identities=11% Similarity=0.117 Sum_probs=80.3
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD 423 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~ 423 (720)
.+.||||+||||||||.+++++++.+++.++..... +. . ....|.+..+++|++||||++.+++
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~-----~~---------~--~~~~~~~~~a~~~~l~lDei~~l~~ 89 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVE-----YL---------I--DMPMELLQKAEGGVLYVGDIAQYSR 89 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTT-----HH---------H--HCHHHHHHHTTTSEEEEEECTTCCH
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCCCeEEechhh-----CC---------h--HhhhhHHHhCCCCeEEEeChHHCCH
Confidence 568999999999999999999987665222111111 00 0 0124555667889999999999999
Q ss_pred HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee-EEEec
Q psy17703 424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL-IFLLL 493 (720)
Q Consensus 424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl-i~~l~ 493 (720)
+.|..|+++|+++. +.++.+|+|+|.....+ . .- +.+.|++||.. .+.++
T Consensus 90 ~~q~~Ll~~l~~~~------------~~~~~iI~~tn~~~~~~-~------~~-~~~~L~~rl~~~~i~lP 140 (143)
T 3co5_A 90 NIQTGITFIIGKAE------------RCRVRVIASCSYAAGSD-G------IS-CEEKLAGLFSESVVRIP 140 (143)
T ss_dssp HHHHHHHHHHHHHT------------TTTCEEEEEEEECTTTC---------C-HHHHHHHHSSSEEEEEC
T ss_pred HHHHHHHHHHHhCC------------CCCEEEEEecCCCHHHH-H------hC-ccHHHHHHhcCcEEeCC
Confidence 99999999998752 56788999999765332 1 11 66888999763 34443
No 48
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.16 E-value=1.1e-11 Score=116.60 Aligned_cols=114 Identities=14% Similarity=0.200 Sum_probs=78.9
Q ss_pred CCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 343 PAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 343 pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
+.+.||||+||||||||++++++++.+++.-. ..+ ..+....+. ....|.+..+++|++||||++.++
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~------~~v-~~~~~~~~~-----~~~~~~~~~a~~g~l~ldei~~l~ 89 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG------EFV-YRELTPDNA-----PQLNDFIALAQGGTLVLSHPEHLT 89 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTS------CCE-EEECCTTTS-----SCHHHHHHHHTTSCEEEECGGGSC
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCC------CEE-EECCCCCcc-----hhhhcHHHHcCCcEEEEcChHHCC
Confidence 36789999999999999999999997754211 111 111111111 122455566789999999999999
Q ss_pred hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703 423 DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD 487 (720)
Q Consensus 423 ~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd 487 (720)
++.|..|+++|+. .+.++.+|+|+|..... ....-.+.+.|+.|+.
T Consensus 90 ~~~q~~Ll~~l~~-------------~~~~~~~I~~t~~~~~~------~~~~~~~~~~L~~rl~ 135 (145)
T 3n70_A 90 REQQYHLVQLQSQ-------------EHRPFRLIGIGDTSLVE------LAASNHIIAELYYCFA 135 (145)
T ss_dssp HHHHHHHHHHHHS-------------SSCSSCEEEEESSCHHH------HHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhh-------------cCCCEEEEEECCcCHHH------HHHcCCCCHHHHHHhc
Confidence 9999999999932 24567899999964321 1223357788888876
No 49
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.14 E-value=7.7e-11 Score=131.41 Aligned_cols=173 Identities=21% Similarity=0.154 Sum_probs=94.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh-
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD- 423 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~- 423 (720)
..++||+||||||||++++++++.+....+.....+...+...+... ...... +. .......+|+||||+|.+..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~-~~~~~~-f~--~a~~~~~~vl~iDEid~l~~~ 242 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESE-KLVKNL-FQ--LARENKPSIIFIDEIDSLCGS 242 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CC-CTHHHH-HH--HHHHSCSEEEEESCTTTTCCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHH-HHHHHH-HH--HHHHcCCeEEEEechHhhccC
Confidence 36899999999999999999999873222211111111000000000 000000 00 00112457999999999832
Q ss_pred ----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEec
Q psy17703 424 ----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLL 493 (720)
Q Consensus 424 ----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~ 493 (720)
..++.|+..|+... ..+.++.||+|+|+.. .++++|++||+.++.+.
T Consensus 243 ~~~~~~~~~~~~~~~lL~~l~~~~----------~~~~~v~vI~atn~~~-------------~ld~al~rRf~~~i~i~ 299 (444)
T 2zan_A 243 RSENESEAARRIKTEFLVQMQGVG----------VDNDGILVLGATNIPW-------------VLDSAIRRRFEKRIYIP 299 (444)
T ss_dssp SSCCCCGGGHHHHHHHHTTTTCSS----------CCCSSCEEEEEESCGG-------------GSCHHHHTTCCEEEECC
T ss_pred CCCccccHHHHHHHHHHHHHhCcc----------cCCCCEEEEecCCCcc-------------ccCHHHHhhcceEEEeC
Confidence 23334444443210 1245789999999764 48899999999888887
Q ss_pred CCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 494 DPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 494 d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
.|+.+.+...+..++ + .....+++...+.|.... -..+.+.++.+++-|..
T Consensus 300 ~P~~~~r~~il~~~l------------~-~~~~~l~~~~l~~la~~t------------~G~sgadl~~l~~~a~~ 350 (444)
T 2zan_A 300 LPEAHARAAMFRLHL------------G-STQNSLTEADFQELGRKT------------DGYSGADISIIVRDALM 350 (444)
T ss_dssp CCCHHHHHHHHHHHH------------T-TSCEECCHHHHHHHHHHT------------TTCCHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHH------------h-cCCCCCCHHHHHHHHHHc------------CCCCHHHHHHHHHHHHH
Confidence 777665543333221 1 122235566555554321 01345788877775543
No 50
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.12 E-value=4.9e-10 Score=120.24 Aligned_cols=188 Identities=17% Similarity=0.187 Sum_probs=112.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCC-----ccccCCccccccccceeecCccccceeee---------cceeeecCCc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRS-----QYTSGKGSSAVGLTAYITKDPETRQMVLQ---------TGALVLADSG 411 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~-----~~~~g~~ss~~glta~~~~~~~~~~~~~~---------~G~l~lad~g 411 (720)
.|+||+||||||||++++++++.+... .+.....+...+. ...++.. ..+... .+....++.+
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI--SIVREKV-KNFARLTVSKPSKHDLENYPCPPYK 135 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH--HHHTTHH-HHHHHSCCCCCCTTHHHHSCCCSCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch--HHHHHHH-HHHhhhcccccchhhcccCCCCCce
Confidence 469999999999999999999875310 0100010110000 0011100 000000 0001123457
Q ss_pred eeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEE
Q psy17703 412 VCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFL 491 (720)
Q Consensus 412 I~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~ 491 (720)
+++|||++.+++..+++|+++|++.. .++.++.++|... .+.+++.+||. .+.
T Consensus 136 vliiDE~~~l~~~~~~~Ll~~le~~~-------------~~~~~il~~~~~~-------------~l~~~l~sR~~-~i~ 188 (353)
T 1sxj_D 136 IIILDEADSMTADAQSALRRTMETYS-------------GVTRFCLICNYVT-------------RIIDPLASQCS-KFR 188 (353)
T ss_dssp EEEETTGGGSCHHHHHHHHHHHHHTT-------------TTEEEEEEESCGG-------------GSCHHHHHHSE-EEE
T ss_pred EEEEECCCccCHHHHHHHHHHHHhcC-------------CCceEEEEeCchh-------------hCcchhhccCc-eEE
Confidence 99999999999999999999998742 2345566666432 47899999997 677
Q ss_pred ecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHH
Q psy17703 492 LLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHA 571 (720)
Q Consensus 492 l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A 571 (720)
+.+++.++....+. ..-..-...+++++.+.+.+... ..+|.+..+++.+...+
T Consensus 189 ~~~~~~~~~~~~l~-------------~~~~~~~~~i~~~~l~~l~~~~~-------------G~~r~~~~~l~~~~~~~ 242 (353)
T 1sxj_D 189 FKALDASNAIDRLR-------------FISEQENVKCDDGVLERILDISA-------------GDLRRGITLLQSASKGA 242 (353)
T ss_dssp CCCCCHHHHHHHHH-------------HHHHTTTCCCCHHHHHHHHHHTS-------------SCHHHHHHHHHHTHHHH
T ss_pred eCCCCHHHHHHHHH-------------HHHHHhCCCCCHHHHHHHHHHcC-------------CCHHHHHHHHHHHHHhc
Confidence 77777665433332 11111234588888888775421 24688777777655554
Q ss_pred HHcCCC-CCCHHhHHHHHH
Q psy17703 572 KMRYSE-TVEVQDVDEAWR 589 (720)
Q Consensus 572 ~l~~~~-~V~~~Dv~~Ai~ 589 (720)
.-.... .|+.+|+.+++.
T Consensus 243 ~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 243 QYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHCSCCCCCHHHHHHHHT
T ss_pred CCCccCccccHHHHHHHhC
Confidence 332222 799999988754
No 51
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.12 E-value=8.4e-11 Score=132.35 Aligned_cols=192 Identities=18% Similarity=0.159 Sum_probs=114.9
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccce-eeecceeeecC---Cceeeccccc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQM-VLQTGALVLAD---SGVCCIDEFD 419 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~-~~~~G~l~lad---~gI~~IDEid 419 (720)
...++||+||||||||++++++++.+....+. +.+........++. ....+.+..+. .+++||||+|
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~---------vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId 307 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFL---------INGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEE---------EEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEE---------EEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchh
Confidence 45689999999999999999999877432211 00000000000000 00011222222 3599999997
Q ss_pred cCCh-----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703 420 KMSD-----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF 486 (720)
Q Consensus 420 km~~-----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF 486 (720)
.+.. ..+..|+..|+... .+.++.||||+|+.. .|++++++ ||
T Consensus 308 ~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-----------~~~~v~vIaaTn~~~-------------~Ld~al~r~gRf 363 (489)
T 3hu3_A 308 AIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATNRPN-------------SIDPALRRFGRF 363 (489)
T ss_dssp HHCBCTTSCCCHHHHHHHHHHHHHHHHSC-----------TTSCEEEEEEESCGG-------------GBCGGGGSTTSS
T ss_pred hhccccccccchHHHHHHHHHHHHhhccc-----------cCCceEEEEecCCcc-------------ccCHHHhCCCcC
Confidence 7654 56778899987432 245789999999753 47899999 99
Q ss_pred eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703 487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL 566 (720)
Q Consensus 487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl 566 (720)
+..+.+..|+.+++...+..+. + .. +...+...+.+.. + ....+.|.+..|++-
T Consensus 364 ~~~i~i~~P~~~eR~~IL~~~~------------~-~~-~l~~~~~l~~la~-----~-------t~g~s~~dL~~L~~~ 417 (489)
T 3hu3_A 364 DREVDIGIPDATGRLEILQIHT------------K-NM-KLADDVDLEQVAN-----E-------THGHVGADLAALCSE 417 (489)
T ss_dssp CEEEECCCCCHHHHHHHHHHHT------------T-TS-CBCTTCCHHHHHH-----T-------CTTCCHHHHHHHHHH
T ss_pred ceEEEeCCCCHHHHHHHHHHHH------------h-cC-CCcchhhHHHHHH-----H-------ccCCcHHHHHHHHHH
Confidence 9999998888776655544322 1 11 1111111111111 0 112346888888887
Q ss_pred HHHHHHHcCCC-----------------CCCHHhHHHHHHHHHHH
Q psy17703 567 SEAHAKMRYSE-----------------TVEVQDVDEAWRLHREA 594 (720)
Q Consensus 567 a~A~A~l~~~~-----------------~V~~~Dv~~Ai~l~~~~ 594 (720)
|...|..+..+ .|+.+|+..|++-++-+
T Consensus 418 A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps 462 (489)
T 3hu3_A 418 AALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (489)
T ss_dssp HHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHH
T ss_pred HHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCch
Confidence 77777655443 37788888887765543
No 52
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.12 E-value=5.6e-10 Score=112.51 Aligned_cols=187 Identities=17% Similarity=0.211 Sum_probs=115.1
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD 423 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~ 423 (720)
...+++|+||||||||++++.+++.+... + .....+......+... . .++ .+...++++|||++.++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~----~--~~~~~~~~~~~~~~~~-~-~~~----~~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL----E--RRSFYIPLGIHASIST-A-LLE----GLEQFDLICIDDVDAVAG 118 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT----T--CCEEEEEGGGGGGSCG-G-GGT----TGGGSSEEEEETGGGGTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc----C--CeEEEEEHHHHHHHHH-H-HHH----hccCCCEEEEeccccccC
Confidence 45799999999999999999999866321 0 0000010000000000 0 000 124568999999999987
Q ss_pred HH--HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCChHH
Q psy17703 424 TT--RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQSEQ 499 (720)
Q Consensus 424 ~~--~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~~~~ 499 (720)
+. +..|+.+++... . .....+|.++|.....+. .+.+++.+||. .++.+..++.++
T Consensus 119 ~~~~~~~l~~~l~~~~----~-------~~~~~ii~~~~~~~~~~~---------~~~~~l~~r~~~~~~i~l~~~~~~~ 178 (242)
T 3bos_A 119 HPLWEEAIFDLYNRVA----E-------QKRGSLIVSASASPMEAG---------FVLPDLVSRMHWGLTYQLQPMMDDE 178 (242)
T ss_dssp CHHHHHHHHHHHHHHH----H-------HCSCEEEEEESSCTTTTT---------CCCHHHHHHHHHSEEEECCCCCGGG
T ss_pred CHHHHHHHHHHHHHHH----H-------cCCCeEEEEcCCCHHHHH---------HhhhhhhhHhhcCceEEeCCCCHHH
Confidence 66 778888876431 0 112235666664432221 24588999996 788888887665
Q ss_pred HHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCC
Q psy17703 500 FDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETV 579 (720)
Q Consensus 500 ~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V 579 (720)
....+.. ++. .....+++++.+.+...+ +.+.|.+..+++.+.+.|.... ..|
T Consensus 179 ~~~~l~~---------~~~----~~~~~~~~~~~~~l~~~~-------------~g~~r~l~~~l~~~~~~a~~~~-~~I 231 (242)
T 3bos_A 179 KLAALQR---------RAA----MRGLQLPEDVGRFLLNRM-------------ARDLRTLFDVLDRLDKASMVHQ-RKL 231 (242)
T ss_dssp HHHHHHH---------HHH----HTTCCCCHHHHHHHHHHT-------------TTCHHHHHHHHHHHHHHHHHHT-CCC
T ss_pred HHHHHHH---------HHH----HcCCCCCHHHHHHHHHHc-------------cCCHHHHHHHHHHHHHHHHHhC-CCC
Confidence 4433332 111 124468888888777542 2346999998888777776554 469
Q ss_pred CHHhHHHHHH
Q psy17703 580 EVQDVDEAWR 589 (720)
Q Consensus 580 ~~~Dv~~Ai~ 589 (720)
+.+|+.+++.
T Consensus 232 t~~~v~~~l~ 241 (242)
T 3bos_A 232 TIPFVKEMLR 241 (242)
T ss_dssp CHHHHHHHHT
T ss_pred cHHHHHHHhh
Confidence 9999998864
No 53
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.11 E-value=4.8e-10 Score=123.78 Aligned_cols=117 Identities=20% Similarity=0.310 Sum_probs=83.1
Q ss_pred CCceeeccccccCChH------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecc-----cCCCCCCCCCcc
Q psy17703 409 DSGVCCIDEFDKMSDT------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAA-----NPCDSQWNTSKT 471 (720)
Q Consensus 409 d~gI~~IDEidkm~~~------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaa-----Np~~g~~~~~~~ 471 (720)
.+|++++|||||+... .|.+|+++||..+++. +- .... -.++.+|||+ ||.
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~-~~-~~~d-~~~ilfI~~gaf~~~~~~--------- 317 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KH-GMVK-TDHILFIASGAFQVARPS--------- 317 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE-TT-EEEE-CTTCEEEEEECCSSCCGG---------
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccc-cc-ceec-CCcEEEEeccccccCChh---------
Confidence 5789999999999753 5789999999877765 32 2222 2457788876 432
Q ss_pred cccccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHH-hhcCCcchHHHHHHHHHHHHHh
Q psy17703 472 IIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQ-EHLSPTLSEEASQRLIQTYVDM 543 (720)
Q Consensus 472 ~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar-~~~~p~ls~ea~~~l~~~y~~l 543 (720)
++.|+|++||++++.+.+...++..+.+.. -...++++|..... ..+.-.++++|.+.|++.+.+.
T Consensus 318 -----dlipel~~R~~i~i~l~~lt~~e~~~Il~~-~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~ 384 (444)
T 1g41_A 318 -----DLIPELQGRLPIRVELTALSAADFERILTE-PHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRV 384 (444)
T ss_dssp -----GSCHHHHTTCCEEEECCCCCHHHHHHHHHS-STTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHH
T ss_pred -----hcchHHhcccceeeeCCCCCHHHHHHHHHH-HHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHh
Confidence 255899999999999998888776655532 12335566654433 3456689999999999887654
No 54
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.11 E-value=3.1e-10 Score=134.98 Aligned_cols=166 Identities=13% Similarity=0.129 Sum_probs=86.1
Q ss_pred CCCccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecCccccceeee----cceeeecCCceeeccc
Q psy17703 343 PAEINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKDPETRQMVLQ----TGALVLADSGVCCIDE 417 (720)
Q Consensus 343 pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~~~~~~~~~~----~G~l~lad~gI~~IDE 417 (720)
+..-|+||+||||||||++++++++.+.+... ....+.....+.. .....|++... -+.+..+.++|+|||
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD- 274 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID- 274 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-
Confidence 35569999999999999999999997632110 0001111111111 00011111110 011112357899999
Q ss_pred cccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCCh
Q psy17703 418 FDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQS 497 (720)
Q Consensus 418 idkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~ 497 (720)
...+.++.|+.+|+.+ .+.+|+|+|+...+ ..+.++++|.+||. .+.+..|+.
T Consensus 275 ---~~~~~~~~L~~~l~~~---------------~v~~I~at~~~~~~--------~~~~~d~al~rRf~-~i~v~~p~~ 327 (758)
T 3pxi_A 275 ---AAIDASNILKPSLARG---------------ELQCIGATTLDEYR--------KYIEKDAALERRFQ-PIQVDQPSV 327 (758)
T ss_dssp ---C--------CCCTTSS---------------SCEEEEECCTTTTH--------HHHTTCSHHHHSEE-EEECCCCCH
T ss_pred ---CchhHHHHHHHHHhcC---------------CEEEEeCCChHHHH--------HHhhccHHHHhhCc-EEEeCCCCH
Confidence 4445566676666533 46789999976521 22357899999996 578888877
Q ss_pred HHHHHHHHhhc-----------chhHHHHHHHHHHhhcCC-cchHHHHHHHHHH
Q psy17703 498 EQFDARLARHL-----------DITVLRDYIAYAQEHLSP-TLSEEASQRLIQT 539 (720)
Q Consensus 498 ~~~d~~la~~i-----------~~~~l~~~i~~ar~~~~p-~ls~ea~~~l~~~ 539 (720)
++....+.... +.+.+.....++..++.. .++..+.+.+...
T Consensus 328 ~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a 381 (758)
T 3pxi_A 328 DESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEA 381 (758)
T ss_dssp HHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHH
Confidence 77666655322 333444444555554433 2344444444433
No 55
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.09 E-value=1.8e-10 Score=138.71 Aligned_cols=204 Identities=19% Similarity=0.151 Sum_probs=115.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCccccccccceeecCc--cccce--eeecceeeecCCceeeccc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTAYITKDP--ETRQM--VLQTGALVLADSGVCCIDE 417 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta~~~~~~--~~~~~--~~~~G~l~lad~gI~~IDE 417 (720)
.++||+||||||||++++++++.+.+. ++..+...............+ ..|.- ..-.+++....++++||||
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDE 668 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDE 668 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEec
Confidence 489999999999999999999987432 111111111000000000000 00000 0001122234578999999
Q ss_pred cccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCC-----C--Cccccc------ccCCChhhhc
Q psy17703 418 FDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWN-----T--SKTIID------NIRLPHTLLS 484 (720)
Q Consensus 418 idkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~-----~--~~~~~~------~~~l~~aLls 484 (720)
+++++++.++.|+++|+++.++-. .|..... .++.||+|+|.....+. + ...+.+ .-.+.++|++
T Consensus 669 i~~l~~~~~~~Ll~~l~~~~~~~~-~g~~vd~-~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~ 746 (854)
T 1qvr_A 669 IEKAHPDVFNILLQILDDGRLTDS-HGRTVDF-RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN 746 (854)
T ss_dssp GGGSCHHHHHHHHHHHTTTEECCS-SSCCEEC-TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH
T ss_pred ccccCHHHHHHHHHHhccCceECC-CCCEecc-CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH
Confidence 999999999999999999987742 2333333 35779999996311100 0 000111 2258899999
Q ss_pred cceeEEEecCCChHHHHHHHHhhcchhHHHHHHH-HHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHH
Q psy17703 485 RFDLIFLLLDPQSEQFDARLARHLDITVLRDYIA-YAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESL 563 (720)
Q Consensus 485 RFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~-~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~l 563 (720)
|||.++.+.++..++....+... +.++-. +.+..+...+++++.+.|..+... .+...|.|+.+
T Consensus 747 Rl~~~i~~~pl~~edi~~i~~~~-----l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~----------~~gn~R~L~~~ 811 (854)
T 1qvr_A 747 RLDEIVVFRPLTKEQIRQIVEIQ-----LSYLRARLAEKRISLELTEAAKDFLAERGYD----------PVFGARPLRRV 811 (854)
T ss_dssp TCSBCCBCCCCCHHHHHHHHHHH-----HHHHHHHHHTTTCEEEECHHHHHHHHHHHCB----------TTTBTSTHHHH
T ss_pred hcCeEEeCCCCCHHHHHHHHHHH-----HHHHHHHHHhCCceEEECHHHHHHHHHcCCC----------CCCChHHHHHH
Confidence 99988888776644443332211 121111 111223467999999999876321 13344777777
Q ss_pred HHH
Q psy17703 564 IRL 566 (720)
Q Consensus 564 irl 566 (720)
++-
T Consensus 812 i~~ 814 (854)
T 1qvr_A 812 IQR 814 (854)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 56
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.06 E-value=1.5e-09 Score=141.77 Aligned_cols=235 Identities=17% Similarity=0.172 Sum_probs=137.3
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccc---cceeeecceeeec----CCceeecc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPET---RQMVLQTGALVLA----DSGVCCID 416 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~---~~~~~~~G~l~la----d~gI~~ID 416 (720)
.+.|+||+||||||||++++.+....+......-.-+ ...++........ .....+.|.+..+ ...|+|||
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infs--a~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiD 1343 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFS--KDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCD 1343 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECC--TTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEee--cCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEec
Confidence 4579999999999999999655554433211110000 0001110100000 0001112322222 23599999
Q ss_pred ccccCChH------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCC-CCCCCCcccccccCCChhhhccceeE
Q psy17703 417 EFDKMSDT------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD-SQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 417 Eidkm~~~------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~-g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
|+|....+ ..+.|++.||.+.+...+.+....+ .++.+||||||++ |+. ..++++|++|| -+
T Consensus 1344 Einmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~-~~i~lIaA~Npp~~gGR---------~~l~~rllRrf-~v 1412 (2695)
T 4akg_A 1344 EINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTI-ERIHIVGACNPPTDPGR---------IPMSERFTRHA-AI 1412 (2695)
T ss_dssp TTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEE-ESEEEEEEECCTTSTTC---------CCCCHHHHTTE-EE
T ss_pred ccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEe-cCEEEEEecCCCccCCC---------ccCChhhhhee-eE
Confidence 98765433 6789999999988888777766666 7899999999985 331 25899999999 46
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcC--CCCCCcccCHHHHHHHHH-H
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLG--AGRGRISAYPRQLESLIR-L 566 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~--~~~~~~~~t~R~le~lir-l 566 (720)
+.+..|+++....++..++ +.++.... . -+.+.+....+.++.|..++..- ..+.+...++|.+.++++ +
T Consensus 1413 i~i~~P~~~~l~~I~~~il-----~~~l~~~~-~-v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGl 1485 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYY-----KAIFKLVP-E-FRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGV 1485 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHH-----HHHTTSSG-G-GGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHH-----HHHhccCH-H-HHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHH
Confidence 7777777776665555332 11111100 0 12345566677777777655432 235577788898877664 2
Q ss_pred HHHH-------------------HHHcCCCCCCHHhHHHHHHHHHHHHHHh
Q psy17703 567 SEAH-------------------AKMRYSETVEVQDVDEAWRLHREALKQS 598 (720)
Q Consensus 567 a~A~-------------------A~l~~~~~V~~~Dv~~Ai~l~~~~l~~~ 598 (720)
..+. .|+-...-|+.+|-.....++.+.++..
T Consensus 1486 l~~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~ 1536 (2695)
T 4akg_A 1486 YTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKY 1536 (2695)
T ss_dssp HHHHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HhcCchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 2221 1122234567777777777766666543
No 57
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=3.1e-10 Score=120.26 Aligned_cols=181 Identities=18% Similarity=0.261 Sum_probs=106.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCc----cccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQ----YTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~----~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
.|+||+||||+|||++++++++.+.... +.....+...+.. ..+. ....+ ...+.+..+..++++|||++.+
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~-~~~~~~~~~~~~vliiDe~~~l 122 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGIN--VIRE-KVKEF-ARTKPIGGASFKIIFLDEADAL 122 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHH--TTHH-HHHHH-HHSCCGGGCSCEEEEEETGGGS
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchH--HHHH-HHHHH-HhhCCcCCCCCeEEEEeCCCcC
Confidence 3799999999999999999998652110 0000000000000 0000 00000 0112222245789999999999
Q ss_pred ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHH
Q psy17703 422 SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFD 501 (720)
Q Consensus 422 ~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d 501 (720)
+++.+++|+.+|++. +..+.+|.++|... .+.+++.+||. .+.+.+++.++..
T Consensus 123 ~~~~~~~L~~~le~~-------------~~~~~~i~~~~~~~-------------~l~~~l~sr~~-~~~~~~l~~~~~~ 175 (327)
T 1iqp_A 123 TQDAQQALRRTMEMF-------------SSNVRFILSCNYSS-------------KIIEPIQSRCA-IFRFRPLRDEDIA 175 (327)
T ss_dssp CHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHHTEE-EEECCCCCHHHHH
T ss_pred CHHHHHHHHHHHHhc-------------CCCCeEEEEeCCcc-------------ccCHHHHhhCc-EEEecCCCHHHHH
Confidence 999999999999863 23456777777432 47899999998 6777777655443
Q ss_pred HHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCH
Q psy17703 502 ARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEV 581 (720)
Q Consensus 502 ~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~ 581 (720)
..+. ..-......+++++.+.+.... ..++|.+..+++.+.. ....++.
T Consensus 176 ~~l~-------------~~~~~~~~~~~~~~~~~l~~~~-------------~g~~r~~~~~l~~~~~-----~~~~i~~ 224 (327)
T 1iqp_A 176 KRLR-------------YIAENEGLELTEEGLQAILYIA-------------EGDMRRAINILQAAAA-----LDKKITD 224 (327)
T ss_dssp HHHH-------------HHHHTTTCEECHHHHHHHHHHH-------------TTCHHHHHHHHHHHHT-----TCSEECH
T ss_pred HHHH-------------HHHHhcCCCCCHHHHHHHHHHC-------------CCCHHHHHHHHHHHHh-----cCCCCCH
Confidence 2222 2211224457888888777532 1245877776654322 2235777
Q ss_pred HhHHHHH
Q psy17703 582 QDVDEAW 588 (720)
Q Consensus 582 ~Dv~~Ai 588 (720)
+++..+.
T Consensus 225 ~~v~~~~ 231 (327)
T 1iqp_A 225 ENVFMVA 231 (327)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 7776653
No 58
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.04 E-value=6.1e-10 Score=125.23 Aligned_cols=182 Identities=24% Similarity=0.232 Sum_probs=107.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecCccccceeeec-ceeeec---CCceeeccccccC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKDPETRQMVLQT-GALVLA---DSGVCCIDEFDKM 421 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~~~~~~~~~~~-G~l~la---d~gI~~IDEidkm 421 (720)
++||+||||||||+|+++++..+....+ .++... .. ...+.....- ..+..+ ..+++||||+|.+
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~--~~--------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l 135 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF--VE--------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 135 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGG--TS--------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHH--HH--------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 4999999999999999999998753221 121110 00 0000000000 001111 2479999999987
Q ss_pred Ch-----------H---HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--c
Q psy17703 422 SD-----------T---TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--R 485 (720)
Q Consensus 422 ~~-----------~---~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--R 485 (720)
.. . ..+.|+..|+... .+..+.++|++|... .|++++++ |
T Consensus 136 ~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-----------~~~~viviAatn~p~-------------~LD~aLlr~gR 191 (499)
T 2dhr_A 136 GRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATNRPD-------------ILDPALLRPGR 191 (499)
T ss_dssp CCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----------SSCCCEEEECCSCGG-------------GSCTTTSSTTS
T ss_pred HHhhccCcCCCcHHHHHHHHHHHHHhcccc-----------cCccEEEEEecCChh-------------hcCcccccccc
Confidence 42 1 1233444443211 133567899999653 37889998 9
Q ss_pred ceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHH-HHHHHHHHHHhhhcCCCCCCcc-cCHHHHHHH
Q psy17703 486 FDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEA-SQRLIQTYVDMRKLGAGRGRIS-AYPRQLESL 563 (720)
Q Consensus 486 Fdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea-~~~l~~~y~~lr~~~~~~~~~~-~t~R~le~l 563 (720)
||..+.+..|+.+++...+..|. +. ..+++++ ...+. . .++ .+.|+|+.+
T Consensus 192 fdr~i~i~~Pd~~~R~~IL~~~~------------~~---~~l~~dv~l~~lA----------~---~t~G~~gadL~~l 243 (499)
T 2dhr_A 192 FDRQIAIDAPDVKGREQILRIHA------------RG---KPLAEDVDLALLA----------K---RTPGFVGADLENL 243 (499)
T ss_dssp SCCEEECCCCCHHHHHHHHHHTT------------SS---SCCCCSSTTHHHH----------T---TSCSCCHHHHHHH
T ss_pred cceEEecCCCCHHHHHHHHHHHH------------hc---CCCChHHHHHHHH----------H---hcCCCCHHHHHHH
Confidence 99988888887766555444331 11 1122221 11121 0 111 234999999
Q ss_pred HHHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703 564 IRLSEAHAKMRYSETVEVQDVDEAWRL 590 (720)
Q Consensus 564 irla~A~A~l~~~~~V~~~Dv~~Ai~l 590 (720)
++-|...|..+.+..|+.+|+.+|+.-
T Consensus 244 v~~Aa~~A~~~~~~~It~~dl~~al~~ 270 (499)
T 2dhr_A 244 LNEAALLAAREGRRKITMKDLEEAADR 270 (499)
T ss_dssp HHHHHHHHTTTCCSSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 998888887777788999999998764
No 59
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.04 E-value=7.3e-10 Score=123.89 Aligned_cols=183 Identities=26% Similarity=0.279 Sum_probs=109.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccc--cccccceeecCccccceeeecceeeec---CCceeeccccc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSS--AVGLTAYITKDPETRQMVLQTGALVLA---DSGVCCIDEFD 419 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss--~~glta~~~~~~~~~~~~~~~G~l~la---d~gI~~IDEid 419 (720)
.++||+||||||||+|++++++.+....+ .++.... ..|..... . .+.+..+ ...|+||||+|
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~----------~-r~lf~~A~~~~p~ILfIDEid 118 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAAR----------V-RDLFAQAKAHAPCIVFIDEID 118 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHH----------H-HHHHHHHHHTCSEEEEEETGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHH----------H-HHHHHHHHhcCCCEEEEechh
Confidence 46999999999999999999987643222 1111000 00100000 0 0111111 24699999999
Q ss_pred cCChH--------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc-
Q psy17703 420 KMSDT--------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS- 484 (720)
Q Consensus 420 km~~~--------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls- 484 (720)
.+... .++.|+..|+.-. -+.++.||+|+|... .+++++++
T Consensus 119 ~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~-----------~~~~viVIaaTn~~~-------------~Ld~allR~ 174 (476)
T 2ce7_A 119 AVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD-----------SKEGIIVMAATNRPD-------------ILDPALLRP 174 (476)
T ss_dssp GTCCC---------CHHHHHHHHHHHHHHHSC-----------GGGTEEEEEEESCGG-------------GSCGGGGST
T ss_pred hhhhhcccccCcCcHHHHHHHHHHHHHHhccC-----------CCCCEEEEEecCChh-------------hhchhhccc
Confidence 98542 3445666665210 134688999999653 47888887
Q ss_pred -cceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHH-HHHHHHHHHHhhhcCCCCCCcccCHHHHHH
Q psy17703 485 -RFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEA-SQRLIQTYVDMRKLGAGRGRISAYPRQLES 562 (720)
Q Consensus 485 -RFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea-~~~l~~~y~~lr~~~~~~~~~~~t~R~le~ 562 (720)
|||..+.+..|+.+++...+..| ++. .+ +.++. .+.+.. + . ...+.|.|+.
T Consensus 175 gRFd~~i~i~~Pd~~~R~~Il~~~------------~~~--~~-l~~~v~l~~la~-----~--t-----~G~sgadL~~ 227 (476)
T 2ce7_A 175 GRFDKKIVVDPPDMLGRKKILEIH------------TRN--KP-LAEDVNLEIIAK-----R--T-----PGFVGADLEN 227 (476)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHH------------HTT--SC-BCTTCCHHHHHH-----T--C-----TTCCHHHHHH
T ss_pred CcceeEeecCCCCHHHHHHHHHHH------------HHh--CC-CcchhhHHHHHH-----h--c-----CCCcHHHHHH
Confidence 99998888877766554433322 111 11 11111 222211 0 0 1123589999
Q ss_pred HHHHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703 563 LIRLSEAHAKMRYSETVEVQDVDEAWRL 590 (720)
Q Consensus 563 lirla~A~A~l~~~~~V~~~Dv~~Ai~l 590 (720)
+++-|...|..+....|+.+|+.+|+.-
T Consensus 228 lv~~Aal~A~~~~~~~I~~~dl~~al~~ 255 (476)
T 2ce7_A 228 LVNEAALLAAREGRDKITMKDFEEAIDR 255 (476)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeecHHHHHHHHHH
Confidence 9998888887777889999999998763
No 60
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.03 E-value=4.4e-11 Score=123.78 Aligned_cols=184 Identities=23% Similarity=0.242 Sum_probs=105.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCcc--ccccccceeecCccccceeeecceeeec---CCceeeccccc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGS--SAVGLTAYITKDPETRQMVLQTGALVLA---DSGVCCIDEFD 419 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~s--s~~glta~~~~~~~~~~~~~~~G~l~la---d~gI~~IDEid 419 (720)
.++||+||||||||++++++++.+....+. .+... ...+...... .+.+..+ ..+++||||+|
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~vl~iDEid 113 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRV-----------RDLFETAKKQAPSIIFIDEID 113 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSS-----------STTHHHHHHSCSCEEEESCGG
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHH-----------HHHHHHHHhcCCeEEEEeChh
Confidence 469999999999999999999976432221 11100 0011100000 0111111 24899999999
Q ss_pred cCChHH---------------HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc
Q psy17703 420 KMSDTT---------------RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS 484 (720)
Q Consensus 420 km~~~~---------------~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls 484 (720)
.+.... +..|+..|+.. ...+.++.+++|+|... .+++++++
T Consensus 114 ~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~----------~~~~~~v~vi~ttn~~~-------------~ld~~l~r 170 (268)
T 2r62_A 114 AIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF----------GSENAPVIVLAATNRPE-------------ILDPALMR 170 (268)
T ss_dssp GTTC----------CCCSCSSTTTTTTTTTCS----------SCSCSCCEEEECBSCCT-------------TSCGGGGS
T ss_pred hhcccccccccCCCchhHHHHHHHHHHHhhCc----------ccCCCCEEEEEecCCch-------------hcCHhHcC
Confidence 997642 12233222210 01234578999999764 47889998
Q ss_pred --cceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHH
Q psy17703 485 --RFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLES 562 (720)
Q Consensus 485 --RFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~ 562 (720)
||+..+.+..|+.++....+..++ +. . +..++.. +........+ .+.|.+..
T Consensus 171 ~~Rf~~~i~i~~p~~~~r~~il~~~~------------~~-~-~~~~~~~----------~~~la~~~~g--~~g~dl~~ 224 (268)
T 2r62_A 171 PGRFDRQVLVDKPDFNGRVEILKVHI------------KG-V-KLANDVN----------LQEVAKLTAG--LAGADLAN 224 (268)
T ss_dssp SSSSCCCCBCCCCCTTTHHHHHHHHT------------SS-S-CCCSSCC----------TTTTTSSSCS--SCHHHHHH
T ss_pred CCCCCeEEEecCcCHHHHHHHHHHHH------------hc-C-CCCCccC----------HHHHHHHcCC--CCHHHHHH
Confidence 999888888777665443333211 10 1 0000000 0011111122 34599999
Q ss_pred HHHHHHHHHHHcCCCCCCHHhHHHHHH
Q psy17703 563 LIRLSEAHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 563 lirla~A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
+++-|...|..+....|+.+|+.+|+.
T Consensus 225 l~~~a~~~a~~~~~~~i~~~~~~~a~~ 251 (268)
T 2r62_A 225 IINEAALLAGRNNQKEVRQQHLKEAVE 251 (268)
T ss_dssp HHHHHHHTTSSSCCCSCCHHHHHTSCT
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 999888888777778999999988754
No 61
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.03 E-value=4.7e-09 Score=105.05 Aligned_cols=186 Identities=20% Similarity=0.173 Sum_probs=107.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCc---------------cccccccceeecCc-cccceeeeccee-eec
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKG---------------SSAVGLTAYITKDP-ETRQMVLQTGAL-VLA 408 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~---------------ss~~glta~~~~~~-~~~~~~~~~G~l-~la 408 (720)
..++|+||||+|||++++.+++.+.......... .............. ............ ...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 125 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcC
Confidence 4799999999999999999998663211100000 00000000000000 000000000000 112
Q ss_pred CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703 409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL 488 (720)
Q Consensus 409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl 488 (720)
...+++|||++.++++.+..|+..+++. +.++.+|.++|... .+++++++|+ .
T Consensus 126 ~~~vlviDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~t~~~~-------------~~~~~l~~r~-~ 178 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEHVKFLLATTDPQ-------------KLPVTILSRC-L 178 (250)
T ss_dssp SSEEEEEETGGGSCHHHHHHHHHHHHSC-------------CTTEEEEEEESCGG-------------GSCHHHHTTS-E
T ss_pred CceEEEEECcccccHHHHHHHHHHHhcC-------------CCceEEEEEeCChH-------------hCCHHHHHHh-h
Confidence 3569999999999999999999998742 34567778777432 4678999997 4
Q ss_pred EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE 568 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~ 568 (720)
.+.+.+++.++....+. .++ . .....+++++.+.+.+.. ..++|.+..+++.+-
T Consensus 179 ~i~l~~l~~~e~~~~l~---------~~~---~-~~~~~~~~~~~~~l~~~~-------------~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 179 QFHLKALDVEQIRHQLE---------HIL---N-EEHIAHEPRALQLLARAA-------------EGSLRDALSLTDQAI 232 (250)
T ss_dssp EEECCCCCHHHHHHHHH---------HHH---H-HTTCCBCHHHHHHHHHHH-------------TTCHHHHHHHHHHHH
T ss_pred hccCCCCCHHHHHHHHH---------HHH---H-hcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHH
Confidence 66777776655433322 111 1 124567788777766431 135688888776552
Q ss_pred HHHHHcCCCCCCHHhHHHHH
Q psy17703 569 AHAKMRYSETVEVQDVDEAW 588 (720)
Q Consensus 569 A~A~l~~~~~V~~~Dv~~Ai 588 (720)
......|+.+|+++|+
T Consensus 233 ----~~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 233 ----ASGDGQVSTQAVSAML 248 (250)
T ss_dssp ----TTTTSSBCHHHHHHHS
T ss_pred ----hccCceecHHHHHHHh
Confidence 2234589999999885
No 62
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.02 E-value=8.8e-09 Score=135.21 Aligned_cols=232 Identities=17% Similarity=0.213 Sum_probs=137.8
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCcccc--ceeeec--ceeeecC--C--ceeec
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETR--QMVLQT--GALVLAD--S--GVCCI 415 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~--~~~~~~--G~l~lad--~--gI~~I 415 (720)
.+.||||+||||||||++++.....++......-. .....++..+...... +..... |.+..+. | .|+||
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~in--fS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFi 1380 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLN--FSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFC 1380 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEEC--CCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEE--eeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEe
Confidence 56799999999999999887665555432111000 0001111111110111 111111 6555553 2 38999
Q ss_pred cccccCChH------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 416 DEFDKMSDT------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 416 DEidkm~~~------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
||++....+ ..+.|+++||.+.+...+.+....+ .++.++||+||.+++. ...++++|++||- +
T Consensus 1381 DDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i-~d~~~vaamnPp~~gG--------r~~l~~Rf~r~F~-v 1450 (3245)
T 3vkg_A 1381 DEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKL-DKIQFVGACNPPTDAG--------RVQLTHRFLRHAP-I 1450 (3245)
T ss_dssp TTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEE-SSEEEEEEECCTTSTT--------CCCCCHHHHTTCC-E
T ss_pred cccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEe-cCeEEEEEcCCCCCCC--------CccCCHHHHhhce-E
Confidence 999876654 6889999999999888666666666 7899999999986221 1258999999997 4
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCc---chHHHHHHHHHHHHHhhhcC--CCCCCcccCHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPT---LSEEASQRLIQTYVDMRKLG--AGRGRISAYPRQLESLI 564 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~---ls~ea~~~l~~~y~~lr~~~--~~~~~~~~t~R~le~li 564 (720)
+.+..|+++....+... ++..+ ....|. +.+....+.++.|..++..- ..+.+...++|.+..++
T Consensus 1451 i~i~~ps~esL~~If~t-----il~~~-----l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~ 1520 (3245)
T 3vkg_A 1451 LLVDFPSTSSLTQIYGT-----FNRAL-----MKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWD 1520 (3245)
T ss_dssp EECCCCCHHHHHHHHHH-----HHHHH-----TTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHH-----HHHHH-----HhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHH
Confidence 67777777665544332 11111 112333 34677778888887765532 23456777889888766
Q ss_pred H-HHHHHH-------------------HHcCCCCCCHHhHHHHHHHHHHHHHH
Q psy17703 565 R-LSEAHA-------------------KMRYSETVEVQDVDEAWRLHREALKQ 597 (720)
Q Consensus 565 r-la~A~A-------------------~l~~~~~V~~~Dv~~Ai~l~~~~l~~ 597 (720)
+ +..+.. |+-...-|+.+|-..-..++.+.++.
T Consensus 1521 qGll~~~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~ 1573 (3245)
T 3vkg_A 1521 RALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALK 1573 (3245)
T ss_dssp HHHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 5 233211 11122346667766666665555544
No 63
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.00 E-value=3.9e-10 Score=119.12 Aligned_cols=128 Identities=20% Similarity=0.239 Sum_probs=79.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeee---cCCceeeccccccC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVL---ADSGVCCIDEFDKM 421 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~l---ad~gI~~IDEidkm 421 (720)
..++||+||||||||++++++++.+....+. ...+. +......... .. ..+.+.. ...+++||||+|.+
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~-v~~~~---l~~~~~g~~~--~~--~~~~f~~a~~~~p~il~iDEid~l 120 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQANFIS-IKGPE---LLTMWFGESE--AN--VREIFDKARQAAPCVLFFDELDSI 120 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCEEEE-ECHHH---HHHHHHTTCT--TH--HHHHHHHHHHTCSEEEEECSTTHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhCCCEEE-EEhHH---HHhhhcCchH--HH--HHHHHHHHHhcCCeEEEEEChHHH
Confidence 4689999999999999999999987532221 01000 0000000000 00 0011111 12479999999986
Q ss_pred ChH--------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--c
Q psy17703 422 SDT--------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--R 485 (720)
Q Consensus 422 ~~~--------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--R 485 (720)
... .+..|+..|+.-. -+.++.||||+|... .+++++++ |
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~-----------~~~~v~vi~atn~~~-------------~ld~al~r~gR 176 (301)
T 3cf0_A 121 AKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVFIIGATNRPD-------------IIDPAILRPGR 176 (301)
T ss_dssp HHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-----------TTSSEEEEEEESCGG-------------GSCGGGGSTTS
T ss_pred hhccCCCcCCcchHHHHHHHHHHHHhhccc-----------CCCCEEEEEecCCcc-------------ccChHHhcCCc
Confidence 543 3566777776311 135689999999654 47899999 9
Q ss_pred ceeEEEecCCChHHHHHHH
Q psy17703 486 FDLIFLLLDPQSEQFDARL 504 (720)
Q Consensus 486 Fdli~~l~d~~~~~~d~~l 504 (720)
|+..+.+..|+.+++...+
T Consensus 177 f~~~i~i~~p~~~~r~~il 195 (301)
T 3cf0_A 177 LDQLIYIPLPDEKSRVAIL 195 (301)
T ss_dssp SCEEEECCCCCHHHHHHHH
T ss_pred cceEEecCCcCHHHHHHHH
Confidence 9988888888776654433
No 64
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.99 E-value=2.8e-10 Score=119.89 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=69.2
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCc--cccccccceeecCccccceeeeccee-eecCCceeeccccc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKG--SSAVGLTAYITKDPETRQMVLQTGAL-VLADSGVCCIDEFD 419 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~--ss~~glta~~~~~~~~~~~~~~~G~l-~lad~gI~~IDEid 419 (720)
....+||+||||||||++++++++.+....+. ++.. +..+|.+....+ +....+..+ .....+|+||||+|
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~-----~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIR-----QRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHH-----HHHHHHHHHHTTSSCCCEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHH-----HHHHHHHHHHhcCCCeEEEEechh
Confidence 34689999999999999999999987543221 1100 000111100000 000000000 01246899999999
Q ss_pred cCCh-------------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--
Q psy17703 420 KMSD-------------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS-- 484 (720)
Q Consensus 420 km~~-------------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls-- 484 (720)
++.. ..+..|++.|+..............-..++.+|+|+|... .++++|++
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-------------~ld~al~R~~ 176 (293)
T 3t15_A 110 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-------------TLYAPLIRDG 176 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-------------C--CHHHHHH
T ss_pred hhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-------------cCCHHHhCCC
Confidence 8765 2347888998754422111111122345789999999654 58899995
Q ss_pred cceeEEEe
Q psy17703 485 RFDLIFLL 492 (720)
Q Consensus 485 RFdli~~l 492 (720)
|||.++.+
T Consensus 177 R~d~~i~~ 184 (293)
T 3t15_A 177 RMEKFYWA 184 (293)
T ss_dssp HEEEEEEC
T ss_pred CCceeEeC
Confidence 99977654
No 65
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.99 E-value=7.7e-10 Score=117.73 Aligned_cols=183 Identities=17% Similarity=0.192 Sum_probs=101.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCc-cccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC-hH
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQ-YTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS-DT 424 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~-~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~-~~ 424 (720)
.+|+.||||||||++++++++.+...+ +.++.. .+ ....+... ..+. .. .-.....++++|||++.++ .+
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~---~~--~~~i~~~~-~~~~-~~-~~~~~~~~vliiDEi~~l~~~~ 121 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD---CK--IDFVRGPL-TNFA-SA-ASFDGRQKVIVIDEFDRSGLAE 121 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT---CC--HHHHHTHH-HHHH-HB-CCCSSCEEEEEEESCCCGGGHH
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc---cC--HHHHHHHH-HHHH-hh-cccCCCCeEEEEECCcccCcHH
Confidence 456777799999999999998774322 111111 00 00011100 0000 00 0011246799999999999 99
Q ss_pred HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHH
Q psy17703 425 TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARL 504 (720)
Q Consensus 425 ~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~l 504 (720)
.++.|+..||+. +.++.+|+++|+.. .++++|++||. ++.+..|+.++..+.+
T Consensus 122 ~~~~L~~~le~~-------------~~~~~iI~~~n~~~-------------~l~~~l~sR~~-~i~~~~~~~~e~~~il 174 (324)
T 3u61_B 122 SQRHLRSFMEAY-------------SSNCSIIITANNID-------------GIIKPLQSRCR-VITFGQPTDEDKIEMM 174 (324)
T ss_dssp HHHHHHHHHHHH-------------GGGCEEEEEESSGG-------------GSCTTHHHHSE-EEECCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhC-------------CCCcEEEEEeCCcc-------------ccCHHHHhhCc-EEEeCCCCHHHHHHHH
Confidence 999999999863 24578888999654 48899999996 6788777766544333
Q ss_pred HhhcchhHHHHHHHHHHhhcCCcchH-HHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHh
Q psy17703 505 ARHLDITVLRDYIAYAQEHLSPTLSE-EASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQD 583 (720)
Q Consensus 505 a~~i~~~~l~~~i~~ar~~~~p~ls~-ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~D 583 (720)
... .+++......-...+++ ++.+.+.... ....|.+...+..+ + ....++.++
T Consensus 175 ~~~------~~~l~~~~~~~~~~~~~~~~~~~l~~~~-------------~gd~R~a~~~L~~~---~---~~~~i~~~~ 229 (324)
T 3u61_B 175 KQM------IRRLTEICKHEGIAIADMKVVAALVKKN-------------FPDFRKTIGELDSY---S---SKGVLDAGI 229 (324)
T ss_dssp HHH------HHHHHHHHHHHTCCBSCHHHHHHHHHHT-------------CSCTTHHHHHHHHH---G---GGTCBCC--
T ss_pred HHH------HHHHHHHHHHcCCCCCcHHHHHHHHHhC-------------CCCHHHHHHHHHHH---h---ccCCCCHHH
Confidence 321 11121111112456777 8887776431 11235554444322 2 234688888
Q ss_pred HHHHHH
Q psy17703 584 VDEAWR 589 (720)
Q Consensus 584 v~~Ai~ 589 (720)
+.++..
T Consensus 230 v~~~~~ 235 (324)
T 3u61_B 230 LSLVTN 235 (324)
T ss_dssp ------
T ss_pred HHHHhC
Confidence 877643
No 66
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.98 E-value=8.5e-09 Score=124.09 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=40.3
Q ss_pred CCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCC
Q psy17703 661 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP 713 (720)
Q Consensus 661 d~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p 713 (720)
..++.++||+++++......++..|++..+.-++ |....+ .++.||+++|+
T Consensus 660 ~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~-g~~vd~-~~~iiI~tsn~ 710 (854)
T 1qvr_A 660 PYSVILFDEIEKAHPDVFNILLQILDDGRLTDSH-GRTVDF-RNTVIILTSNL 710 (854)
T ss_dssp SSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSS-SCCEEC-TTEEEEEECCT
T ss_pred CCeEEEEecccccCHHHHHHHHHHhccCceECCC-CCEecc-CCeEEEEecCc
Confidence 3467899999999999999999999999887433 444443 35779999997
No 67
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.97 E-value=8.2e-10 Score=118.58 Aligned_cols=149 Identities=23% Similarity=0.321 Sum_probs=88.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCcc----ccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQY----TSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~----~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
|+||+||||||||++++++++.+....+ .....+...+. ...++. .+.+ .+.+....+...+++|||++.|+
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~--~~ir~~-i~~~-~~~~~~~~~~~~viiiDe~~~l~ 123 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGI--DVVRNQ-IKDF-ASTRQIFSKGFKLIILDEADAMT 123 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSH--HHHHTH-HHHH-HHBCCSSSCSCEEEEETTGGGSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccH--HHHHHH-HHHH-HhhcccCCCCceEEEEeCCCCCC
Confidence 6999999999999999999997632110 00000000000 000100 0000 00111112346799999999999
Q ss_pred hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHH
Q psy17703 423 DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDA 502 (720)
Q Consensus 423 ~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~ 502 (720)
.+.+++|+.+||+. +..+.++.++|... .+.+++.|||. .+.+.+++.++...
T Consensus 124 ~~~~~~L~~~le~~-------------~~~~~~il~~n~~~-------------~i~~~i~sR~~-~~~~~~l~~~~~~~ 176 (340)
T 1sxj_C 124 NAAQNALRRVIERY-------------TKNTRFCVLANYAH-------------KLTPALLSQCT-RFRFQPLPQEAIER 176 (340)
T ss_dssp HHHHHHHHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHTTSE-EEECCCCCHHHHHH
T ss_pred HHHHHHHHHHHhcC-------------CCCeEEEEEecCcc-------------ccchhHHhhce-eEeccCCCHHHHHH
Confidence 99999999999864 23455666777432 57899999997 67777776655433
Q ss_pred HHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703 503 RLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT 539 (720)
Q Consensus 503 ~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~ 539 (720)
.+. ..-+.-...+++++.+.+...
T Consensus 177 ~l~-------------~~~~~~~~~i~~~~~~~i~~~ 200 (340)
T 1sxj_C 177 RIA-------------NVLVHEKLKLSPNAEKALIEL 200 (340)
T ss_dssp HHH-------------HHHHTTTCCBCHHHHHHHHHH
T ss_pred HHH-------------HHHHHcCCCCCHHHHHHHHHH
Confidence 332 111112345777777766543
No 68
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.96 E-value=1.3e-09 Score=114.89 Aligned_cols=181 Identities=18% Similarity=0.242 Sum_probs=106.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC-CC---ccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP-RS---QYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p-r~---~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
-|+||+||||||||++++++++.+. .. .+.....+...+. ...++ ....+. ....+..+..++++|||++.+
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~-~~~~~~~~~~~vliiDe~~~l 114 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI--DVVRH-KIKEFA-RTAPIGGAPFKIIFLDEADAL 114 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT--TTSSH-HHHHHH-HSCCSSSCCCEEEEEETGGGS
T ss_pred CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh--HHHHH-HHHHHH-hcCCCCCCCceEEEEeCCCcC
Confidence 3799999999999999999998651 11 0000000000000 00000 000000 001111234689999999999
Q ss_pred ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHH
Q psy17703 422 SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFD 501 (720)
Q Consensus 422 ~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d 501 (720)
+.+.+++|+..||+ .+.++.+|+++|... .+.+++.+||. .+.+.+++.++..
T Consensus 115 ~~~~~~~L~~~le~-------------~~~~~~~i~~~~~~~-------------~l~~~l~sr~~-~i~~~~~~~~~~~ 167 (319)
T 2chq_A 115 TADAQAALRRTMEM-------------YSKSCRFILSCNYVS-------------RIIEPIQSRCA-VFRFKPVPKEAMK 167 (319)
T ss_dssp CHHHHHTTGGGTSS-------------SSSSEEEEEEESCGG-------------GSCHHHHTTCE-EEECCCCCHHHHH
T ss_pred CHHHHHHHHHHHHh-------------cCCCCeEEEEeCChh-------------hcchHHHhhCe-EEEecCCCHHHHH
Confidence 99999999888864 235677888887542 47899999997 7778777765543
Q ss_pred HHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCH
Q psy17703 502 ARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEV 581 (720)
Q Consensus 502 ~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~ 581 (720)
..+. ..-......+++++.+.+.... ..++|.+..++..+ +.. ...++.
T Consensus 168 ~~l~-------------~~~~~~~~~i~~~~l~~l~~~~-------------~G~~r~~~~~l~~~---~~~--~~~i~~ 216 (319)
T 2chq_A 168 KRLL-------------EICEKEGVKITEDGLEALIYIS-------------GGDFRKAINALQGA---AAI--GEVVDA 216 (319)
T ss_dssp HHHH-------------HHHHTTCCCBCHHHHHHHHHTT-------------TTCHHHHHHHHHHH---HHS--SSCBCH
T ss_pred HHHH-------------HHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHH---HHc--CCCCCH
Confidence 3322 2212234567888887776321 23457666555432 222 356888
Q ss_pred HhHHHHH
Q psy17703 582 QDVDEAW 588 (720)
Q Consensus 582 ~Dv~~Ai 588 (720)
+++..++
T Consensus 217 ~~v~~~~ 223 (319)
T 2chq_A 217 DTIYQIT 223 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8887763
No 69
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.94 E-value=1.6e-09 Score=120.67 Aligned_cols=197 Identities=15% Similarity=0.185 Sum_probs=117.9
Q ss_pred hhhcCCC-CccEEEEcCCCCHHHHHHHHHHhhCCCC------ccccCCccccccccceeecCccccceeeecceeeec-C
Q psy17703 338 RLQETPA-EINILLCGDPGTSKSQLLSYVYDLVPRS------QYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLA-D 409 (720)
Q Consensus 338 klQE~pg-~i~vLL~G~PGtGKS~ll~~va~~~pr~------~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~la-d 409 (720)
.+-+.|+ .-+++|+||||+|||+|++++++.+.+. .|.+..... ..+... ........+. -.+. .
T Consensus 122 ~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~-~~~~~~-~~~~~~~~~~-----~~~~~~ 194 (440)
T 2z4s_A 122 EVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL-NDLVDS-MKEGKLNEFR-----EKYRKK 194 (440)
T ss_dssp HHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH-HHHHHH-HHTTCHHHHH-----HHHTTT
T ss_pred HHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH-HHHHHH-HHcccHHHHH-----HHhcCC
Confidence 3344454 5689999999999999999999866211 111110000 000000 0000000000 0012 4
Q ss_pred CceeeccccccCCh--HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703 410 SGVCCIDEFDKMSD--TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD 487 (720)
Q Consensus 410 ~gI~~IDEidkm~~--~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd 487 (720)
..+++|||++.+.. ..+..|+..++... ..| ...|+++.||.. . -..+.++|++||.
T Consensus 195 ~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~----~~~-------~~iIitt~~~~~-~---------l~~l~~~L~sR~~ 253 (440)
T 2z4s_A 195 VDILLIDDVQFLIGKTGVQTELFHTFNELH----DSG-------KQIVICSDREPQ-K---------LSEFQDRLVSRFQ 253 (440)
T ss_dssp CSEEEEECGGGGSSCHHHHHHHHHHHHHHH----TTT-------CEEEEEESSCGG-G---------CSSCCHHHHHHHH
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHH----HCC-------CeEEEEECCCHH-H---------HHHHHHHHHhhcc
Confidence 67999999999986 67778888876421 111 133444444332 1 1137899999997
Q ss_pred --eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703 488 --LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR 565 (720)
Q Consensus 488 --li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir 565 (720)
+++.+.+|+.++....+. ++.. . ....+++++.+.|.... +.++|.++.+++
T Consensus 254 ~g~~i~l~~p~~e~r~~iL~---------~~~~---~-~~~~i~~e~l~~la~~~-------------~gn~R~l~~~L~ 307 (440)
T 2z4s_A 254 MGLVAKLEPPDEETRKSIAR---------KMLE---I-EHGELPEEVLNFVAENV-------------DDNLRRLRGAII 307 (440)
T ss_dssp SSBCCBCCCCCHHHHHHHHH---------HHHH---H-HTCCCCTTHHHHHHHHC-------------CSCHHHHHHHHH
T ss_pred CCeEEEeCCCCHHHHHHHHH---------HHHH---H-cCCCCCHHHHHHHHHhc-------------CCCHHHHHHHHH
Confidence 778888877665543333 2211 1 23457788877776431 245799999999
Q ss_pred HHHHHHHHcCCCCCCHHhHHHHHH
Q psy17703 566 LSEAHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 566 la~A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
.+.+.|...++ .|+.+++.+|+.
T Consensus 308 ~~~~~a~~~~~-~It~~~~~~~l~ 330 (440)
T 2z4s_A 308 KLLVYKETTGK-EVDLKEAILLLK 330 (440)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHTS
T ss_pred HHHHHHHHhCC-CCCHHHHHHHHH
Confidence 99999988765 699999998865
No 70
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.94 E-value=1.4e-09 Score=117.87 Aligned_cols=142 Identities=15% Similarity=0.092 Sum_probs=93.6
Q ss_pred eeeccccccCChH--HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee-
Q psy17703 412 VCCIDEFDKMSDT--TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL- 488 (720)
Q Consensus 412 I~~IDEidkm~~~--~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl- 488 (720)
+++|||++.+... .+..|..+++..... ..+.++.+|+++|...-. ..+.+++.+||..
T Consensus 133 vlilDEi~~l~~~~~~~~~l~~l~~~~~~~--------~~~~~~~~I~~t~~~~~~----------~~l~~~l~~r~~~~ 194 (387)
T 2v1u_A 133 IIVLDEIDFLPKRPGGQDLLYRITRINQEL--------GDRVWVSLVGITNSLGFV----------ENLEPRVKSSLGEV 194 (387)
T ss_dssp EEEEETTTHHHHSTTHHHHHHHHHHGGGCC-------------CEEEEECSCSTTS----------SSSCHHHHTTTTSE
T ss_pred EEEEccHhhhcccCCCChHHHhHhhchhhc--------CCCceEEEEEEECCCchH----------hhhCHHHHhcCCCe
Confidence 8999999999876 677777776532100 014567889999865310 1478999999975
Q ss_pred EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE 568 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~ 568 (720)
.+.+.++..++....+. .++..+ .....+++++.+.+.++.. ..+..+|.+..+++.+.
T Consensus 195 ~i~l~~l~~~~~~~il~---------~~~~~~--~~~~~~~~~~~~~l~~~~~----------~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 195 ELVFPPYTAPQLRDILE---------TRAEEA--FNPGVLDPDVVPLCAALAA----------REHGDARRALDLLRVAG 253 (387)
T ss_dssp ECCBCCCCHHHHHHHHH---------HHHHHH--BCTTTBCSSHHHHHHHHHH----------SSSCCHHHHHHHHHHHH
T ss_pred EEeeCCCCHHHHHHHHH---------HHHHhh--ccCCCCCHHHHHHHHHHHH----------HhccCHHHHHHHHHHHH
Confidence 66677666555443333 222211 1134677788777765542 11345799999999998
Q ss_pred HHHHHcCCCCCCHHhHHHHHHHHH
Q psy17703 569 AHAKMRYSETVEVQDVDEAWRLHR 592 (720)
Q Consensus 569 A~A~l~~~~~V~~~Dv~~Ai~l~~ 592 (720)
..|..+.+..|+.+|+..|+.-..
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh
Confidence 888888889999999999987543
No 71
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.93 E-value=1.2e-09 Score=112.22 Aligned_cols=181 Identities=24% Similarity=0.247 Sum_probs=102.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecCccccceeeecce-eeec---CCceeeccccccC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKDPETRQMVLQTGA-LVLA---DSGVCCIDEFDKM 421 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~~~~~~~~~~~G~-l~la---d~gI~~IDEidkm 421 (720)
+++|+||||||||+|++++++.+....+ ..+. ..... ..+.....-+. +..+ ...++++||++.+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~--~~~~~--------~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l 120 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPFITASGS--DFVEM--------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 120 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH--HHHHS--------CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHH--HHHHH--------HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhh
Confidence 3999999999999999999998753221 1110 00000 00000000000 0011 2368999999865
Q ss_pred Ch-----------HH---HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--c
Q psy17703 422 SD-----------TT---RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--R 485 (720)
Q Consensus 422 ~~-----------~~---~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--R 485 (720)
.. .. ...++..|+.+. ......++|++|... .+++++++ |
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~-----------~~~~~i~~a~t~~p~-------------~ld~~l~r~~r 176 (254)
T 1ixz_A 121 GRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATNRPD-------------ILDPALLRPGR 176 (254)
T ss_dssp HC---------CHHHHHHHHHHHHHHHTCC-----------TTCCEEEEEEESCGG-------------GSCGGGGSTTS
T ss_pred hcccCccccccchHHHHHHHHHHHHHhCCC-----------CCCCEEEEEccCCch-------------hCCHHHcCCCc
Confidence 32 11 223333333211 122356788888553 37899998 9
Q ss_pred ceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHH-HHHHHHHHHHhhhcCCCCCCcccCHHHHHHHH
Q psy17703 486 FDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEA-SQRLIQTYVDMRKLGAGRGRISAYPRQLESLI 564 (720)
Q Consensus 486 Fdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea-~~~l~~~y~~lr~~~~~~~~~~~t~R~le~li 564 (720)
||..+.+..|+.+++.+.+..+ ++. . .+++++ ...+.. +. -..+.|.++.++
T Consensus 177 f~~~i~i~~p~~~~r~~il~~~------------~~~-~--~~~~~~~~~~la~-----~~-------~G~~~~dl~~~~ 229 (254)
T 1ixz_A 177 FDRQIAIDAPDVKGREQILRIH------------ARG-K--PLAEDVDLALLAK-----RT-------PGFVGADLENLL 229 (254)
T ss_dssp SCEEEECCSCCHHHHHHHHHHH------------HTT-S--CBCTTCCHHHHHH-----TC-------TTCCHHHHHHHH
T ss_pred CCeEEeeCCcCHHHHHHHHHHH------------HcC-C--CCCcccCHHHHHH-----Hc-------CCCCHHHHHHHH
Confidence 9999898888776654443321 111 1 122222 222221 10 113459999999
Q ss_pred HHHHHHHHHcCCCCCCHHhHHHHH
Q psy17703 565 RLSEAHAKMRYSETVEVQDVDEAW 588 (720)
Q Consensus 565 rla~A~A~l~~~~~V~~~Dv~~Ai 588 (720)
+-|...|..+.+..|+.+|+++|+
T Consensus 230 ~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 230 NEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHh
Confidence 988888888778889999999884
No 72
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.89 E-value=2.2e-09 Score=111.80 Aligned_cols=188 Identities=25% Similarity=0.311 Sum_probs=103.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC---
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS--- 422 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~--- 422 (720)
+++|+||||||||+|+++++..+....+. .+. ............ ..+ ..++. + ......++++||++.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~--~~~~~~~~~~~~-~i~-~~~~~-~-~~~~~~i~~iDeid~l~~~~ 148 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGS--DFVEMFVGVGAA-RVR-DLFET-A-KRHAPCIVFIDEIDAVGRKR 148 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH--HHHHSTTTHHHH-HHH-HHHHH-H-HTSCSEEEEEETHHHHHCC-
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEEecHH--HHHHHHhhHHHH-HHH-HHHHH-H-HhcCCcEEehhhhHhhhccc
Confidence 49999999999999999999987532211 110 000000000000 000 00000 0 00124689999998652
Q ss_pred --------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeEEEe
Q psy17703 423 --------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLIFLL 492 (720)
Q Consensus 423 --------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli~~l 492 (720)
...+..+.+.+.+ + .|.. ......++|++|... .+++++++ ||+..+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~ll~~----l--sgg~--~~~~~i~~a~t~~p~-------------~ld~~l~r~~rf~~~i~i 207 (278)
T 1iy2_A 149 GSGVGGGNDEREQTLNQLLVE----M--DGFE--KDTAIVVMAATNRPD-------------ILDPALLRPGRFDRQIAI 207 (278)
T ss_dssp -------CHHHHHHHHHHHHH----H--TTCC--TTCCEEEEEEESCTT-------------SSCHHHHSTTSSCCEEEC
T ss_pred ccccCCcchHHHHHHHHHHHH----H--hCCC--CCCCEEEEEecCCch-------------hCCHhHcCCCcCCeEEEe
Confidence 1222333333321 0 1110 122366788888653 47899998 99998888
Q ss_pred cCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHH-HHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHH
Q psy17703 493 LDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEA-SQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHA 571 (720)
Q Consensus 493 ~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea-~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A 571 (720)
..|+.+++.+.+..+ ++. ..+++++ ...+.. +. -..+.|+|+.+++-|...|
T Consensus 208 ~~p~~~~r~~il~~~------------~~~---~~~~~~~~~~~la~-----~~-------~G~~~~dl~~l~~~a~~~a 260 (278)
T 1iy2_A 208 DAPDVKGREQILRIH------------ARG---KPLAEDVDLALLAK-----RT-------PGFVGADLENLLNEAALLA 260 (278)
T ss_dssp CCCCHHHHHHHHHHH------------HTT---SCBCTTCCHHHHHH-----TC-------TTCCHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHH------------Hcc---CCCCcccCHHHHHH-----Hc-------CCCCHHHHHHHHHHHHHHH
Confidence 888766654443321 111 1222222 222211 10 1124599999999888888
Q ss_pred HHcCCCCCCHHhHHHHH
Q psy17703 572 KMRYSETVEVQDVDEAW 588 (720)
Q Consensus 572 ~l~~~~~V~~~Dv~~Ai 588 (720)
..+.+..|+.+|+++|+
T Consensus 261 ~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 261 AREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHTTCCSBCHHHHHHHT
T ss_pred HHhCCCCcCHHHHHHHh
Confidence 88778899999999885
No 73
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.84 E-value=5.8e-08 Score=104.81 Aligned_cols=185 Identities=22% Similarity=0.187 Sum_probs=106.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCccccCCc---------------ccccccccee-ecCccccceeeeccee-eecC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKG---------------SSAVGLTAYI-TKDPETRQMVLQTGAL-VLAD 409 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~---------------ss~~glta~~-~~~~~~~~~~~~~G~l-~lad 409 (720)
.+||+||||||||++++++++.+.......... .....+.+.. ..........-..... ....
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 119 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCC
Confidence 579999999999999999998664321110000 0000000000 0000000000000000 1123
Q ss_pred CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
..+++|||++.|+.+.++.|+..+|+ .+.++.+|.++|... .+++++.+|+ ..
T Consensus 120 ~~vliiDe~~~l~~~~~~~Ll~~le~-------------~~~~~~~Il~~~~~~-------------~l~~~l~sr~-~~ 172 (373)
T 1jr3_A 120 FKVYLIDEVHMLSRHSFNALLKTLEE-------------PPEHVKFLLATTDPQ-------------KLPVTILSRC-LQ 172 (373)
T ss_dssp SEEEEEECGGGSCHHHHHHHHHHHHS-------------CCSSEEEEEEESCGG-------------GSCHHHHTTS-EE
T ss_pred eEEEEEECcchhcHHHHHHHHHHHhc-------------CCCceEEEEEeCChH-------------hCcHHHHhhe-eE
Confidence 56999999999999999999999975 244566777776321 4788999999 47
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
+.+..++.++....+. .+. + .....+++++.+.+.+.. ..++|.+..++.-+..
T Consensus 173 i~~~~l~~~~~~~~l~---------~~~---~-~~~~~~~~~a~~~l~~~~-------------~G~~r~~~~~l~~~~~ 226 (373)
T 1jr3_A 173 FHLKALDVEQIRHQLE---------HIL---N-EEHIAHEPRALQLLARAA-------------EGSLRDALSLTDQAIA 226 (373)
T ss_dssp EECCCCCHHHHHHHHH---------HHH---H-HHTCCBCHHHHHHHHHHS-------------SSCHHHHHHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHH---------HHH---H-HcCCCCCHHHHHHHHHHC-------------CCCHHHHHHHHHHHHH
Confidence 7777776655433322 111 1 123457788877766431 2346877777654422
Q ss_pred HHHHcCCCCCCHHhHHHHH
Q psy17703 570 HAKMRYSETVEVQDVDEAW 588 (720)
Q Consensus 570 ~A~l~~~~~V~~~Dv~~Ai 588 (720)
. ....++.+|+.+++
T Consensus 227 ~----~~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 227 S----GDGQVSTQAVSAML 241 (373)
T ss_dssp H----TTTCBCHHHHHHHT
T ss_pred h----cCCcccHHHHHHHh
Confidence 2 24678999988764
No 74
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.83 E-value=7.5e-10 Score=114.95 Aligned_cols=173 Identities=13% Similarity=0.195 Sum_probs=92.9
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC--
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM-- 421 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm-- 421 (720)
...++||+||||||||++++++++.+....+.-.......|........ .... .++ .......++++|||++.+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~-~~~~-~~~--~~~~~~~~vl~iDEid~l~~ 138 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQ-AMKK-IFD--DAYKSQLSCVVVDDIERLLD 138 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHH-HHHH-HHH--HHHTSSEEEEEECCHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHH-HHHH-HHH--HHHhcCCcEEEEEChhhhhc
Confidence 3569999999999999999999997543211100000011110000000 0000 000 001134689999999987
Q ss_pred --------ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCCh-hhhccceeEEEe
Q psy17703 422 --------SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPH-TLLSRFDLIFLL 492 (720)
Q Consensus 422 --------~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~-aLlsRFdli~~l 492 (720)
....+..|.+.++.. ...+.++.+++|+|+.. .+++ .+.+||+..+.+
T Consensus 139 ~~~~~~~~~~~~l~~L~~~~~~~----------~~~~~~~~ii~ttn~~~-------------~l~~~~l~~rf~~~i~~ 195 (272)
T 1d2n_A 139 YVPIGPRFSNLVLQALLVLLKKA----------PPQGRKLLIIGTTSRKD-------------VLQEMEMLNAFSTTIHV 195 (272)
T ss_dssp CBTTTTBCCHHHHHHHHHHTTCC----------CSTTCEEEEEEEESCHH-------------HHHHTTCTTTSSEEEEC
T ss_pred cCCCChhHHHHHHHHHHHHhcCc----------cCCCCCEEEEEecCChh-------------hcchhhhhcccceEEcC
Confidence 333344444444311 11234678999999653 2334 678999988888
Q ss_pred cCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703 493 LDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE 568 (720)
Q Consensus 493 ~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~ 568 (720)
++..+.+. +..++.. ...+++++.+.+..... + -+++...|++..+++.+.
T Consensus 196 p~l~~r~~------------i~~i~~~-----~~~~~~~~~~~l~~~~~-----g---~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 196 PNIATGEQ------------LLEALEL-----LGNFKDKERTTIAQQVK-----G---KKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp CCEEEHHH------------HHHHHHH-----HTCSCHHHHHHHHHHHT-----T---SEEEECHHHHHHHHHHHT
T ss_pred CCccHHHH------------HHHHHHh-----cCCCCHHHHHHHHHHhc-----C---CCccccHHHHHHHHHHHh
Confidence 76655321 1122211 12456777666654321 1 124556788888777663
No 75
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.83 E-value=3.2e-08 Score=129.31 Aligned_cols=191 Identities=16% Similarity=0.165 Sum_probs=129.8
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccc--cCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYT--SGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~--~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
-..++++.||||||||.+++++|+.+.+..+. +..+.+...+ +.. -.|+ ...|.++|+|||+++
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~l----------g~~--~~g~--~~~Gaw~~~DE~nr~ 709 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVL----------SRL--LVGI--TQIGAWGCFDEFNRL 709 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHH----------HHH--HHHH--HHHTCEEEEETTTSS
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHh----------hHH--HHHH--HhcCCEeeehhhhhc
Confidence 35689999999999999999999998775432 1112111111 000 0111 123678999999999
Q ss_pred ChHHHHHH-------HHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecC
Q psy17703 422 SDTTRSIL-------HEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLD 494 (720)
Q Consensus 422 ~~~~~~~L-------~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d 494 (720)
+++.++++ +++|.++..++.-.|....++..|.+++|+||.+. + ...||++|.+||- -+.+..
T Consensus 710 ~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~---g------~~eLP~~Lk~~Fr-~v~m~~ 779 (2695)
T 4akg_A 710 DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYN---G------RSELPENLKKSFR-EFSMKS 779 (2695)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSS---S------SCCCCHHHHTTEE-EEECCC
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCcc---C------cccccHHHHhheE-EEEeeC
Confidence 99998877 77787777666668889999999999999999432 2 2369999999995 444544
Q ss_pred CChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHc
Q psy17703 495 PQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMR 574 (720)
Q Consensus 495 ~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~ 574 (720)
|+.+.. .+.+.++. .+.........++..|..+|..-+...+.....|.+.++++.|....+-.
T Consensus 780 Pd~~~i-------------~ei~l~s~---Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr~~ 843 (2695)
T 4akg_A 780 PQSGTI-------------AEMILQIM---GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEF 843 (2695)
T ss_dssp CCHHHH-------------HHHHHHHH---HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHH-------------HHHHHHhc---CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhccC
Confidence 443322 11112222 23445667778888888877755555566667799999999876655443
No 76
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.82 E-value=2.4e-08 Score=105.31 Aligned_cols=182 Identities=16% Similarity=0.170 Sum_probs=105.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
|+||+||||+|||++++.+++.+... .+.....+...+. ...++.. ..+......+......+++|||++.++
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~i~~~~-~~~~~~~~~~~~~~~~viiiDe~~~l~ 120 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGI--DVVRNQI-KHFAQKKLHLPPGKHKIVILDEADSMT 120 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSH--HHHHTHH-HHHHHBCCCCCTTCCEEEEEESGGGSC
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccCh--HHHHHHH-HHHHhccccCCCCCceEEEEECcccCC
Confidence 59999999999999999999865210 0111011110000 0000000 000000000001235699999999999
Q ss_pred hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHH
Q psy17703 423 DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDA 502 (720)
Q Consensus 423 ~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~ 502 (720)
.+.+++|+..+|+. +..+.+|.++|+.. .+++++.+|+. .+.+.+++.++...
T Consensus 121 ~~~~~~L~~~le~~-------------~~~~~~il~~~~~~-------------~l~~~l~sr~~-~i~~~~~~~~~~~~ 173 (323)
T 1sxj_B 121 AGAQQALRRTMELY-------------SNSTRFAFACNQSN-------------KIIEPLQSQCA-ILRYSKLSDEDVLK 173 (323)
T ss_dssp HHHHHTTHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHTTSE-EEECCCCCHHHHHH
T ss_pred HHHHHHHHHHHhcc-------------CCCceEEEEeCChh-------------hchhHHHhhce-EEeecCCCHHHHHH
Confidence 99999999999863 24466777777532 47899999997 77787777665443
Q ss_pred HHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHH
Q psy17703 503 RLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQ 582 (720)
Q Consensus 503 ~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~ 582 (720)
.+.. + ++. ....+++++.+.+.+.. ..++|.+..++.-... . ...++.+
T Consensus 174 ~l~~---------~---~~~-~~~~~~~~~~~~l~~~~-------------~G~~r~a~~~l~~~~~---~--~~~i~~~ 222 (323)
T 1sxj_B 174 RLLQ---------I---IKL-EDVKYTNDGLEAIIFTA-------------EGDMRQAINNLQSTVA---G--HGLVNAD 222 (323)
T ss_dssp HHHH---------H---HHH-HTCCBCHHHHHHHHHHH-------------TTCHHHHHHHHHHHHH---H--HSSBCHH
T ss_pred HHHH---------H---HHH-cCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHHh---c--CCCcCHH
Confidence 3331 1 111 23457788877776542 1235766665543321 1 1468888
Q ss_pred hHHHHHH
Q psy17703 583 DVDEAWR 589 (720)
Q Consensus 583 Dv~~Ai~ 589 (720)
++.+++.
T Consensus 223 ~v~~~~~ 229 (323)
T 1sxj_B 223 NVFKIVD 229 (323)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 8877754
No 77
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.79 E-value=2.4e-07 Score=99.42 Aligned_cols=91 Identities=13% Similarity=0.230 Sum_probs=62.4
Q ss_pred CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703 409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL 488 (720)
Q Consensus 409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl 488 (720)
+..+++|||++.|+.+.+++|+..|++. +.++.+|.++|... .+++++.||| .
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~-------------~~~~~~Il~t~~~~-------------~l~~~l~sR~-~ 186 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKY-------------SKNIRLIMVCDSMS-------------PIIAPIKSQC-L 186 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHS-------------TTTEEEEEEESCSC-------------SSCHHHHTTS-E
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhh-------------cCCCEEEEEeCCHH-------------HHHHHHHhhc-e
Confidence 4559999999999999999999999863 23456666666432 3789999999 6
Q ss_pred EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcch-HHHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLS-EEASQRLIQT 539 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls-~ea~~~l~~~ 539 (720)
.+.+.+++.++....+.. ........++ +++.+.+...
T Consensus 187 ~~~~~~~~~~~~~~~l~~-------------~~~~~~~~~~~~~~l~~i~~~ 225 (354)
T 1sxj_E 187 LIRCPAPSDSEISTILSD-------------VVTNERIQLETKDILKRIAQA 225 (354)
T ss_dssp EEECCCCCHHHHHHHHHH-------------HHHHHTCEECCSHHHHHHHHH
T ss_pred EEecCCcCHHHHHHHHHH-------------HHHHcCCCCCcHHHHHHHHHH
Confidence 788888876654433331 1111234566 7777777643
No 78
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.78 E-value=1.2e-08 Score=110.73 Aligned_cols=134 Identities=17% Similarity=0.209 Sum_probs=88.9
Q ss_pred eeeccccccCChHH-HHH-HHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703 412 VCCIDEFDKMSDTT-RSI-LHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI 489 (720)
Q Consensus 412 I~~IDEidkm~~~~-~~~-L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli 489 (720)
+++|||++.+.... +.. +...++.. .++.+|+++|...- ...+.+++++||...
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~--------------~~~~iI~~t~~~~~----------~~~l~~~l~sr~~~~ 191 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD--------------ANISVIMISNDINV----------RDYMEPRVLSSLGPS 191 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS--------------SCEEEEEECSSTTT----------TTTSCHHHHHTCCCE
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC--------------cceEEEEEECCCch----------HhhhCHHHHhcCCCe
Confidence 99999999987642 455 55554321 56788999986531 014789999999878
Q ss_pred EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA 569 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A 569 (720)
+.+.++..++....+.. ++.. ..-...+++++.+.+.+... ..+..+|.+..+++.+..
T Consensus 192 i~l~~l~~~~~~~il~~---------~~~~--~~~~~~~~~~~~~~i~~~~~----------~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 192 VIFKPYDAEQLKFILSK---------YAEY--GLIKGTYDDEILSYIAAISA----------KEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp EEECCCCHHHHHHHHHH---------HHHH--TSCTTSCCSHHHHHHHHHHH----------TTCCCHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHH---------HHHh--hcccCCcCHHHHHHHHHHHH----------hccCCHHHHHHHHHHHHH
Confidence 88888776654433332 2211 11124678888887776542 123457988888888877
Q ss_pred HHHHcCCCCCCHHhHHHHHHHHH
Q psy17703 570 HAKMRYSETVEVQDVDEAWRLHR 592 (720)
Q Consensus 570 ~A~l~~~~~V~~~Dv~~Ai~l~~ 592 (720)
.|. ....|+.+|+..|+.-..
T Consensus 251 ~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 251 LAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HTT--SSSCCCHHHHHHHHHHHH
T ss_pred Hhc--CCCccCHHHHHHHHHHHh
Confidence 765 567899999999987543
No 79
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.78 E-value=3.2e-08 Score=110.98 Aligned_cols=186 Identities=14% Similarity=0.141 Sum_probs=100.7
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCccccccccceeecCccccceeeecc----eeeecCCceeecccc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYITKDPETRQMVLQTG----ALVLADSGVCCIDEF 418 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~~~~~~~~~~~~~~G----~l~lad~gI~~IDEi 418 (720)
..-|+||+||||||||+++++++..+.+.... ...+...+.+..+ ....|++..... .+..+.++|+|||
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-- 274 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-- 274 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC--
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe--
Confidence 45699999999999999999999976332111 0011111111111 011111111000 1111347899999
Q ss_pred ccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChH
Q psy17703 419 DKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSE 498 (720)
Q Consensus 419 dkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~ 498 (720)
...+.++.|+.+|+.+ ++.+|+|+|+...+ ..+.++++|++||. .+.+..|+.+
T Consensus 275 --~~~~a~~~L~~~L~~g---------------~v~vI~at~~~e~~--------~~~~~~~al~~Rf~-~i~v~~p~~e 328 (468)
T 3pxg_A 275 --AAIDASNILKPSLARG---------------ELQCIGATTLDEYR--------KYIEKDAALERRFQ-PIQVDQPSVD 328 (468)
T ss_dssp --C--------CCCTTSS---------------SCEEEEECCTTTTH--------HHHTTCSHHHHSEE-EEECCCCCHH
T ss_pred --CchhHHHHHHHhhcCC---------------CEEEEecCCHHHHH--------HHhhcCHHHHHhCc-cceeCCCCHH
Confidence 4555666677766533 46789999976421 22458899999998 4777777766
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCC
Q psy17703 499 QFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYS 576 (720)
Q Consensus 499 ~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~ 576 (720)
+....+..... .........+++++...+..+.... ... ...|+....+++-+.+.++++..
T Consensus 329 ~~~~iL~~~~~---------~~~~~~~~~i~~~al~~l~~~s~~~----~~~---~~lp~~ai~ll~~a~~~~~~~~~ 390 (468)
T 3pxg_A 329 ESIQILQGLRD---------RYEAHHRVSITDDAIEAAVKLSDRY----ISD---RFLPDKAIDLIDEAGSKVRLRSF 390 (468)
T ss_dssp HHHHHHHHTTT---------TSGGGSSCSCCHHHHHHHHHHHHHS----SCC---SCTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH---------HHHHhcCCCCCHHHHHHHHHHHHHH----hcc---CcCCcHHHHHHHHHHHHHHhccC
Confidence 65444442211 1011234568888888877554221 111 12357788888888888887754
No 80
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.77 E-value=1.1e-08 Score=109.02 Aligned_cols=189 Identities=15% Similarity=0.194 Sum_probs=102.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCC----CccccCCccccccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPR----SQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK 420 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr----~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk 420 (720)
.-+++|+||||||||++++++++.+.+ ..|.+.... ...+....... ....+. . .....++++|||++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~-~~~~~~---~--~~~~~~vL~iDEi~~ 109 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF-AQAMVEHLKKG-TINEFR---N--MYKSVDLLLLDDVQF 109 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-HHHHHHHHHHT-CHHHHH---H--HHHTCSEEEEECGGG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH-HHHHHHHHHcC-cHHHHH---H--HhcCCCEEEEcCccc
Confidence 468999999999999999999987632 111111000 00000000000 000000 0 023468999999999
Q ss_pred CCh--HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCC
Q psy17703 421 MSD--TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQ 496 (720)
Q Consensus 421 m~~--~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~ 496 (720)
++. ..+..++..++... ..| ...|+++.|+.. +-..++++|++||+ +++.+.+ +
T Consensus 110 l~~~~~~~~~l~~~l~~~~----~~~-------~~iii~~~~~~~----------~l~~l~~~L~sR~~~~~~i~l~~-~ 167 (324)
T 1l8q_A 110 LSGKERTQIEFFHIFNTLY----LLE-------KQIILASDRHPQ----------KLDGVSDRLVSRFEGGILVEIEL-D 167 (324)
T ss_dssp GTTCHHHHHHHHHHHHHHH----HTT-------CEEEEEESSCGG----------GCTTSCHHHHHHHHTSEEEECCC-C
T ss_pred ccCChHHHHHHHHHHHHHH----HCC-------CeEEEEecCChH----------HHHHhhhHhhhcccCceEEEeCC-C
Confidence 986 56777777765321 011 123455544432 11147899999997 6777777 5
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHH--H--
Q psy17703 497 SEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHA--K-- 572 (720)
Q Consensus 497 ~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A--~-- 572 (720)
.++....+. .++ + .....+++++.+.+..+. .+.|.++.++..+.+.. .
T Consensus 168 ~~e~~~il~---------~~~---~-~~~~~l~~~~l~~l~~~~--------------g~~r~l~~~l~~~~~~~~~~l~ 220 (324)
T 1l8q_A 168 NKTRFKIIK---------EKL---K-EFNLELRKEVIDYLLENT--------------KNVREIEGKIKLIKLKGFEGLE 220 (324)
T ss_dssp HHHHHHHHH---------HHH---H-HTTCCCCHHHHHHHHHHC--------------SSHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHH---------HHH---H-hcCCCCCHHHHHHHHHhC--------------CCHHHHHHHHHHHHHcCHHHhc
Confidence 554433322 211 1 134578888888876542 13488888776554440 0
Q ss_pred HcCCCCC-CHHhHHHHHH
Q psy17703 573 MRYSETV-EVQDVDEAWR 589 (720)
Q Consensus 573 l~~~~~V-~~~Dv~~Ai~ 589 (720)
+.....+ +.+++.+++.
T Consensus 221 ~~~~~~i~t~~~i~~~~~ 238 (324)
T 1l8q_A 221 RKERKERDKLMQIVEFVA 238 (324)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHH
Confidence 1112245 6666666654
No 81
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.76 E-value=3.5e-08 Score=106.93 Aligned_cols=210 Identities=13% Similarity=0.091 Sum_probs=120.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCC-----ccccCCccc-cccccceee---cC--cccc----ceeeecceeeecCC-
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPRS-----QYTSGKGSS-AVGLTAYIT---KD--PETR----QMVLQTGALVLADS- 410 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr~-----~~~~g~~ss-~~glta~~~---~~--~~~~----~~~~~~G~l~lad~- 410 (720)
+++|+||||+|||++++.+++.+... ++..+.... ...+..... .. +..+ ...-.........+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 89999999999999999999877432 111111100 000000000 00 0000 00000000001123
Q ss_pred -ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee-
Q psy17703 411 -GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL- 488 (720)
Q Consensus 411 -gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl- 488 (720)
-+++|||++.++.+.+..|..++++.. .. ...++.+|+++|... +.+ .+.+++.+||..
T Consensus 126 ~~vlilDE~~~l~~~~~~~L~~~~~~~~----~~-----~~~~~~iI~~~~~~~--------~~~--~l~~~~~~r~~~~ 186 (389)
T 1fnn_A 126 YMFLVLDDAFNLAPDILSTFIRLGQEAD----KL-----GAFRIALVIVGHNDA--------VLN--NLDPSTRGIMGKY 186 (389)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHTTCHH----HH-----SSCCEEEEEEESSTH--------HHH--TSCHHHHHHHTTC
T ss_pred eEEEEEECccccchHHHHHHHHHHHhCC----CC-----CcCCEEEEEEECCch--------HHH--HhCHHhhhcCCCc
Confidence 389999999999888888888875421 00 013577888887431 111 367889999985
Q ss_pred EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE 568 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~ 568 (720)
.+.+.+++.++....+. .++..+. ....+++++.+.+.+..... .........+|.+..+++.+.
T Consensus 187 ~i~~~pl~~~~~~~~l~---------~~~~~~~--~~~~~~~~~~~~l~~~~~~~----~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 187 VIRFSPYTKDQIFDILL---------DRAKAGL--AEGSYSEDILQMIADITGAQ----TPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp EEECCCCBHHHHHHHHH---------HHHHHHB--CTTSSCHHHHHHHHHHHSBS----STTCTTSCCHHHHHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHH---------HHHHhhc--CCCCCCHHHHHHHHHHHhhc----ccCCCCCCcHHHHHHHHHHHH
Confidence 66777666554433322 2222111 13467888888776543100 000111346799999999998
Q ss_pred HHHHHcCCCCCCHHhHHHHHHH
Q psy17703 569 AHAKMRYSETVEVQDVDEAWRL 590 (720)
Q Consensus 569 A~A~l~~~~~V~~~Dv~~Ai~l 590 (720)
..|..+....++.+|+..|+.-
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~ 273 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKE 273 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHH
Confidence 8888888889999999998663
No 82
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.69 E-value=3.4e-08 Score=102.89 Aligned_cols=124 Identities=21% Similarity=0.190 Sum_probs=71.7
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCCCC-ccccCCccccccccceeecCccccceeeecceee----ecCCceeeccccccCC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLVPRS-QYTSGKGSSAVGLTAYITKDPETRQMVLQTGALV----LADSGVCCIDEFDKMS 422 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~----lad~gI~~IDEidkm~ 422 (720)
++|+||||||||+|+++++..+... ++..+...... ..++....-+.+. .....++++||++.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~----------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~ 116 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM----------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALC 116 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS----------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh----------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhh
Confidence 9999999999999999999987542 22222211100 0000000000000 0124689999999864
Q ss_pred hH-----------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeE
Q psy17703 423 DT-----------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLI 489 (720)
Q Consensus 423 ~~-----------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli 489 (720)
.. ..+.+...|..+. ......++|++|... .|++++++ |||..
T Consensus 117 ~~r~~~~~~~~~~~~~~~l~~Lsgg~-----------~~~~~i~ia~tn~p~-------------~LD~al~r~gRfd~~ 172 (274)
T 2x8a_A 117 PRRSDRETGASVRVVNQLLTEMDGLE-----------ARQQVFIMAATNRPD-------------IIDPAILRPGRLDKT 172 (274)
T ss_dssp C---------CTTHHHHHHHHHHTCC-----------STTCEEEEEEESCGG-------------GSCHHHHSTTSSCEE
T ss_pred cccCCCcchHHHHHHHHHHHhhhccc-----------ccCCEEEEeecCChh-------------hCCHhhcCcccCCeE
Confidence 21 1223333343211 112356788888654 47899998 99998
Q ss_pred EEecCCChHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLA 505 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la 505 (720)
+.+..|..+++.+.+.
T Consensus 173 i~~~~P~~~~r~~il~ 188 (274)
T 2x8a_A 173 LFVGLPPPADRLAILK 188 (274)
T ss_dssp EECCSCCHHHHHHHHH
T ss_pred EEeCCcCHHHHHHHHH
Confidence 8888777666554444
No 83
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.67 E-value=7.8e-09 Score=121.86 Aligned_cols=129 Identities=19% Similarity=0.248 Sum_probs=74.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccc----cccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSS----AVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss----~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
..+||+||||||||++++++|..+....+. -..+. .+|.+...++. ....+- .....|+||||+|.+
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~-v~~~~l~s~~vGese~~vr~-----lF~~Ar---~~~P~IifiDEiDsl 582 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQANFIS-IKGPELLTMWFGESEANVRE-----IFDKAR---QAAPCVLFFDELDSI 582 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCEEEE-CCHHHHHTTTCSSCHHHHHH-----HHHHHH---TTCSEEEECSCGGGC
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCceEE-eccchhhccccchHHHHHHH-----HHHHHH---HcCCceeechhhhHH
Confidence 479999999999999999999987543321 11111 11111111110 000000 113579999999987
Q ss_pred ChH--------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--c
Q psy17703 422 SDT--------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--R 485 (720)
Q Consensus 422 ~~~--------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--R 485 (720)
-.. ..+.|+..|+.-. -..++.||||+|..+ .|+++|++ |
T Consensus 583 ~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~-----------~~~~V~vi~aTN~p~-------------~lD~AllRpgR 638 (806)
T 3cf2_A 583 AKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVFIIGATNRPD-------------IIDPAILRPGR 638 (806)
T ss_dssp C--------------CHHHHHHHHHHHSSC-----------SSSSEEEECC-CCSS-------------SSCHHHHSTTT
T ss_pred hhccCCCCCCCchHHHHHHHHHHHHHhCCC-----------CCCCEEEEEeCCCch-------------hCCHhHcCCCc
Confidence 432 2345566665211 124578999999765 58999999 9
Q ss_pred ceeEEEecCCChHHHHHHHHhh
Q psy17703 486 FDLIFLLLDPQSEQFDARLARH 507 (720)
Q Consensus 486 Fdli~~l~d~~~~~~d~~la~~ 507 (720)
||.++.+..|..+.+...+..|
T Consensus 639 fd~~i~v~lPd~~~R~~il~~~ 660 (806)
T 3cf2_A 639 LDQLIYIPLPDEKSRVAILKAN 660 (806)
T ss_dssp SCCEEEC-----CHHHHTTTTT
T ss_pred ceEEEEECCcCHHHHHHHHHHH
Confidence 9998888877655554444433
No 84
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.66 E-value=1.1e-08 Score=120.55 Aligned_cols=131 Identities=23% Similarity=0.231 Sum_probs=82.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCc--cccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKG--SSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~--ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
-+|||+||||||||+|++++++.+....+. ++.. +...|.+...++. ...++- .....|+||||+|.+.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~-----lF~~A~---~~~PsIIfIDEiDal~ 310 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK-----AFEEAE---KNAPAIIFIDELDAIA 310 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHH-----HHHHHT---TSCSEEEEEESGGGTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHH-----HHHHHH---HcCCeEEEEehhcccc
Confidence 489999999999999999999877543321 1100 0011111111100 000000 1125799999999975
Q ss_pred hH-----------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeE
Q psy17703 423 DT-----------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLI 489 (720)
Q Consensus 423 ~~-----------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli 489 (720)
+. ..+.|+..|+.-. -..++.||||+|... .|+++|++ |||..
T Consensus 311 ~~r~~~~~~~~~riv~~LL~~mdg~~-----------~~~~V~VIaaTN~~d-------------~LD~ALrR~GRFd~~ 366 (806)
T 3cf2_A 311 PKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATNRPN-------------SIDPALRRFGRFDRE 366 (806)
T ss_dssp CTTTTCCCTTHHHHHHHHHTHHHHCC-----------GGGCEEEEEECSSTT-------------TSCTTTTSTTSSCEE
T ss_pred cccCCCCChHHHHHHHHHHHHHhccc-----------ccCCEEEEEecCChh-------------hcCHHHhCCcccceE
Confidence 32 2344555564321 124578999999665 58999999 99999
Q ss_pred EEecCCChHHHHHHHHhhc
Q psy17703 490 FLLLDPQSEQFDARLARHL 508 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la~~i 508 (720)
+.+..|+.+.+.+.+..|.
T Consensus 367 I~i~~Pd~~~R~~IL~~~l 385 (806)
T 3cf2_A 367 VDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EECCCCCHHHHHHHHHHTC
T ss_pred EecCCCCHHHHHHHHHHHh
Confidence 9999888777777776654
No 85
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.65 E-value=1.3e-08 Score=111.80 Aligned_cols=61 Identities=43% Similarity=0.728 Sum_probs=56.2
Q ss_pred hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCCCC
Q psy17703 654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWN 719 (720)
Q Consensus 654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~~~ 719 (720)
.|.+..+++|+||+||+++|+.+++.+|+|+||+|+|++. |+ +|+++|+|+||+||.. +||
T Consensus 293 ~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~--G~--~lparf~VIAA~NP~~-~yd 353 (506)
T 3f8t_A 293 AGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD--GI--ALNARCAVLAAINPGE-QWP 353 (506)
T ss_dssp ECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET--TE--EEECCCEEEEEECCCC---C
T ss_pred CCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC--CE--EcCCCeEEEEEeCccc-ccC
Confidence 6778899999999999999999999999999999999998 77 9999999999999998 885
No 86
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.61 E-value=7.6e-09 Score=99.81 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=71.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCcccc-CCccccccccceee--cCccccceeeec----ceeeecC-Cceeecc
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTS-GKGSSAVGLTAYIT--KDPETRQMVLQT----GALVLAD-SGVCCID 416 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~-g~~ss~~glta~~~--~~~~~~~~~~~~----G~l~lad-~gI~~ID 416 (720)
..++||+|+||||||++++++++.+....+.. ..+........... .....+.+.... ..+...+ +.+++||
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iD 122 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID 122 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 46899999999999999999998763211100 00000011100000 000001000000 0000122 3489999
Q ss_pred ccccCCh--------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703 417 EFDKMSD--------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL 488 (720)
Q Consensus 417 Eidkm~~--------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl 488 (720)
|++.+.. +.+..|...++.. ++.+|+++|+.. ......+++++++||+
T Consensus 123 e~~~l~~~~~~~~~~~~~~~l~~~~~~~---------------~~~~i~~~~~~~--------~~~~~~~~~~l~~r~~- 178 (195)
T 1jbk_A 123 ELHTMVGAGKADGAMDAGNMLKPALARG---------------ELHCVGATTLDE--------YRQYIEKDAALERRFQ- 178 (195)
T ss_dssp TGGGGTT------CCCCHHHHHHHHHTT---------------SCCEEEEECHHH--------HHHHTTTCHHHHTTEE-
T ss_pred CHHHHhccCcccchHHHHHHHHHhhccC---------------CeEEEEeCCHHH--------HHHHHhcCHHHHHHhc-
Confidence 9999963 3366677666532 456778877432 1122357899999998
Q ss_pred EEEecCCChHHH
Q psy17703 489 IFLLLDPQSEQF 500 (720)
Q Consensus 489 i~~l~d~~~~~~ 500 (720)
.+.+..|+.++.
T Consensus 179 ~i~~~~p~~~~~ 190 (195)
T 1jbk_A 179 KVFVAEPSVEDT 190 (195)
T ss_dssp EEECCCCCHHHH
T ss_pred eeecCCCCHHHH
Confidence 567777765543
No 87
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.58 E-value=4.6e-08 Score=103.64 Aligned_cols=74 Identities=9% Similarity=0.069 Sum_probs=48.8
Q ss_pred ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee-E
Q psy17703 411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL-I 489 (720)
Q Consensus 411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl-i 489 (720)
.|++|||+|.+. .|+.|+..++-.. .-.+++.+|+.+|...-. ...|++++.|||.. +
T Consensus 134 ~ii~lDE~d~l~--~q~~L~~l~~~~~----------~~~s~~~vI~i~n~~d~~---------~~~L~~~v~SR~~~~~ 192 (318)
T 3te6_A 134 TLILIQNPENLL--SEKILQYFEKWIS----------SKNSKLSIICVGGHNVTI---------REQINIMPSLKAHFTE 192 (318)
T ss_dssp EEEEEECCSSSC--CTHHHHHHHHHHH----------CSSCCEEEEEECCSSCCC---------HHHHHTCHHHHTTEEE
T ss_pred eEEEEecHHHhh--cchHHHHHHhccc----------ccCCcEEEEEEecCcccc---------hhhcchhhhccCCceE
Confidence 589999999998 5677777765211 113568899999965310 01256678899974 6
Q ss_pred EEecCCChHHHHHHHH
Q psy17703 490 FLLLDPQSEQFDARLA 505 (720)
Q Consensus 490 ~~l~d~~~~~~d~~la 505 (720)
+.+.+...++....+.
T Consensus 193 i~F~pYt~~el~~Il~ 208 (318)
T 3te6_A 193 IKLNKVDKNELQQMII 208 (318)
T ss_dssp EECCCCCHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHH
Confidence 7777776666544443
No 88
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.54 E-value=3.8e-07 Score=97.59 Aligned_cols=70 Identities=23% Similarity=0.272 Sum_probs=52.2
Q ss_pred CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703 409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL 488 (720)
Q Consensus 409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl 488 (720)
...|++|||+|+|+.+.+++|+..||+- +.++.+|.++|... +++++++||+.
T Consensus 108 ~~kvviIdead~l~~~a~naLLk~lEep-------------~~~~~~Il~t~~~~-------------~l~~ti~SRc~- 160 (334)
T 1a5t_A 108 GAKVVWVTDAALLTDAAANALLKTLEEP-------------PAETWFFLATREPE-------------RLLATLRSRCR- 160 (334)
T ss_dssp SCEEEEESCGGGBCHHHHHHHHHHHTSC-------------CTTEEEEEEESCGG-------------GSCHHHHTTSE-
T ss_pred CcEEEEECchhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEeCChH-------------hCcHHHhhcce-
Confidence 4569999999999999999999999853 33455666665321 58999999996
Q ss_pred EEEecCCChHHHHHHHH
Q psy17703 489 IFLLLDPQSEQFDARLA 505 (720)
Q Consensus 489 i~~l~d~~~~~~d~~la 505 (720)
.+.+..++.++....+.
T Consensus 161 ~~~~~~~~~~~~~~~L~ 177 (334)
T 1a5t_A 161 LHYLAPPPEQYAVTWLS 177 (334)
T ss_dssp EEECCCCCHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHH
Confidence 67888777665544444
No 89
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.53 E-value=5.5e-07 Score=102.15 Aligned_cols=185 Identities=18% Similarity=0.181 Sum_probs=97.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecC----ccccceeeec--ceeeecCCceeecccc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKD----PETRQMVLQT--GALVLADSGVCCIDEF 418 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~----~~~~~~~~~~--G~l~lad~gI~~IDEi 418 (720)
.++||+||||||||++++++++.+...++ .................. .....+.... +........+++|||+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEi 157 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEV 157 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSG
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECC
Confidence 58999999999999999999998743221 111110000000000000 0000000000 0001134579999999
Q ss_pred ccCChHHH---HHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCC
Q psy17703 419 DKMSDTTR---SILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDP 495 (720)
Q Consensus 419 dkm~~~~~---~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~ 495 (720)
|.+....+ ..|...++.. +..+|.++|.... -.+ +++.+| ...+.+..+
T Consensus 158 d~l~~~~~~~l~~L~~~l~~~---------------~~~iIli~~~~~~-----------~~l-~~l~~r-~~~i~f~~~ 209 (516)
T 1sxj_A 158 DGMSGGDRGGVGQLAQFCRKT---------------STPLILICNERNL-----------PKM-RPFDRV-CLDIQFRRP 209 (516)
T ss_dssp GGCCTTSTTHHHHHHHHHHHC---------------SSCEEEEESCTTS-----------STT-GGGTTT-SEEEECCCC
T ss_pred CccchhhHHHHHHHHHHHHhc---------------CCCEEEEEcCCCC-----------ccc-hhhHhc-eEEEEeCCC
Confidence 99987665 6777777642 1224444443210 023 345544 457888877
Q ss_pred ChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcC
Q psy17703 496 QSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRY 575 (720)
Q Consensus 496 ~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~ 575 (720)
+.++....+.. .+.. ....+++++.+.|.+.. ....|++..++..+ +. .
T Consensus 210 ~~~~~~~~L~~------------i~~~-~~~~i~~~~l~~la~~s-------------~GdiR~~i~~L~~~---~~--~ 258 (516)
T 1sxj_A 210 DANSIKSRLMT------------IAIR-EKFKLDPNVIDRLIQTT-------------RGDIRQVINLLSTI---ST--T 258 (516)
T ss_dssp CHHHHHHHHHH------------HHHH-HTCCCCTTHHHHHHHHT-------------TTCHHHHHHHHTHH---HH--H
T ss_pred CHHHHHHHHHH------------HHHH-cCCCCCHHHHHHHHHHc-------------CCcHHHHHHHHHHH---Hh--c
Confidence 76654333321 1111 13457778877776431 12347666655432 22 3
Q ss_pred CCCCCHHhHHHHHH
Q psy17703 576 SETVEVQDVDEAWR 589 (720)
Q Consensus 576 ~~~V~~~Dv~~Ai~ 589 (720)
...++.+++.+++.
T Consensus 259 ~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 259 TKTINHENINEISK 272 (516)
T ss_dssp SSCCCTTHHHHHHH
T ss_pred CCCCchHHHHHHHH
Confidence 46788888888765
No 90
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.47 E-value=8.3e-09 Score=99.39 Aligned_cols=128 Identities=21% Similarity=0.260 Sum_probs=69.2
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccC-Cccccccccce--eecCcccccee--ee--cceeeec-CCceeec
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSG-KGSSAVGLTAY--ITKDPETRQMV--LQ--TGALVLA-DSGVCCI 415 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g-~~ss~~glta~--~~~~~~~~~~~--~~--~G~l~la-d~gI~~I 415 (720)
...++||+||||||||++++.+++.+.+...... .+......... .......+.+. +. -..+... .+.+++|
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i 121 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFI 121 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEE
Confidence 3568999999999999999999987633111000 00000000000 00000000000 00 0011111 2349999
Q ss_pred cccccCC---------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703 416 DEFDKMS---------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF 486 (720)
Q Consensus 416 DEidkm~---------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF 486 (720)
||++.+. .+..+.|...++. .++.+|+++|+... .....+++++++||
T Consensus 122 De~~~l~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~ii~~~~~~~~--------~~~~~~~~~l~~R~ 178 (187)
T 2p65_A 122 DEIHTVVGAGAVAEGALDAGNILKPMLAR---------------GELRCIGATTVSEY--------RQFIEKDKALERRF 178 (187)
T ss_dssp TTGGGGSSSSSSCTTSCCTHHHHHHHHHT---------------TCSCEEEEECHHHH--------HHHTTTCHHHHHHE
T ss_pred eCHHHhcccccccccchHHHHHHHHHHhc---------------CCeeEEEecCHHHH--------HHHHhccHHHHHhc
Confidence 9999987 4456667666654 24668888885431 11235789999999
Q ss_pred eeEEEecCC
Q psy17703 487 DLIFLLLDP 495 (720)
Q Consensus 487 dli~~l~d~ 495 (720)
+. +.+..|
T Consensus 179 ~~-i~i~~p 186 (187)
T 2p65_A 179 QQ-ILVEQP 186 (187)
T ss_dssp EE-EECCSC
T ss_pred Cc-ccCCCC
Confidence 94 555544
No 91
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.45 E-value=7.2e-07 Score=96.13 Aligned_cols=205 Identities=17% Similarity=0.137 Sum_probs=114.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCC-------CccccCCcccc-ccccceeec---C--cccc----ceeeec-ceee
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPR-------SQYTSGKGSSA-VGLTAYITK---D--PETR----QMVLQT-GALV 406 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr-------~~~~~g~~ss~-~glta~~~~---~--~~~~----~~~~~~-G~l~ 406 (720)
..+++|+||||+|||+|++.+++.+.+ .++..+..... ..+...+.. . +..+ +..-.. ..+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 124 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR 124 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh
Confidence 458999999999999999999986621 11111100000 000000000 0 0000 000000 0000
Q ss_pred ec-CCceeeccccccCC----hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChh
Q psy17703 407 LA-DSGVCCIDEFDKMS----DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHT 481 (720)
Q Consensus 407 la-d~gI~~IDEidkm~----~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~a 481 (720)
.. ...+++|||++.+. .+....|.+.++.. -+.++.+|+++|... + ...+.+.
T Consensus 125 ~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~------------~~~~~~~I~~~~~~~--------~--~~~~~~~ 182 (386)
T 2qby_A 125 DYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV------------NKSKISFIGITNDVK--------F--VDLLDPR 182 (386)
T ss_dssp TCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC------------CC--EEEEEEESCGG--------G--GGGCTTH
T ss_pred ccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc------------CCCeEEEEEEECCCC--------h--HhhhCHH
Confidence 01 14589999999875 34455555555432 123567788887432 0 0136788
Q ss_pred hhcccee-EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHH
Q psy17703 482 LLSRFDL-IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQL 560 (720)
Q Consensus 482 LlsRFdl-i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~l 560 (720)
+.+||.. .+.+.++..++....+. .++..+ .....+++++.+.+..+... ...++|.+
T Consensus 183 ~~~r~~~~~i~l~~l~~~~~~~il~---------~~~~~~--~~~~~~~~~~~~~l~~~~~~----------~~G~~r~~ 241 (386)
T 2qby_A 183 VKSSLSEEEIIFPPYNAEELEDILT---------KRAQMA--FKPGVLPDNVIKLCAALAAR----------EHGDARRA 241 (386)
T ss_dssp HHHTTTTEEEEECCCCHHHHHHHHH---------HHHHHH--BCSSCSCHHHHHHHHHHHHH----------TTCCHHHH
T ss_pred HhccCCCeeEEeCCCCHHHHHHHHH---------HHHHhh--ccCCCCCHHHHHHHHHHHHH----------hcCCHHHH
Confidence 8999963 67777776655433333 222111 11346788888777654321 11357988
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHH
Q psy17703 561 ESLIRLSEAHAKMRYSETVEVQDVDEAWRLHR 592 (720)
Q Consensus 561 e~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~ 592 (720)
..+++.+...|..+....|+.+|+..|+.-..
T Consensus 242 ~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 242 LDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 88998888888877888999999999987543
No 92
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.44 E-value=7.7e-09 Score=123.39 Aligned_cols=131 Identities=19% Similarity=0.234 Sum_probs=75.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccc--cccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSS--AVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM 421 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss--~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm 421 (720)
.-++||+||||||||+|++++++.+....+ .++.... .+|.... ..+.....+. ....+|+||||+|.+
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~-----~i~~~f~~a~---~~~p~vl~iDEid~l 582 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEA-----NVREIFDKAR---QAAPCVLFFDELDSI 582 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSH-----HHHHHHHHHH---HHCSBCCCCSSHHHH
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHH-----HHHHHHHHHH---hcCCeEEEEEChhhh
Confidence 357999999999999999999998753322 1111100 0000000 0000000000 112469999999986
Q ss_pred Ch--------------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--c
Q psy17703 422 SD--------------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--R 485 (720)
Q Consensus 422 ~~--------------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--R 485 (720)
.. ..++.|+..|+.. .-..++.||||+|+.. .|++++++ |
T Consensus 583 ~~~r~~~~~~~~~~~~~v~~~LL~~ld~~-----------~~~~~v~vI~tTN~~~-------------~ld~allrpgR 638 (806)
T 1ypw_A 583 AKARGGNIGDGGGAADRVINQILTEMDGM-----------STKKNVFIIGATNRPD-------------IIDPAILRPGR 638 (806)
T ss_dssp CCTTTTCCSHHHHHHHHHHHHHHTTCC-----------------CCBCCCCCBSCG-------------GGSCTTSSGGG
T ss_pred hhhccCCCCCcchhHHHHHHHHHHHHhcc-----------cccCCeEEEEecCCcc-------------cCCHHHhCccc
Confidence 32 1223444444321 1124688999999764 48899999 9
Q ss_pred ceeEEEecCCChHHHHHHHHhh
Q psy17703 486 FDLIFLLLDPQSEQFDARLARH 507 (720)
Q Consensus 486 Fdli~~l~d~~~~~~d~~la~~ 507 (720)
|+.++.+..|..++....+..+
T Consensus 639 f~~~i~~~~p~~~~r~~Il~~~ 660 (806)
T 1ypw_A 639 LDQLIYIPLPDEKSRVAILKAN 660 (806)
T ss_dssp TTSCCCCCCCCCSHHHHHTTTT
T ss_pred cCceeecCCCCHHHHHHHHHHH
Confidence 9988888877766655554443
No 93
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.44 E-value=3e-07 Score=97.18 Aligned_cols=129 Identities=14% Similarity=0.171 Sum_probs=75.3
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccce--eecCccccceeeeccee-eecCCceeeccccccC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAY--ITKDPETRQMVLQTGAL-VLADSGVCCIDEFDKM 421 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~--~~~~~~~~~~~~~~G~l-~lad~gI~~IDEidkm 421 (720)
..+.||+||||+|||++++++++.... +.. .......+.+. ...-...++..-..... ..+...|++|||++.|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~--~~~-~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~l 94 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEK--FPP-KASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERM 94 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHT--SCC-CTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCch--hhc-cCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHh
Confidence 358999999999999999999874210 000 00000000000 00000000100000000 1234579999999999
Q ss_pred ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHH
Q psy17703 422 SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFD 501 (720)
Q Consensus 422 ~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d 501 (720)
+.+.+++|+..||+- |..+.+|.++|.. .++.+++.|| ++.+..++.++..
T Consensus 95 t~~a~naLLk~LEep-------------~~~t~fIl~t~~~-------------~kl~~tI~SR---~~~f~~l~~~~i~ 145 (305)
T 2gno_A 95 TQQAANAFLKALEEP-------------PEYAVIVLNTRRW-------------HYLLPTIKSR---VFRVVVNVPKEFR 145 (305)
T ss_dssp CHHHHHHTHHHHHSC-------------CTTEEEEEEESCG-------------GGSCHHHHTT---SEEEECCCCHHHH
T ss_pred CHHHHHHHHHHHhCC-------------CCCeEEEEEECCh-------------HhChHHHHce---eEeCCCCCHHHHH
Confidence 999999999999963 2344445444421 1588999999 7788887777655
Q ss_pred HHHH
Q psy17703 502 ARLA 505 (720)
Q Consensus 502 ~~la 505 (720)
..+.
T Consensus 146 ~~L~ 149 (305)
T 2gno_A 146 DLVK 149 (305)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 94
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.31 E-value=5.6e-06 Score=109.21 Aligned_cols=187 Identities=16% Similarity=0.238 Sum_probs=118.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccc--cCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT--SGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~--~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~ 422 (720)
.....+.||+|||||.+++.+++.+.+..++ +..+.+...+ +. +-.|. ...|..+|+|||++++
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~----------g~--i~~G~--~~~GaW~cfDEfNrl~ 669 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAM----------SR--IFVGL--CQCGAWGCFDEFNRLE 669 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHH----------HH--HHHHH--HHHTCEEEEETTTSSC
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHH----------HH--HHhhH--hhcCcEEEehhhhcCC
Confidence 4567899999999999999999999876543 2222221111 00 01222 1246788999999999
Q ss_pred hHHHHHHHHHHH---------hceEeeecc-CeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEe
Q psy17703 423 DTTRSILHEVME---------QQTLSIAKA-GIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLL 492 (720)
Q Consensus 423 ~~~~~~L~e~mE---------~~~vsi~k~-g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l 492 (720)
.+..+++.+.+. ..++.+ . |....++..+.+++|+||.+. + ...||++|.+||- -+.+
T Consensus 670 ~~vLSvv~~qi~~I~~a~~~~~~~~~~--~~G~~i~l~~~~~vfiTmNpgY~---g------r~eLP~nLk~lFr-~v~m 737 (3245)
T 3vkg_A 670 ERILSAVSQQIQTIQVALKENSKEVEL--LGGKNISLHQDMGIFVTMNPGYA---G------RSNLPDNLKKLFR-SMAM 737 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEECC--C---CEECCTTCEEEECBCCCGG---G------CCCSCHHHHTTEE-EEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEe--cCCCEEeecCCeEEEEEeCCCcc---C------cccChHHHHhhcE-EEEE
Confidence 999888777665 344444 4 777889999999999999432 1 2369999999995 4556
Q ss_pred cCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703 493 LDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK 572 (720)
Q Consensus 493 ~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~ 572 (720)
..|+.+..-+. +.++. --.-.......++..|.-.+..=+...+.-.-.|.+.++++.|-+.-|
T Consensus 738 ~~Pd~~~i~ei-------------~L~s~---Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~lkr 801 (3245)
T 3vkg_A 738 IKPDREMIAQV-------------MLYSQ---GFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKR 801 (3245)
T ss_dssp CSCCHHHHHHH-------------HHHTT---TCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHHHH
T ss_pred eCCCHHHHHHH-------------HHHHc---ccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 55544322221 11111 112234555667777765555433344544446999999998876644
Q ss_pred H
Q psy17703 573 M 573 (720)
Q Consensus 573 l 573 (720)
-
T Consensus 802 ~ 802 (3245)
T 3vkg_A 802 K 802 (3245)
T ss_dssp S
T ss_pred h
Confidence 3
No 95
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.14 E-value=1.6e-06 Score=103.36 Aligned_cols=130 Identities=22% Similarity=0.213 Sum_probs=79.6
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecCccccceeeecce-e---eecCCceeecccc
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKDPETRQMVLQTGA-L---VLADSGVCCIDEF 418 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~~~~~~~~~~~G~-l---~lad~gI~~IDEi 418 (720)
..-++||+||||||||+|++++++.++...+ ..+. ... ....++....-+. + .....+++||||+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~--~l~--------~~~~g~~~~~l~~vf~~a~~~~p~il~iDEi 306 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGP--EIM--------SKLAGESESNLRKAFEEAEKNAPAIIFIDEL 306 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHH--HHS--------SSSTTHHHHHHHHHHHHHHHHCSEEEEEESG
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEch--Hhh--------hhhhhhHHHHHHHHHHHHHhcCCcEEEeccH
Confidence 3458999999999999999999998764321 1110 000 0000100000000 0 0123579999999
Q ss_pred ccCCh-----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--c
Q psy17703 419 DKMSD-----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--R 485 (720)
Q Consensus 419 dkm~~-----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--R 485 (720)
+.+.+ ..+..|++.|+... -..++.+++|+|+.. .+++++.+ |
T Consensus 307 d~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-----------~~~~v~vI~atn~~~-------------~ld~al~r~gR 362 (806)
T 1ypw_A 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATNRPN-------------SIDPALRRFGR 362 (806)
T ss_dssp GGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-----------TTSCCEEEEECSCTT-------------TSCTTTTSTTS
T ss_pred HHhhhccccccchHHHHHHHHHHHHhhhhc-----------ccccEEEecccCCch-------------hcCHHHhcccc
Confidence 87753 23456777776322 124678999999764 46778877 9
Q ss_pred ceeEEEecCCChHHHHHHHHhh
Q psy17703 486 FDLIFLLLDPQSEQFDARLARH 507 (720)
Q Consensus 486 Fdli~~l~d~~~~~~d~~la~~ 507 (720)
|+..+.+..|..++....+..+
T Consensus 363 f~~~i~i~~p~~~~r~~il~~~ 384 (806)
T 1ypw_A 363 FDREVDIGIPDATGRLEILQIH 384 (806)
T ss_dssp SCEEECCCCCCHHHHHHHHHHT
T ss_pred cccccccCCCCHHHHHHHHHHH
Confidence 9988888877776665555433
No 96
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.06 E-value=3.2e-06 Score=79.58 Aligned_cols=105 Identities=18% Similarity=0.250 Sum_probs=63.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT 424 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~ 424 (720)
.-.++|+|++|+|||+|+++++..++. .|. ....+.+. ..... + .+.+..+++|||++.+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~----~g~--~~~~~~~~----~~~~~------~-~~~~~~lLilDE~~~~~~~ 98 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE----AGK--NAAYIDAA----SMPLT------D-AAFEAEYLAVDQVEKLGNE 98 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT----TTC--CEEEEETT----TSCCC------G-GGGGCSEEEEESTTCCCSH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh----cCC--cEEEEcHH----HhhHH------H-HHhCCCEEEEeCccccChH
Confidence 457999999999999999999987642 111 11111110 00000 1 1234679999999999887
Q ss_pred HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703 425 TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD 487 (720)
Q Consensus 425 ~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd 487 (720)
.+..|.++++... ..| ...+|.|+|.....|. .+ +.|.|||.
T Consensus 99 ~~~~l~~li~~~~----~~g-------~~~iiits~~~p~~l~---------~~-~~L~SRl~ 140 (149)
T 2kjq_A 99 EQALLFSIFNRFR----NSG-------KGFLLLGSEYTPQQLV---------IR-EDLRTRMA 140 (149)
T ss_dssp HHHHHHHHHHHHH----HHT-------CCEEEEEESSCTTTSS---------CC-HHHHHHGG
T ss_pred HHHHHHHHHHHHH----HcC-------CcEEEEECCCCHHHcc---------cc-HHHHHHHh
Confidence 7888888876431 011 1224556664433322 13 88999986
No 97
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.96 E-value=1.8e-05 Score=77.95 Aligned_cols=122 Identities=20% Similarity=0.246 Sum_probs=67.5
Q ss_pred cCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703 341 ETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK 420 (720)
Q Consensus 341 E~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk 420 (720)
+.|..-++|++||||||||+++.++++.+...+..-.. . .. .+.+. .+.+..+++|||++.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fan-------------s-~s-~f~l~----~l~~~kIiiLDEad~ 114 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVN-------------S-TS-HFWLE----PLTDTKVAMLDDATT 114 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCC-------------S-SS-CGGGG----GGTTCSSEEEEEECH
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEe-------------c-cc-hhhhc----ccCCCCEEEEECCCc
Confidence 45555679999999999999999999876321111000 0 00 01111 123456899999985
Q ss_pred CChHH-HHHHHHHHHhceEeeeccCeE-EeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEec
Q psy17703 421 MSDTT-RSILHEVMEQQTLSIAKAGII-CQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLL 493 (720)
Q Consensus 421 m~~~~-~~~L~e~mE~~~vsi~k~g~~-~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~ 493 (720)
..... ...+..+|+...+++.+.... ...+ ..-+|-|+|-.... . .--..|.||+- .|.+.
T Consensus 115 ~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~-~~PlIITtN~~~~~---------~-~~~~~L~SRi~-~f~F~ 177 (212)
T 1tue_A 115 TCWTYFDTYMRNALDGNPISIDRKHKPLIQLK-CPPILLTTNIHPAK---------D-NRWPYLESRIT-VFEFP 177 (212)
T ss_dssp HHHHHHHHHCHHHHHTCCEEEC----CCEEEC-CCCEEEEESSCTTS---------S-SSCHHHHTSCE-EEECC
T ss_pred hhHHHHHHHHHHHhCCCcccHHHhhcCccccC-CCCEEEecCCCccc---------c-cchhhhhhhEE-EEEcC
Confidence 32222 235667777766666322111 1122 23567778843321 1 12278999996 55554
No 98
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.72 E-value=3.9e-05 Score=83.54 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=81.8
Q ss_pred ceeeccccccCCh------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCC---hh
Q psy17703 411 GVCCIDEFDKMSD------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLP---HT 481 (720)
Q Consensus 411 gI~~IDEidkm~~------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~---~a 481 (720)
-+++|||++.+.. +....|...+++... .+ ...++.+|+++|... +.+ .+. +.
T Consensus 140 ~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~----~~----~~~~v~lI~~~~~~~--------~~~--~l~~~~~~ 201 (412)
T 1w5s_A 140 LLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS----RD----GVNRIGFLLVASDVR--------ALS--YMREKIPQ 201 (412)
T ss_dssp EEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC----TT----SCCBEEEEEEEEETH--------HHH--HHHHHCHH
T ss_pred EEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc----CC----CCceEEEEEEecccc--------HHH--HHhhhcch
Confidence 3899999998753 444445555543210 00 024677887776221 000 123 56
Q ss_pred hhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHH
Q psy17703 482 LLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLE 561 (720)
Q Consensus 482 LlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le 561 (720)
+.+||...+.+.+.+.++....+. .++..+. ....+++++.+.+.+..-.. .+....||.+.
T Consensus 202 ~~~~~~~~i~l~~l~~~e~~~ll~---------~~~~~~~--~~~~~~~~~~~~i~~~~~~~-------~~~~G~p~~~~ 263 (412)
T 1w5s_A 202 VESQIGFKLHLPAYKSRELYTILE---------QRAELGL--RDTVWEPRHLELISDVYGED-------KGGDGSARRAI 263 (412)
T ss_dssp HHTTCSEEEECCCCCHHHHHHHHH---------HHHHHHB--CTTSCCHHHHHHHHHHHCGG-------GTSCCCHHHHH
T ss_pred hhhhcCCeeeeCCCCHHHHHHHHH---------HHHHhcC--CCCCCChHHHHHHHHHHHHh-------ccCCCcHHHHH
Confidence 677877666676666554433322 2222111 12356777777666443100 00114579999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHhHHHHHH
Q psy17703 562 SLIRLSEAHAKMRYSETVEVQDVDEAWR 589 (720)
Q Consensus 562 ~lirla~A~A~l~~~~~V~~~Dv~~Ai~ 589 (720)
.+++.+...|..+....++.+++..|+.
T Consensus 264 ~l~~~a~~~a~~~~~~~i~~~~v~~~~~ 291 (412)
T 1w5s_A 264 VALKMACEMAEAMGRDSLSEDLVRKAVS 291 (412)
T ss_dssp HHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 9998887788777888899999988765
No 99
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.57 E-value=1.2e-05 Score=77.42 Aligned_cols=104 Identities=14% Similarity=0.121 Sum_probs=57.3
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccc---cceeeecceeeecCCceeeccccc--
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPET---RQMVLQTGALVLADSGVCCIDEFD-- 419 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~---~~~~~~~G~l~lad~gI~~IDEid-- 419 (720)
.-+++|+||||+|||+|+++++..+.. ..|.. ...++..-...... .......-.-.+.+..+++|||++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~---~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYE---KKGIR--GYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHH---HSCCC--CCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH---HcCCe--EEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 468999999999999999999987631 01110 00011000000000 000000000012356899999998
Q ss_pred cCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCC
Q psy17703 420 KMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQ 465 (720)
Q Consensus 420 km~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~ 465 (720)
.+++..+..|+++++... ..+..+|.++|.....
T Consensus 113 ~~~~~~~~~l~~ll~~~~------------~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 113 RLSDWQRELISYIITYRY------------NNLKSTIITTNYSLQR 146 (180)
T ss_dssp CCCHHHHHHHHHHHHHHH------------HTTCEEEEECCCCSCC
T ss_pred cCCHHHHHHHHHHHHHHH------------HcCCCEEEEcCCChhH
Confidence 567777788888876431 1235677788865533
No 100
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.55 E-value=0.00021 Score=73.33 Aligned_cols=125 Identities=14% Similarity=0.119 Sum_probs=66.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT 424 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~ 424 (720)
.-+++|+||||||||.++.++++.++..-..+.. + ..+.+.+ +.+.-|++.||. .|..+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l~G~vn~~-------------~---~~f~l~~----~~~k~i~l~Ee~-~~~~d 162 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWT-------------N---ENFPFND----CVDKMVIWWEEG-KMTAK 162 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSCEEECCTT-------------C---SSCTTGG----GSSCSEEEECSC-CEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcccceeecc-------------c---ccccccc----ccccEEEEeccc-cchhH
Confidence 4579999999999999999999865431000000 0 0111111 123445555554 45556
Q ss_pred HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEec
Q psy17703 425 TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLL 493 (720)
Q Consensus 425 ~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~ 493 (720)
....+..+|+-..+.+......-..-.++-+|-++|-....+...-... ....++|.||.- +|.+.
T Consensus 163 ~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s--~~~~~~L~sR~~-~f~F~ 228 (267)
T 1u0j_A 163 VVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTT--FEHQQPLQDRMF-KFELT 228 (267)
T ss_dssp THHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEE--CTTHHHHHTTEE-EEECC
T ss_pred HHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccc--hhhhHHHhhhEE-EEECC
Confidence 6678888898777766332221112235667778885332210000000 124477999985 56665
No 101
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.18 E-value=1.7e-05 Score=83.82 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=23.4
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..+++|+||||||||.|+++++..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999998654
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.09 E-value=0.00042 Score=68.25 Aligned_cols=61 Identities=8% Similarity=0.096 Sum_probs=37.9
Q ss_pred CceeeccccccC--Ch-HHH--HHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc
Q psy17703 410 SGVCCIDEFDKM--SD-TTR--SILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS 484 (720)
Q Consensus 410 ~gI~~IDEidkm--~~-~~~--~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls 484 (720)
+.+++|||++.+ +. +.. ..++..++... .....+|.+++|.. .|+.++.+
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r------------~~~~~iil~tq~~~-------------~l~~~lr~ 142 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR------------HQGIDIFVLTQGPK-------------LLDQNLRT 142 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT------------TTTCEEEEEESCGG-------------GBCHHHHT
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcC------------cCCeEEEEECCCHH-------------HHhHHHHH
Confidence 789999999988 22 111 12334443211 12345666666532 58889999
Q ss_pred cceeEEEecCC
Q psy17703 485 RFDLIFLLLDP 495 (720)
Q Consensus 485 RFdli~~l~d~ 495 (720)
|++..+.+..+
T Consensus 143 ri~~~~~l~~~ 153 (199)
T 2r2a_A 143 LVRKHYHIASN 153 (199)
T ss_dssp TEEEEEEEEEC
T ss_pred HhheEEEEcCc
Confidence 99988888753
No 103
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.84 E-value=0.0013 Score=63.81 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=20.8
Q ss_pred CceeeccccccCChHHHHHHHHHHHh
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVMEQ 435 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE~ 435 (720)
..+++|||+..++++....|...+++
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHT
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHC
Confidence 45899999999987777777777665
No 104
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.60 E-value=0.0035 Score=66.63 Aligned_cols=187 Identities=12% Similarity=0.108 Sum_probs=100.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeeccee-eecCCceeecccccc-CC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGAL-VLADSGVCCIDEFDK-MS 422 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l-~lad~gI~~IDEidk-m~ 422 (720)
....||+||+|+||++.++.+++.+...-+ .......+.+ +....+..-+.... ..++.-+++|||.+. |+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~----~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~ 90 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGF---EEHHTFSIDP----NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN 90 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTC---CEEEEEECCT----TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCC---CeeEEEEecC----CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC
Confidence 346888999999999999998875421000 0000000000 00001110001011 124567999999999 99
Q ss_pred hHHHHHHHHHHHhceEeeeccCeEEeecCceEE-EecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHH
Q psy17703 423 DTTRSILHEVMEQQTLSIAKAGIICQLNARTSI-LAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFD 501 (720)
Q Consensus 423 ~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~i-iaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d 501 (720)
.+.+++|+..+|+- |..+.+ +++.++... .....+.+++.+|+- ++.+..++..+.
T Consensus 91 ~~~~~aLl~~le~p-------------~~~~~~il~~~~~~~~--------~~~~k~~~~i~sr~~-~~~~~~l~~~~l- 147 (343)
T 1jr3_D 91 AAINEQLLTLTGLL-------------HDDLLLIVRGNKLSKA--------QENAAWFTALANRSV-QVTCQTPEQAQL- 147 (343)
T ss_dssp TTHHHHHHHHHTTC-------------BTTEEEEEEESCCCTT--------TTTSHHHHHHTTTCE-EEEECCCCTTHH-
T ss_pred hHHHHHHHHHHhcC-------------CCCeEEEEEcCCCChh--------hHhhHHHHHHHhCce-EEEeeCCCHHHH-
Confidence 99999999999852 223333 344332210 011247789999995 677766655433
Q ss_pred HHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCH
Q psy17703 502 ARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEV 581 (720)
Q Consensus 502 ~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~ 581 (720)
.+++...-+...-.+++++.+.|.+.. ..+.|.+...+.- .+-......+|.
T Consensus 148 ------------~~~l~~~~~~~g~~i~~~a~~~l~~~~-------------~gdl~~~~~elek---l~l~~~~~~It~ 199 (343)
T 1jr3_D 148 ------------PRWVAARAKQLNLELDDAANQVLCYCY-------------EGNLLALAQALER---LSLLWPDGKLTL 199 (343)
T ss_dssp ------------HHHHHHHHHHTTCEECHHHHHHHHHSS-------------TTCHHHHHHHHHH---HHHHCTTCEECH
T ss_pred ------------HHHHHHHHHHcCCCCCHHHHHHHHHHh-------------chHHHHHHHHHHH---HHHhcCCCCCCH
Confidence 233322222235578889888887431 1123544443321 122223457888
Q ss_pred HhHHHHHH
Q psy17703 582 QDVDEAWR 589 (720)
Q Consensus 582 ~Dv~~Ai~ 589 (720)
+|+.+.+.
T Consensus 200 e~V~~~~~ 207 (343)
T 1jr3_D 200 PRVEQAVN 207 (343)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88877654
No 105
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.56 E-value=0.016 Score=57.79 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=22.2
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
|.++|++.|+||+|||+++-.++..+
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 77899999999999999977766543
No 106
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.41 E-value=0.0062 Score=59.23 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=23.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.+++|+||||||||+|++++++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999998663
No 107
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.85 E-value=0.022 Score=63.17 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=21.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
.++++.|+||||||+++.+++..+
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 399999999999999999988765
No 108
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.67 E-value=0.012 Score=67.29 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=31.4
Q ss_pred ccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 330 HFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 330 ~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
.+.+.|.--+......-.+++.|+||||||+++..+...+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456777666555556789999999999999999988754
No 109
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.59 E-value=0.029 Score=59.24 Aligned_cols=61 Identities=21% Similarity=0.346 Sum_probs=55.1
Q ss_pred ccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCCCC
Q psy17703 659 LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWN 719 (720)
Q Consensus 659 ~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~~~ 719 (720)
.+..++.++||++.++.+....+++.|+++.+.+...|....++.+..++|++||..++++
T Consensus 142 ~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~ 202 (350)
T 1g8p_A 142 RANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLR 202 (350)
T ss_dssp HHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCC
T ss_pred ecCCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCC
Confidence 4456789999999999999999999999999999999999999999999999999776553
No 110
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.26 E-value=0.024 Score=53.63 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=23.3
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
..|+|.|+||+|||++++.+++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 35899999999999999999998764
No 111
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.11 E-value=0.026 Score=53.12 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..|.|+|+||+|||++++.+++.++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998765
No 112
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.57 E-value=0.034 Score=52.95 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=22.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.+|+|+|+||+|||++++.+++.+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998764
No 113
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.52 E-value=0.033 Score=52.06 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=21.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.|+|.|+||+|||++++.+++.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 114
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.47 E-value=0.034 Score=52.62 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+|+|.|+||+|||++++.+++.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998764
No 115
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.39 E-value=0.037 Score=52.20 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=19.7
Q ss_pred cEEEEcCCCCHHHHHHHHHHh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~ 367 (720)
.|+|.|+||+|||++++.+++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999987
No 116
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.35 E-value=0.035 Score=53.30 Aligned_cols=24 Identities=25% Similarity=0.625 Sum_probs=22.0
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
++.|+||+|+|||+|++.++..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 688999999999999999998774
No 117
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.15 E-value=0.044 Score=51.41 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=22.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+|+|.|.||+|||++++.+++.+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3899999999999999999998664
No 118
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.13 E-value=0.043 Score=53.26 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-.|+|+|+||+|||++++.+++.+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998764
No 119
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.92 E-value=0.047 Score=51.82 Aligned_cols=26 Identities=35% Similarity=0.363 Sum_probs=23.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..+|+|+|+||+|||++++.+++.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 120
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.88 E-value=0.058 Score=62.03 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=27.3
Q ss_pred chhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 332 TDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 332 ~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
.++|..-+...-.+-.+++.|+||||||+++.++...+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 35666544333356689999999999999988776543
No 121
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.84 E-value=0.059 Score=52.76 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.7
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+|+|.|+||+|||++++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988664
No 122
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.83 E-value=0.047 Score=52.22 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.3
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
.-.+.|+|+||+|||++++.+++.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346889999999999999999876
No 123
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.71 E-value=0.065 Score=51.26 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=22.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
..+|+|+|+||+|||++++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999987
No 124
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.45 E-value=0.053 Score=51.63 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.7
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.|+|.|+||+|||++++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999998764
No 125
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.43 E-value=0.066 Score=51.72 Aligned_cols=24 Identities=13% Similarity=0.306 Sum_probs=21.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+||+|+|||++++.++...|
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 477999999999999999999876
No 126
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.34 E-value=0.065 Score=50.95 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.7
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.|+|.|+||+|||++++.+++.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998654
No 127
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.32 E-value=0.058 Score=51.32 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=22.3
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..|+|.|+||+|||++++.+++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999998654
No 128
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.30 E-value=0.059 Score=50.17 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=19.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.|+|.|+||+|||++++.+ +...
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC
Confidence 5889999999999999999 5443
No 129
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.30 E-value=0.072 Score=50.82 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=22.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
--+.|+||+|+|||+|++.+++..+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3588999999999999999998876
No 130
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.27 E-value=0.068 Score=52.27 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+|+|.|+||+|||++++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987654
No 131
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.20 E-value=0.06 Score=51.39 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...|+|.|+||+|||++++.+++.+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999998653
No 132
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.20 E-value=0.073 Score=51.80 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=23.3
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...++|+|+||+|||++++.+++.++
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45789999999999999999998875
No 133
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.09 E-value=0.07 Score=50.01 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=21.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.|+|.|+||+|||++++.+++.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998664
No 134
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.06 E-value=0.065 Score=51.92 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.3
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..|+|.|+||+|||++++.+++.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998763
No 135
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.03 E-value=0.067 Score=50.42 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=21.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
-.++|+|+||+|||++++.+++.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999865
No 136
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.03 E-value=0.065 Score=51.96 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=22.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
.-.+.|+|+||+|||++++.+++.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468899999999999999999876
No 137
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.00 E-value=0.062 Score=51.42 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=19.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~ 368 (720)
-+.|+|+||+|||++++.+++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 3689999999999999999873
No 138
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.00 E-value=0.07 Score=50.73 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..|+|+|+||+|||++++.+++.+.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987653
No 139
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.98 E-value=0.18 Score=52.77 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=47.5
Q ss_pred CcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCC
Q psy17703 663 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 715 (720)
Q Consensus 663 ~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~ 715 (720)
++.++||++.++.+...++++.|++..+.+ .|....++.++.|+|+.||..
T Consensus 111 ~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~--~g~~~~~~~~~~viat~np~~ 161 (331)
T 2r44_A 111 NFILADEVNRSPAKVQSALLECMQEKQVTI--GDTTYPLDNPFLVLATQNPVE 161 (331)
T ss_dssp SEEEEETGGGSCHHHHHHHHHHHHHSEEEE--TTEEEECCSSCEEEEEECTTC
T ss_pred cEEEEEccccCCHHHHHHHHHHHhcCceee--CCEEEECCCCEEEEEecCCCc
Confidence 688999999999999999999999999888 688899999999999999976
No 140
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.94 E-value=0.07 Score=54.13 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=21.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
.++|+|+||+|||++++.+++.++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC
Confidence 4789999999999999999987653
No 141
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.92 E-value=0.067 Score=50.64 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=19.1
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
..|+|.|.||+|||++++.+++.+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 46899999999999999999987754
No 142
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=91.90 E-value=0.079 Score=45.68 Aligned_cols=28 Identities=21% Similarity=0.662 Sum_probs=23.0
Q ss_pred heeecccCCceeeeeeccCcccCCccCCCCCCC
Q psy17703 287 AFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTN 319 (720)
Q Consensus 287 ~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~ 319 (720)
.-|+|.+||+.+ ...+..|..||.|++.
T Consensus 66 ~p~~C~~CG~~F-----~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 66 KPAQCRKCGFVF-----KAEINIPSRCPKCKSE 93 (105)
T ss_dssp CCCBBTTTCCBC-----CCCSSCCSSCSSSCCC
T ss_pred ECcChhhCcCee-----cccCCCCCCCcCCCCC
Confidence 458999999996 3456789999999974
No 143
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.86 E-value=0.17 Score=50.42 Aligned_cols=23 Identities=13% Similarity=-0.076 Sum_probs=17.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
.=++++|+||+|||+++..++..
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 34778999999999977665553
No 144
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.85 E-value=0.075 Score=50.64 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=22.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..|+|.|+||+|||++++.+++.+.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988654
No 145
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.72 E-value=0.085 Score=49.20 Aligned_cols=24 Identities=25% Similarity=0.144 Sum_probs=21.7
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.|+|.|.||+|||++++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998654
No 146
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.71 E-value=0.083 Score=51.09 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=22.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...|+|+|+||+|||++++.+++.+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998654
No 147
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.70 E-value=0.088 Score=51.76 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=23.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...|+|+|+||+|||++++.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998664
No 148
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.68 E-value=0.079 Score=51.31 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=22.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..|+|.|+||+|||++++.+++.++
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 149
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.68 E-value=0.076 Score=51.47 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.-.+.|+|++|+|||++++.+++.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999998763
No 150
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.53 E-value=0.089 Score=50.78 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.4
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
...+.|+|++|+|||++++.+++..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468899999999999999999877
No 151
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.47 E-value=0.086 Score=50.69 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.|.|.|+||+|||++++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 578999999999999999998765
No 152
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.47 E-value=0.084 Score=50.64 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=22.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..|.|.|+||+|||++++.+++.+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998764
No 153
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.46 E-value=0.085 Score=50.46 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=23.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...|.|.|+||+|||++++.+++.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998664
No 154
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.36 E-value=0.089 Score=54.44 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=23.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...++|.|+||+|||++++.+++.++
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998765
No 155
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.36 E-value=0.095 Score=51.27 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
.-+.|+||+|+|||++++.+++..+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 45889999999999999999988764
No 156
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.32 E-value=0.1 Score=51.69 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=22.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..|+|.|+||+|||++++.+++.+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999998664
No 157
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.31 E-value=0.09 Score=51.77 Aligned_cols=26 Identities=12% Similarity=0.341 Sum_probs=23.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...|+|.|+||+|||++++.+++.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998765
No 158
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.30 E-value=0.11 Score=50.44 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.6
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...-|.|+|+||+|||++++.+++.++
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456789999999999999999998764
No 159
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.29 E-value=0.096 Score=51.49 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.|+|.||||+||++.++.+++...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 588999999999999999998653
No 160
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.29 E-value=0.091 Score=49.93 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=22.1
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..|+|.|+||+|||++++.+++.+.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998654
No 161
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.94 E-value=0.11 Score=50.93 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=21.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+|+|.|+||+|||++++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998654
No 162
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.92 E-value=0.086 Score=53.31 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.4
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...++|.|+||+|||++++.+++.++
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999998775
No 163
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.86 E-value=0.087 Score=52.86 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=21.3
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
-.+.|+|+||+|||++++.+++.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999544
No 164
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.86 E-value=0.1 Score=51.97 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=23.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..+|+|.|+||+|||++++.+++.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998764
No 165
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.65 E-value=0.13 Score=49.59 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=22.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..|+|.|+||+|||++++.+++.+.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998764
No 166
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.61 E-value=0.11 Score=51.15 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=22.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..|+|.|+||+|||++++.+++.+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998664
No 167
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.50 E-value=0.16 Score=49.01 Aligned_cols=25 Identities=36% Similarity=0.600 Sum_probs=22.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
+|.|+||+|+|||+|++.+.+..|.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC
Confidence 6899999999999999999887764
No 168
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.44 E-value=0.13 Score=49.19 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=21.7
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+||+|+|||++++.++...+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 367899999999999999999876
No 169
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.43 E-value=0.12 Score=50.86 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=22.2
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..|.|+|+||+|||++++.+++.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998653
No 170
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.39 E-value=0.13 Score=51.07 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-|+|.||||+||++.++.+++...
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478899999999999999998653
No 171
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.35 E-value=0.13 Score=54.10 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
..++|+||||+|||+|+..++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 35799999999999999999864
No 172
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.34 E-value=0.13 Score=50.92 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.|+|.|+||+|||++++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998654
No 173
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.23 E-value=0.13 Score=49.09 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=23.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...|+|+|.||+|||++++.+++.+.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999998764
No 174
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.21 E-value=0.12 Score=50.04 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=22.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...|.|.|+||+|||++++.+++.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999998653
No 175
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.19 E-value=0.18 Score=49.19 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=23.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+--+.|+||+|+|||+|++.++.+.+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34577899999999999999999886
No 176
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.12 E-value=0.099 Score=52.58 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=23.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...|+|.|+||+|||++++.+++.++
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987654
No 177
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.10 E-value=0.14 Score=46.96 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=21.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|+||+|||+|++.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 47899999999999999999875
No 178
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.06 E-value=0.16 Score=48.85 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=22.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
...|.|.|+||+|||++++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999876
No 179
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.05 E-value=0.14 Score=49.49 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~ 367 (720)
.|.|+|++|+|||++++.+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 588999999999999999998
No 180
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.02 E-value=0.15 Score=48.58 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
.|.|.|.||+|||++++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999865
No 181
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.01 E-value=0.16 Score=48.11 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=22.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.++|+++|+||+|||+|++++....+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 57999999999999999998876543
No 182
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.99 E-value=0.52 Score=46.76 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.7
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
..++|+|+|++|+|||+|++.+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45799999999999999999998643
No 183
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.98 E-value=0.14 Score=51.94 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
..|+|+|.||+|||++++.+++.+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999864
No 184
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.97 E-value=0.15 Score=46.64 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|+||+|||+|++.+..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999988875
No 185
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=89.95 E-value=0.15 Score=49.57 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-.+.|+||+|+|||+|++.+.+..+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4688999999999999999998765
No 186
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.80 E-value=0.14 Score=47.14 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|+||+|||+|++.+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 47899999999999999999875
No 187
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.77 E-value=0.17 Score=49.52 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
--+.|+||+|+|||+|++.++...
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998754
No 188
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.76 E-value=0.18 Score=47.96 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=22.1
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..++|+++|+||+|||+|++.+..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 568999999999999999999876
No 189
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.67 E-value=0.16 Score=46.61 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|++.+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999998875
No 190
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.66 E-value=0.27 Score=45.17 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
.++|+++|++|+|||+|++.+...-
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4789999999999999999987643
No 191
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.65 E-value=0.14 Score=47.20 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
++|+++|+||+|||+|++.+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999998864
No 192
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.64 E-value=0.15 Score=49.57 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=22.4
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
...|.|.|+||+|||++++.+++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999865
No 193
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.63 E-value=0.15 Score=47.24 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.+.|+++|+||+|||+|++.+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 46899999999999999998864
No 194
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.63 E-value=0.19 Score=47.12 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
--+.|+||.|+|||+|++.++..+|
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3578999999999999999999874
No 195
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.59 E-value=0.18 Score=46.27 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
++|+++|++|+|||+|++.+..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999998865
No 196
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.58 E-value=0.15 Score=48.63 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.5
Q ss_pred EEEEcCCCCHHHHHHHHHHhhC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~ 369 (720)
|.|.|+||+|||++++.+++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999876
No 197
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.58 E-value=0.16 Score=46.70 Aligned_cols=23 Identities=43% Similarity=0.582 Sum_probs=20.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|+||+|||+|++.+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 36899999999999999998875
No 198
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.57 E-value=0.16 Score=46.73 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
.++|+++|++|+|||+|++.+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 478999999999999999988753
No 199
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.49 E-value=0.16 Score=49.10 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=19.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~ 367 (720)
.|.|.|+||+|||++++.+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 200
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.49 E-value=0.17 Score=46.26 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|++.+..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999999875
No 201
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.42 E-value=0.17 Score=46.59 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHH
Q psy17703 345 EINILLCGDPGTSKSQLLSYVY 366 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va 366 (720)
.+.|+++|+||+|||+|++.+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEEECCCCCCHHHHHHHHc
Confidence 3689999999999999999875
No 202
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=89.38 E-value=0.13 Score=50.06 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=23.7
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...-+.|+|++|+|||+|++.++..++
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345788999999999999999998875
No 203
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=89.33 E-value=0.2 Score=48.88 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=22.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
--+.|+||+|+|||+|++.+.+..|
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999998876
No 204
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.33 E-value=0.18 Score=46.95 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|+||+|||+|++.+..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 47899999999999999999875
No 205
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.33 E-value=0.18 Score=46.24 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|+||+|||+|++.+..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999999875
No 206
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.32 E-value=0.16 Score=49.64 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
--++|+|+||+|||+|++.++..+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357889999999999999998543
No 207
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.27 E-value=0.2 Score=49.39 Aligned_cols=25 Identities=24% Similarity=0.639 Sum_probs=22.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
--+.|+||+|+|||+|++.++...|
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999999876
No 208
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.24 E-value=0.18 Score=45.95 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
.++|+++|++|+|||+|++.+...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 367999999999999999998753
No 209
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.18 E-value=0.19 Score=46.20 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|+||+|||+|++.+..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 47899999999999999998875
No 210
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.10 E-value=0.18 Score=48.34 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
+.+.|+|++|+|||+|++.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 679999999999999999998753
No 211
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=89.09 E-value=0.16 Score=48.04 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=16.9
Q ss_pred cEEEEcCCCCHHHHHHHHH
Q psy17703 347 NILLCGDPGTSKSQLLSYV 365 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~v 365 (720)
-+.|+|++|+|||+|++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999974
No 212
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.06 E-value=0.19 Score=47.35 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=21.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|+||+|||+|++.+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 47999999999999999999875
No 213
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.05 E-value=0.19 Score=46.73 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|+||+|||+|++.+..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 47899999999999999998875
No 214
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.03 E-value=0.2 Score=45.68 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=19.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHhh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~ 368 (720)
+|+++|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998763
No 215
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.01 E-value=0.19 Score=48.82 Aligned_cols=22 Identities=14% Similarity=0.004 Sum_probs=19.8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
--++|+|+||+|||+|+..++.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999986
No 216
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.99 E-value=0.18 Score=47.65 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
..|.|+|++|+|||++++.+++.+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999865
No 217
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.98 E-value=0.16 Score=48.12 Aligned_cols=23 Identities=22% Similarity=0.621 Sum_probs=20.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.+.|+|+|+||+|||+|++.+..
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 36799999999999999998875
No 218
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.95 E-value=0.22 Score=48.37 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=22.8
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
...+|+++|+||+|||+|+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999988644
No 219
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=88.93 E-value=0.25 Score=52.03 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.8
Q ss_pred ccEEEEcCCCCHHHHHHHHHH
Q psy17703 346 INILLCGDPGTSKSQLLSYVY 366 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va 366 (720)
+.|+++|+||+|||+|+..+.
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~ 186 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLK 186 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTC
T ss_pred ceEEEECCCCccHHHHHHHHh
Confidence 479999999999999998774
No 220
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.88 E-value=0.19 Score=49.93 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.3
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
--+.|+||+|+|||+|++.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3578899999999999999973
No 221
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=88.84 E-value=0.66 Score=46.54 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=22.4
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
..++|+|+|.||+|||+|+..+...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 4689999999999999999998764
No 222
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.83 E-value=0.2 Score=49.59 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
--++|+||||+|||+|++.++..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46889999999999999999873
No 223
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.80 E-value=0.2 Score=46.62 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=21.3
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..++|+++|++|+|||+|++.+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 357999999999999999988875
No 224
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.78 E-value=0.2 Score=46.44 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
.++|+++|++|+|||+|++.+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 479999999999999999998763
No 225
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.71 E-value=0.23 Score=49.19 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=23.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
+--+.|+||.|+|||+|++.++...|.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 346789999999999999999998863
No 226
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.69 E-value=0.25 Score=45.47 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.4
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..++|+++|++|+|||+|+..+..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999998864
No 227
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.54 E-value=0.17 Score=51.82 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.++.|+||+|+|||+|++.++...+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5789999999999999999998764
No 228
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=88.51 E-value=0.18 Score=48.89 Aligned_cols=25 Identities=16% Similarity=0.196 Sum_probs=22.3
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.-+.|.|++|+|||++++.++..++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999998764
No 229
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=88.46 E-value=0.21 Score=47.08 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
++|+++|+||+|||+|++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 47899999999999999988753
No 230
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=88.43 E-value=0.22 Score=47.28 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|+||+|||+|++.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 47999999999999999998875
No 231
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=88.43 E-value=0.2 Score=46.95 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|+||+|||+|++.+..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 57899999999999999988865
No 232
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.40 E-value=0.21 Score=46.34 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
..+.|+|+||+|||+|++.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999753
No 233
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.39 E-value=0.21 Score=48.77 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=23.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...|+|+|+||+|||++++.+++.++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999998764
No 234
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.35 E-value=0.27 Score=45.71 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.6
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
....|+++|++|+|||+|++.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 467999999999999999999875
No 235
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.33 E-value=0.79 Score=45.97 Aligned_cols=24 Identities=33% Similarity=0.510 Sum_probs=21.7
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..++|+|+|+||+|||+|+..+..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhC
Confidence 458999999999999999999875
No 236
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=88.31 E-value=0.13 Score=56.54 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=31.4
Q ss_pred CcceeeccCCccchhhhhhhh-cC--------CCCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 320 HCFSLVHNRSHFTDKQLVRLQ-ET--------PAEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 320 ~~~~~~~~~s~~~d~Q~iklQ-E~--------pg~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..|.+..+.+.|.+...+.-+ +. +..-=.++.|+||+|||+++...+.
T Consensus 127 ~~~~v~~~t~l~~~~~~l~~l~~~~~~~~~~~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 127 RRVAVSSESVVYSDMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEEGGGSCCHHHHHHHHHHTTCBTTBCCCCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cEEEEECCchhhccHHHHHHHHHHHhhhccccccccEEEEEcCCCCCHHHHHHHHhc
Confidence 345566666667766656333 22 1222457899999999999987765
No 237
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.27 E-value=0.26 Score=46.65 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.4
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
....|+++|++|+|||+|+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999998764
No 238
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.26 E-value=0.27 Score=46.52 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=22.2
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
..++|+++|++|+|||+|++++...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3589999999999999999998764
No 239
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.26 E-value=0.23 Score=46.14 Aligned_cols=23 Identities=13% Similarity=0.385 Sum_probs=20.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|++.+..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 47999999999999999998874
No 240
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.19 E-value=0.23 Score=46.22 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
..++|+++|++|+|||+|++.+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4579999999999999999988764
No 241
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.18 E-value=0.22 Score=51.28 Aligned_cols=23 Identities=30% Similarity=0.258 Sum_probs=20.7
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
.|+|.|+||+|||++++.+++..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999999754
No 242
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.17 E-value=0.17 Score=50.71 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=23.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...+.|.|+||+|||++++.+++.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998664
No 243
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.16 E-value=0.24 Score=46.18 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|++.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 57999999999999999998875
No 244
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=88.10 E-value=0.24 Score=46.23 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|++.+..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 47899999999999999998875
No 245
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.09 E-value=0.24 Score=46.52 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|+||+|||+|++.+..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999999875
No 246
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.08 E-value=0.29 Score=62.03 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
..+|++||||||||+|+.+++...
T Consensus 1083 ~~~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A 1083 RIVEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCChHHHHHHHHHHh
Confidence 359999999999999999988643
No 247
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=88.05 E-value=0.24 Score=46.40 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.4
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..++|+++|++|+|||+|++.+..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 357999999999999999998875
No 248
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.03 E-value=0.24 Score=46.41 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.4
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
...|.|+|+||+|||+|++.+...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 249
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.01 E-value=0.26 Score=51.83 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=22.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.|+|+||||+|||++++.+++.++
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999999875
No 250
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.00 E-value=0.22 Score=46.27 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|+||+|||+|++.+..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 47999999999999999998853
No 251
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.96 E-value=0.26 Score=46.68 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.7
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
...+|+++|++|+|||+|++.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999999999875
No 252
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=87.92 E-value=0.25 Score=47.20 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.5
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..++|+++|++|+|||+|++.+..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999998875
No 253
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.92 E-value=0.29 Score=52.70 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.6
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
..-.++|+||||+|||+|++.+++..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34578999999999999999999864
No 254
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.91 E-value=0.35 Score=46.19 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=22.1
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+.+.|+|++|+|||+|++.+.....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 6899999999999999999987543
No 255
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.88 E-value=0.24 Score=46.69 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.+.|+++|+||+|||+|++.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999998875
No 256
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=87.86 E-value=0.28 Score=45.74 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=21.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|++.+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999988875
No 257
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=87.85 E-value=0.24 Score=50.13 Aligned_cols=26 Identities=15% Similarity=0.163 Sum_probs=23.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.-.|.|+|+||+|||++++.+++.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998664
No 258
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.83 E-value=0.25 Score=46.41 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|++.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 47999999999999999998875
No 259
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=87.75 E-value=0.21 Score=46.63 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.+.|+++|+||+|||+|++.+..
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999998875
No 260
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.71 E-value=0.23 Score=52.86 Aligned_cols=25 Identities=24% Similarity=0.615 Sum_probs=22.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.+++|+|+||+|||++++.+++.+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4799999999999999999998764
No 261
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.69 E-value=0.25 Score=47.52 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.|.|.|+||+|||++++.+++.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 588999999999999999998765
No 262
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=87.69 E-value=0.21 Score=50.43 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=22.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...|.|.|++|+|||++++.+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999997664
No 263
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=87.65 E-value=0.26 Score=47.30 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
...|.|.|+||+|||++++.+++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999986
No 264
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.64 E-value=0.28 Score=49.31 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+||.|+|||+|++.++.+.+
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 477999999999999999998765
No 265
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.64 E-value=0.27 Score=46.87 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.8
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..++|+++|++|+|||+|++.+..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999999998876
No 266
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.61 E-value=0.23 Score=49.27 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=20.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+||.|+|||+|++.++.+.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 467899999999999999987664
No 267
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=87.57 E-value=0.27 Score=45.96 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=21.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|++.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhh
Confidence 57999999999999999999875
No 268
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.56 E-value=0.2 Score=49.60 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=15.1
Q ss_pred cEEEEcCCCCHHHHHHHHHH-hhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVY-DLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va-~~~pr 371 (720)
-+.|+||+|+|||++++.++ ...|.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp EEEEECSCC----CHHHHHHC----C
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 47899999999999999999 87753
No 269
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=87.50 E-value=0.26 Score=47.65 Aligned_cols=23 Identities=26% Similarity=0.638 Sum_probs=21.0
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
.+.|+|++|+|||+|++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 270
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.45 E-value=0.27 Score=46.39 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|+..+..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECcCCCCHHHHHHHHHc
Confidence 47999999999999999999875
No 271
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=87.45 E-value=0.27 Score=46.48 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|++.+..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 47999999999999999998875
No 272
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=87.44 E-value=0.51 Score=45.11 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=21.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
.++|+++|+||+|||+|++.+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 579999999999999999998764
No 273
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=87.42 E-value=0.27 Score=46.63 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.+.|+++|++|+|||+|++.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHh
Confidence 57999999999999999988765
No 274
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=87.38 E-value=0.58 Score=52.25 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=44.6
Q ss_pred CCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCC
Q psy17703 662 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDS 716 (720)
Q Consensus 662 ~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~ 716 (720)
.++.++||+++++.+...+++++|+++.+++ +|....++.+. +++|+||.-.
T Consensus 110 ~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i--~G~~~~~~~~~-iI~ATN~lpe 161 (500)
T 3nbx_X 110 AEIVFLDEIWKAGPAILNTLLTAINERQFRN--GAHVEKIPMRL-LVAASNELPE 161 (500)
T ss_dssp CSEEEEESGGGCCHHHHHHHHHHHHSSEEEC--SSSEEECCCCE-EEEEESSCCC
T ss_pred ceeeeHHhHhhhcHHHHHHHHHHHHHHhccC--CCCcCCcchhh-hhhccccCCC
Confidence 3468999999999999999999999999988 78889999886 6777787543
No 275
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.38 E-value=0.27 Score=46.25 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
...|.|+|++|+|||+|++.+..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999875
No 276
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=87.33 E-value=0.39 Score=45.46 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=20.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|++.+..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 47999999999999999999875
No 277
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=87.29 E-value=0.28 Score=46.54 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=20.8
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..+.|+++|++|+|||+|++.+..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 458999999999999999976654
No 278
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=87.27 E-value=0.31 Score=49.01 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=23.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...|.|.|+||+|||++++.+++.+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35799999999999999999998764
No 279
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=87.24 E-value=0.29 Score=46.57 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.5
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..++|+++|+||+|||+|++.+..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeeEEEEECcCCCCHHHHHHHHhc
Confidence 358999999999999999998875
No 280
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=87.20 E-value=0.28 Score=46.95 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|+||+|||+|++.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999998875
No 281
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=87.15 E-value=0.29 Score=46.36 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=21.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|++.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHc
Confidence 58999999999999999999875
No 282
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=87.12 E-value=0.16 Score=49.32 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-|.|.|++|+|||++++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998764
No 283
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=87.11 E-value=0.28 Score=45.85 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|+||+|||+|++.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 47899999999999999998874
No 284
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=87.10 E-value=0.29 Score=46.27 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|++.+..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 47999999999999999998865
No 285
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.08 E-value=0.27 Score=49.19 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.2
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.+.|+||.|+|||+|++.++.+.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 578999999999999999987665
No 286
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.08 E-value=0.28 Score=48.55 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=18.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
--++|.|+||+|||+|+..++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999876654
No 287
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.06 E-value=0.29 Score=46.47 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
.+.|+++|++|+|||+|++.+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 579999999999999999988764
No 288
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=87.03 E-value=0.53 Score=44.67 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=21.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
.++|+++|++|+|||+|++.+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 579999999999999999998763
No 289
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=87.00 E-value=0.3 Score=46.11 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.4
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
.++|+++|+||+|||+|++.+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 479999999999999999998753
No 290
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.97 E-value=0.3 Score=50.93 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.4
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
+-.+.|+||+|+|||+|++.+++..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4468899999999999999999876
No 291
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=86.95 E-value=0.29 Score=47.00 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|+||+|||+|++.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999998875
No 292
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=86.89 E-value=0.28 Score=46.13 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.5
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..++|+++|+||+|||+|++.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999999998864
No 293
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=86.87 E-value=0.31 Score=46.26 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|++.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 47999999999999999998875
No 294
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=86.82 E-value=0.3 Score=46.83 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=21.6
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..++|+++|++|+|||+|++.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCcCHHHHHHHHHh
Confidence 357999999999999999999875
No 295
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=86.77 E-value=0.33 Score=45.72 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.8
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
....|+++|++|+|||+|++.+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999988753
No 296
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=86.69 E-value=0.33 Score=46.25 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.4
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
...|+++|+||+|||+|++.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 57999999999999999998875
No 297
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=86.63 E-value=0.32 Score=46.53 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.6
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
..++|+++|++|+|||+|++.+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3589999999999999999988753
No 298
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.61 E-value=0.33 Score=45.86 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.6
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..++|+++|++|+|||+|++.+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999999998874
No 299
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=86.57 E-value=0.29 Score=46.01 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.2
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..++|+++|++|+|||+|++.+..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Confidence 358999999999999999999875
No 300
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.56 E-value=0.29 Score=50.44 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=20.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
-++|.|+||+|||+|++.++..+
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
No 301
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=86.52 E-value=0.34 Score=46.34 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..+.|+++|++|+|||+|++++..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999999998765
No 302
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=86.49 E-value=0.31 Score=48.13 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=20.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+||.|+|||+|++.++.+.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 467899999999999999987664
No 303
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.45 E-value=0.32 Score=54.58 Aligned_cols=27 Identities=15% Similarity=0.452 Sum_probs=24.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
.-+++++||+|+|||++++++...+++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 446999999999999999999998864
No 304
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.37 E-value=0.31 Score=47.61 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.2
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.+.-|+|.||||+|||+|+..+++...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 356799999999999999999987654
No 305
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.35 E-value=0.33 Score=48.07 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=18.2
Q ss_pred ccEEEEcCCCCHHHHHHHHHH
Q psy17703 346 INILLCGDPGTSKSQLLSYVY 366 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va 366 (720)
--+++.|+||+|||+|+..++
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 468899999999999987765
No 306
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.35 E-value=0.32 Score=48.35 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.8
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...-|.|.|+||+|||++++.+++.++
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 346789999999999999999998775
No 307
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.34 E-value=0.35 Score=49.26 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+-.++++||+|+|||++++.++...+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCC
Confidence 34699999999999999999998763
No 308
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.28 E-value=0.36 Score=51.04 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=23.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
..|+|+||+|+|||+|+..+++.++.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~ 66 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPL 66 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCC
Confidence 46899999999999999999998763
No 309
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.24 E-value=0.25 Score=46.29 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.4
Q ss_pred CCccEEEEcCCCCHHHHHHHHHH
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVY 366 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va 366 (720)
..++|+++|+||+|||+|+..+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999998764
No 310
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=86.20 E-value=0.32 Score=49.35 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+||.|+|||+|++.++.+.+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 477899999999999999987665
No 311
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=86.19 E-value=0.35 Score=46.23 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.3
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.+.|+|+|+||+|||+|+..+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 36799999999999999988874
No 312
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=86.19 E-value=0.22 Score=46.64 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=10.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|+||+|||+|++.+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEECCCCC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999988753
No 313
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=86.11 E-value=0.32 Score=49.52 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+||.|+|||+|++.++.+.+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 467899999999999999987665
No 314
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.11 E-value=0.35 Score=46.48 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.1
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..++|+++|+||+|||+|+..+..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 358999999999999999998874
No 315
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=86.04 E-value=0.35 Score=46.14 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..++|+++|++|+|||+|++.+..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999999998864
No 316
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=86.00 E-value=0.33 Score=46.62 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|++.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 47999999999999999998864
No 317
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=85.99 E-value=0.33 Score=48.94 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.2
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+||.|+|||+|++.++.+.+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999987664
No 318
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=85.98 E-value=0.36 Score=45.54 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.1
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
....|+++|+||+|||+|++.+..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999999998853
No 319
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=85.96 E-value=0.32 Score=51.34 Aligned_cols=27 Identities=22% Similarity=0.767 Sum_probs=23.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
+-.++++|++|+|||+|++.++...++
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 347999999999999999999988764
No 320
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=85.95 E-value=0.31 Score=47.46 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.4
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..++|+++|++|+|||+|++.+..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 458999999999999999998874
No 321
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=85.94 E-value=0.35 Score=46.83 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.+.|+++|++|+|||+|++.+..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 57999999999999999999876
No 322
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.92 E-value=0.36 Score=46.70 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.+.|+++|++|+|||+|++.+..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 47999999999999999998875
No 323
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=85.87 E-value=0.35 Score=50.51 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=21.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
-.++++|++|+|||+|++.+++.+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 489999999999999999998865
No 324
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=85.84 E-value=0.34 Score=46.92 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|++.+..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 47999999999999999998874
No 325
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=85.80 E-value=0.34 Score=48.65 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-.+.|+||.|+|||+|++.++.+.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3578999999999999999987765
No 326
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=85.79 E-value=0.35 Score=46.04 Aligned_cols=23 Identities=22% Similarity=0.559 Sum_probs=20.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|++.+..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999998854
No 327
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=85.77 E-value=0.35 Score=46.84 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=22.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..-+.|.|++|+|||++++.++..++
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45689999999999999999998663
No 328
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=85.76 E-value=0.38 Score=46.98 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..|.|.|++|+|||++++.+++
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999987
No 329
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=85.72 E-value=0.39 Score=50.01 Aligned_cols=25 Identities=32% Similarity=0.240 Sum_probs=22.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-.++++|++|+|||+|++.+++..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC
Confidence 5899999999999999999988763
No 330
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=85.71 E-value=0.35 Score=48.13 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+||.|+|||+|++.++...+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 578999999999999999987664
No 331
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.70 E-value=0.36 Score=49.33 Aligned_cols=25 Identities=20% Similarity=0.064 Sum_probs=21.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
+--++|+|+||+|||+|+..++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999998644
No 332
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=85.70 E-value=0.39 Score=51.26 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=23.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
+-.++|+|++|+|||+|++.+++..+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 457999999999999999999987653
No 333
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.66 E-value=0.35 Score=48.47 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+||.|+|||+|++.++.+.+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 477999999999999999987664
No 334
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=85.62 E-value=0.4 Score=46.68 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.3
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..+.|+++|++|+|||+|++.+..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHhc
Confidence 578999999999999999998865
No 335
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=85.57 E-value=0.35 Score=49.64 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+||.|+|||+|++.++.+.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 477999999999999999987665
No 336
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=85.56 E-value=0.36 Score=49.27 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.0
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+||.|+|||+|++.++.+.+
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Confidence 467899999999999999987664
No 337
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=85.53 E-value=0.26 Score=49.38 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.3
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
--+.|+||.|+|||+|++.++.+.+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3578999999999999999986654
No 338
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=85.52 E-value=0.37 Score=45.95 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.6
Q ss_pred CCccEEEEcCCCCHHHHHHHHHH
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVY 366 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va 366 (720)
..++|+++|+||+|||+|++.+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999874
No 339
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=85.52 E-value=0.36 Score=48.79 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.+.|+||.|+|||+|++.++.+.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 578999999999999999987654
No 340
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.48 E-value=0.47 Score=44.76 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-.+|+|+.|+|||+|++++..++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 457999999999999999998775
No 341
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=85.40 E-value=0.42 Score=46.13 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=20.9
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
..+.|+++|++|+|||+|+..+...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3579999999999999999988753
No 342
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=85.37 E-value=0.3 Score=52.11 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=23.5
Q ss_pred CCCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 343 PAEINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 343 pg~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+++ .++++||+|+|||++++.++...+
T Consensus 122 ~~g-~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 122 PRG-LVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SSE-EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCC-EEEEECCCCCCHHHHHHHHHhccc
Confidence 344 899999999999999999998764
No 343
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.28 E-value=0.4 Score=45.46 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.4
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
.++|+++|++|+|||+|++.+...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 479999999999999999988753
No 344
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=85.24 E-value=0.42 Score=46.05 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.1
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..++|+++|++|+|||+|++.+..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 468999999999999999988874
No 345
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=85.20 E-value=0.38 Score=49.25 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+||.|+|||+|++.++.+.+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999987664
No 346
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=85.20 E-value=0.36 Score=51.46 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
--++|+||||+|||+|+..++..+
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999988754
No 347
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=85.15 E-value=0.42 Score=50.84 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
+--+.|+||||+|||+|++.++...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999998765
No 348
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=85.13 E-value=0.33 Score=46.55 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHH
Q psy17703 345 EINILLCGDPGTSKSQLLSYVY 366 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va 366 (720)
.+.|+++|+||+|||+|++.+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999999874
No 349
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.12 E-value=0.38 Score=48.79 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.0
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+||.|+|||+|++.++.+.+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 477899999999999999987664
No 350
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=85.11 E-value=0.41 Score=45.89 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=21.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|++.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999998876
No 351
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=85.10 E-value=0.41 Score=46.16 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.+.|+++|+||+|||+|++.+..
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 57999999999999999988875
No 352
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=85.07 E-value=0.52 Score=50.27 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=23.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
-.+.|+|++|+|||+|++.+++..+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46889999999999999999998753
No 353
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=85.07 E-value=0.41 Score=46.01 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.+.|+++|+||+|||+|++.+..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhh
Confidence 47999999999999999998865
No 354
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=84.98 E-value=0.45 Score=46.04 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
..|.|+|.+|+|||++++.+++.+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468899999999999999999864
No 355
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=84.95 E-value=0.4 Score=48.58 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+||.|+|||+|++.++.+.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 477999999999999999988765
No 356
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=84.93 E-value=0.39 Score=49.38 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.2
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+||.|+|||+|++.++.+.+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 477999999999999999987765
No 357
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=84.92 E-value=0.35 Score=45.78 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=20.7
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..++|+++|++|+|||+|++.+..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 368999999999999999988754
No 358
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=84.81 E-value=0.35 Score=50.64 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=23.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
..-+.|.|++|+|||+|++.++..++.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccc
Confidence 456889999999999999999998754
No 359
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=84.72 E-value=0.39 Score=49.01 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+||.|+|||+|++.++.+.+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 477999999999999999987664
No 360
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.70 E-value=0.44 Score=45.95 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|++.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 46899999999999999998875
No 361
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=84.68 E-value=0.41 Score=48.78 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=21.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+||.|+|||+|++.++.+.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 477899999999999999987664
No 362
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=84.61 E-value=1.1 Score=46.41 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=21.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
.+.|+|+|+||+|||+|++.+...
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999987653
No 363
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.54 E-value=0.44 Score=51.96 Aligned_cols=26 Identities=27% Similarity=0.207 Sum_probs=23.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
-.++++||+|+|||++++++...++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 36899999999999999999997753
No 364
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=84.53 E-value=0.42 Score=48.57 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
++|.|+|+||+|||+|++.+...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999754
No 365
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=84.25 E-value=0.51 Score=50.33 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.7
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
-+.|+||.|+|||+|++.++.+.++
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4678899999999999999987753
No 366
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=84.24 E-value=0.41 Score=55.31 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=15.1
Q ss_pred cEEEEcCCCCHHHHHHHHH
Q psy17703 347 NILLCGDPGTSKSQLLSYV 365 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~v 365 (720)
-.|+.||||||||+.+-.+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~ 225 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEI 225 (646)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHH
Confidence 4689999999999865443
No 367
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=84.20 E-value=0.5 Score=50.46 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=21.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
-+.|+||.|+|||+|++.++.+.++
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCchHHHHHHHHhcCCCC
Confidence 4678999999999999999987753
No 368
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=84.19 E-value=0.48 Score=46.28 Aligned_cols=23 Identities=43% Similarity=0.575 Sum_probs=20.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|++.+..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHH
T ss_pred eeEEEEECcCCCCHHHHHHHHhc
Confidence 47999999999999999998875
No 369
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=84.15 E-value=0.42 Score=52.11 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
.-|+|+|+||+|||++++.+++.+
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc
Confidence 468899999999999999987644
No 370
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=84.08 E-value=0.44 Score=45.76 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.8
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
....|+++|+||+|||+|++.+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999998853
No 371
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=84.07 E-value=0.5 Score=50.21 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=21.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.|+||.|+|||+|++.++.+.+
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCccHHHHHHHHHcCCC
Confidence 467889999999999999998765
No 372
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=84.00 E-value=0.47 Score=47.43 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=22.2
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.-+-|.|+.|+|||++++.++..++
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4588999999999999999998763
No 373
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=83.92 E-value=0.53 Score=50.25 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.7
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
-+.|+||.|+|||+|++.++.+.++
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCCC
Confidence 4678899999999999999987753
No 374
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=83.91 E-value=0.48 Score=44.87 Aligned_cols=24 Identities=17% Similarity=0.540 Sum_probs=21.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
...+|+++|++|+|||+|++.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999998854
No 375
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=83.90 E-value=0.45 Score=48.36 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
--+.|+||.|+|||+|++.++.+.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 357899999999999999997654
No 376
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.89 E-value=0.39 Score=51.58 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.-.++++||+|+|||++++.+++..+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34699999999999999999998764
No 377
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=83.86 E-value=0.56 Score=49.63 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=22.2
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-|.|.||+|+|||++++.+++.++
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 588999999999999999999876
No 378
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=83.85 E-value=0.37 Score=45.51 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.5
Q ss_pred CCccEEEEcCCCCHHHHHHHHHH
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVY 366 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va 366 (720)
..++|+++|+||+|||+|+..+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999998773
No 379
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=83.79 E-value=0.58 Score=48.85 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.-+++.||+|+|||+|+..+++.++
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCC
Confidence 3578999999999999999999876
No 380
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=83.61 E-value=0.55 Score=50.18 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
-+.|+||.|+|||+|++.++.+.++
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCchHHHHHHHHhcCCCC
Confidence 4678899999999999999987753
No 381
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=83.46 E-value=0.42 Score=46.89 Aligned_cols=24 Identities=17% Similarity=0.065 Sum_probs=21.2
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
|+ -+.|+||.|+|||+|++.++.+
T Consensus 22 Ge-~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NT-IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CS-EEEEECCTTSSTTHHHHHHHHH
T ss_pred CC-EEEEECCCCCCHHHHHHHHhcC
Confidence 44 4778999999999999999988
No 382
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=83.42 E-value=0.57 Score=50.40 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
-+.|+||.|+|||+|++.++.+.++
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCC
Confidence 3668999999999999999987753
No 383
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=83.39 E-value=0.57 Score=50.27 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
-+.|+||.|+|||+|++.++.+.++
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Confidence 4678899999999999999988753
No 384
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=83.31 E-value=0.58 Score=50.22 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
-+.|+||.|+|||+|++.++.+.++
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEEP 55 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCCC
Confidence 4678899999999999999988753
No 385
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=83.24 E-value=0.64 Score=45.25 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..|.|.|+||+|||++++.+++.+.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999998764
No 386
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=83.15 E-value=0.54 Score=47.59 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.+.|+|+|+||+|||+|+..+..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 46899999999999999999875
No 387
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=83.11 E-value=0.61 Score=48.79 Aligned_cols=25 Identities=8% Similarity=0.109 Sum_probs=22.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
-|++.||+|+|||+|+..+++.++.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCcc
Confidence 4789999999999999999997753
No 388
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=83.09 E-value=0.55 Score=50.90 Aligned_cols=21 Identities=33% Similarity=0.172 Sum_probs=18.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHH
Q psy17703 346 INILLCGDPGTSKSQLLSYVY 366 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va 366 (720)
--++|+||||+|||+|+..++
T Consensus 179 ei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHH
Confidence 358999999999999999665
No 389
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=83.07 E-value=0.56 Score=46.51 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=22.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...|.|.|+||+|||++++.+++.+.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999998654
No 390
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=83.02 E-value=0.52 Score=46.29 Aligned_cols=24 Identities=29% Similarity=0.503 Sum_probs=21.3
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
....|+++|++|+|||+|+..+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457999999999999999998864
No 391
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=82.88 E-value=0.51 Score=50.28 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
-+.|+||.|+|||+|++.++.+.++
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4678899999999999999987653
No 392
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=82.86 E-value=0.55 Score=48.19 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=20.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
...|.|.|+||+|||++++.+++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
No 393
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=82.84 E-value=2 Score=41.45 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=18.4
Q ss_pred CceeeccccccCChHHHHHHHHHHH
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVME 434 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE 434 (720)
-.+++|||+.-++++....+.++.+
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~~ 106 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIAE 106 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4699999999998776655555443
No 394
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=82.81 E-value=0.55 Score=48.87 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=22.3
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.-+.|.|++|+|||+|++.++..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4588999999999999999998765
No 395
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=82.74 E-value=0.59 Score=45.79 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.3
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.+.|+|+|+||+|||+|+..+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999988763
No 396
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=82.68 E-value=0.52 Score=48.98 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=20.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
...|+|+|++|+|||+|++.++..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999999998764
No 397
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=82.57 E-value=0.57 Score=49.08 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=21.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
.--++|+|+||+|||+|+..++..+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHH
Confidence 3468999999999999999887643
No 398
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=82.54 E-value=0.5 Score=49.24 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=22.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
--+.|+|++|+|||++++.++...+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4688899999999999999998764
No 399
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=82.51 E-value=0.93 Score=51.51 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..|+|.|.||+|||++++.+++.+.
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998764
No 400
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=82.31 E-value=0.63 Score=49.26 Aligned_cols=24 Identities=21% Similarity=0.012 Sum_probs=20.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
.--++|+|+||+|||+|+..++..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988864
No 401
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=82.31 E-value=1.5 Score=42.44 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=18.9
Q ss_pred cEEEEcCCCCHHH-HHHHHHHhhC
Q psy17703 347 NILLCGDPGTSKS-QLLSYVYDLV 369 (720)
Q Consensus 347 ~vLL~G~PGtGKS-~ll~~va~~~ 369 (720)
=.+++|+.|+||| .|++++.+..
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~ 45 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQ 45 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 3578999999999 7888887743
No 402
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=82.31 E-value=0.38 Score=46.26 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.2
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
....+.|+|++|+|||+|++.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999987643
No 403
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=82.21 E-value=0.6 Score=49.63 Aligned_cols=23 Identities=13% Similarity=0.050 Sum_probs=19.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
--++|+|+||+|||+|+..++..
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999998888753
No 404
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=82.19 E-value=0.67 Score=45.59 Aligned_cols=23 Identities=13% Similarity=0.385 Sum_probs=19.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
...|+|+|++|+|||+|+..+..
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECcCCcCHHHHHHHHHh
Confidence 46799999999999999987653
No 405
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=82.18 E-value=0.5 Score=44.81 Aligned_cols=24 Identities=13% Similarity=0.353 Sum_probs=21.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.+.|+|++|+|||+|++.+.+..+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 367999999999999999998764
No 406
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=82.15 E-value=0.65 Score=45.24 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
...|.++|++|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4679999999999999998888654
No 407
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=82.00 E-value=0.3 Score=46.65 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=6.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
.++|+++|++|+|||+|++.+...
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 479999999999999999887643
No 408
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=81.97 E-value=0.62 Score=48.60 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=20.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
.--++|+|+||+|||+|+..++..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988753
No 409
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=81.91 E-value=0.61 Score=47.67 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
...|.|+|+||+|||+|++.+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 357999999999999999999753
No 410
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=81.82 E-value=0.63 Score=45.19 Aligned_cols=54 Identities=9% Similarity=0.126 Sum_probs=37.6
Q ss_pred Cceeecccccc------CChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhh
Q psy17703 410 SGVCCIDEFDK------MSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLL 483 (720)
Q Consensus 410 ~gI~~IDEidk------m~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLl 483 (720)
-.++++||+.- ++.+ .++++++++ |.+..+|-|.| .-|+.|+
T Consensus 121 yDlvILDEi~~al~~g~l~~~---ev~~~l~~R-------------p~~~~vIlTGr----------------~ap~~l~ 168 (196)
T 1g5t_A 121 LDMVVLDELTYMVAYDYLPLE---EVISALNAR-------------PGHQTVIITGR----------------GCHRDIL 168 (196)
T ss_dssp CSEEEEETHHHHHHTTSSCHH---HHHHHHHTS-------------CTTCEEEEECS----------------SCCHHHH
T ss_pred CCEEEEeCCCccccCCCCCHH---HHHHHHHhC-------------cCCCEEEEECC----------------CCcHHHH
Confidence 36899999943 4443 356666533 45667777777 4679999
Q ss_pred ccceeEEEecCC
Q psy17703 484 SRFDLIFLLLDP 495 (720)
Q Consensus 484 sRFdli~~l~d~ 495 (720)
..-|++-.+...
T Consensus 169 e~AD~VTem~~v 180 (196)
T 1g5t_A 169 DLADTVSELRPV 180 (196)
T ss_dssp HHCSEEEECCCS
T ss_pred HhCcceeeecce
Confidence 999998887653
No 411
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=81.73 E-value=0.78 Score=43.72 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.4
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
++.-+||.|++|+|||+++..+.+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999988876
No 412
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=81.47 E-value=0.75 Score=43.64 Aligned_cols=28 Identities=21% Similarity=0.747 Sum_probs=21.9
Q ss_pred heeecccCCceeeeeeccCcccCCccCCCCCCCCc
Q psy17703 287 AFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHC 321 (720)
Q Consensus 287 ~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~ 321 (720)
..|+|+.||+... + ..|..||.|+....
T Consensus 137 ~~~~C~~CG~i~~-----~--~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 137 KVYICPICGYTAV-----D--EAPEYCPVCGAPKE 164 (170)
T ss_dssp CEEECTTTCCEEE-----S--CCCSBCTTTCCBGG
T ss_pred CeeEeCCCCCeeC-----C--CCCCCCCCCCCCHH
Confidence 5799999999875 1 36779999997543
No 413
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=81.44 E-value=0.76 Score=44.89 Aligned_cols=27 Identities=26% Similarity=0.675 Sum_probs=21.7
Q ss_pred heeecccCCceeeeeeccCcccCCccCCCCCCCC
Q psy17703 287 AFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNH 320 (720)
Q Consensus 287 ~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~ 320 (720)
..|+|..||+... | ..|..||.|+...
T Consensus 170 ~~~~C~~CG~i~~-----g--~~p~~CP~C~~~k 196 (202)
T 1yuz_A 170 KFHLCPICGYIHK-----G--EDFEKCPICFRPK 196 (202)
T ss_dssp CEEECSSSCCEEE-----S--SCCSBCTTTCCBG
T ss_pred cEEEECCCCCEEc-----C--cCCCCCCCCCCCh
Confidence 4799999998854 2 5789999999753
No 414
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=81.41 E-value=0.63 Score=47.39 Aligned_cols=22 Identities=27% Similarity=0.697 Sum_probs=20.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHH
Q psy17703 345 EINILLCGDPGTSKSQLLSYVY 366 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va 366 (720)
.++|+++|+||+|||+|+..+.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHh
Confidence 5799999999999999998874
No 415
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=81.36 E-value=0.7 Score=47.15 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=21.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|.|+|+||+|||+|+.++..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g 25 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTG 25 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 47899999999999999999865
No 416
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=81.34 E-value=0.7 Score=46.72 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~ 368 (720)
+|.|+|+||+|||+|+.++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999998653
No 417
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=81.30 E-value=0.55 Score=45.57 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.3
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..+.|+++|++|+|||+|+..+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhC
Confidence 457999999999999999998865
No 418
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=81.27 E-value=0.73 Score=44.74 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=21.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
-..++++|+||+|||+|+..++..+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999888754
No 419
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=81.25 E-value=0.55 Score=51.27 Aligned_cols=35 Identities=31% Similarity=0.436 Sum_probs=25.9
Q ss_pred hhhhhhcCCCCc-cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 335 QLVRLQETPAEI-NILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 335 Q~iklQE~pg~i-~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
+.+.+.=.+|.+ ++.|+|++|+|||+|++.++...
T Consensus 31 ~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 31 QLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 344443334654 69999999999999999998763
No 420
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=81.17 E-value=0.68 Score=47.83 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=23.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..-|.|.|++|+|||+|++.+++.++
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45688999999999999999998775
No 421
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=81.16 E-value=0.65 Score=48.41 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=21.8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
--+.|+||.|+|||+|++.++++.+
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CEEEEECCCCchHHHHHHHHHcCCC
Confidence 4688999999999999999987664
No 422
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=81.09 E-value=0.72 Score=48.34 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.9
Q ss_pred EEEEcCCCCHHHHHHHHHHh
Q psy17703 348 ILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~ 367 (720)
+++.||||+|||+|+-.++.
T Consensus 31 teI~G~pGsGKTtL~Lq~~~ 50 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVS 50 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999655543
No 423
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=81.06 E-value=0.69 Score=48.12 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
--+.|+|+.|+|||++++.++..++
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999998763
No 424
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=81.06 E-value=0.75 Score=46.35 Aligned_cols=22 Identities=27% Similarity=0.157 Sum_probs=19.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~ 368 (720)
-+.|+||.|+|||+|++.++.+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999865
No 425
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=81.03 E-value=0.72 Score=48.43 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=22.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.-+.|.|++|+|||++++.+..++.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999998775
No 426
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=80.98 E-value=0.71 Score=47.06 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=19.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHhh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~ 368 (720)
-+.|+||.|+|||+|++.++.+
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 427
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=80.97 E-value=0.67 Score=47.18 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
.+.|+||.|+|||+|++.++.+.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998755
No 428
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=80.94 E-value=1 Score=40.04 Aligned_cols=29 Identities=14% Similarity=0.405 Sum_probs=22.1
Q ss_pred hheeecccCCceeeeeeccCcccCCc-cCCCCCCCC
Q psy17703 286 EAFFRCIVCNYSTTVEIDRGRIHEPT-LCTNCSTNH 320 (720)
Q Consensus 286 ~~~f~C~~Cg~~~~~~~~~~~~~~p~-~C~~C~~~~ 320 (720)
.+.|+|.+||++.... ..+. .||.|+...
T Consensus 71 p~~~~C~~CG~~~e~~------~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 71 KVELECKDCSHVFKPN------ALDYGVCEKCHSKN 100 (119)
T ss_dssp CCEEECSSSSCEECSC------CSTTCCCSSSSSCC
T ss_pred cceEEcCCCCCEEeCC------CCCCCcCccccCCC
Confidence 4579999999987652 2456 899999854
No 429
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=80.85 E-value=0.63 Score=53.49 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=25.7
Q ss_pred cchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 331 FTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 331 ~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
+-+.|.--++..-..-..++.||||||||+++..+...
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHH
Confidence 44556654443223446899999999999987766553
No 430
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=80.74 E-value=0.7 Score=47.92 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=21.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
--+.|+|++|+|||+|++.++...+
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3578999999999999999987664
No 431
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=80.71 E-value=0.67 Score=47.90 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
--+.|+||.|+|||+|++.++.+.+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3577899999999999999987765
No 432
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=80.69 E-value=0.71 Score=48.77 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
..-+.|+|+||+|||+|++.++..+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568899999999999999999765
No 433
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=80.61 E-value=1.3 Score=48.46 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=22.2
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
+.+.+.|+|+||+|||+|++.+...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999764
No 434
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=80.56 E-value=0.88 Score=45.20 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=22.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..|.+.|.+|+|||++++.+++.++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4588999999999999999999875
No 435
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=80.53 E-value=2.8 Score=41.31 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=21.2
Q ss_pred CCceeeccccccCChHHHHHHHHHHHhc
Q psy17703 409 DSGVCCIDEFDKMSDTTRSILHEVMEQQ 436 (720)
Q Consensus 409 d~gI~~IDEidkm~~~~~~~L~e~mE~~ 436 (720)
+-.+++|||+.-++++....+.++.+.+
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la~~g 128 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLSADG 128 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHHHTT
T ss_pred CCCEEEEechhcCCHHHHHHHHHHHHCC
Confidence 3468999999999987777776665443
No 436
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=80.42 E-value=0.67 Score=50.53 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=22.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
+.+|.|+|++|+|||+|++.++...
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCC
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCC
Confidence 4578999999999999999998754
No 437
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=80.41 E-value=0.81 Score=43.35 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=20.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
-+.+.|++|+|||+++..++..+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 37799999999999999998765
No 438
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=80.39 E-value=0.75 Score=48.46 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=22.4
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.--+.|+||+|+|||++++.++....
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999998663
No 439
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=80.22 E-value=1.1 Score=43.29 Aligned_cols=29 Identities=31% Similarity=0.812 Sum_probs=21.7
Q ss_pred heeecccCCceeeeeeccCcccCCccCCCCCCCCc
Q psy17703 287 AFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHC 321 (720)
Q Consensus 287 ~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~ 321 (720)
..|+|+.||+... | -..|..||.|+....
T Consensus 154 ~~~~C~~CG~~~~-----g-~~~p~~CP~C~~~k~ 182 (191)
T 1lko_A 154 TKWRCRNCGYVHE-----G-TGAPELCPACAHPKA 182 (191)
T ss_dssp EEEEETTTCCEEE-----E-EECCSBCTTTCCBGG
T ss_pred ceEEECCCCCEee-----C-CCCCCCCCCCcCCHH
Confidence 4699999999864 1 145679999998544
No 440
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=80.18 E-value=0.81 Score=41.90 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=23.1
Q ss_pred hheeecccCCceeeeeec----------cCcccC-----CccCCCCCCCC
Q psy17703 286 EAFFRCIVCNYSTTVEID----------RGRIHE-----PTLCTNCSTNH 320 (720)
Q Consensus 286 ~~~f~C~~Cg~~~~~~~~----------~~~~~~-----p~~C~~C~~~~ 320 (720)
.+.++|.+||++...... ...+.+ +..||.|+..+
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~ 117 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHD 117 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCC
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCc
Confidence 457999999998764320 011112 78899999854
No 441
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=79.99 E-value=0.86 Score=50.39 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
...|+|+|.||+|||++++.+++.+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998754
No 442
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=79.93 E-value=0.84 Score=43.37 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=20.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
-+.+.|++|+|||+|++.+...++
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcc
Confidence 478999999999999999987653
No 443
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=79.83 E-value=0.76 Score=51.59 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=22.3
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
..-|+|+|.||+|||++++.+++.+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998865
No 444
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=79.73 E-value=0.73 Score=49.74 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
--+.|+||.|+|||+|++.++.+.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 357899999999999999998754
No 445
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=79.68 E-value=0.85 Score=47.59 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=19.2
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
--++|.|+||+|||+|+..++.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4588999999999999988875
No 446
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=80.82 E-value=0.37 Score=46.24 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.7
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..++|+++|+||+|||+|++.+..
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 368999999999999999977753
No 447
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=79.58 E-value=0.54 Score=47.49 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=22.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...|.|.|.+|+|||++++.+++.+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35789999999999999999988764
No 448
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=79.56 E-value=0.84 Score=48.64 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
--+.|+|++|+|||+|++.++...+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3578999999999999999987554
No 449
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=79.39 E-value=0.85 Score=47.54 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
--++++|++|+|||+++..++..+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHH
Confidence 3588999999999999999987653
No 450
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=79.33 E-value=0.78 Score=52.49 Aligned_cols=60 Identities=23% Similarity=0.266 Sum_probs=49.1
Q ss_pred hcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecc-----e---eEEEcccceEEeecCCC
Q psy17703 655 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAG-----I---ICQLNARTSILAAANPC 714 (720)
Q Consensus 655 ~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g-----~---~~~l~~~~~~~~~~~p~ 714 (720)
+.+..++.++.++||++.|+......|+.+|+++.+.+..++ . ...+++++.|++|+||.
T Consensus 195 g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~ 262 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD 262 (604)
T ss_dssp CHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH
T ss_pred ceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH
Confidence 444567788999999999999999999999999999876221 1 55678899999999984
No 451
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=79.16 E-value=0.99 Score=48.22 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=21.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
-+-|+||.|+|||+|++.++.+.++
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHhcCCCC
Confidence 4678999999999999999987653
No 452
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=78.96 E-value=0.94 Score=48.05 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=22.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
...|.|+|+||+|||+|++.+....
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998754
No 453
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=78.94 E-value=0.91 Score=35.47 Aligned_cols=29 Identities=21% Similarity=0.588 Sum_probs=23.5
Q ss_pred hheeecccCCceeeeeeccCcccCCccCCCCCCC
Q psy17703 286 EAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTN 319 (720)
Q Consensus 286 ~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~ 319 (720)
...|.|..||.+.... ...+..||.|+.+
T Consensus 19 ~v~Y~C~~Cg~~~~l~-----~~~~iRC~~CG~R 47 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQ-----AKEVIRCRECGHR 47 (63)
T ss_dssp CCCCBCSSSCCBCCCC-----SSSCCCCSSSCCC
T ss_pred CeEEECCCCCCeeecC-----CCCceECCCCCcE
Confidence 5789999999998754 2467899999975
No 454
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=78.81 E-value=0.81 Score=51.73 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=23.3
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
.-.+.|+|++|+|||+|++.+++.+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 45799999999999999999998774
No 455
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=78.66 E-value=0.97 Score=49.15 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=22.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
...+.|+|++|+|||+|++.++...+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34789999999999999999998764
No 456
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=78.59 E-value=1.1 Score=41.33 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.2
Q ss_pred EEEEcCCCCHHHHHHHHHHhhC
Q psy17703 348 ILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~~~ 369 (720)
.+|+||.|+|||+++.++.-.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999997644
No 457
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=78.52 E-value=0.98 Score=43.24 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=18.3
Q ss_pred EEEEcCCCCHHHHHHHHHHh
Q psy17703 348 ILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 348 vLL~G~PGtGKS~ll~~va~ 367 (720)
+|++|++|+|||+++..++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 78999999999999998874
No 458
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=78.48 E-value=0.97 Score=48.14 Aligned_cols=23 Identities=17% Similarity=0.145 Sum_probs=19.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
--++|.|+||+|||+|+..++..
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999887764
No 459
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=78.46 E-value=0.99 Score=46.74 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
..|.|+|+||+|||+|++++...
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36999999999999999999863
No 460
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=78.25 E-value=0.92 Score=46.00 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.7
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..+.|+++|++|+|||+|+..+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999999999875
No 461
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=78.14 E-value=0.84 Score=54.01 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=25.9
Q ss_pred cchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 331 FTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 331 ~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
+.+.|.--++..-..-..++.||||||||+++..+...
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 45566654443223346899999999999987766654
No 462
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=78.01 E-value=0.73 Score=44.76 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=19.1
Q ss_pred CCccEEEEcCCCCHHHHHHHH
Q psy17703 344 AEINILLCGDPGTSKSQLLSY 364 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~ 364 (720)
..++|+++|++|+|||+|++.
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~ 34 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKR 34 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTT
T ss_pred cceEEEEECCCCCCHHHHHHH
Confidence 357999999999999999987
No 463
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=77.95 E-value=1 Score=44.18 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..-|.|.|++|+|||++++.+++.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999988664
No 464
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=77.89 E-value=0.98 Score=48.18 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
--++|+|+.|+|||++++.++..++
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Confidence 4588999999999999999998764
No 465
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=77.82 E-value=0.99 Score=46.75 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.2
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
-.++|+|++|+|||+++..++..+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999998765
No 466
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=77.81 E-value=1.2 Score=46.30 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
--+.|+|++|+|||+|++.+. ..+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 356789999999999999999 654
No 467
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=77.74 E-value=1.2 Score=47.16 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=22.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
--+.|+|++|+|||+|++.+++...
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3588999999999999999999874
No 468
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=77.47 E-value=1 Score=48.65 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
-|.|.||+|+|||+|+..+++.++.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred EEEEECcchhhHHHHHHHHHHHCCC
Confidence 4789999999999999999987763
No 469
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=77.43 E-value=0.85 Score=51.20 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=22.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+--++|.|+||+|||+|++.++...+
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 44689999999999999999987654
No 470
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=77.22 E-value=0.92 Score=43.83 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.9
Q ss_pred CCccEEEEcCCCCHHHHHHHHHH
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVY 366 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va 366 (720)
..++|+++|+||+|||+|++.+.
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCT
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 35799999999999999987664
No 471
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=77.20 E-value=1 Score=49.97 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
--++|+|+.|+|||++++.++..+.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHhh
Confidence 3588999999999999999987653
No 472
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=77.19 E-value=4.8 Score=39.47 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=18.1
Q ss_pred CceeeccccccCChHHHHHHHHHHH
Q psy17703 410 SGVCCIDEFDKMSDTTRSILHEVME 434 (720)
Q Consensus 410 ~gI~~IDEidkm~~~~~~~L~e~mE 434 (720)
-.+++|||+.-++++....|.++-+
T Consensus 102 ~dvViIDEaQF~~~~~V~~l~~l~~ 126 (214)
T 2j9r_A 102 MDVIAIDEVQFFDGDIVEVVQVLAN 126 (214)
T ss_dssp CCEEEECCGGGSCTTHHHHHHHHHH
T ss_pred CCEEEEECcccCCHHHHHHHHHHhh
Confidence 4689999999998876655544333
No 473
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=77.10 E-value=0.83 Score=45.53 Aligned_cols=25 Identities=20% Similarity=0.525 Sum_probs=21.5
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..+-|.|+||+|||++++.+++.+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999988653
No 474
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=77.00 E-value=1.1 Score=48.00 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=22.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
+-|++++|++|+|||++++.+...+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999987643
No 475
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=76.99 E-value=1.1 Score=45.67 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=21.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
...|.++|+||+|||+|+.++..
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g 48 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVG 48 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHT
T ss_pred CCeEEEEeCCCCCHHHHHHHHHC
Confidence 46899999999999999999975
No 476
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=76.97 E-value=1.1 Score=49.33 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=23.0
Q ss_pred CCCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 343 PAEINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 343 pg~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
+|. -+.|+||.|+|||+|++.++.+.+
T Consensus 137 ~Ge-~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 137 EGP-RVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SCC-CEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhCccc
Confidence 354 588899999999999999998774
No 477
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=76.88 E-value=0.91 Score=50.98 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=25.3
Q ss_pred CccEEEEcCCCCHHHHHHHH--HHhhCC---CCccccCCc
Q psy17703 345 EINILLCGDPGTSKSQLLSY--VYDLVP---RSQYTSGKG 379 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~--va~~~p---r~~~~~g~~ 379 (720)
+-.++|+||+|+|||+|++. ++.+.+ ..+|.++..
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 34688999999999999999 556553 335555543
No 478
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=76.45 E-value=1.4 Score=48.38 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=22.8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
--+.|+||+|+|||+|++.+++..+.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCC
Confidence 45889999999999999999998753
No 479
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=76.32 E-value=1.7 Score=34.74 Aligned_cols=30 Identities=13% Similarity=0.477 Sum_probs=23.3
Q ss_pred hhheeecccCCceeeeeeccCcccCCccCCCCCCC
Q psy17703 285 REAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTN 319 (720)
Q Consensus 285 ~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~ 319 (720)
....|.|.+||.+.... ...+..||.|+.+
T Consensus 25 ~~v~Y~C~~CG~~~e~~-----~~d~irCp~CG~R 54 (70)
T 1twf_L 25 ATLKYICAECSSKLSLS-----RTDAVRCKDCGHR 54 (70)
T ss_dssp CCCCEECSSSCCEECCC-----TTSTTCCSSSCCC
T ss_pred ceEEEECCCCCCcceeC-----CCCCccCCCCCce
Confidence 46789999999997664 2346689999974
No 480
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=76.28 E-value=1.2 Score=44.94 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.9
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..++|+++|++|+|||+|+.++..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999999999875
No 481
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=76.15 E-value=1.3 Score=44.98 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
+.++++|.||+|||+|+..+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~ 121 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKG 121 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred hheEEeCCCCCCHHHHHHHHhc
Confidence 6899999999999999999875
No 482
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=76.07 E-value=1.4 Score=46.84 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=22.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHh--hCCC
Q psy17703 347 NILLCGDPGTSKSQLLSYVYD--LVPR 371 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~--~~pr 371 (720)
.|.++|++|+|||+|+.++.. .+|+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~ 62 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPR 62 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCC
Confidence 789999999999999999988 4454
No 483
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=75.93 E-value=0.63 Score=48.55 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=19.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
--+.|+|+||+|||+|++.+....
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 468899999999999999997654
No 484
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=75.90 E-value=1.8 Score=43.43 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=43.9
Q ss_pred ccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCC
Q psy17703 659 LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC 714 (720)
Q Consensus 659 ~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~ 714 (720)
.+..++.++||++.++.+....++..|++..+ ...|.....+.++.|++++|+-
T Consensus 98 ~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~~iI~atn~~ 151 (265)
T 2bjv_A 98 RADGGTLFLDELATAPMMVQEKLLRVIEYGEL--ERVGGSQPLQVNVRLVCATNAD 151 (265)
T ss_dssp HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEE--CCCCC--CEECCCEEEEEESSC
T ss_pred hcCCcEEEEechHhcCHHHHHHHHHHHHhCCe--ecCCCcccccCCeEEEEecCcC
Confidence 35568899999999999999999999999875 4555566678889999999984
No 485
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=75.76 E-value=1.3 Score=52.33 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=25.2
Q ss_pred cchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 331 FTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 331 ~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
+-+.|.--++..-..-..|+.||||||||+++..+..
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHH
Confidence 4456665554432344689999999999998765544
No 486
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=75.57 E-value=1.3 Score=45.80 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..|.|+|+||+|||+|+.++..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999875
No 487
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=75.48 E-value=1.4 Score=45.19 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.7
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703 344 AEINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 344 g~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
..+.++++|.||+|||+|+..+..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCceEEEEecCCCchHHHHHHHhc
Confidence 568999999999999999999874
No 488
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=75.31 E-value=1.3 Score=44.29 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..-|.|.|+||+|||++++.+++.+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999988663
No 489
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=75.18 E-value=1.1 Score=44.62 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=19.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVP 370 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~p 370 (720)
..-|.|.|++|+|||++++.+++.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999988764
No 490
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=75.06 E-value=1.3 Score=57.20 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=21.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
.-+++|+||||||||+|+.+++..+
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4599999999999999998887644
No 491
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=74.85 E-value=1.4 Score=48.48 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=24.1
Q ss_pred HHHHHHhhhcCCcHHHHHHHhhchhccCchhhHH
Q psy17703 83 RVELLKSLSRKPDIYERLTSAICPSIYGYEDVKK 116 (720)
Q Consensus 83 ~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk 116 (720)
+..-+-.+-.+|+.++.+...|-|+=|-+..-+.
T Consensus 17 E~~vLg~lL~~~~~~~~v~~~L~~edFy~~~h~~ 50 (454)
T 2r6a_A 17 EQAVLGAVFLDPAALVPASEILIPEDFYRAAHQK 50 (454)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHCCGGGCSSHHHHH
T ss_pred HHHHHHHHHcChHHHHHHHhcCCHHHcCCHHHHH
Confidence 3444566666888898888888888776655554
No 492
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=74.81 E-value=1.4 Score=47.08 Aligned_cols=22 Identities=14% Similarity=0.071 Sum_probs=18.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHhh
Q psy17703 347 NILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 347 ~vLL~G~PGtGKS~ll~~va~~ 368 (720)
-++|.|+||+|||+|+..++..
T Consensus 76 li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHH
Confidence 4777999999999999877654
No 493
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=74.80 E-value=1.4 Score=43.32 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLVPR 371 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~pr 371 (720)
..-|.+.|++|+|||++++.+++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 457899999999999999999998763
No 494
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=74.28 E-value=1.4 Score=46.73 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.7
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
...|.|+|.||+|||+|+..++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999988654
No 495
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=74.25 E-value=2 Score=42.60 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=27.8
Q ss_pred cchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703 331 FTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLV 369 (720)
Q Consensus 331 ~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~ 369 (720)
..++|.--++..-.+-+++++||+|+|||.++..++...
T Consensus 94 l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 94 LRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc
Confidence 446666444433334469999999999999988777654
No 496
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=74.10 E-value=1.6 Score=46.68 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
+.+.|+|+||+|||+|++.+.+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999875
No 497
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=73.96 E-value=1.8 Score=46.43 Aligned_cols=61 Identities=26% Similarity=0.363 Sum_probs=49.3
Q ss_pred cccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCC------CCCCC
Q psy17703 656 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP------CDSQW 718 (720)
Q Consensus 656 alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p------~~~~~ 718 (720)
....+++|+.++||++.|+...+..++..|+++++. .-|.....++++-|+||+|. ..|+|
T Consensus 226 ~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~rii~at~~~l~~~~~~g~f 292 (387)
T 1ny5_A 226 FFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFY--RLGGRKEIEVNVRILAATNRNIKELVKEGKF 292 (387)
T ss_dssp HHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEEC--CBTCCSBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred ceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEE--eCCCCceeeccEEEEEeCCCCHHHHHHcCCc
Confidence 345577899999999999999999999999998865 44455566777889999997 45665
No 498
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=73.81 E-value=1.9 Score=41.69 Aligned_cols=28 Identities=11% Similarity=0.023 Sum_probs=24.0
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhhCCCCc
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDLVPRSQ 373 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~~pr~~ 373 (720)
.-|.|.|++|+|||++++.+++.+.-..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~ 34 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPL 34 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCE
Confidence 4589999999999999999999886433
No 499
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=73.69 E-value=1.7 Score=46.32 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703 346 INILLCGDPGTSKSQLLSYVYDL 368 (720)
Q Consensus 346 i~vLL~G~PGtGKS~ll~~va~~ 368 (720)
..+.|+|.||+|||+|++++.+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 57899999999999999999763
No 500
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=73.66 E-value=1.2 Score=47.39 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=20.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHHh
Q psy17703 345 EINILLCGDPGTSKSQLLSYVYD 367 (720)
Q Consensus 345 ~i~vLL~G~PGtGKS~ll~~va~ 367 (720)
.++|+++|++|+|||+|++.+..
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHhC
Confidence 47899999999999999999754
Done!