RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17703
(720 letters)
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 445 bits (1146), Expect = e-149
Identities = 122/270 (45%), Positives = 173/270 (64%), Gaps = 16/270 (5%)
Query: 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGA 404
+I+IL+ GDPGT+KSQ+L ++ + PR+ YT+GKGS+A GLTA + ++ T + L+ GA
Sbjct: 327 DIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGA 386
Query: 405 LVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDS 464
LVLAD G+ IDE DKM D R +HE MEQQT+SIAKAGI+ +LNAR +++AA NP
Sbjct: 387 LVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFG 446
Query: 465 QWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARH-------------LDIT 511
++ + + + DNI LP T+LSRFDLIF+L D EQ D LA + +DI
Sbjct: 447 RYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDID 505
Query: 512 VLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGA--GRGRISAYPRQLESLIRLSEA 569
LR YIAYA+++++P ++ EA + +V+MRK + I PRQLE+LIR+SEA
Sbjct: 506 TLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEA 565
Query: 570 HAKMRYSETVEVQDVDEAWRLHREALKQSA 599
+AKM V +D + A + R L+
Sbjct: 566 YAKMALKAEVTREDAERAINIMRLFLESVG 595
Score = 173 bits (442), Expect = 1e-46
Identities = 35/173 (20%), Positives = 78/173 (45%), Gaps = 6/173 (3%)
Query: 180 RRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVL 239
RI ++ + L + + + F+ L +++ + ++PIL+ + ++ + P
Sbjct: 26 ERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLDPTYQR 85
Query: 240 EHQ-IQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYST 298
+ + + VR + LR + DI +LITI+G++++ + + + +A ++ I +
Sbjct: 86 DIEKVHVRIVGIPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQ 145
Query: 299 TVEIDRGR-----IHEPTLCTNCSTNHCFSLVHNRSHFTDKQLVRLQETPAEI 346
E + PT+C C F L+ ++ D Q +QE P E+
Sbjct: 146 EFEWPEDEEMPEVLEMPTICPKCGKPGQFRLIPEKTKLIDWQKAVIQERPEEV 198
Score = 159 bits (405), Expect = 1e-41
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 8/133 (6%)
Query: 1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVH 60
+P+GQ P + + +DLVDS +PGDRV VTGI Q +P R ++V+ ++ V
Sbjct: 198 VPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILD--IKQDSPVKRGSRAVFDIYMKVSS 255
Query: 61 FRKIDATRLYKQDEKEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIML 120
+ E E + +K L++ P I +R+ S+I PSIYG+ ++K+ + L
Sbjct: 256 IEVSQ------KVLDEVIISEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELKEALAL 309
Query: 121 QMFGGTKKTFDET 133
+FGG K ++T
Sbjct: 310 ALFGGVPKVLEDT 322
Score = 150 bits (380), Expect = 2e-38
Identities = 38/65 (58%), Positives = 48/65 (73%)
Query: 655 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC 714
GALVLAD G+ IDE DKM D R +HE MEQQT+SIAKAGI+ +LNAR +++AA NP
Sbjct: 385 GALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPK 444
Query: 715 DSQWN 719
++
Sbjct: 445 FGRYI 449
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family;
helicase, MCM homolog, DNA replication, ATP-binding,
DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Length = 506
Score = 394 bits (1015), Expect = e-130
Identities = 92/275 (33%), Positives = 130/275 (47%), Gaps = 16/275 (5%)
Query: 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGA 404
+++LL G P L + L PR Y + + LTA + +D L+ GA
Sbjct: 239 RLHVLLAGYPVVCSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKEDRG---WALRAGA 295
Query: 405 LVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDS 464
VLAD G+ +D + + R L E M++ T+++ LNAR ++LAA NP
Sbjct: 296 AVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIA----LNARCAVLAAINP--G 349
Query: 465 QWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARH-LDITVLRDYIAYAQ-E 522
+ S I I L LS FDLI L T+LR Y+ YA E
Sbjct: 350 EQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIRE 409
Query: 523 HLSPTLSEEASQRLIQTYVDMRK-----LGAGRGRISAYPRQLESLIRLSEAHAKMRYSE 577
H +P L+EEA +RL Y R+ LG G + RQLES+ RL++AHA+MR S+
Sbjct: 410 HPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSD 469
Query: 578 TVEVQDVDEAWRLHREALKQSATDPLSGKIDVSIL 612
VE +DVD A L L+ + P +I +S L
Sbjct: 470 DVEPEDVDIAAELVDWYLETAMQIPGGDEIRISSL 504
Score = 118 bits (298), Expect = 2e-28
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 655 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP 713
GA VLAD G+ +D + + R L E M++ T+++ LNAR ++LAA NP
Sbjct: 294 GAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIA----LNARCAVLAAINP 348
Score = 101 bits (252), Expect = 1e-22
Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 32/135 (23%)
Query: 1 MPAGQTPHSVVLFTYNDLV------DSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKT 54
+ + ++ T ++LV + PG RV + GI R+
Sbjct: 128 VRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVRS-----------------A 170
Query: 55 HIDVVHFRKIDATRLYKQDEKEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDV 114
+D + K K E P +E + L+ D AI P + G E+V
Sbjct: 171 TLDALEVHK-------KDPIPEVHPDPAELEEFRELAD-KDPLTTFARAIAP-LPGAEEV 221
Query: 115 KKGIMLQMFGGTKKT 129
K + LQ+F K
Sbjct: 222 GKMLALQLFSCVGKN 236
Score = 45.6 bits (108), Expect = 5e-05
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 272 GMVIRTSNIIPEMRE--AFFRCIVCNYSTTVEI---DRGRIHEPTLCTNCSTN---HCFS 323
V ++ ++RE + + ++ VE + R P + H F
Sbjct: 47 ARVTSGKPVVLDLRELDSDLASWIATHARLVEPALRELVRTVAPDVEPRVRFRGLPHRFR 106
Query: 324 LVHNRSHFTDKQLVRLQETPAEI 346
V R D L+ ++ E+
Sbjct: 107 RV-ERIRPMDGALISIEGVVREV 128
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase,
hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA
binding; 2.8A {Sulfolobus solfataricus}
Length = 268
Score = 183 bits (467), Expect = 4e-53
Identities = 35/173 (20%), Positives = 78/173 (45%), Gaps = 6/173 (3%)
Query: 180 RRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVL 239
RI ++ + L + + + F+ L +++ + ++PIL+ + ++ + P
Sbjct: 32 ERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLDPTYQR 91
Query: 240 EHQ-IQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYST 298
+ + + VR + LR + DI +LITI+G++++ + + + +A ++ I +
Sbjct: 92 DIEKVHVRIVGIPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQ 151
Query: 299 TVEIDR-----GRIHEPTLCTNCSTNHCFSLVHNRSHFTDKQLVRLQETPAEI 346
E + PT+C C F L+ ++ D Q +QE P E+
Sbjct: 152 EFEWPEDEEMPEVLEMPTICPKCGKPGQFRLIPEKTKLIDWQKAVIQERPEEV 204
Score = 91.6 bits (228), Expect = 1e-20
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVH 60
+P+GQ P + + +DLVDS +PGDRV VTGI +P R ++V+ ++ V
Sbjct: 204 VPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQ--DSPVKRGSRAVFDIYMKVSS 261
Query: 61 FRKID 65
Sbjct: 262 IEVSQ 266
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
{Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Length = 279
Score = 176 bits (448), Expect = 2e-50
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 6/154 (3%)
Query: 193 LNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLEHQIQVRPFNAKK 252
+ V+ L FD L L+ P +VI + R + +R
Sbjct: 44 IEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNIDRLRK-----NVDLNIRFSGISN 98
Query: 253 TRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTL 312
LR L + I + + ++G+V +T I P + +A F C C V I EP+L
Sbjct: 99 VIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQSTNMITEPSL 158
Query: 313 CTNCSTNHCFSLVHNRSHFTDKQLVRLQETPAEI 346
C+ C F L+ + S F D Q ++LQE +
Sbjct: 159 CSECG-GRSFRLLQDESEFLDTQTLKLQEPLENL 191
Score = 105 bits (264), Expect = 2e-25
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 13/100 (13%)
Query: 1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVH 60
+ G+ P + + +DLVD++ PGD V VTG R V + R ++ +Y + + +
Sbjct: 191 LSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVRDERTKRFKNF--IYGNYTEFLE 248
Query: 61 FRKIDATRLYKQDEKEHKFPPERVELLKSLSRKPDIYERL 100
Q+ +E + E E +K L+ P+IYE++
Sbjct: 249 -----------QEFEELQISEEDEEKIKELAGDPNIYEKI 277
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 75.3 bits (184), Expect = 4e-14
Identities = 78/518 (15%), Positives = 157/518 (30%), Gaps = 147/518 (28%)
Query: 223 DMGVNEYFFERHPAAVLEHQIQ--VRPFNAKKTRN-LRH-LNPEDIDQLITINGMVIRTS 278
+ G ++Y ++ +L V F+ K ++ + L+ E+ID +I V T
Sbjct: 10 ETGEHQYQYKD----ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 279 NII-------PEMREAFFRCIV-CNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRSH 330
+ EM + F ++ NY + + +P++ T ++N +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR-MYIEQRDRLYNDNQ 124
Query: 331 -FTDKQLVR----------LQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKG 379
F + R L E N+L+ G G+ K+
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-------------------- 164
Query: 380 SSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFD------KMSDTTRSILHEVM 433
+ V V C +F K ++ ++L
Sbjct: 165 -------------------WV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL---E 200
Query: 434 EQQTLSIAKAGIICQLNARTSILAAA-NPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLL 492
Q L I +R+ + S + ++ + + L L+
Sbjct: 201 MLQKLLYQ---IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--------LV 249
Query: 493 LDPQSEQFDARLARHLDI--TVL---RD-----------YIAYAQEHLSPTLSEEASQRL 536
L +A+ ++ +L R + +H S TL+ + + L
Sbjct: 250 LL---NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 537 IQTYVDMRKLGAGRGRISAYPRQLE--SLIRLSEAHAKMRYSETVEVQDVDEAWRLHREA 594
+ Y+D R PR++ + RLS +R D W +
Sbjct: 307 LLKYLDC--------RPQDLPREVLTTNPRRLSIIAESIR--------DGLATW----DN 346
Query: 595 LKQSATDPLSGKIDVSILTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLK 654
K D L+ I+ S+ E +L + PS + L +
Sbjct: 347 WKHVNCDKLTTIIESSL--------NVLEPAEYRKMFDRLSVFP-PSAHIPTILLSL--- 394
Query: 655 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSI 692
+ + +K+ S++ + ++ T+SI
Sbjct: 395 --IWFDVIKSDVMVVVNKLHK--YSLVEKQPKESTISI 428
Score = 64.5 bits (156), Expect = 9e-11
Identities = 96/658 (14%), Positives = 197/658 (29%), Gaps = 190/658 (28%)
Query: 60 HFRKIDATRLYKQDEKEHKF----PPERVELLKSLSRKPDI--YER--LTSAICPSIYGY 111
H +D ++ E ++++ + + K D+ + L+ I
Sbjct: 3 HHHHMD----FETGEHQYQYKDILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMS 57
Query: 112 EDVKKGIMLQMFGGTKKTFDETISDRMSEID------LASPLNYGT--PSSIGSL-RTPR 162
+D G + +F +E + + E+ L SP+ PS + + R
Sbjct: 58 KDAVSGTLR-LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 163 SGIQGTPIRLRPDIRTDRRIRQIFSLE------DPVLNVNLAH---------LAKFDSQL 207
+ + R++ L P NV + +A
Sbjct: 117 DRLYNDNQVFAKYNVS--RLQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWVAL----- 168
Query: 208 CQQLVCYPQEVIPILDMGVNEYFF------ERHPAAVLEHQ----IQVRP---FNAKKTR 254
VC +V +D + F P VLE Q+ P + +
Sbjct: 169 ---DVCLSYKVQCKMDFKI----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 255 NLRHLNPEDIDQLITI--------NGMVI----RTSNIIPEMREAF-FRC--IVCNYSTT 299
N++ L I + N +++ + + AF C ++ TT
Sbjct: 222 NIK-LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW----NAFNLSCKILL----TT 272
Query: 300 VEIDRGRIHEPTLCTNCSTNHCFSLVHNRSHFTDKQLVRL---------QETPAE---IN 347
R + T + +T SL H+ T ++ L Q+ P E N
Sbjct: 273 ------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 348 ILLCGDPGTSKSQLLSYVYDLVPRSQY----TSGKGSSAVGLTAYITKDPETRQM----- 398
S D + K ++ + + + + E R+M
Sbjct: 327 PRRLSIIAESIR-------DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 399 VLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNART-SI-- 455
V A + + + + FD + ++++ + + +L + Q T SI
Sbjct: 380 VFPPSAHI--PTILLSLIWFDVIKSDVMVVVNK-LHKYSL------VEKQPKESTISIPS 430
Query: 456 --LAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVL 513
L ++++ ++I+D+ +P FD L+ + F
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIP----KTFDSDDLIPPYLDQYF------------- 473
Query: 514 RDYIAYAQEHLSPTLSEEASQRLIQTYVDMR----KL--------GAG------------ 549
+I + HL E ++D R K+ +G
Sbjct: 474 YSHIGH---HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 550 RGRIS----AYPRQLESLIRLSEAHA----KMRYSETVEVQDVDEAWRLHREALKQSA 599
+ I Y R + +++ +Y++ + + + E + EA KQ
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 39.8 bits (92), Expect = 0.003
Identities = 63/460 (13%), Positives = 124/460 (26%), Gaps = 137/460 (29%)
Query: 21 SIQPGDRVTVTGIYRAVPLQVNPRMRSV-KSV--------YKTH---------IDVVHFR 62
++P V + G + K+ YK +++ +
Sbjct: 146 ELRPAKNVLIDG------------VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 63 KIDAT-----RLYKQDEKEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGY-----E 112
+ +L Q + + +K R I L + Y
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL--RIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 113 DVKKGIMLQMFGGTKK----TFDETISDRMS-----EIDLASPLNYGTPS---------- 153
+V+ F + K T + ++D +S I L TP
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 154 --SIGSLRTPRSGIQGTPI-------RLRPDIRTDRRIRQIFS--LEDPVLNVNLAHLAK 202
L PR + P +R + T + + L ++ +L L
Sbjct: 312 DCRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT-IIESSLNVLEP 368
Query: 203 FDSQLC-QQLVCYPQEV-IP------------------ILDMGVNEYFFERHPA------ 236
+ + +L +P IP +++ E+ P
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 237 --------------AVLEHQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIP 282
L H+ V +N KT + L P +DQ + + NI
Sbjct: 429 PSIYLELKVKLENEYAL-HRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHHLKNIEH 486
Query: 283 EMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCS--TNHCFSLVHNRSHFTDK-----Q 335
R FR + ++ +++ H+ T N L + + D +
Sbjct: 487 PERMTLFRMVFLDFRF---LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 336 LVRLQET---PAEINILLCGDPGTSKSQLL-----SYVYD 367
LV E N++ T ++ +++
Sbjct: 544 LVNAILDFLPKIEENLICS--KYTDLLRIALMAEDEAIFE 581
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 65.2 bits (159), Expect = 2e-11
Identities = 47/293 (16%), Positives = 88/293 (30%), Gaps = 60/293 (20%)
Query: 347 NILLCGDPGTSKSQLLSYVYDLVPR------SQYTSGKGSSAVGLTAYITKDPETRQM-- 398
+L+ GD GT KS + + L+P +S ++ + +
Sbjct: 47 GVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPV 106
Query: 399 ---------------------------VLQTGALVLADSGVCCIDEFDKMSDTTRSILHE 431
+ G L A+ G IDE + + D +L +
Sbjct: 107 VDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLD 166
Query: 432 VMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL--- 488
V + + + G+ + AR ++ + NP + ++D L +LS D+
Sbjct: 167 VAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDL--RPQLLDRFGLSVEVLSPRDVETR 224
Query: 489 -----IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSP-TLSEEASQRLIQTYVD 542
D + F +R+ I A+E L A +
Sbjct: 225 VEVIRRRDTYDADPKAFLEEWRP--KDMDIRNQILEARERLPKVEAPNTALYDCAALCIA 282
Query: 543 MRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL---HR 592
+ G R L+R + A A + + V + + HR
Sbjct: 283 LGSDGL-R----GELT----LLRSARALAALEGATAVGRDHLKRVATMALSHR 326
Score = 42.1 bits (99), Expect = 4e-04
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 655 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC 714
G L A+ G IDE + + D +L +V + + + G+ + AR ++ + NP
Sbjct: 138 GLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPE 197
Query: 715 D 715
+
Sbjct: 198 E 198
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 5e-07
Identities = 93/633 (14%), Positives = 173/633 (27%), Gaps = 230/633 (36%)
Query: 152 PSSI--GSLRT----PRS-GIQGTPIRLR-------PDIRTDRRIRQIFSLED-PVLNVN 196
P ++ GSL P + + +L+ P+ T+ F+ +D P
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIAS--QLQEQFNKILPE-PTEG-----FAADDEPTTPAE 59
Query: 197 LAHLAKF---DSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLE----HQIQVRPFN 249
L + KF S L + + +L++ + E FE LE H +
Sbjct: 60 L--VGKFLGYVSSLVEPSKVGQFD--QVLNLCLTE--FEN---CYLEGNDIHAL------ 104
Query: 250 AKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFR-CIVCNYSTTVEIDRGRIH 308
L ++ D + +I+ + I+ +
Sbjct: 105 ------AAKL-LQENDTTLVKTKELIK----------NYITARIMAKRPFD------KKS 141
Query: 309 EPTLCTNCSTNHCFSLV-------HNRSHFTDKQLVRLQETPAEI---------NIL--L 350
L + LV + +F ++L L +T + L L
Sbjct: 142 NSALFRAVGEGN-AQLVAIFGGQGNTDDYF--EELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 351 CGDPGTSKSQLLSYVYDLV---------PRSQYTSGKGSSAV-----GLTA---YIT--- 390
++ + +++ P Y S + G+ Y+
Sbjct: 199 IRTT-LDAEKVFTQGLNILEWLENPSNTPDKDYLL---SIPISCPLIGVIQLAHYVVTAK 254
Query: 391 ---KDPETRQMVLQ--TG-------ALVLA--DSGVCCIDEFDKMSDTTRSILHEVMEQQ 436
P + L+ TG A+ +A DS + F ++L
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW----ESFFVSVRKAITVL------- 303
Query: 437 TLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQ 496
I G+ C + L + DS N P +LS
Sbjct: 304 -FFI---GVRCYEAYPNTSLPPSILEDSLENNEGV-------PSPMLS------------ 340
Query: 497 SEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLI---QTYVDMRKLGAGRGRI 553
+L ++DY+ HL ++ L+ + V +
Sbjct: 341 --------ISNLTQEQVQDYVNKTNSHLPA--GKQVEISLVNGAKNLV-----------V 379
Query: 554 SAYPRQLESL-IRLSEAHAK------------------MRY---------------SETV 579
S P+ L L + L +A A R+ S+ +
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 580 EVQDVDEAWRLHREALKQSATDPLSGK----IDVSILTTGVSSAARQR-QLELTAALKKL 634
V + + ++ D G + SI V R + E T K
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
Query: 635 -VILLGPSVTVTQQKLIMDLK---GA-LVLADS 662
++ GP L K G +++A +
Sbjct: 500 HILDFGPGGASGLGVLTHRNKDGTGVRVIVAGT 532
Score = 45.0 bits (106), Expect = 9e-05
Identities = 77/454 (16%), Positives = 126/454 (27%), Gaps = 181/454 (39%)
Query: 310 PTLCTNCSTNHCFSLVHNRSHFTDKQLVR---LQETPAEINILLCGDPGTSKSQL----L 362
P ++ S H LV S F QL + + P D T+ ++L L
Sbjct: 8 PLTLSHGSLEHVL-LVPTASFFIASQL-QEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 363 SYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS 422
YV LV S+ VL C+ EF+
Sbjct: 66 GYVSSLVEPSKVGQ-------------------FDQVLNL-----------CLTEFE--- 92
Query: 423 DTTRSIL-----H----EVMEQQTLSIAKAGIICQ--LNARTSILAAANPCDSQWNTSKT 471
L H +++++ ++ K + + + AR A + + S
Sbjct: 93 ---NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR----IMAKRPFDKKSNSA- 144
Query: 472 IIDNIRLPHTLL-------SRFDLIF----LLLDPQSEQFDARLARHL-DI--TVLRDYI 517
L ++ IF D E L R L ++ D I
Sbjct: 145 ----------LFRAVGEGNAQLVAIFGGQGNTDDYFEE-----L-RDLYQTYHVLVGDLI 188
Query: 518 AYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSE 577
++ E L LI+T +D K+ + + L
Sbjct: 189 KFSAETL---------SELIRTTLDAEKV---------FTQGL----------------- 213
Query: 578 TVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTT--------GVSSAAR----QRQL 625
++ W L+ + P D L + GV A + L
Sbjct: 214 -----NI-LEW------LENPSNTP-----DKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 626 ELT-AALKKLVILLGPSVTVTQQKLIMDLKGALVLA--DSGVCCIDEFDKMSDTTRSILH 682
T L+ L G T Q L+ A+ +A DS + F ++L
Sbjct: 257 GFTPGELRS--YLKG--ATGHSQGLVT----AVAIAETDSW----ESFFVSVRKAITVL- 303
Query: 683 EVMEQQTLSIAKAGIICQLNARTSILAAANPCDS 716
I G+ C + L + DS
Sbjct: 304 -------FFI---GVRCYEAYPNTSLPPSILEDS 327
Score = 37.0 bits (85), Expect = 0.025
Identities = 58/325 (17%), Positives = 96/325 (29%), Gaps = 123/325 (37%)
Query: 216 QEVIPILDMGVNEYFFERHPAAVLEHQIQVRPFNAKKTRNLRHLNPEDIDQ-LITINGMV 274
QE MG++ Y + AA +++ D G
Sbjct: 1627 QEQ----GMGMDLY--KTSKAA----------------QDVW----NRADNHFKDTYGFS 1660
Query: 275 IRTSNII---PEMREAFF-----RCIVCNYST-TVE--IDRGRIHEPTL--CTNCSTNHC 321
I +I+ P F + I NYS E +D E ST++
Sbjct: 1661 I--LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 322 FS-----LVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDL-----VPR 371
F L + + FT Q PA + L K+ DL +P
Sbjct: 1719 FRSEKGLL--SATQFT-------Q--PA---LTL-----MEKAAF----EDLKSKGLIPA 1755
Query: 372 SQYTSGK--G--------------SSAVGLTAYITKDPETR----QMVLQTGALVLADSG 411
+G G S V + Y R Q+ + L ++ G
Sbjct: 1756 DATFAGHSLGEYAALASLADVMSIESLVEVVFY-------RGMTMQVAVPRDELGRSNYG 1808
Query: 412 VCCIDEFDKMSDT-TRSILHEVMEQ---QT---LSIA---KAG--IIC--QLNARTSILA 457
+ I+ +++ + ++ L V+E+ +T + I + L A L
Sbjct: 1809 MIAINP-GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA----LD 1863
Query: 458 AANPCDSQWNTSKTIIDNIRLPHTL 482
+ K ID I L +L
Sbjct: 1864 TVTNVLNFIKLQK--IDIIELQKSL 1886
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 44.7 bits (106), Expect = 8e-05
Identities = 40/224 (17%), Positives = 82/224 (36%), Gaps = 32/224 (14%)
Query: 403 GALVLADSGVCCIDEFDKMSDTTR----SILHEV---MEQQ-----TLSIAKAGIICQLN 450
G + A GV IDE +S + + + E + Q + + C
Sbjct: 195 GMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDF- 253
Query: 451 ARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDI 510
++AA N +D + L SR + ++ D R +
Sbjct: 254 ---VLVAAGNL---------DTVDKM--HPALRSRIRGYGYEVYMRTTMPDTIENRRKLV 299
Query: 511 TVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH 570
+ + ++ P ++EA + +++ K +G ++ R L ++R +
Sbjct: 300 QFVAQEV--KRDGKIPHFTKEAVEEIVREAQ---KRAGRKGHLTLRLRDLGGIVRAAGDI 354
Query: 571 AKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTT 614
A + + VE +DV EA ++ + KQ A + K + ++ T
Sbjct: 355 AVKKGKKYVEREDVIEAVKMAKPLEKQLADWYIERKKEYQVIKT 398
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.49
Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 34/98 (34%)
Query: 494 DPQS-----EQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGA 548
+P+S E+ RL D + E E+A + L +
Sbjct: 83 EPESIRKWREEQRKRLQE-------LDAASKVMEQ---EWREKAKKDLEEWNQR------ 126
Query: 549 GRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDE 586
Q+E + R ++ Q D
Sbjct: 127 -------QSEQVE------KNKINNRIADKAFYQQPDA 151
Score = 29.7 bits (66), Expect = 2.4
Identities = 13/81 (16%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 553 ISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPL-------SG 605
I+ R + E+ K R + +Q++D A ++ + ++ A L S
Sbjct: 74 IAQADRLTQE----PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129
Query: 606 KIDVSILTTGVSSAARQRQLE 626
+++ + + ++ A +Q +
Sbjct: 130 QVEKNKINNRIADKAFYQQPD 150
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 32.3 bits (73), Expect = 0.69
Identities = 30/180 (16%), Positives = 55/180 (30%), Gaps = 40/180 (22%)
Query: 411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSK 470
GV +DE + + LH +E I ++ A+N + ++
Sbjct: 297 GVLFVDEVHMLDIECFTYLHRALESSIAPI--------------VIFASNRGNCVIRGTE 342
Query: 471 TIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSE 530
I +P LL R +I + ++ + +SE
Sbjct: 343 DITSPHGIPLDLLDRV-MIIRTMLYTPQEMKQIIKIRAQT-------------EGINISE 388
Query: 531 EASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL 590
EA L G R L+ + AK+ +++E + V+E L
Sbjct: 389 EALNHL------------GEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 1.3
Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 28/131 (21%)
Query: 406 VLADSGVCCI--DEFDKMSDTTRSILHEVMEQQTL-----SIAKA-GIICQLNARTSILA 457
+L SG+ I + F+ + + ++ EV+ ++ L S A Q + I
Sbjct: 898 ILEHSGIRLIEPELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDI-- 955
Query: 458 AANPCDSQWNTSKTIIDNIRLPHTLLSRFD-LI-------FLLLDPQSEQFDARLARHLD 509
S ++ L RFD L+ + + ++ + +D
Sbjct: 956 --FEIPETGEYSVKLLKGATLYIPKALRFDRLVAGQIPTGW---NAKTYGISDDIISQVD 1010
Query: 510 ITVLRDYIAYA 520
+
Sbjct: 1011 -----PITLFV 1016
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold,
oxidoreductase; 2.20A {Caenorhabditis elegans}
Length = 460
Score = 31.1 bits (71), Expect = 1.4
Identities = 12/84 (14%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 69 LYKQDEKEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKK 128
Y + + E ++++ +S+ ++ + +DV ++ +
Sbjct: 321 KYDDKTQRKENDTEMEQIIRRVSQNAKSNIQIIND--------QDVINFMLYPTVNEGYR 372
Query: 129 TFDETISDRMSEIDLASPLNYGTP 152
+E + S ID+ L +G P
Sbjct: 373 CIEEGVISNESLIDIMFILGFGWP 396
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 30.7 bits (69), Expect = 1.9
Identities = 20/113 (17%), Positives = 34/113 (30%), Gaps = 26/113 (23%)
Query: 478 LPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLI 537
+P LL R LI + L + +E + +SE+A L
Sbjct: 243 IPIDLLDRL-LIVSTTPYSEKDTKQILRIRCE-----------EEDVE--MSEDAYTVLT 288
Query: 538 QTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL 590
+ + R LI + + R V+V D+ + L
Sbjct: 289 RI--------GLETSL----RYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 30.3 bits (69), Expect = 2.4
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 70 YKQDEKEHKFP-PERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKK 128
Y D+K P PE + ++ + + +D+ + + +
Sbjct: 586 YLYDDKRKAKPDPELKKYIEKARSISGV----KLDPKLANLSEKDIIEMTFFPVVNEACR 641
Query: 129 TFDETISDRMSEIDLASPLNYGTP 152
F E I+ + +++D+A + G P
Sbjct: 642 VFAEGIAVKAADLDIAGIMGMGFP 665
>3ld2_A SMU.2055, putative acetyltransferase; HET: COA; 2.50A
{Streptococcus mutans}
Length = 197
Score = 29.4 bits (66), Expect = 2.8
Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 8/92 (8%)
Query: 224 MGVNEYFFERHPAAVLEHQIQVRPFNAKKTR----NLRHLNPEDIDQLITINGMVIRTSN 279
MG + + V ++ + + DI+Q++ + N
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMKISPMLLSDIEQVVELENKTWSEQN 60
Query: 280 II----PEMREAFFRCIVCNYSTTVEIDRGRI 307
++ + N V + +I
Sbjct: 61 TPVPLPVASKDQIIQKFESNTHFLVAKIKDKI 92
>1dlc_A Delta-endotoxin CRYIIIA; 2.50A {Bacillus thuringiensis} SCOP:
b.18.1.3 b.77.2.1 f.1.3.1
Length = 584
Score = 29.8 bits (66), Expect = 3.4
Identities = 20/145 (13%), Positives = 40/145 (27%), Gaps = 25/145 (17%)
Query: 416 DEFDKMSDTTRSILHEVMEQQTLSIAKA---GIICQLNARTSILAAANPCDSQWNTSKTI 472
D + + +++ + + + A A G+ + S L++ W +
Sbjct: 44 DPWKAFMEQVEALMDQKIADYAKNKALAELQGLQNNVEDYVSALSS-------WQKNPVS 96
Query: 473 IDNIRLPHTLLSRFDLIFLLLDPQSEQFDAR-----------LARHLDITVLRDYIAYAQ 521
N + F F A + + +L+D Y +
Sbjct: 97 SRNPHSQGRIRELFSQAESHFRNSMPSFAISGYEVLFLTTYAQAANTHLFLLKDAQIYGE 156
Query: 522 E-HLSPTLSEEASQRL---IQTYVD 542
E E +R Q Y D
Sbjct: 157 EWGYEKEDIAEFYKRQLKLTQEYTD 181
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_6
Length = 81
Score = 26.6 bits (59), Expect = 6.8
Identities = 8/44 (18%), Positives = 12/44 (27%), Gaps = 5/44 (11%)
Query: 280 IIPEMREAFF--RCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHC 321
+I F +C C + +C CS C
Sbjct: 22 LIQAPNSYFMDVKCAQCQNIQMI---FSNAQSTIICEKCSAILC 62
>3llb_A Uncharacterized protein; protein PA3983, unknown function,
structural genomics, PSI2, MCSG, protein structure
initiative; 1.80A {Pseudomonas aeruginosa}
Length = 83
Score = 26.8 bits (60), Expect = 7.8
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 13/55 (23%)
Query: 258 HLNPEDIDQLITINGMVIRTSNIIPEMREAF----FRCIVCNYSTTVEIDRGRIH 308
+ E+ D T+ G+V+ +P+ E FR V + D R+H
Sbjct: 29 EFSDEEFD---TVGGLVMSAFGHLPKRNEVVELGEFRFRV------LNADSRRVH 74
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus
influenzae RD KW20, structural genomics, PSI-2; HET:
MSE; 1.45A {Haemophilus influenzae} PDB: 2o1r_A*
Length = 81
Score = 26.4 bits (59), Expect = 7.9
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
Query: 255 NLRHLNPE-----DIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYS-TTVEIDRGRIH 308
NLR LN D + T NG+++ IP+ + T +E+ I
Sbjct: 18 NLRDLNKMFNWELDTEDARTFNGLILEHLEEIPDEGTIC---EIDGLLITILEVGDNMIK 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.389
Gapped
Lambda K H
0.267 0.0583 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,842,031
Number of extensions: 671899
Number of successful extensions: 1912
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1873
Number of HSP's successfully gapped: 40
Length of query: 720
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 620
Effective length of database: 3,909,693
Effective search space: 2424009660
Effective search space used: 2424009660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.6 bits)