BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17704
(412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TQQ|A Chain A, Structure Of The Methionyl-Trna Formyltransferase (Fmt)
From Coxiella Burnetii
Length = 314
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 102/156 (65%), Gaps = 2/156 (1%)
Query: 42 LIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGI 101
LI N D+ +VV++G ++P K +NAF LG +NVH S+LPRWRGAAPI AIL GD ETGI
Sbjct: 76 LIAXNADVXVVVAYGLILPKKALNAFRLGCVNVHASLLPRWRGAAPIQRAILAGDRETGI 135
Query: 102 SIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPA 161
SI + + D G+++ + C IS +DTA +LH++L+L+G LLLE + + + +
Sbjct: 136 SIXQXN-EGLDTGDVLAKSACVISSEDTAADLHDRLSLIGADLLLESLAKLEKGDIKLEK 194
Query: 162 QPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRAL 197
Q + ATYA+KI ++IDW S+V++ RA
Sbjct: 195 QDEASATYASKIQKQEALIDWRK-SAVEIARQVRAF 229
>pdb|3R8X|A Chain A, Crystal Structure Of Methionyl-Trna Formyltransferase From
Yersinia Pestis Complexed With L-Methionine
Length = 318
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 3/157 (1%)
Query: 42 LIKD-NYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETG 100
L+ D N DI +VV++G ++P+ ++ LG INVHGS+LPRWRGAAPI ++ GD +TG
Sbjct: 80 LVADLNADIMVVVAYGLILPAAVLAMPRLGCINVHGSLLPRWRGAAPIQRSVWAGDEKTG 139
Query: 101 ISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAP 160
I+I+++ D G ++ + C+I P+DT+ L++KLA +G Q LL ++ + A
Sbjct: 140 ITIMQMD-IGLDTGAMLHKIECAIQPEDTSATLYDKLAQLGPQGLLITLQQLAAGTALAE 198
Query: 161 AQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRAL 197
Q + ATYA K+ + +DW T+S+ Q+ RA
Sbjct: 199 VQNETQATYAEKLSKEEAKLDW-TLSATQLERCIRAF 234
>pdb|3Q0I|A Chain A, Methionyl-Trna Formyltransferase From Vibrio Cholerae
Length = 318
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 87/142 (61%), Gaps = 1/142 (0%)
Query: 46 NYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIR 105
N D+ +VV++G L+P +++ LG INVHGSILPRWRGAAPI +I GD ETG++I +
Sbjct: 85 NADLXVVVAYGLLLPKVVLDTPKLGCINVHGSILPRWRGAAPIQRSIWAGDSETGVTIXQ 144
Query: 106 VRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDE 165
D G+ ++ I DT+ ++KLA +G Q LLEC++D+ + A Q D
Sbjct: 145 XD-VGLDTGDXLKIATLPIEASDTSASXYDKLAELGPQALLECLQDIAQGTAVAVKQDDG 203
Query: 166 GATYANKIDWSYSVIDWNTMSS 187
A YA+K+ + I+W+ ++
Sbjct: 204 LANYAHKLSKEEARINWSDAAT 225
>pdb|1FMT|A Chain A, Methionyl-Trnafmet Formyltransferase From Escherichia Coli
pdb|1FMT|B Chain B, Methionyl-Trnafmet Formyltransferase From Escherichia Coli
pdb|2FMT|A Chain A, Methionyl-Trnafmet Formyltransferase Complexed With
Formyl- Methionyl-Trnafmet
pdb|2FMT|B Chain B, Methionyl-Trnafmet Formyltransferase Complexed With
Formyl- Methionyl-Trnafmet
Length = 314
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 107/184 (58%), Gaps = 8/184 (4%)
Query: 20 SPVIQFAQDEKLTLY-----RWPMDPDLIKD-NYDIGMVVSFGHLIPSKIINAFPLGMIN 73
SPV A+++ L ++ R + L+ + D+ +VV++G ++P ++ LG IN
Sbjct: 49 SPVKVLAEEKGLPVFQPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCIN 108
Query: 74 VHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGEL 133
VHGS+LPRWRGAAPI ++ GD ETG++I+++ D G+++ + C I+ +DT+G L
Sbjct: 109 VHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMD-VGLDTGDMLYKLSCPITAEDTSGTL 167
Query: 134 HNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNL 193
++KLA +G Q L+ ++ + Q + TYA K+ + IDW ++S+ Q+
Sbjct: 168 YDKLAELGPQGLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDW-SLSAAQLERC 226
Query: 194 HRAL 197
RA
Sbjct: 227 IRAF 230
>pdb|4IQF|A Chain A, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|B Chain B, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|C Chain C, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|D Chain D, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
Length = 317
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 84/160 (52%), Gaps = 9/160 (5%)
Query: 38 MDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDH 97
++PDLI + +FG ++P++I+ A G INVH S+LP RG API +AI G
Sbjct: 81 LEPDLI-------VTAAFGQIVPNEILEAPKYGCINVHASLLPELRGGAPIHYAIXEGKE 133
Query: 98 ETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVL 157
+TGI+I K D G+I+ Q I +T G L +KL+ G LL + V + + L
Sbjct: 134 KTGITIXYXVEK-LDAGDILTQVEVEIEERETTGSLFDKLSEAGAHLLSKTVPLLIQGKL 192
Query: 158 NAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRAL 197
Q +E T+A I IDW T + +VYN R L
Sbjct: 193 EPIKQNEEEVTFAYNIKREQEKIDW-TKTGEEVYNHIRGL 231
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 9/165 (5%)
Query: 38 MDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDH 97
+ PD+I Y + HLI +I+ P G N+HGS+LP++RG AP+ +++G+
Sbjct: 74 LSPDVIFSFY-------YRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGET 126
Query: 98 ETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVL 157
ETG+++ R+ K D G IV Q R +I+PDD A LH+KL QLL + + + +
Sbjct: 127 ETGVTLHRM-VKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNI 185
Query: 158 NAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYP 202
AQ + AT + S ++W+ +SV ++N+ RA+ +P
Sbjct: 186 LEIAQRENEATCFGRRTPDDSFLEWHKPASV-LHNMVRAVADPWP 229
>pdb|2BLN|A Chain A, N-Terminal Formyltransferase Domain Of Arna In Complex
With N-5-Formyltetrahydrofolate And Ump
pdb|2BLN|B Chain B, N-Terminal Formyltransferase Domain Of Arna In Complex
With N-5-Formyltetrahydrofolate And Ump
Length = 305
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 9/165 (5%)
Query: 38 MDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDH 97
+ PD+I Y + HLI +I+ P G N+HGS+LP++RG AP+ +++G+
Sbjct: 74 LSPDVIFSFY-------YRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGET 126
Query: 98 ETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVL 157
ETG+++ R+ K D G IV Q R +I+PDD A LH+KL QLL + + + +
Sbjct: 127 ETGVTLHRMV-KRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNI 185
Query: 158 NAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYP 202
AQ + AT + S ++W+ +SV ++N+ RA+ +P
Sbjct: 186 LEIAQRENEATCFGRRTPDDSFLEWHKPASV-LHNMVRAVADPWP 229
>pdb|1YRW|A Chain A, Crystal Structure Of E.Coli Arna Transformylase Domain
Length = 302
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 9/165 (5%)
Query: 38 MDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDH 97
+ PD+I Y + HLI +I+ P G N+HGS+LP++RG AP+ +++G+
Sbjct: 74 LSPDVIFSFY-------YRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGET 126
Query: 98 ETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVL 157
ETG+++ R+ K D G IV Q R +I+PDD A LH+KL QLL + + + +
Sbjct: 127 ETGVTLHRMV-KRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNI 185
Query: 158 NAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYP 202
AQ + AT + S ++W+ +SV ++N+ RA+ +P
Sbjct: 186 LEIAQRENEATCFGRRTPDDSFLEWHKPASV-LHNMVRAVADPWP 229
>pdb|1S3I|A Chain A, Crystal Structure Of The N Terminal Hydrolase Domain Of
10- Formyltetrahydrofolate Dehydrogenase
Length = 310
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 106/228 (46%), Gaps = 24/228 (10%)
Query: 11 VVSSKEGKHSPVIQFAQDEKLTLYRWP-------MDPDLIKDNYDIGM---VVSF-GHLI 59
+ K+GK P A+ + + ++++P P+++ +G V+ F I
Sbjct: 31 TIPDKDGKADPDGLEAEKDGVPVFKFPRWRARGQALPEVVAKYQALGAELNVLPFCSQFI 90
Query: 60 PSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQ 119
P ++INA G I H S+LPR RGA+ I ++HGD + G +I D G+++ Q
Sbjct: 91 PMEVINAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFTIFWAD-DGLDTGDLLLQ 149
Query: 120 YRCSISPDDTAGELHNKLALVGG-QLLLECVR-----DMPRCVLNAPAQPDEGATYANKI 173
C + PDDT L+N+ G + +++ VR PRC Q +EGATY
Sbjct: 150 KECEVLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGTAPRC-----PQSEEGATYEGIQ 204
Query: 174 DWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDT 221
+ I+W+ + ++N R V + G K+ N +L+T
Sbjct: 205 KKETAKINWDQPAEA-IHNWIRGNDKVPGAWTEACGQKLTFFNSTLNT 251
>pdb|2BW0|A Chain A, Crystal Structure Of The Hydrolase Domain Of Human 10-
Formyltetrahydrofolate 2 Dehydrogenase
pdb|2CFI|A Chain A, The Hydrolase Domain Of Human 10-Fthfd In Complex With 6-
Formyltetrahydropterin
Length = 329
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 111/241 (46%), Gaps = 18/241 (7%)
Query: 12 VSSKEGKHSPVIQFAQDEKLTLY---RWPMD----PDLIKDNYDIGM---VVSF-GHLIP 60
V K+GK P+ A+ + + ++ RW PD++ +G V+ F IP
Sbjct: 54 VPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAELNVLPFCSQFIP 113
Query: 61 SKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQY 120
+II+A G I H S+LPR RGA+ I ++HGD + G SI D G+++ Q
Sbjct: 114 MEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFSIFWAD-DGLDTGDLLLQK 172
Query: 121 RCSISPDDTAGELHNKLALVGG-QLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSV 179
C + PDDT L+N+ G + +++ VR + QP+EGATY +
Sbjct: 173 ECEVLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGKAPRLPQPEEGATYEGIQKKETAK 232
Query: 180 IDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTK---LRSDALLRPNTSHV 236
I+W+ + ++N R V + K+ N +L+T DAL P +H
Sbjct: 233 INWDQPAEA-IHNWIRGNDKVPGAWTEACEQKLTFFNSTLNTSGLVPEGDALPIPG-AHR 290
Query: 237 P 237
P
Sbjct: 291 P 291
>pdb|3TQR|A Chain A, Structure Of The Phosphoribosylglycinamide
Formyltransferase (Purn) In Complex With Ches From
Coxiella Burnetii
Length = 215
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 45 DNYDIGMVV--SFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGIS 102
D+YD ++V F + ++ + IN+H S+LP++ G A+ G+ E G+S
Sbjct: 80 DHYDPKLIVLAGFXRKLGKAFVSHYSGRXINIHPSLLPKYTGLNTHERALAAGETEHGVS 139
Query: 103 IIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKL 137
+ V + D G ++ Q R SI+P DT L ++
Sbjct: 140 VHYVT-EDLDAGPLICQARLSITPQDTPETLKTRV 173
>pdb|3P9X|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Bacillus Halodurans
pdb|3P9X|B Chain B, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Bacillus Halodurans
Length = 211
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 34 YRWPMDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAIL 93
Y + L + D ++ + L+ ++ A+ ++N+H S+LP + G I AI
Sbjct: 69 YEIEVVQQLKEKQIDFVVLAGYMRLVGPTLLGAYEGRIVNIHPSLLPAFPGLHAIEQAIR 128
Query: 94 HGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALV 140
TG++I V + D G I+ Q SI +DT L K+ V
Sbjct: 129 ANVKVTGVTIHYVD-EGMDTGPIIAQEAVSIEEEDTLETLTTKIQAV 174
>pdb|1ZLY|A Chain A, The Structure Of Human Glycinamide Ribonucleotide
Transformylase In Complex With Alpha,beta-n-
(hydroxyacetyl)-d-ribofuranosylamine And 10-formyl-5,8,
Dideazafolate
Length = 203
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 41 DLIKDNYDIGMV--VSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHE 98
DL+ + + I +V F ++ + + M+N+H S+LP ++G+ A+ G
Sbjct: 72 DLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTV 131
Query: 99 TGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLAL 139
TG ++ V + D G+I+ Q + DT L ++ L
Sbjct: 132 TGCTVHFV-AEDVDAGQIILQEAVPVKRGDTVATLSERVKL 171
>pdb|1MEO|A Chain A, Human Glycinamide Ribonucleotide Transformylase At Ph 4.2
pdb|1NJS|A Chain A, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1NJS|B Chain B, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBQ|A Chain A, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|B Chain B, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|C Chain C, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|D Chain D, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBY|A Chain A, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|B Chain B, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|C Chain C, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|D Chain D, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBZ|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBZ|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
Length = 209
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 41 DLIKDNYDIGMV--VSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHE 98
DL+ + + I +V F ++ + + M+N+H S+LP ++G+ A+ G
Sbjct: 72 DLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTV 131
Query: 99 TGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLAL 139
TG ++ V + D G+I+ Q + DT L ++ L
Sbjct: 132 TGCTVHFV-AEDVDAGQIILQEAVPVKRGDTVATLSERVKL 171
>pdb|1MEJ|B Chain B, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|A Chain A, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|C Chain C, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEN|A Chain A, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|B Chain B, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|C Chain C, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
Length = 223
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 41 DLIKDNYDIGMV--VSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHE 98
DL+ + + I +V F ++ + + M+N+H S+LP ++G+ A+ G
Sbjct: 83 DLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTV 142
Query: 99 TGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLAL 139
TG ++ V + D G+I+ Q + DT L ++ L
Sbjct: 143 TGCTVHFV-AEDVDAGQIILQEAVPVKRGDTVATLSERVKL 182
>pdb|3KCQ|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|B Chain B, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|C Chain C, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|D Chain D, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
Length = 215
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 35 RWPMDPDLI-----KDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIV 89
R P+D + I + + D+ + F ++P K + + +IN+H S+LP ++G
Sbjct: 66 RKPLDIEHISTVLREHDVDLVCLAGFMSILPEKFVTDWHHKIINIHPSLLPSFKGLNAQE 125
Query: 90 HAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKL 137
A G G ++ V + D G I+ Q + +DTA L +++
Sbjct: 126 QAYKAGVKIAGCTLHYVY-QELDAGPIIMQAAVPVLREDTAESLASRI 172
>pdb|2YWR|A Chain A, Crystal Structure Of Gar Transformylase From Aquifex
Aeolicus
Length = 216
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 41 DLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETG 100
+L K ++ ++ F ++ + FP +IN+H S++P ++G A+ G +G
Sbjct: 75 ELKKKGVELVVLAGFXRILSHNFLKYFPNKVINIHPSLIPAFQGLHAQKQAVEFGVKFSG 134
Query: 101 ISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKL 137
+ + + + D G ++ Q + P+D L +++
Sbjct: 135 CT-VHIVDESVDAGPVIVQAVVPVLPEDDENTLADRI 170
>pdb|3AV3|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase 1 From Geobacillus Kaustophilus
Length = 212
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 52 VVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHF 111
+ + LI +++A+ ++N+H S+LP + G I A G ETG+++ V +
Sbjct: 88 LAGYXRLIGPTLLSAYEGKIVNIHPSLLPAFPGKDAIGQAYRAGVSETGVTVHYVD-EGX 146
Query: 112 DRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDM 152
D G ++ Q I P + L ++ V +L +R +
Sbjct: 147 DTGPVIAQRVVPIVPGEPIEALEERIHQVEHELYPTVLRXL 187
>pdb|3O1L|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str.
Dc3000 At 2.20 A Resolution
pdb|3O1L|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str.
Dc3000 At 2.20 A Resolution
Length = 302
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
D+ ++ + ++P ++ + +IN+H S LP + GA P A L G G + V
Sbjct: 183 DVVVLARYXQILPPQLCREYAHQVINIHHSFLPSFVGAKPYHQASLRGVKLIGATCHYV- 241
Query: 108 PKHFDRGEIVRQYRCSISPDDT 129
+ D G I+ Q +S D+
Sbjct: 242 TEELDAGPIIEQDVVRVSHRDS 263
>pdb|3AUF|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase 1 From Symbiobacterium Toebii
Length = 229
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 47 YDIGMVVSFGH--LIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISII 104
Y + +V G+ L+ ++ AFP ++N+H S+LP + G A+ HG G ++
Sbjct: 100 YGVDLVCLAGYMRLVRGPMLTAFPNRILNIHPSLLPAFPGLEAQRQALEHGVKVAGCTV- 158
Query: 105 RVRPKHF-----DRGEIVRQYRCSISPDDTAGELHNKL 137
HF D G I+ Q + DT +L ++
Sbjct: 159 -----HFVTAGVDEGPIILQAAVPVLEGDTVEDLRRRI 191
>pdb|1ZLX|A Chain A, The Apo Structure Of Human Glycinamide Ribonucleotide
Transformylase
Length = 203
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 41 DLIKDNYDIGMV--VSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHE 98
DL+ + + I +V F ++ + + +N+H S+LP ++G+ A+ G
Sbjct: 72 DLVLEEFSIDIVCLAGFXRILSGPFVQKWNGKXLNIHPSLLPSFKGSNAHEQALETGVTV 131
Query: 99 TGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLAL 139
TG ++ V + D G+I+ Q + DT L ++ L
Sbjct: 132 TGCTVHFV-AEDVDAGQIILQEAVPVKRGDTVATLSERVKL 171
>pdb|1GRC|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase From Escherichia Coli At 3.0 Angstroms
Resolution: A Target Enzyme For Chemotherapy
pdb|1GRC|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase From Escherichia Coli At 3.0 Angstroms
Resolution: A Target Enzyme For Chemotherapy
pdb|1GAR|A Chain A, Towards Structure-Based Drug Design: Crystal Structure Of
A Multisubstrate Adduct Complex Of Glycinamide
Ribonucleotide Transformylase At 1.96 Angstroms
Resolution
pdb|1GAR|B Chain B, Towards Structure-Based Drug Design: Crystal Structure Of
A Multisubstrate Adduct Complex Of Glycinamide
Ribonucleotide Transformylase At 1.96 Angstroms
Resolution
pdb|1C2T|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylase
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1C2T|B Chain B, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylase
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1JKX|A Chain A, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|B Chain B, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|C Chain C, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|D Chain D, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1CDE|A Chain A, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|B Chain B, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|C Chain C, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|D Chain D, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
Length = 212
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
D+ ++ F ++ ++ + ++N+H S+LP++ G A+ +GD E G S+ V
Sbjct: 81 DVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVT 140
Query: 108 PKHFDRGEIVRQYRCSISPDDTAGEL 133
+ D G ++ Q + + D+ ++
Sbjct: 141 DE-LDGGPVILQAKVPVFAGDSEDDI 165
>pdb|1CDD|A Chain A, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDD|B Chain B, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
Length = 212
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
D+ ++ F ++ ++ + ++N+H S+LP++ G A+ +GD E G S+ V
Sbjct: 81 DVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVT 140
Query: 108 PKHFDRGEIVRQYRCSISPDDTAGEL 133
+ D G ++ Q + + D+ ++
Sbjct: 141 DE-LDGGPVILQAKVPVFAGDSEDDI 165
>pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1C3E|B Chain B, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid
Length = 209
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
D+ ++ F ++ ++ + ++N+H S+LP++ G A+ +GD E G S+ V
Sbjct: 81 DVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVT 140
Query: 108 PKHFDRGEIVRQYRCSISPDDTAGEL 133
+ D G ++ Q + + D+ ++
Sbjct: 141 DE-LDGGPVILQAKVPVFAGDSEDDI 165
>pdb|2GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop
Observed From Low And High Ph Crystal Structures Of
Mutant Monomeric Glycinamide Ribonucleotide
Transformylase
pdb|3GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop
Observed From Low And High Ph Crystal Structures Of
Mutant Monomeric Glycinamide Ribonucleotide
Transformylase
Length = 212
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
D+ ++ F ++ ++ + ++N+H S+LP++ G A+ +GD E G S+ V
Sbjct: 81 DVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVT 140
Query: 108 PKHFDRGEIVRQYRCSISPDDTAGEL 133
+ D G ++ Q + + D+ ++
Sbjct: 141 DE-LDGGPVILQAKVPVFAGDSEDDI 165
>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
Length = 287
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 59 IPSKIINAFPLG-MINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHF-----D 112
I S ++AF G IN+H S LP ++GA P H H G+ +I HF D
Sbjct: 177 ILSDDLSAFLSGRCINIHHSFLPGFKGAKP-----YHQAHTRGVKLIGA-TAHFVTADLD 230
Query: 113 RGEIVRQYRCSISPDDTAGELHNK 136
G I+ Q +S D+A +L K
Sbjct: 231 EGPIIAQDVEHVSHRDSAEDLVRK 254
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 16/153 (10%)
Query: 114 GEIVRQYRCSISPDDTAGELHNKLALV-GGQLLLECVRDMPRCVLNAPAQ----PDEGAT 168
GE R + ++ D + N LALV G++LLE +++ + + P G T
Sbjct: 82 GEDSRFFHYGLTSSDVL-DTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRT 140
Query: 169 Y---ANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNI--SLDTKL 223
+ A + V+ W + V L RA+ V + G N+ ++ K
Sbjct: 141 HGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVS--YGKISGAVGNYANVPPEVEEKA 198
Query: 224 RSDALLRP---NTSHVPRDQHSQLTSALSFLSG 253
S L+P +T VPRD+H+ S L+ ++
Sbjct: 199 LSYLGLKPEPVSTQVVPRDRHAFYLSTLAIVAA 231
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 16/153 (10%)
Query: 114 GEIVRQYRCSISPDDTAGELHNKLALV-GGQLLLECVRDMPRCVLNAPAQ----PDEGAT 168
GE R + ++ D + N LALV G++LLE +++ + + P G T
Sbjct: 81 GEDSRFFHYGLTSSDVL-DTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRT 139
Query: 169 Y---ANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNI--SLDTKL 223
+ A + V+ W + V L RA+ V + G N+ ++ K
Sbjct: 140 HGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVS--YGKISGAVGNYANVPPEVEEKA 197
Query: 224 RSDALLRP---NTSHVPRDQHSQLTSALSFLSG 253
S L+P +T VPRD+H+ S L+ ++
Sbjct: 198 LSYLGLKPEPVSTQVVPRDRHAFYLSTLAIVAA 230
>pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
Length = 288
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 72 INVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAG 131
IN+H S LP ++GA P A G G + V D G I+ Q IS DT
Sbjct: 192 INIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSA-LDEGPIIDQDVERISHRDTPA 250
Query: 132 ELHNK 136
+L K
Sbjct: 251 DLVRK 255
>pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|B Chain B, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|C Chain C, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|D Chain D, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
Length = 292
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
Query: 72 INVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHF-----DRGEIVRQ 119
IN+H S LP ++GA P H H G+ +I HF D G I+ Q
Sbjct: 197 INIHHSFLPGFKGAKP-----YHQAHARGVKLIGA-TAHFVTDDLDEGPIIEQ 243
>pdb|1YSL|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 402
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 135 NKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWS----YSVIDWNTMSSVQV 190
N +AL + +L D+ + LN+ +P +GA + S ++ + N M + +
Sbjct: 142 NHVALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKEDNVMLTQDI 201
Query: 191 YNLHRALGHVYPLL 204
Y+ R GH YP++
Sbjct: 202 YDFWRPTGHPYPMV 215
>pdb|2HDB|A Chain A, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
pdb|2HDB|B Chain B, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
Length = 383
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 135 NKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWS----YSVIDWNTMSSVQV 190
N +AL + +L D+ + LN+ +P +GA + S ++ + N M + +
Sbjct: 123 NHVALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKEDNVMLTQDI 182
Query: 191 YNLHRALGHVYPLL 204
Y+ R GH YP++
Sbjct: 183 YDFWRPTGHPYPMV 196
>pdb|1X9E|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
pdb|1X9E|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
Length = 383
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 135 NKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWS----YSVIDWNTMSSVQV 190
N +AL + +L D+ + LN+ +P +GA + S ++ + N M + +
Sbjct: 123 NHVALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKEDNVMLTQDI 182
Query: 191 YNLHRALGHVYPLL 204
Y+ R GH YP++
Sbjct: 183 YDFWRPTGHPYPMV 196
>pdb|1YSL|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 384
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 135 NKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWS----YSVIDWNTMSSVQV 190
N +AL + +L D+ + LN+ +P +GA + S ++ + N M + +
Sbjct: 124 NHVALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKEDNVMLTQDI 183
Query: 191 YNLHRALGHVYPLL 204
Y+ R GH YP++
Sbjct: 184 YDFWRPTGHPYPMV 197
>pdb|3V4N|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
Length = 388
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 135 NKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWS----YSVIDWNTMSSVQV 190
N +AL + +L D+ + LN+ +P +GA + S ++ + N M + +
Sbjct: 128 NHVALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVSSEPRILALKEDNVMLTQDI 187
Query: 191 YNLHRALGHVYPLL 204
Y+ R GH YP++
Sbjct: 188 YDFWRPTGHPYPMV 201
>pdb|3V4X|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
Length = 388
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 135 NKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWS----YSVIDWNTMSSVQV 190
N +AL + +L D+ + LN+ +P +GA + S ++ + N M + +
Sbjct: 128 NHVALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVSSEPRILALKEDNVMLTQDI 187
Query: 191 YNLHRALGHVYPLL 204
Y+ R GH YP++
Sbjct: 188 YDFWRPTGHPYPMV 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,980,041
Number of Sequences: 62578
Number of extensions: 490507
Number of successful extensions: 825
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 786
Number of HSP's gapped (non-prelim): 43
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)