RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17703
(720 letters)
>gnl|CDD|215947 pfam00493, MCM, MCM2/3/5 family.
Length = 327
Score = 418 bits (1076), Expect = e-142
Identities = 151/271 (55%), Positives = 191/271 (70%), Gaps = 19/271 (7%)
Query: 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGA 404
+IN+LL GDPGT+KSQLL YV L PR+ YTSGKGSSA GLTA + +DP+T + L+ GA
Sbjct: 57 DINVLLVGDPGTAKSQLLKYVAKLAPRAVYTSGKGSSAAGLTAAVVRDPDTGEWTLEAGA 116
Query: 405 LVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDS 464
LVLAD GVCCIDEFDKM++ R +HE MEQQT+SIAKAGI+ LNAR S+LAAANP
Sbjct: 117 LVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGIVATLNARCSVLAAANPIFG 176
Query: 465 QWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARH----------------- 507
+++ K++ +NI LP LLSRFDLIF+LLD E+ D LA+H
Sbjct: 177 RYDPKKSVAENINLPPPLLSRFDLIFVLLDKPDEERDEELAKHIVDLHRASDEEEIETED 236
Query: 508 -LDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLG-AGRGRISAYPRQLESLIR 565
+D +LR YIAYA+E++ P LS+EA ++L+ YV++RK RG I RQLESLIR
Sbjct: 237 EIDPELLRKYIAYARENIKPKLSDEAREKLVNWYVELRKESEGSRGSIPITVRQLESLIR 296
Query: 566 LSEAHAKMRYSETVEVQDVDEAWRLHREALK 596
LSEAHA++R SE V +DV+EA RL E+LK
Sbjct: 297 LSEAHARLRLSEEVTEEDVEEAIRLILESLK 327
Score = 143 bits (363), Expect = 9e-38
Identities = 56/112 (50%), Positives = 72/112 (64%), Gaps = 18/112 (16%)
Query: 610 SILTTGV-SSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLK-GALVLADSGVCCI 667
++ T+G SSAA LTAA+ + T + L+ GALVLAD GVCCI
Sbjct: 84 AVYTSGKGSSAA-----GLTAAVVR--------DPDTGE---WTLEAGALVLADGGVCCI 127
Query: 668 DEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWN 719
DEFDKM++ R +HE MEQQT+SIAKAGI+ LNAR S+LAAANP +++
Sbjct: 128 DEFDKMNEEDRVAIHEAMEQQTISIAKAGIVATLNARCSVLAAANPIFGRYD 179
Score = 79.1 bits (196), Expect = 7e-16
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 83 RVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDR 137
E ++ L++ PDIY++L +I PSIYG+EDVKK I+LQ+FGG KK + R
Sbjct: 1 DEEEIRELAKDPDIYDKLARSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRLR 55
>gnl|CDD|214631 smart00350, MCM, minichromosome maintenance proteins.
Length = 509
Score = 407 bits (1049), Expect = e-135
Identities = 154/275 (56%), Positives = 191/275 (69%), Gaps = 22/275 (8%)
Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
+INILLCGDPGT+KSQLL YV PR+ YT+GKGSSAVGLTA +T+DPETR+ L+ G
Sbjct: 235 GDINILLCGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEAG 294
Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
ALVLAD+GVCCIDEFDKM D+ R+ +HE MEQQT+SIAKAGI LNAR S+LAAANP
Sbjct: 295 ALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIG 354
Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARH---------------- 507
+++ T +NI LP +LSRFDL+F++LD E+ D LA+H
Sbjct: 355 GRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEEDEAF 414
Query: 508 ---LDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGA---GRGRISAYPRQLE 561
L LR YIAYA+E + P LSEEA+ +L++ YVD+RK + R I RQLE
Sbjct: 415 EPPLSQEKLRKYIAYAREKIKPKLSEEAADKLVKAYVDLRKEDSQTESRSSIPITVRQLE 474
Query: 562 SLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALK 596
S+IRLSEAHAKMR S+ VE DV+EA RL RE++
Sbjct: 475 SIIRLSEAHAKMRLSDVVEEADVEEAIRLLRESII 509
Score = 152 bits (386), Expect = 2e-39
Identities = 59/140 (42%), Positives = 82/140 (58%), Gaps = 5/140 (3%)
Query: 1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYK--THIDV 58
+P GQ P SV + DLVD +PGDRV VTGIYR VP ++ +VK + T+I+
Sbjct: 97 VPVGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNVP--YGFKLNTVKGLPVFATYIEA 154
Query: 59 VHFRKIDATRLYKQDEK-EHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKG 117
H RK+D R ++ E E ++ LS+ PDIYERL ++ PSIYG+ED+KK
Sbjct: 155 NHVRKLDYKRSFEDSSFSVQSLSDEEEEEIRKLSKDPDIYERLARSLAPSIYGHEDIKKA 214
Query: 118 IMLQMFGGTKKTFDETISDR 137
I+L +FGG K + + R
Sbjct: 215 ILLLLFGGVHKNLPDGMKIR 234
Score = 139 bits (353), Expect = 4e-35
Identities = 45/65 (69%), Positives = 54/65 (83%)
Query: 655 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC 714
GALVLAD+GVCCIDEFDKM D+ R+ +HE MEQQT+SIAKAGI LNAR S+LAAANP
Sbjct: 294 GALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPI 353
Query: 715 DSQWN 719
+++
Sbjct: 354 GGRYD 358
Score = 111 bits (279), Expect = 1e-25
Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 252 KTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPT 311
K ++R L + + +L+ I+G+V RTS + P+++ A F C C + EI GR EPT
Sbjct: 1 KPSSIRELRADHLGKLVRISGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQSGRETEPT 60
Query: 312 LCTN--CSTNHCFSLVHNRSHFTDKQLVRLQETPAEI 346
+C C + FSL H RS F D Q ++LQE+P E+
Sbjct: 61 VCPPRECQSPTPFSLNHERSTFIDFQKIKLQESPEEV 97
>gnl|CDD|224162 COG1241, MCM2, Predicted ATPase involved in replication control,
Cdc46/Mcm family [DNA replication, recombination, and
repair].
Length = 682
Score = 370 bits (953), Expect = e-118
Identities = 164/331 (49%), Positives = 207/331 (62%), Gaps = 27/331 (8%)
Query: 332 TDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITK 391
K L +I+ILL GDPGT+KSQLL YV L PR YTSGKGSSA GLTA + +
Sbjct: 306 VKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVR 365
Query: 392 DPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNA 451
D T + VL+ GALVLAD GVCCIDEFDKM++ R +HE MEQQT+SIAKAGI LNA
Sbjct: 366 DKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNA 425
Query: 452 RTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARH---- 507
R S+LAAANP +++ KT+ +NI LP LLSRFDLIF+L D E+ D +A H
Sbjct: 426 RCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDK 485
Query: 508 --------------------LDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLG 547
D +LR YI+YA+++++P L+EEA + L YV+MRK
Sbjct: 486 HRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKS 545
Query: 548 AGRGRISAYP---RQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLS 604
A P RQLES+IRL+EAHAKMR S+ VE +DVDEA RL +LK A DP
Sbjct: 546 ALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFSLKTVAVDPEK 605
Query: 605 GKIDVSILTTGVSSAARQRQLELTAALKKLV 635
GKID+ I+ G S + R + ++ +K+LV
Sbjct: 606 GKIDIDIIEPGKSKSKRDKIEKVLDIIKELV 636
Score = 137 bits (348), Expect = 7e-34
Identities = 53/137 (38%), Positives = 81/137 (59%), Gaps = 8/137 (5%)
Query: 1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVH 60
+P G+ P S+ + +DLVDS++PGDRV +TG+ R VP + R V++ +++
Sbjct: 189 VPGGELPRSIEVILEDDLVDSVRPGDRVKITGVVRIVPSRSLSGRRK-GPVFEIYLEANS 247
Query: 61 FRKIDATRLYKQDEKEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIML 120
K+D +E + E E +K L+++PDIY+ L +I PSIYG+EDVKK I+L
Sbjct: 248 VEKLDK-------REEVEITEEDEEEIKELAKRPDIYDILIKSIAPSIYGHEDVKKAILL 300
Query: 121 QMFGGTKKTFDETISDR 137
Q+FGG KK + R
Sbjct: 301 QLFGGVKKNLPDGTRIR 317
Score = 118 bits (297), Expect = 2e-27
Identities = 44/59 (74%), Positives = 49/59 (83%)
Query: 655 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP 713
GALVLAD GVCCIDEFDKM++ R +HE MEQQT+SIAKAGI LNAR S+LAAANP
Sbjct: 377 GALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANP 435
Score = 117 bits (296), Expect = 2e-27
Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 6/183 (3%)
Query: 170 IRLRPDIRTDRRIRQIFSLEDP---VLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGV 226
RLR + L+ L V+L+ L ++D +L L+ P+E+IP+ + +
Sbjct: 7 FRLRFKWEDILEYAENIILDKIINRSLEVDLSDLEEYDPELAGLLLENPEEIIPLFEKAL 66
Query: 227 NE-YFFERHPAAVLEHQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMR 285
+E +I VR N ++R L E I +L+++ G+V R S + P ++
Sbjct: 67 DEIALLLFPEVDRSLKKIHVRFKNLPNRLSIRELRSEHIGKLVSVEGIVTRASEVRPRLK 126
Query: 286 EAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTN--HCFSLVHNRSHFTDKQLVRLQETP 343
+A F C C VE R+ P C NC LV +S F D Q V++QE P
Sbjct: 127 KAVFECPKCGREVEVEQSEFRVEPPRECENCGKFGKGPLKLVPRKSEFIDFQKVKIQELP 186
Query: 344 AEI 346
+
Sbjct: 187 ELV 189
>gnl|CDD|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4;
Provisional.
Length = 915
Score = 274 bits (703), Expect = 2e-80
Identities = 127/346 (36%), Positives = 187/346 (54%), Gaps = 66/346 (19%)
Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYIT-KDPETRQMVLQT 402
IN+LLCGDPGT+KSQLL Y + L PRS YTSGK SS+VGLTA I + + + ++Q
Sbjct: 491 GIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQP 550
Query: 403 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC 462
GA+VLA+ GVCCIDE DK + +R L+EVMEQQT++IAKAGI+ L A T+ILA+ NP
Sbjct: 551 GAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPI 610
Query: 463 DSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL-------------- 508
+S++N +K +I+NI + +L +RFDLI+L+LD + D ++ +
Sbjct: 611 NSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGN 670
Query: 509 ---------------------------DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYV 541
D+ +LR YI +++ H P LS+EA + + + YV
Sbjct: 671 DEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYV 730
Query: 542 DMRKLG------------------------AGRGRISAYPRQLESLIRLSEAHAKMRYSE 577
MR+ +G I R + S+IR+S + A+MR S
Sbjct: 731 KMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLST 790
Query: 578 TVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQR 623
V D +A ++ + + QS DP +GKID L G+++ Q+
Sbjct: 791 VVTPADALQAVQIVKSSTFQSLVDPTTGKIDFDQLHQGITTNKMQQ 836
Score = 113 bits (285), Expect = 6e-26
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 6/129 (4%)
Query: 9 SVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDAT- 67
+ L Y+DL+DS++ GDRVTV GI + P++ + R++KS+Y ++V+H + I++T
Sbjct: 347 VINLNLYDDLIDSVKTGDRVTVVGILKVTPIRTSTTRRTLKSLYTYFVNVIHVKVINSTN 406
Query: 68 -----RLYKQDEKEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQM 122
+ K E+ F +V + LSR P IY L + PSI +VK G++ Q+
Sbjct: 407 ANQPEKGLKYLGNENDFSDLQVYKILELSRNPMIYRILLDSFAPSIKARNNVKIGLLCQL 466
Query: 123 FGGTKKTFD 131
F G K + D
Sbjct: 467 FSGNKNSSD 475
Score = 107 bits (269), Expect = 5e-24
Identities = 50/110 (45%), Positives = 70/110 (63%), Gaps = 13/110 (11%)
Query: 610 SILTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDE 669
SI T+G SS++ + LTA++K + M GA+VLA+ GVCCIDE
Sbjct: 519 SIYTSGKSSSS----VGLTASIK---------FNESDNGRAMIQPGAVVLANGGVCCIDE 565
Query: 670 FDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWN 719
DK + +R L+EVMEQQT++IAKAGI+ L A T+ILA+ NP +S++N
Sbjct: 566 LDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYN 615
Score = 92.4 bits (229), Expect = 4e-19
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 18/171 (10%)
Query: 195 VNLAHLAKFDSQLCQQLVCYPQEVIPILDMGV----NEYFFERHPAAVLEHQI---QVRP 247
V+L H+ FD L + LV +P + I LD + NE + + LE+ + R
Sbjct: 150 VDLMHVYSFDKVLYKLLVTFPADCIAELDKVLVKLFNELLSKHYSDLSLENNSFFPRARL 209
Query: 248 FNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCI-----------VCNY 296
N + + +L P D L+ +G V+R + I+PE+ A FRC C
Sbjct: 210 MNKPVSDCVGNLEPSMADSLVQFSGTVVRQTWIVPEITMACFRCRGQKKIGLNDYQPCTC 269
Query: 297 STTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRSHFTDKQLVRLQETPAEIN 347
+ +G ++EP LC C++ + F L HN ++ K++V+L ++ + +N
Sbjct: 270 EHYEYVIQGEVNEPLLCNECNSKYTFELNHNMCVYSTKKIVKLLQSNSSLN 320
>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction
only].
Length = 329
Score = 64.0 bits (156), Expect = 6e-11
Identities = 61/276 (22%), Positives = 102/276 (36%), Gaps = 34/276 (12%)
Query: 344 AEINILLCGDPGTSKSQL---LSYVYDL-VPRSQYTSG-KGSSAVGLTAYITKDPETRQM 398
A ++LL G PG K+ L L+ L R Q T S +G AY E +
Sbjct: 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEF 101
Query: 399 VLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAA 458
G L A + +DE ++ ++ L E +E++ +++ I +L ++A
Sbjct: 102 RFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTI-RLPPPFIVIAT 160
Query: 459 ANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIA 518
NP + + T LP LL RF L + P SE+ + + + D +
Sbjct: 161 QNPGEYE-GTY-------PLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLES 212
Query: 519 YAQEHLSP-------------TLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR 565
+ LS +S+E ++ +R+ S PR +L+
Sbjct: 213 LVKPVLSDEELLRLQKEVKKVPVSDEVIDYIVTLVAALREAPDVALGAS--PRASLALLA 270
Query: 566 LSEAHAKMRYSETVEVQDVDE----AWRLHREALKQ 597
A A + + V DV A HR L+
Sbjct: 271 ALRALALLDGRDAVIPDDVKALAEPALA-HRLILEL 305
Score = 30.9 bits (70), Expect = 2.4
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP 713
G L A + +DE ++ ++ L E +E++ +++ I +L ++A NP
Sbjct: 105 PGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTI-RLPPPFIVIATQNP 163
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam
entry includes some of the AAA proteins not detected by
the pfam00004 model.
Length = 135
Score = 45.4 bits (108), Expect = 1e-05
Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 25/150 (16%)
Query: 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKD-------PETRQMV 399
+LL G PGT KS+L + + S + V LT T++ +
Sbjct: 1 GVLLVGPPGTGKSELAERL------AAALSNRPVFYVQLTRDTTEEDLKGRRNIDPGGAS 54
Query: 400 LQTGALVLA--DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNAR-TSIL 456
G LV A + + +DE ++ + + L +++++ L + + G + + ++
Sbjct: 55 WVDGPLVRAAREGEIAVLDEINRANPDVLNSLLSLLDERRLLLPEGGELVKAAPDGFRLI 114
Query: 457 AAANPCDSQWNTSKTIIDNIRLPHTLLSRF 486
A NP D N L L SRF
Sbjct: 115 ATMNPLDRGLN---------ELSPALRSRF 135
Score = 32.7 bits (75), Expect = 0.21
Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 11/109 (10%)
Query: 622 QRQLELTAALKKLVILLGPSVTVTQQKLIMDLK--------GALVLA--DSGVCCIDEFD 671
+R + + L T K ++ G LV A + + +DE +
Sbjct: 17 ERLAAALSNRPVFYVQLTRDTTEEDLKGRRNIDPGGASWVDGPLVRAAREGEIAVLDEIN 76
Query: 672 KMSDTTRSILHEVMEQQTLSIAKAGIICQLNAR-TSILAAANPCDSQWN 719
+ + + L +++++ L + + G + + ++A NP D N
Sbjct: 77 RANPDVLNSLLSLLDERRLLLPEGGELVKAAPDGFRLIATMNPLDRGLN 125
>gnl|CDD|224160 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism].
Length = 423
Score = 45.5 bits (108), Expect = 7e-05
Identities = 53/237 (22%), Positives = 84/237 (35%), Gaps = 44/237 (18%)
Query: 399 VLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAA 458
Q G L A+ G+ +DE + + D L +V + + + GI + AR ++
Sbjct: 134 AFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGT 193
Query: 459 ANPCDSQWNTSKTIIDNIRLPHTLLSRFDL---IFLLLDPQ---------------SEQF 500
NP + + +R LL RF L LD + E F
Sbjct: 194 MNPEEGE----------LRPQ--LLDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAF 241
Query: 501 DARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQL 560
+ A LR I A+ LS ++ ++ I + R I
Sbjct: 242 LEKYAD--AQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVV----- 294
Query: 561 ESLIRLSEAHAKMRYSETVEVQDVDEAWRL---HREALKQSATDPLSGKIDVSILTT 614
+R ++A A +R VE +D+ EA L HR K + G+ID L
Sbjct: 295 ---VRAAKALAALRGRTEVEEEDIREAAELALLHRRRRK-PFIRTVLGEIDADELEA 347
Score = 32.4 bits (74), Expect = 0.92
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 655 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP 713
G L A+ G+ +DE + + D L +V + + + GI + AR ++ NP
Sbjct: 138 GLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNP 196
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 45.2 bits (107), Expect = 1e-04
Identities = 49/215 (22%), Positives = 82/215 (38%), Gaps = 34/215 (15%)
Query: 389 ITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQ 448
+ + Q V Q G L A GV +D + + D + L + +++ + + + GI
Sbjct: 64 VEESLAGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVV 123
Query: 449 LNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLA--- 505
A+ +++A +P + LP LL R L L D S D R+
Sbjct: 124 HPAKFALIATYDPAEGG----------GGLPDHLLDRLALHVSLEDVAS--QDLRVEIVR 171
Query: 506 ----RHLDIT-----VLRDYIAYAQEHL-SPTLSEEASQRLIQTYVDMRKLGAGRGRISA 555
+ +LR I A+E L T+S E + L+ T LG R
Sbjct: 172 RERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLT---AASLGISGHRADL 228
Query: 556 YPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL 590
+ +R ++AHA + V +D+ A L
Sbjct: 229 F------AVRAAKAHAALHGRTEVTEEDLKLAVEL 257
>gnl|CDD|182120 PRK09862, PRK09862, putative ATP-dependent protease; Provisional.
Length = 506
Score = 38.0 bits (88), Expect = 0.016
Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 28/170 (16%)
Query: 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAV-GLTAYITKDPETRQMVLQT--- 402
N+LL G PGT K+ L S + L+P S+A+ L + + RQ ++
Sbjct: 212 NLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHH 271
Query: 403 ----------------GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGII 446
G + LA +GV +DE + T L E +E + +++
Sbjct: 272 SASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAK 331
Query: 447 CQLNARTSILAAANPCDS---QWNTSKTIIDNI-----RLPHTLLSRFDL 488
AR ++AA NP + Q N ++ + RL L RFDL
Sbjct: 332 ITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDL 381
>gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The N-terminal
end matches very strongly a pfam Mg_chelatase domain
[Unknown function, General].
Length = 499
Score = 37.1 bits (86), Expect = 0.030
Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 32/173 (18%)
Query: 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAV-GLTAYITKDPETRQMVLQT--- 402
N+LL G PG+ K+ L S + ++P ++ + L + + +Q ++
Sbjct: 213 NLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHH 272
Query: 403 ----------------GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGII 446
G + LA +GV +DE + + L E +E ++SI++A
Sbjct: 273 SASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAK 332
Query: 447 CQLNARTSILAAANPCDSQWNTSKTIIDNI-----------RLPHTLLSRFDL 488
AR ++AA NPC + +L L R DL
Sbjct: 333 IFYPARFQLVAAMNPCPCG-HYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDL 384
Score = 32.5 bits (74), Expect = 0.80
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 655 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC 714
G + LA +GV +DE + + L E +E ++SI++A AR ++AA NPC
Sbjct: 289 GEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPC 348
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 34.0 bits (78), Expect = 0.093
Identities = 32/161 (19%), Positives = 49/161 (30%), Gaps = 21/161 (13%)
Query: 334 KQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYT--SGKGSSAVGLTAYITK 391
+ L E P N+LL G PGT K+ L + + + R S +
Sbjct: 8 EALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAEL 67
Query: 392 DPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNA 451
+ L A GV IDE D +S ++ L V+E
Sbjct: 68 F-GHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRID-------RE 119
Query: 452 RTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLL 492
++ A N L L R D+ ++
Sbjct: 120 NVRVIGATNR-----------PLLGDLDRALYDRLDIRIVI 149
>gnl|CDD|223679 COG0606, COG0606, Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones].
Length = 490
Score = 35.3 bits (82), Expect = 0.12
Identities = 38/138 (27%), Positives = 54/138 (39%), Gaps = 23/138 (16%)
Query: 347 NILLCGDPGTSKSQLLSYVYDLVPR---------SQYTSGKGSSAVGLTAYITKDP---- 393
N+LL G PGT K+ L S + L+P S S G G P
Sbjct: 200 NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCP-LKIHRPFRAP 258
Query: 394 ---------ETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAG 444
V + G + LA +GV +DE + + L E +E + I++AG
Sbjct: 259 HHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAG 318
Query: 445 IICQLNARTSILAAANPC 462
AR ++AA NPC
Sbjct: 319 SKVTYPARFQLVAAMNPC 336
>gnl|CDD|116340 pfam07726, AAA_3, ATPase family associated with various cellular
activities (AAA). This Pfam entry includes some of the
AAA proteins not detected by the pfam00004 model.
Length = 131
Score = 32.5 bits (75), Expect = 0.27
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 21/127 (16%)
Query: 348 ILLCGDPGTSKSQL---LSYVYDL-VPRSQYTSG-KGSSAVGLTAYITKDPETRQMVLQT 402
+LL G PG +K+ L L+ L R Q+T S G Y D +TR+ +
Sbjct: 2 VLLEGVPGLAKTLLARTLARSLGLDFRRIQFTPDLLPSDITGTEVY---DQKTREFEFRP 58
Query: 403 GA----LVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAA 458
G ++LAD E ++ T+S L E M+++ ++I G L +LA
Sbjct: 59 GPIFANVLLAD-------EINRAPPKTQSALLEAMQERQVTI--GGETHPLPEPFFVLAT 109
Query: 459 ANPCDSQ 465
NP + +
Sbjct: 110 QNPIEQE 116
>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI.
Magnesium-chelatase is a three-component enzyme that
catalyzes the insertion of Mg2+ into protoporphyrin IX.
This is the first unique step in the synthesis of
(bacterio)chlorophyll. Due to this, it is thought that
Mg-chelatase has an important role in channelling inter-
mediates into the (bacterio)chlorophyll branch in
response to conditions suitable for photosynthetic
growth. ChlI and BchD have molecular weight between
38-42 kDa.
Length = 207
Score = 33.3 bits (77), Expect = 0.28
Identities = 42/173 (24%), Positives = 64/173 (36%), Gaps = 32/173 (18%)
Query: 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYT----SGKGSSAVGL---TAYITKDP-----E 394
N+L+ G PG+ K+ L + ++P S GL I + P
Sbjct: 24 NLLMIGPPGSGKTMLAKRLPGILPPLTEQEALEVTAIHSVAGLGGDGGLIRRRPFRAPHH 83
Query: 395 TRQMV--------LQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGII 446
+ + G + LA +GV +DE + S L + +E ++I++A
Sbjct: 84 SASAAALVGGGSIPRPGEISLAHNGVLFLDELPEFSRRVLESLRQPLEDGEITISRARAK 143
Query: 447 CQLNARTSILAAANPC------DSQWNTSKTIIDNI-----RLPHTLLSRFDL 488
AR ++AA NPC D T I RL LL R DL
Sbjct: 144 VTFPARFQLVAAMNPCPCGYLGDPDKRCRCT-PRQIRRYLSRLSGPLLDRIDL 195
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 34.3 bits (79), Expect = 0.29
Identities = 49/215 (22%), Positives = 70/215 (32%), Gaps = 43/215 (20%)
Query: 399 VLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAA 458
Q G L A G+ IDE + + D +L + + + G+ AR ++
Sbjct: 116 AFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGT 175
Query: 459 ANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF------------------LLLDPQSEQF 500
NP + P LL RF L L D E F
Sbjct: 176 MNPEEGDLR-----------PQ-LLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAF 223
Query: 501 DARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQL 560
AR A + LR+ IA A+ L ++ R I + G R
Sbjct: 224 AARWAA--EQEELRNRIARARSLLPSVRISDSLIRFISELC--IEFGVDGHRADIV---- 275
Query: 561 ESLIRLSEAHAKMRYSETVEVQDVDEAWRL---HR 592
+ R + A A + V +DV EA L HR
Sbjct: 276 --MARAARALAALDGRRRVTAEDVREAAELVLPHR 308
>gnl|CDD|132284 TIGR03240, arg_catab_astD, succinylglutamic semialdehyde
dehydrogenase. Members of this protein family are
succinylglutamic semialdehyde dehydrogenase (EC
1.2.1.71), the fourth enzyme in the arginine
succinyltransferase (AST) pathway for arginine
catabolism [Energy metabolism, Amino acids and amines].
Length = 484
Score = 32.4 bits (74), Expect = 0.97
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 492 LLDPQSEQFDARLARHLDIT---VLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGA 548
LL P Q DA LAR +++ + + A Q + +S +A+QRL+ + LG
Sbjct: 281 LLVPDGAQGDAFLARLVEVAERLTVGAWDAEPQPFMGAVISLQAAQRLLAAQAKLLALG- 339
Query: 549 GRGRISAYPRQLES 562
G+ RQL+
Sbjct: 340 --GKSLLAMRQLDP 351
>gnl|CDD|233120 TIGR00764, lon_rel, lon-related putative ATP-dependent protease.
This model represents a set of proteins with extensive
C-terminal homology to the ATP-dependent protease La,
product of the lon gene of E. coli. The model is based
on a seed alignment containing only archaeal members,
but several bacterial proteins match the model well.
Because several species, including Thermotoga maritima
and Treponema pallidum, contain both a close homolog of
the lon protease and nearly full-length homolog of the
members of this family, we suggest there may also be a
functional division between the two families. Members of
this family from Pyrococcus horikoshii and Pyrococcus
abyssi each contain a predicted intein [Protein fate,
Degradation of proteins, peptides, and glycopeptides].
Length = 608
Score = 32.1 bits (73), Expect = 1.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYT 375
N+LL G+PG KS L + +L+P +
Sbjct: 39 NVLLIGEPGVGKSMLAKAMAELLPDEELE 67
>gnl|CDD|216792 pfam01927, DUF82, Protein of unknown function DUF82. This
prokaryotic protein family has no known function. The
protein contains four conserved cysteines that may be
involved in metal binding or disulphide bridges.
Length = 146
Score = 30.7 bits (70), Expect = 1.3
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 19/73 (26%)
Query: 256 LRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDR----GRIHEPT 311
+R L+PE+ QL VI + ++ F RC+ CN + + GR+
Sbjct: 64 VRSLDPEE--QLRE----VIERFGLKLSLKPEFSRCLKCN-GPLEPVSKEEVAGRVPPYV 116
Query: 312 L--------CTNC 316
C C
Sbjct: 117 YERYDEFWRCPKC 129
>gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid
amidohydrolases) catalyze the hydrolysis of
N-acyl-D-amino acids to produce the corresponding
D-amino acids, which are used as intermediates in the
synthesis of pesticides, bioactive peptides, and
antibiotics.
Length = 415
Score = 31.5 bits (72), Expect = 1.5
Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 22/166 (13%)
Query: 552 RISAYPRQLESLIRLSEAH-----AKMRYSETVEVQDVDEAWRLHREALK-------QSA 599
R+ A +L +L R++ + +RY ++ +DE RL RE + +SA
Sbjct: 193 RLYAGTAELVALARVAARYGGVYQTHVRYEGDSILEALDELLRLGRETGRPVHISHLKSA 252
Query: 600 TDPLSGKIDVSILTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLKGALVL 659
P GKID + AAR L++TA + V + IM +
Sbjct: 253 GAPNWGKID---RLLALIEAARAEGLQVTADVYPYGAGSEDDV-----RRIMAHPVVMGG 304
Query: 660 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNART 705
+D G D TR + H V E++ LS+ +A + ++
Sbjct: 305 SDGGALGKPHPRSYGDFTRVLGHYVRERKLLSLEEA--VRKMTGLP 348
>gnl|CDD|239932 cd04486, YhcR_OBF_like, YhcR_OBF_like: A subfamily of OB-fold
domains similar to the OB folds of Bacillus subtilis
YhcR. YhcR is a sugar-nonspecific nuclease, which is
active in the presence of Ca2+ and Mn2+. It cleaves RNA
endonucleolytically, producing 3'-monophosphate
nucleosides. YhcR appears to be the major Ca2+
activated nuclease of B. subtilis. YhcR may be
localized in the cell wall.
Length = 78
Score = 28.8 bits (65), Expect = 1.8
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 11 VLFTYNDLVDSIQPGDRVTVTG 32
+F Y + GD V VTG
Sbjct: 34 GIFVYTGSGADVAVGDLVRVTG 55
>gnl|CDD|226911 COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic
ion transport and metabolism].
Length = 423
Score = 31.1 bits (71), Expect = 1.9
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 248 FNAKKTRNLRHLNPE-----DIDQLITINGMVIRTSNIIPEMREAF 288
F + N+R LN + TING+V+ IPE +A
Sbjct: 346 FIIDGSANVRDLNRALDWNLPDEDARTINGLVLEELEEIPEEGQAV 391
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 30.3 bits (69), Expect = 2.5
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 536 LIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQ 582
+++ + K G GR+ A LE+L + EA ++ E V+VQ
Sbjct: 117 ILEAAWERLKPG---GRLVANAITLETLAKALEALEQLGGREIVQVQ 160
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 30.0 bits (67), Expect = 2.6
Identities = 28/161 (17%), Positives = 49/161 (30%), Gaps = 29/161 (18%)
Query: 347 NILLCGDPGTSKSQLLSYVYDLVPRSQY---------TSGKGSSAVGLTAYITKDPETRQ 397
IL+ G PG+ K+ L + + + + L K
Sbjct: 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSG 63
Query: 398 MVLQTGALVLA---DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTS 454
+ AL LA V +DE + D + L ++E+ L + + +
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLL-----KSEKNLT 118
Query: 455 ILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDP 495
++ N + P L RFD +LL
Sbjct: 119 VILTTND------------EKDLGPALLRRRFDRRIVLLLI 147
>gnl|CDD|222290 pfam13654, AAA_32, AAA domain. This family includes a wide variety
of AAA domains including some that have lost essential
nucleotide binding residues in the P-loop.
Length = 509
Score = 30.9 bits (71), Expect = 2.6
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 552 RISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEA 587
++S + L+R ++ A++ +E V+ + V+ A
Sbjct: 467 KLSLRFGDIADLLREADYWARLAGAELVDAEHVERA 502
>gnl|CDD|149738 pfam08771, Rapamycin_bind, Rapamycin binding domain. This domain
forms an alpha helical structure and binds to rapamycin.
Length = 100
Score = 28.7 bits (65), Expect = 2.8
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 565 RLSEAHAK-MRYSETVEVQDVDEAWRLHREALKQ 597
L EAH +Y T + D+++AW ++ ++
Sbjct: 63 DLQEAHEWLQKYKRTGDEGDLNQAWDIYYSVFRR 96
>gnl|CDD|224570 COG1656, COG1656, Uncharacterized conserved protein [Function
unknown].
Length = 165
Score = 29.7 bits (67), Expect = 3.5
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 15/66 (22%)
Query: 262 EDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYS---TTVEIDRGRIHEPT------- 311
+QL + + P + F RC CN + E + ++ E
Sbjct: 75 SIEEQLAE----FLARLGLKPRLFPEFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEF 130
Query: 312 -LCTNC 316
C C
Sbjct: 131 YRCPKC 136
>gnl|CDD|233815 TIGR02294, nickel_nikA, nickel ABC transporter, nickel/metallophore
periplasmic binding protein. Members of this family are
periplasmic nickel-binding proteins of nickel ABC
transporters. Most appear to be lipoproteins. This
protein was previously (circa 2003) thought to mediate
binding to nickel through water molecules, but is now
thought to involve a chelating organic molecule, perhaps
butane-1,2,4-tricarboxylate, acting as a metallophore
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 500
Score = 29.8 bits (67), Expect = 5.8
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 13/116 (11%)
Query: 366 YDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLA--DSGVCCIDEFDKMSD 423
Y + R++ G+ +T + D ETR + ++G + L + G +D F ++ D
Sbjct: 177 YAVFVRNENYWGEKPKLKKVTVKVIPDAETRALAFESGEVDLIFGNEGSIDLDTFAQLKD 236
Query: 424 TTR--SILHEVMEQQTLSI-AKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNI 476
+ L + M + L + L R +I A N ++I NI
Sbjct: 237 DGDYQTALSQPMNTRMLLLNTGKNATSDLAVRQAINHAVN--------KQSIAKNI 284
>gnl|CDD|183698 PRK12715, flgK, flagellar hook-associated protein FlgK;
Provisional.
Length = 649
Score = 29.7 bits (66), Expect = 6.2
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 25 GDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDEKEHKFPPER- 83
G V+V+ IYR V N ++RS S Y+T D + + I +L QD P +
Sbjct: 54 GAGVSVSSIYRNVDQFANAQVRSTLS-YRTQYDAFYNQAIQIDKLLSQDGSSISVPLQTF 112
Query: 84 VELLKSLSRKPD 95
+ + L+ PD
Sbjct: 113 FDSIGQLNSTPD 124
>gnl|CDD|150269 pfam09536, DUF2378, Protein of unknown function (DUF2378). This
family consists of a set of at least 17 paralogous
proteins in Myxococcus xanthus DK 1622 and and 12 in
Stigmatella aurantiaca DW4/3-1. Members are about 200
amino acids in length. The function is unknown.
Length = 178
Score = 28.8 bits (65), Expect = 6.2
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 524 LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQD 583
L + EE ++RL Q +D+ + +YP + +RL A A+ +
Sbjct: 17 LLDRVREELAERLRQAGLDLDRP-----LFFSYP--VADWLRLLRAAARELAPQ----LP 65
Query: 584 VDEAWRL 590
++ A+R
Sbjct: 66 LEAAYRA 72
>gnl|CDD|222228 pfam13567, DUF4131, Domain of unknown function (DUF4131). This
domain is frequently found to the N-terminus of the
Competence domain, pfam03772.
Length = 173
Score = 28.9 bits (65), Expect = 6.3
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 5 QTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNP 43
V+++ D + ++PGDR+ VTG + NP
Sbjct: 109 PVSGKVLVYVRKDSLPKLRPGDRIRVTGKLKPPRPPRNP 147
>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional.
Length = 854
Score = 29.7 bits (67), Expect = 6.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 313 CTNCSTNHCFSLVHNRSHFTDKQLVRL 339
N S F L+ NRS F D+ L+ L
Sbjct: 19 LENFSQEDVFELIENRSDFYDQLLIHL 45
>gnl|CDD|222164 pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain. This
family contains proteins with N-acetyltransferase
functions.
Length = 144
Score = 28.4 bits (64), Expect = 7.0
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Query: 558 RQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQS-ATDPLSGKIDVSILTTGV 616
+ L R E +R+ + D+D L R ++ A D + + L
Sbjct: 5 KNLRRKRRRLEELGGVRFEVARDPADLDALLDLFRAQWRRRGAPDLFADPWVRAFLRDLA 64
Query: 617 SSAARQRQLELTAA 630
+ A + L L
Sbjct: 65 ARLAARGALRLYVL 78
>gnl|CDD|146097 pfam03290, Peptidase_C57, Vaccinia virus I7 processing peptidase.
Length = 423
Score = 29.3 bits (66), Expect = 7.5
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 483 LSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE 522
+ +F+L FL P E+FDA +A+H+ L+D I +++
Sbjct: 192 IGQFNLNFLNGTPIHEKFDAFVAKHMLSYKLKDRIKNSKK 231
>gnl|CDD|235101 PRK03059, PRK03059, PII uridylyl-transferase; Provisional.
Length = 856
Score = 29.5 bits (67), Expect = 8.4
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 26/62 (41%)
Query: 201 AKFDSQLCQ--------QLVCYPQEVIPILDMGVNEYF--------------FERHPAAV 238
AK +QL +L + ++ NE F FERHP A+
Sbjct: 294 AKAVTQLNTILLQNIEARLFPSTSGITRVI----NERFVEKQGMLEIASDDLFERHPHAI 349
Query: 239 LE 240
LE
Sbjct: 350 LE 351
>gnl|CDD|224250 COG1331, COG1331, Highly conserved protein containing a thioredoxin
domain [Posttranslational modification, protein
turnover, chaperones].
Length = 667
Score = 29.3 bits (66), Expect = 9.6
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Query: 582 QDVDEAWRLHREALKQSATDPLS-----------GKIDVSILTTGVSSAARQ 622
+ + E WR RE L QSA L ++D +L + AR
Sbjct: 144 EAIRETWREDREELLQSAERVLEALEGLARPSAGEELDEEVLDRAAEALARS 195
>gnl|CDD|185592 PTZ00389, PTZ00389, 40S ribosomal protein S7; Provisional.
Length = 184
Score = 28.4 bits (64), Expect = 9.7
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 20/76 (26%)
Query: 39 LQVNPRMRSVKSVYKTHID-----------VVHFRKIDATRLYK--QDEKEHKFPPERVE 85
L+ PR R++ +V++ ++ R +D ++L K D K+ K E+++
Sbjct: 104 LKTRPRSRTLTAVHEAILEDLVYPSEIVGKRTRVR-VDGSKLLKVFLDPKDRKNVEEKLD 162
Query: 86 LLKSLSRKPDIYERLT 101
+Y++LT
Sbjct: 163 AFS------AVYKKLT 172
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.389
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,514,968
Number of extensions: 3627673
Number of successful extensions: 3648
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3625
Number of HSP's successfully gapped: 63
Length of query: 720
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 616
Effective length of database: 6,324,786
Effective search space: 3896068176
Effective search space used: 3896068176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.5 bits)