RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17703
(720 letters)
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54)
N-terminal domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 239
Score = 122 bits (307), Expect = 4e-32
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 15/170 (8%)
Query: 193 LNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLEHQIQVRPFNAKK 252
+ V+ L FD L L+ P +VI + R + +R
Sbjct: 36 IEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNIDRLRK-----NVDLNIRFSGISN 90
Query: 253 TRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTL 312
LR L + I + + ++G+V +T I P + +A F C C V I EP+L
Sbjct: 91 VIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQSTNMITEPSL 150
Query: 313 CTNCSTNHCFSLVHNRSHFTDKQLVRLQE---------TPAEINILLCGD 353
C+ C F L+ + S F D Q ++LQE P +I ++L D
Sbjct: 151 CSECG-GRSFRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDD 199
Score = 69.3 bits (169), Expect = 9e-14
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVV 59
+ G+ P + + +DLVD++ PGD V VTG R V + R + +Y + + +
Sbjct: 183 LSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVRDERTKRFK--NFIYGNYTEFL 239
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 73.8 bits (180), Expect = 1e-14
Identities = 47/301 (15%), Positives = 86/301 (28%), Gaps = 76/301 (25%)
Query: 347 NILLCGDPGTSKSQLLSYVYDLVP-----------------------------------R 371
+L+ GD GT KS + + L+P
Sbjct: 30 GVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPV 89
Query: 372 SQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHE 431
G V I + + + G L A+ G IDE + + D +L +
Sbjct: 90 VDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLD 149
Query: 432 VMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFL 491
V + + + G+ + AR ++ + NP + L LL RF L
Sbjct: 150 VAQSGENVVERDGLSIRHPARFVLVGSGNPEE------------GDLRPQLLDRFGLSVE 197
Query: 492 LLDPQSEQFDARLA-----------------RHLDITVLRDYIAYAQEHLSPTLSEEASQ 534
+L P+ + + R D+ + + + A
Sbjct: 198 VLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALY 257
Query: 535 RLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL---H 591
+ + G R +L+R + A A + + V + + H
Sbjct: 258 DCAALCIALGSDG---------LRGELTLLRSARALAALEGATAVGRDHLKRVATMALSH 308
Query: 592 R 592
R
Sbjct: 309 R 309
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 38.3 bits (89), Expect = 0.002
Identities = 42/207 (20%), Positives = 72/207 (34%), Gaps = 26/207 (12%)
Query: 343 PAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYIT-------KDPET 395
AE +L+ G+ G K + ++ L RS+ + A K T
Sbjct: 21 CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFT 80
Query: 396 RQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSI 455
+ + G LAD G +DE ++S ++ L V+E ++N R I
Sbjct: 81 GAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVR--I 138
Query: 456 LAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRD 515
LAA N K ++ + L R +I + + P E R DI L +
Sbjct: 139 LAATN------RNIKELVKEGKFREDLYYRLGVIEIEIPPLRE-------RKEDIIPLAN 185
Query: 516 YIAYAQEHLS----PTLSEEASQRLIQ 538
+ ++ A + L+
Sbjct: 186 HFLKKFSRKYAKEVEGFTKSAQELLLS 212
Score = 29.1 bits (65), Expect = 1.7
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 652 DLKGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAA 711
+G LAD G +DE ++S ++ L V+E ++N R ILAA
Sbjct: 85 SKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVR--ILAAT 142
Query: 712 N 712
N
Sbjct: 143 N 143
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 35.6 bits (81), Expect = 0.019
Identities = 40/260 (15%), Positives = 75/260 (28%), Gaps = 35/260 (13%)
Query: 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALV 406
NIL+ G G K+++ + L D R + G +
Sbjct: 51 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAI 110
Query: 407 LADS--GVCCIDEFDKMSDTTRSILHEVMEQQTLSI-----------AKAGIICQLNART 453
A G+ IDE DK+ +V + K G++
Sbjct: 111 DAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMV----KTD 166
Query: 454 SILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVL 513
IL A + + + L L R + L + F+ L
Sbjct: 167 HILFIA-------SGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTE 219
Query: 514 RDYIAYAQEHLSPTLSEEASQRLIQTYVD----MRKLGAGRGRISAYPRQLESLIR--LS 567
+ A E ++ + +A +++ + +GA R +E L+
Sbjct: 220 QYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLH-----TVMERLMDKISF 274
Query: 568 EAHAKMRYSETVEVQDVDEA 587
A + ++ V +A
Sbjct: 275 SASDMNGQTVNIDAAYVADA 294
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 32.4 bits (72), Expect = 0.18
Identities = 17/255 (6%), Positives = 59/255 (23%), Gaps = 23/255 (9%)
Query: 342 TPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQ 401
+ + G G K+ L + V + G + A+ + T
Sbjct: 43 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTI----- 97
Query: 402 TGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQ----TLSIAKAGIICQLNARTSILA 457
++ I + L + + + + + + + +
Sbjct: 98 --LSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDL 155
Query: 458 AANPC---DSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLR 514
+ I + + + + + + +S+ L
Sbjct: 156 YTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELY 215
Query: 515 DYIA--YAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK 572
+ + + + R+ ++++ A+
Sbjct: 216 TILEQRAELGLRDTVWEPRHLELIS-------DVYGEDKGGDGSARRAIVALKMACEMAE 268
Query: 573 MRYSETVEVQDVDEA 587
+++ V +A
Sbjct: 269 AMGRDSLSEDLVRKA 283
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 31.5 bits (70), Expect = 0.29
Identities = 41/242 (16%), Positives = 68/242 (28%), Gaps = 48/242 (19%)
Query: 347 NILLCGDPGTSKSQL-LSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGAL 405
++LL G PG K+ L ++L + TSG G A I + +L
Sbjct: 37 HLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDIL----- 91
Query: 406 VLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQ 465
IDE ++S L+ ME + I Q
Sbjct: 92 --------FIDEIHRLSRQAEEHLYPAMEDFVMDI---------------------VIGQ 122
Query: 466 WNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLS 525
++TI L RF LI P + + + +
Sbjct: 123 GPAARTIRLE-------LPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVM 175
Query: 526 PTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVD 585
++ + R R + R + L R A++ E + +
Sbjct: 176 RDARLLG----VRITEEAALEIGRRSRGT--MRVAKRLFRRVRDFAQVAGEEVITRERAL 229
Query: 586 EA 587
EA
Sbjct: 230 EA 231
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 31.5 bits (71), Expect = 0.33
Identities = 22/165 (13%), Positives = 47/165 (28%), Gaps = 16/165 (9%)
Query: 347 NILLCGDPGTSKSQLLSYV-YDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGAL 405
+++ G + K+ L+ + L + +Y + + + Y T D +
Sbjct: 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS--GYNT-DFNVFVDDIARAM- 180
Query: 406 VLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGI-ICQLNARTSILAAANPCDS 464
V ID + + + I + ++A+ NP
Sbjct: 181 --LQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTS- 237
Query: 465 QWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLD 509
D I SR + L++ + L R +
Sbjct: 238 -------NDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGE 275
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 31.2 bits (70), Expect = 0.40
Identities = 22/236 (9%), Positives = 53/236 (22%), Gaps = 42/236 (17%)
Query: 337 VRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETR 396
+ P + L G + K+ L + + +L + + +
Sbjct: 146 CMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-GGKALNVNLPLDRLNFELGVAIDQFL 204
Query: 397 QMVLQTGALVLADSG---VCCIDEFDKMS---DTTRSILHEVMEQQTLSIAKAGIICQLN 450
+ I+ D + D + + E + I
Sbjct: 205 VVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIV--- 261
Query: 451 ARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD-LIFLLLDPQSEQFDARLARHL- 508
++ +P TL +RF I + R L
Sbjct: 262 ---------------------TMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLE 300
Query: 509 ------DITVLRDYIA-YAQEHLSPTLSEEASQ--RLIQTYVDMRKLGAGRGRISA 555
I +L I + ++ + + + + ++
Sbjct: 301 KRIIQSGIALLLMLIWYRPVAEFAQSIQSRIVEWKERLDKEFSLSVYQKMKFNVAM 356
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 30.5 bits (67), Expect = 0.54
Identities = 24/243 (9%), Positives = 60/243 (24%), Gaps = 20/243 (8%)
Query: 347 NILLCGDPGTSKSQLL-SYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGAL 405
L G PGT K+ L ++ + + R + +
Sbjct: 45 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRR 104
Query: 406 VLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQ 465
S + + + V++ + ++ + D
Sbjct: 105 --GLSRDEFLALLVEHLRERDLYMFLVLDDA--------FNLAPDILSTFIRLGQEADKL 154
Query: 466 WNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL-DITVLRDYIAYAQEHL 524
++ L + ++ +F + DI + R A+
Sbjct: 155 GAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY 214
Query: 525 SPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDV 584
S + + + G R ++ S A+ + + +DV
Sbjct: 215 SEDILQMIADITGAQTPLDTNRGD--------ARLAIDILYRSAYAAQQNGRKHIAPEDV 266
Query: 585 DEA 587
++
Sbjct: 267 RKS 269
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 29.9 bits (66), Expect = 1.0
Identities = 18/227 (7%), Positives = 59/227 (25%), Gaps = 18/227 (7%)
Query: 335 QLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPE 394
Q + + +++LL G P + K+ L+ + + + K
Sbjct: 30 QQTKNSDRTPLVSVLLEGPPHSGKT-ALAAKIAEESNFPFIKICSPDKMIGFSETAKCQA 88
Query: 395 TRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTS 454
+++ + +D+ +++ D + +
Sbjct: 89 MKKIFDDAYK---SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 145
Query: 455 ILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLR 514
I+ + D ++ + + + F + + + + L + +
Sbjct: 146 IIGTTSRKD--------VLQEMEML----NAFSTTIHVPNIATG--EQLLEALELLGNFK 191
Query: 515 DYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLE 561
D + + ++M R+ + L
Sbjct: 192 DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLR 238
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 29.7 bits (65), Expect = 1.3
Identities = 14/99 (14%), Positives = 33/99 (33%)
Query: 348 ILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVL 407
+ G+ G+ K+QL + +V G S + + T PE + + Q L
Sbjct: 39 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDP 98
Query: 408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGII 446
+ S+ ++ + ++ + +
Sbjct: 99 DEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPV 137
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.4 bits (62), Expect = 1.8
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 344 AEINILLCGDPGTSKSQLLS-YVYD 367
AE+ + + G G KS L+ ++
Sbjct: 1 AEVKLAIFGRAGVGKSALVVRFLTK 25
>d1yr0a1 d.108.1.1 (A:4-166) Phosphinothricin acetyltransferase
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 163
Score = 28.2 bits (61), Expect = 2.5
Identities = 10/86 (11%), Positives = 24/86 (27%), Gaps = 8/86 (9%)
Query: 255 NLRHLNPEDIDQLITINGMVIRTSNIIPE--------MREAFFRCIVCNYSTTVEIDRGR 306
LR +D+ ++ I + + I ++ F + V I G+
Sbjct: 3 ELRDATVDDLSGIMEIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAILDGK 62
Query: 307 IHEPTLCTNCSTNHCFSLVHNRSHFT 332
+ + + S +
Sbjct: 63 VAGYASYGDWRAFDGYRHTREHSVYV 88
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 28.2 bits (61), Expect = 3.0
Identities = 22/139 (15%), Positives = 39/139 (28%), Gaps = 4/139 (2%)
Query: 348 ILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVL 407
G+ T K+QL + + G G G +I + R L+ A
Sbjct: 40 TEAFGEFRTGKTQLSHTLC----VTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 95
Query: 408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWN 467
+D T E+++ + I +L SI+A S
Sbjct: 96 NVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRG 155
Query: 468 TSKTIIDNIRLPHTLLSRF 486
+ + L +
Sbjct: 156 ELAERQQKLAQMLSRLQKI 174
>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast
(Candida albicans) [TaxId: 5476]}
Length = 227
Score = 27.9 bits (62), Expect = 3.3
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 249 NAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFR 290
N K + LR + +D+ ++++ +I+ E F+
Sbjct: 36 NNPKLKGLRPMTGKDVSTVLSLLYKYQERFDIVQLFTEEEFK 77
>d1yvoa1 d.108.1.1 (A:4-172) Hypothetical protein PA4866
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 169
Score = 27.8 bits (60), Expect = 3.3
Identities = 11/90 (12%), Positives = 22/90 (24%), Gaps = 9/90 (10%)
Query: 255 NLRHLNPEDIDQLITINGMVIRTSNII--------PEMREAFFRCIVCNYSTTVEIDR-G 305
++R D+ ++ I + + I + F Y V D G
Sbjct: 1 SIRDAGVADLPGILAIYNDAVGNTTAIWNETPVDLANRQAWFDTRARQGYPILVASDAAG 60
Query: 306 RIHEPTLCTNCSTNHCFSLVHNRSHFTDKQ 335
+ + F S +
Sbjct: 61 EVLGYASYGDWRPFEGFRGTVEHSVYVRDD 90
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 26.3 bits (58), Expect = 3.6
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 10/38 (26%)
Query: 289 FRCIVCNY--STTVEIDR----GRIHEPTLCTNCSTNH 320
F C CN+ S V++DR G I CT C
Sbjct: 24 FTCPFCNHEKSCDVKMDRARNTGVIS----CTVCLEEF 57
>d3fapb_ a.24.7.1 (B:) FKBP12-rapamycin-binding domain of
FKBP-rapamycin-associated protein (FRAP) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 94
Score = 26.2 bits (58), Expect = 5.0
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 566 LSEAH-AKMRYSETVEVQDVDEAWRLHREALKQ 597
L EA +Y ++ V+D+ +AW L+ ++
Sbjct: 60 LMEAQEWCRKYMKSGNVKDLTQAWDLYYHVFRR 92
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 27.4 bits (59), Expect = 6.5
Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 6/108 (5%)
Query: 348 ILLCGDPGTSKSQLLSYVYDLVPRSQYTSG------KGSSAVGLTAYITKDPETRQMVLQ 401
G G+ K+Q++ + ++ KG A YI + R +
Sbjct: 37 TEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM 96
Query: 402 TGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQL 449
A G +D + E+ I + I +
Sbjct: 97 QMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLV 144
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 27.0 bits (58), Expect = 6.9
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 345 EINILLCGDPGTSKSQLLSY 364
E+ IL+ G G K+ +L
Sbjct: 5 EMRILILGLDGAGKTTILYR 24
>d2ae6a1 d.108.1.1 (A:1-161) Putative acetyltransferase EF0244
{Enterococcus faecalis [TaxId: 1351]}
Length = 161
Score = 26.6 bits (57), Expect = 8.9
Identities = 9/84 (10%), Positives = 25/84 (29%), Gaps = 3/84 (3%)
Query: 255 NLRHLNPEDIDQLITINGMVIRTSNI---IPEMREAFFRCIVCNYSTTVEIDRGRIHEPT 311
+R + D L ++ ++ N I + A ++ + + + V I ++
Sbjct: 6 TIRLVAEADWPALHALDQIIWTKKNTPAEIQPLSLAAYQEKMKDETIFVAISGQQLAGFI 65
Query: 312 LCTNCSTNHCFSLVHNRSHFTDKQ 335
++ S
Sbjct: 66 EVHPPTSLAAHQKQWLLSIGVSPD 89
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 27.0 bits (58), Expect = 8.9
Identities = 11/54 (20%), Positives = 16/54 (29%)
Query: 348 ILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQ 401
L G+ T KSQL + G + + T P + Q
Sbjct: 37 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQ 90
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 26.2 bits (56), Expect = 9.4
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 345 EINILLCGDPGTSKSQLLSY 364
E+ + L G + K+ ++
Sbjct: 2 EMELTLVGLQYSGKTTFVNV 21
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 26.5 bits (57), Expect = 9.7
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 336 LVRLQETPA-EINILLCGDPGTSKSQLL 362
L +L+ P E+ ILL G K+ LL
Sbjct: 6 LRKLKSAPDQEVRILLLGLDNAGKTTLL 33
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.389
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,581,406
Number of extensions: 121230
Number of successful extensions: 534
Number of sequences better than 10.0: 1
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 36
Length of query: 720
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 628
Effective length of database: 1,144,436
Effective search space: 718705808
Effective search space used: 718705808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)