BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17704
(412 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96DP5|FMT_HUMAN Methionyl-tRNA formyltransferase, mitochondrial OS=Homo sapiens
GN=MTFMT PE=2 SV=2
Length = 389
Score = 188 bits (478), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 97/238 (40%), Positives = 140/238 (58%), Gaps = 12/238 (5%)
Query: 1 RTNTLISKLEVVS--SKEGKHSPVIQFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSFGHL 58
+ LI KLEVV+ S K PV Q+A +L +Y WP D+ YD+G+V SFG L
Sbjct: 73 KEEELIDKLEVVTMPSPSPKGLPVKQYAVQSQLPVYEWP---DVGSGEYDVGVVASFGRL 129
Query: 59 IPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVR 118
+ +I FP G++NVH S LPRWRG AP++H +LHGD TG++I+++RPK FD G I++
Sbjct: 130 LNEALILKFPYGILNVHPSCLPRWRGPAPVIHTVLHGDTVTGVTIMQIRPKRFDVGPILK 189
Query: 119 QYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYS 178
Q + P TA EL L+ +G +L+ ++++P + N QP EGATYA KI S
Sbjct: 190 QETVPVPPKSTAKELEAVLSRLGANMLISVLKNLPESLSNGRQQPMEGATYAPKISAGTS 249
Query: 179 VIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKL-------HNISLDTKLRSDALL 229
I W +S Q++ L+RA+G++ PL W +KL ++ D KL AL+
Sbjct: 250 CIKWEEQTSEQIFRLYRAIGNIIPLQTLWMANTIKLLDLVEVNSSVLADPKLTGQALI 307
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 341 LTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYL------GKVKNE 394
L PG V + + S++L V C DG +V KK +TA DF NGYL
Sbjct: 306 LIPGSVIYHKQSQILLVYCKDG---WIGVRSVMLKKSLTATDFYNGYLHPWYQKNSQAQP 362
Query: 395 SDKRFMNLDKQLYSKEKK 412
S RF L K+KK
Sbjct: 363 SQCRFQTLRLPTKKKQKK 380
>sp|Q5I0C5|FMT_RAT Methionyl-tRNA formyltransferase, mitochondrial OS=Rattus
norvegicus GN=Mtfmt PE=2 SV=1
Length = 385
Score = 181 bits (460), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 131/219 (59%), Gaps = 5/219 (2%)
Query: 1 RTNTLISKLEVVS--SKEGKHSPVIQFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSFGHL 58
+ LI KLEVV+ S K PV Q+A +L +Y WP D+ YD+G+V SFG L
Sbjct: 68 KEEKLIEKLEVVTVPSISPKGLPVKQYAIQSQLPVYEWP---DMGSGEYDVGVVASFGRL 124
Query: 59 IPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVR 118
+ +I FP G++NVH S LPRWRG API+H +LHGD TG++I++VRPK FD G I++
Sbjct: 125 LSEALILKFPYGILNVHPSCLPRWRGPAPIIHTVLHGDTVTGVTIMQVRPKRFDVGPILK 184
Query: 119 QYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYS 178
Q ++ P T+ EL L+ +G +L+ ++++P + N QP EG TYA K+ S
Sbjct: 185 QETVAVPPKSTSKELEAVLSKLGANMLISVLKNLPESLNNGRPQPAEGVTYAPKVSAGTS 244
Query: 179 VIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNI 217
+ W +S QV LH A+G + PL W VKL ++
Sbjct: 245 CVKWEEQTSEQVLRLHLAIGDIVPLQTLWMENTVKLLDL 283
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 325 EPTDRLTEEPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFK 384
E + + +P + +TPG V + R S++L V C DG ++ KK +TA DF
Sbjct: 285 EVNNSILADPKVMGQTVTPGSVVYHRPSQMLLVHCKDG---WIGVRSIMHKKTLTATDFY 341
Query: 385 NGYL 388
NGYL
Sbjct: 342 NGYL 345
>sp|Q9D799|FMT_MOUSE Methionyl-tRNA formyltransferase, mitochondrial OS=Mus musculus
GN=Mtfmt PE=2 SV=3
Length = 386
Score = 178 bits (452), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 129/215 (60%), Gaps = 5/215 (2%)
Query: 5 LISKLEVVS--SKEGKHSPVIQFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSFGHLIPSK 62
LI KLEVV+ S K PV Q+A +L +Y WP D+ YD+G+V SFG L+
Sbjct: 72 LIEKLEVVTVPSLSPKGLPVKQYAIQSQLPVYEWP---DVGSGEYDVGVVASFGRLLSEA 128
Query: 63 IINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRC 122
+I FP G++NVH S LPRWRG API+H +LHGD TG++I+++RPK FD G I++Q
Sbjct: 129 LILKFPYGILNVHPSCLPRWRGPAPIIHTVLHGDTVTGVTIMQIRPKRFDIGPILQQETI 188
Query: 123 SISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDW 182
+ P T+ EL L+ +G +L+ ++++P + N QP EG TYA K+ S + W
Sbjct: 189 PVPPKSTSKELEAVLSKLGANMLISVLKNLPESLNNGRPQPAEGVTYAPKVSAGTSCVKW 248
Query: 183 NTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNI 217
+S QV LH A+G + PL W VKL ++
Sbjct: 249 EEQTSEQVLRLHLAIGDIVPLQTLWMENTVKLLDL 283
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 341 LTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYL 388
+TPGFV + R S++L VRC DG +V KK +TA DF NGYL
Sbjct: 301 VTPGFVVYHRPSQMLLVRCKDG---WIGVRSVMLKKTLTATDFYNGYL 345
>sp|O77480|FMT_BOVIN Methionyl-tRNA formyltransferase, mitochondrial OS=Bos taurus
GN=MTFMT PE=1 SV=2
Length = 390
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 131/219 (59%), Gaps = 4/219 (1%)
Query: 12 VSSKEGKHSPVIQFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGM 71
V S K PV Q+A +L +Y WP D+ YD+G+V SFG L+ I FP G+
Sbjct: 90 VPSPSPKGLPVKQYAVQSQLPVYEWP---DVGSGEYDVGVVASFGRLLSEAFILKFPYGI 146
Query: 72 INVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAG 131
+NVH S LPRWRG API+H ILHGD G++I++++P+ FD G I++Q + P T+
Sbjct: 147 LNVHPSCLPRWRGPAPIIHTILHGDTIAGVTIMQIKPRRFDVGPILKQETVPVPPKSTSK 206
Query: 132 ELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVY 191
EL L+ +G +L+ ++++P + N QP EG T+A KI + S I W +S Q++
Sbjct: 207 ELEAVLSRLGANMLISVLKNLPESLNNGRQQPAEGVTHAPKISAATSCIKWEEQTSEQIF 266
Query: 192 NLHRALGHVYPLLAQWHGVKVKLHN-ISLDTKLRSDALL 229
L+RA+G++ PL W +KL + + +D + SD+ L
Sbjct: 267 RLYRAVGNIIPLQTLWMDNTIKLLDLVEVDNSILSDSKL 305
>sp|Q83AA8|FMT_COXBU Methionyl-tRNA formyltransferase OS=Coxiella burnetii (strain RSA
493 / Nine Mile phase I) GN=fmt PE=1 SV=1
Length = 314
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 104/156 (66%), Gaps = 2/156 (1%)
Query: 42 LIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGI 101
LI N D+ +VV++G ++P K +NAF LG +NVH S+LPRWRGAAPI AIL GD ETGI
Sbjct: 76 LIAMNADVMVVVAYGLILPKKALNAFRLGCVNVHASLLPRWRGAAPIQRAILAGDRETGI 135
Query: 102 SIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPA 161
SI+++ + D G+++ + C IS +DTA +LH++L+L+G LLLE + + + +
Sbjct: 136 SIMQMN-EGLDTGDVLAKSACVISSEDTAADLHDRLSLIGADLLLESLAKLEKGDIKLEK 194
Query: 162 QPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRAL 197
Q + ATYA+KI ++IDW S+V++ RA
Sbjct: 195 QDEASATYASKIQKQEALIDWRK-SAVEIARQVRAF 229
>sp|A9N9H5|FMT_COXBR Methionyl-tRNA formyltransferase OS=Coxiella burnetii (strain RSA
331 / Henzerling II) GN=fmt PE=3 SV=1
Length = 314
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 104/156 (66%), Gaps = 2/156 (1%)
Query: 42 LIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGI 101
LI N D+ +VV++G ++P K +NAF LG +NVH S+LPRWRGAAPI AIL GD ETGI
Sbjct: 76 LIAMNADVMVVVAYGLILPKKALNAFRLGCVNVHASLLPRWRGAAPIQRAILAGDRETGI 135
Query: 102 SIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPA 161
SI+++ + D G+++ + C IS +DTA +LH++L+L+G LLLE + + + +
Sbjct: 136 SIMQMN-EGLDTGDVLAKSACVISSEDTAADLHDRLSLIGADLLLESLAKLEKGDIKLEK 194
Query: 162 QPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRAL 197
Q + ATYA+KI ++IDW S+V++ RA
Sbjct: 195 QDEASATYASKIQKQEALIDWRK-SAVEIARQVRAF 229
>sp|A9KH14|FMT_COXBN Methionyl-tRNA formyltransferase OS=Coxiella burnetii (strain
Dugway 5J108-111) GN=fmt PE=3 SV=1
Length = 314
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 104/156 (66%), Gaps = 2/156 (1%)
Query: 42 LIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGI 101
LI N D+ +VV++G ++P K +NAF LG +NVH S+LPRWRGAAPI AIL GD ETGI
Sbjct: 76 LIAMNADVMVVVAYGLILPKKALNAFRLGCVNVHASLLPRWRGAAPIQRAILAGDRETGI 135
Query: 102 SIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPA 161
SI+++ + D G+++ + C IS +DTA +LH++L+L+G LLLE + + + +
Sbjct: 136 SIMQMN-EGLDTGDVLAKSACVISSEDTAADLHDRLSLIGADLLLESLAKLEKGDIKLEK 194
Query: 162 QPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRAL 197
Q + ATYA+KI ++IDW S+V++ RA
Sbjct: 195 QDEASATYASKIQKQEALIDWRK-SAVEIARQVRAF 229
>sp|B6J3C2|FMT_COXB2 Methionyl-tRNA formyltransferase OS=Coxiella burnetii (strain
CbuG_Q212) GN=fmt PE=3 SV=1
Length = 314
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 104/156 (66%), Gaps = 2/156 (1%)
Query: 42 LIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGI 101
LI N D+ +VV++G ++P K +NAF LG +NVH S+LPRWRGAAPI AIL GD ETGI
Sbjct: 76 LIAMNADVMVVVAYGLILPKKALNAFRLGCVNVHASLLPRWRGAAPIQRAILAGDRETGI 135
Query: 102 SIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPA 161
SI+++ + D G+++ + C IS +DTA +LH++L+L+G LLLE + + + +
Sbjct: 136 SIMQMN-EGLDTGDVLAKSACVISSEDTAADLHDRLSLIGADLLLESLAKLEKGDIKLEK 194
Query: 162 QPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRAL 197
Q + ATYA+KI ++IDW S+V++ RA
Sbjct: 195 QDEASATYASKIQKQEALIDWRK-SAVEIARQVRAF 229
>sp|B6J655|FMT_COXB1 Methionyl-tRNA formyltransferase OS=Coxiella burnetii (strain
CbuK_Q154) GN=fmt PE=3 SV=1
Length = 314
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 104/156 (66%), Gaps = 2/156 (1%)
Query: 42 LIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGI 101
LI N D+ +VV++G ++P K +NAF LG +NVH S+LPRWRGAAPI AIL GD ETGI
Sbjct: 76 LIAMNADVMVVVAYGLILPKKALNAFRLGCVNVHASLLPRWRGAAPIQRAILAGDRETGI 135
Query: 102 SIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPA 161
SI+++ + D G+++ + C IS +DTA +LH++L+L+G LLLE + + + +
Sbjct: 136 SIMQMN-EGLDTGDMLAKSACVISSEDTAADLHDRLSLIGADLLLESLAKLEKGDIKLEK 194
Query: 162 QPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRAL 197
Q + ATYA+KI ++I+W S+V++ RA
Sbjct: 195 QDEASATYASKIQKQEALINWRK-SAVEIARQVRAF 229
>sp|Q98D53|FMT_RHILO Methionyl-tRNA formyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=fmt PE=3 SV=1
Length = 317
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 108/183 (59%), Gaps = 7/183 (3%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
DI +VV++G L+P I++A LG IN H S+LPRWRGAAPI AI+ GD E+G+ ++R+
Sbjct: 83 DIAVVVAYGLLLPKVILDAPRLGCINGHASLLPRWRGAAPIQRAIMAGDLESGMMVMRME 142
Query: 108 PKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGA 167
+ D G + +C+I PD TAG+LH++L VG L++E + + + L AQ EG
Sbjct: 143 -EGLDTGPVGLLEKCAIDPDMTAGDLHDRLMRVGAALMVEALARLAKNTLTFTAQAAEGV 201
Query: 168 TYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKV--KLHNISLDTKLRS 225
TYA KID S + +DW T + +V+N R L P W + + ++ + L S
Sbjct: 202 TYARKIDKSETRVDW-TRPAAEVHNHLRGL---SPFPGAWSEIDIGGRMERLKLLRSTLS 257
Query: 226 DAL 228
D L
Sbjct: 258 DGL 260
>sp|A7HPQ2|FMT_PARL1 Methionyl-tRNA formyltransferase OS=Parvibaculum lavamentivorans
(strain DS-1 / DSM 13023 / NCIMB 13966) GN=fmt PE=3 SV=1
Length = 310
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 107/174 (61%), Gaps = 15/174 (8%)
Query: 20 SPVIQFAQDEKLTLYRWPMDPDLIKD----------NYDIGMVVSFGHLIPSKIINAFPL 69
SPV +FA++ + ++ P +K + D+ +VV++G ++P ++ A L
Sbjct: 46 SPVHRFAEEHGIPVF----TPVSLKGEAEQQAFASLDLDVAVVVAYGLILPKPVLEAPRL 101
Query: 70 GMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDT 129
G +N+H S+LPRWRGAAPI AI+ GD ETG+ ++++ + D G ++ R +I+PD+T
Sbjct: 102 GCLNLHASLLPRWRGAAPIQRAIMAGDAETGVMVMQME-EGLDTGPVLLAERVAIAPDET 160
Query: 130 AGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWN 183
AG LH++L+ +G L++ + + R L A QP+EG TYA KI+ + + IDW
Sbjct: 161 AGGLHDRLSHIGASLMVRALAALSRGGLAAAPQPEEGVTYARKIEKAEARIDWR 214
>sp|Q8K974|FMT_BUCAP Methionyl-tRNA formyltransferase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=fmt PE=3 SV=1
Length = 314
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 99/162 (61%), Gaps = 5/162 (3%)
Query: 41 DLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETG 100
++ N D+ +VVS+G LIP +I+ FP G INVH S+LPRWRGA PI AIL GD ETG
Sbjct: 76 EIFNLNADMMIVVSYGKLIPKEILTMFPKGCINVHTSLLPRWRGATPIQSAILFGDKETG 135
Query: 101 ISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAP 160
ISII++ K D G I+ +C+I P+DT L KL +G Q+LL+ + + + ++
Sbjct: 136 ISIIKMNEK-MDAGTIINSVKCNILPNDTTETLTFKLIEIGIQVLLKTLYYINKNIVVEK 194
Query: 161 AQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYP 202
Q ++ AT++ KI ++++WNT + Y L R + P
Sbjct: 195 EQNEKHATFSKKISKKDALLNWNT----EAYLLERLIRAFNP 232
>sp|Q67PR4|FMT_SYMTH Methionyl-tRNA formyltransferase OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=fmt PE=3 SV=1
Length = 326
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 95/155 (61%), Gaps = 12/155 (7%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
D+ +VV++G ++ + + PLG INVH S+LPRWRGAAPI AI+ GD ETG+ + +
Sbjct: 81 DLTVVVAYGQILSREALEISPLGSINVHASLLPRWRGAAPIQRAIMAGDVETGVCTMWMD 140
Query: 108 PKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVR-----DMPRCVLNAPAQ 162
+ D G++ R I PD T GELH++LA VG +LLLE VR D PR Q
Sbjct: 141 -EGMDTGDVCLTARVPIGPDTTGGELHDELARVGAELLLETVRRVEAGDAPRI-----PQ 194
Query: 163 PDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRAL 197
P EG TYA K++ + VIDW + ++YN RAL
Sbjct: 195 PAEGVTYAAKLEPADEVIDWARPAE-ELYNQIRAL 228
>sp|A6WYK8|FMT_OCHA4 Methionyl-tRNA formyltransferase OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=fmt PE=3 SV=1
Length = 306
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 106/181 (58%), Gaps = 7/181 (3%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
D+ +VV++G L+P I++A LG N H S+LPRWRGAAPI AI+ GD ETG+ I+++
Sbjct: 81 DVAIVVAYGLLLPQAILDAPRLGCYNGHASLLPRWRGAAPIQRAIMAGDSETGMMIMKMD 140
Query: 108 PKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGA 167
D G + + +I+PD TAGELH++L+++G L++ + + R L Q +EG
Sbjct: 141 -AGLDTGPVAMAEKVAITPDMTAGELHDRLSMIGADLMIRALGALERESLALQPQAEEGV 199
Query: 168 TYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLRSDA 227
TYA KID + + IDW S ++H + + P W +++++ KL+ A
Sbjct: 200 TYAAKIDKAEARIDW----SKPAQDVHNTIRGLSPFPGAW--CEMEINGAVERVKLQRSA 253
Query: 228 L 228
L
Sbjct: 254 L 254
>sp|P64133|FMT_BRUSU Methionyl-tRNA formyltransferase OS=Brucella suis biovar 1 (strain
1330) GN=fmt PE=3 SV=1
Length = 306
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 99/160 (61%), Gaps = 5/160 (3%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
D+ +VV++G L+P I++A LG N H S+LPRWRGAAPI AI+ GD ETG+ I+++
Sbjct: 81 DVAIVVAYGLLLPKAILDAPRLGCYNGHASLLPRWRGAAPIQRAIMAGDAETGMMIMKMD 140
Query: 108 PKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGA 167
+ D G + + +I+PD TAGELH++L+++G L++ + + R L Q +EG
Sbjct: 141 -EGLDTGPVAMAEKVAITPDMTAGELHDRLSMIGADLMIRALGALERESLALQPQAEEGV 199
Query: 168 TYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQW 207
TYA KID + + IDW+ + ++H ++ + P W
Sbjct: 200 TYAAKIDKAEARIDWSKPAK----DVHNSIRGLSPFPGAW 235
>sp|P64132|FMT_BRUME Methionyl-tRNA formyltransferase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=fmt PE=3 SV=1
Length = 306
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 99/160 (61%), Gaps = 5/160 (3%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
D+ +VV++G L+P I++A LG N H S+LPRWRGAAPI AI+ GD ETG+ I+++
Sbjct: 81 DVAIVVAYGLLLPKAILDAPRLGCYNGHASLLPRWRGAAPIQRAIMAGDAETGMMIMKMD 140
Query: 108 PKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGA 167
+ D G + + +I+PD TAGELH++L+++G L++ + + R L Q +EG
Sbjct: 141 -EGLDTGPVAMAEKVAITPDMTAGELHDRLSMIGADLMIRALGALERESLALQPQAEEGV 199
Query: 168 TYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQW 207
TYA KID + + IDW+ + ++H ++ + P W
Sbjct: 200 TYAAKIDKAEARIDWSKPAK----DVHNSIRGLSPFPGAW 235
>sp|A9MCV9|FMT_BRUC2 Methionyl-tRNA formyltransferase OS=Brucella canis (strain ATCC
23365 / NCTC 10854) GN=fmt PE=3 SV=1
Length = 306
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 99/160 (61%), Gaps = 5/160 (3%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
D+ +VV++G L+P I++A LG N H S+LPRWRGAAPI AI+ GD ETG+ I+++
Sbjct: 81 DVAIVVAYGLLLPKAILDAPRLGCYNGHASLLPRWRGAAPIQRAIMAGDAETGMMIMKMD 140
Query: 108 PKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGA 167
+ D G + + +I+PD TAGELH++L+++G L++ + + R L Q +EG
Sbjct: 141 -EGLDTGPVAMAEKVAITPDMTAGELHDRLSMIGADLMIRALGALERESLALQPQAEEGV 199
Query: 168 TYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQW 207
TYA KID + + IDW+ + ++H ++ + P W
Sbjct: 200 TYAAKIDKAEARIDWSKPAK----DVHNSIRGLSPFPGAW 235
>sp|C0RMH3|FMT_BRUMB Methionyl-tRNA formyltransferase OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=fmt PE=3 SV=1
Length = 306
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 99/160 (61%), Gaps = 5/160 (3%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
D+ +VV++G L+P I++A LG N H S+LPRWRGAAPI AI+ GD ETG+ I+++
Sbjct: 81 DVAIVVAYGLLLPKAILDAPRLGCYNGHASLLPRWRGAAPIQRAIMAGDAETGMMIMKMD 140
Query: 108 PKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGA 167
+ D G + + +I+PD TAGELH++L+++G L++ + + R L Q +EG
Sbjct: 141 -EGLDTGPVAMAEKVAITPDMTAGELHDRLSMIGADLMIRALGALERESLALQPQAEEGV 199
Query: 168 TYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQW 207
TYA KID + + IDW+ + ++H ++ + P W
Sbjct: 200 TYAAKIDKAEARIDWSKPAK----DVHNSIRGLSPFPGAW 235
>sp|Q576T0|FMT_BRUAB Methionyl-tRNA formyltransferase OS=Brucella abortus biovar 1
(strain 9-941) GN=fmt PE=3 SV=1
Length = 306
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 98/160 (61%), Gaps = 5/160 (3%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
D+ +VV++G L+P I++A LG N H S+LPRWRGAAPI AI+ GD ETG+ I+++
Sbjct: 81 DVAIVVAYGLLLPKAILDAPRLGCYNGHASLLPRWRGAAPIQRAIMAGDAETGMMIMKMD 140
Query: 108 PKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGA 167
+ D G + + +I+PD TAGELH++L+++G L++ + + R L Q +EG
Sbjct: 141 -EGLDTGPVAMAEKVAITPDMTAGELHDRLSMIGADLMIRALGALERESLALQPQAEEGV 199
Query: 168 TYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQW 207
TYA KID + + IDW S ++H ++ + P W
Sbjct: 200 TYAAKIDKAEARIDW----SKPAKDVHNSIRGLSPFPGAW 235
>sp|Q2YJQ3|FMT_BRUA2 Methionyl-tRNA formyltransferase OS=Brucella abortus (strain 2308)
GN=fmt PE=3 SV=1
Length = 306
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 98/160 (61%), Gaps = 5/160 (3%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
D+ +VV++G L+P I++A LG N H S+LPRWRGAAPI AI+ GD ETG+ I+++
Sbjct: 81 DVAIVVAYGLLLPKAILDAPRLGCYNGHASLLPRWRGAAPIQRAIMAGDAETGMMIMKMD 140
Query: 108 PKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGA 167
+ D G + + +I+PD TAGELH++L+++G L++ + + R L Q +EG
Sbjct: 141 -EGLDTGPVAMAEKVAITPDMTAGELHDRLSMIGADLMIRALGALERESLALQPQAEEGV 199
Query: 168 TYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQW 207
TYA KID + + IDW S ++H ++ + P W
Sbjct: 200 TYAAKIDKAEARIDW----SKPAKDVHNSIRGLSPFPGAW 235
>sp|B2SC20|FMT_BRUA1 Methionyl-tRNA formyltransferase OS=Brucella abortus (strain S19)
GN=fmt PE=3 SV=1
Length = 306
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 98/160 (61%), Gaps = 5/160 (3%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
D+ +VV++G L+P I++A LG N H S+LPRWRGAAPI AI+ GD ETG+ I+++
Sbjct: 81 DVAIVVAYGLLLPKAILDAPRLGCYNGHASLLPRWRGAAPIQRAIMAGDAETGMMIMKMD 140
Query: 108 PKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGA 167
+ D G + + +I+PD TAGELH++L+++G L++ + + R L Q +EG
Sbjct: 141 -EGLDTGPVAMAEKVAITPDMTAGELHDRLSMIGADLMIRALGALERESLALQPQAEEGV 199
Query: 168 TYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQW 207
TYA KID + + IDW S ++H ++ + P W
Sbjct: 200 TYAAKIDKAEARIDW----SKPAKDVHNSIRGLSPFPGAW 235
>sp|B0UP41|FMT_METS4 Methionyl-tRNA formyltransferase OS=Methylobacterium sp. (strain
4-46) GN=fmt PE=3 SV=1
Length = 310
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 46 NYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIR 105
D+ +VV++G ++P I++A PLG +N+H SILPRWRGAAPI A++ GD ETG++++R
Sbjct: 80 GADVAVVVAYGMILPPAILDAPPLGCLNLHASILPRWRGAAPIQRAVMAGDAETGVAVMR 139
Query: 106 VRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDE 165
+ P D G + R +ISP+ TAG+LH++L +G L+ + + R L QP E
Sbjct: 140 MEPG-LDTGPVAMLERVAISPEMTAGDLHDRLMPLGADLMHRALGALERGGLTFTPQPAE 198
Query: 166 GATYANKIDWSYSVIDWNTMSSVQVYNLHRAL 197
G YA+KI + +DW T + ++++ R L
Sbjct: 199 GVVYAHKITNEEARLDW-TAPAARLHDRVRGL 229
>sp|Q5P4H6|FMT_AROAE Methionyl-tRNA formyltransferase OS=Aromatoleum aromaticum (strain
EbN1) GN=fmt PE=3 SV=1
Length = 316
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 96/150 (64%), Gaps = 6/150 (4%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
D+ +V ++G ++P +++ G +N+H S+LPRWRGAAPI AI GD ETGI+I+++
Sbjct: 85 DVLVVAAYGLILPRAVLDLPRFGCLNIHASLLPRWRGAAPIHRAIEAGDTETGITIMQMD 144
Query: 108 PKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGA 167
+ D G ++ ++ I P DT G LH++LA +G Q+++E +R +P L A QP EGA
Sbjct: 145 -EGLDTGPMLMKHAVPIGPADTTGALHDRLAALGAQMIVEALRRLPSGELVAMPQPAEGA 203
Query: 168 TYANKIDWSYSVIDWNTMSS-----VQVYN 192
TYA KI + +VIDW +S V+ +N
Sbjct: 204 TYAGKIGKAEAVIDWQCDASSVARAVRAFN 233
>sp|A5VVU0|FMT_BRUO2 Methionyl-tRNA formyltransferase OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=fmt PE=3 SV=1
Length = 306
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 99/160 (61%), Gaps = 5/160 (3%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
D+ +VV++G L+P I++A LG N H S+LPRWRGAAPI AI+ GD ETG+ I+++
Sbjct: 81 DVAIVVAYGLLLPKAILDAPRLGCYNGHASLLPRWRGAAPIQRAIMAGDAETGMMIMKMD 140
Query: 108 PKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGA 167
+ D G + + +I+PD TAGELH++L+++G L++ + + R L Q +EG
Sbjct: 141 -EGLDTGPVAMAEKVAITPDMTAGELHDRLSVIGADLMIRALGALERESLALQPQAEEGV 199
Query: 168 TYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQW 207
TYA KID + + IDW+ + ++H ++ + P W
Sbjct: 200 TYAAKIDKAEARIDWSKPAK----DVHNSIRGLSPFPGAW 235
>sp|A9WW44|FMT_BRUSI Methionyl-tRNA formyltransferase OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=fmt PE=3 SV=1
Length = 306
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 99/160 (61%), Gaps = 5/160 (3%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
D+ +VV++G L+P I++A LG N H S+LPRWRGAAPI AI+ GD ETG+ I+++
Sbjct: 81 DVAIVVAYGLLLPKAILDAPRLGCYNGHASLLPRWRGAAPIQRAIMAGDAETGMMIMKMD 140
Query: 108 PKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGA 167
+ D G + + +I+PD TAGELH++L+++G L++ + + R L Q +EG
Sbjct: 141 -EGLDTGLVAMAEKVAITPDMTAGELHDRLSMIGADLMIRALGALERESLALQPQAEEGV 199
Query: 168 TYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQW 207
TYA KID + + IDW+ + ++H ++ + P W
Sbjct: 200 TYAAKIDKAEARIDWSKPAK----DVHNSIRGLSPFPGAW 235
>sp|A1AZR0|FMT_PARDP Methionyl-tRNA formyltransferase OS=Paracoccus denitrificans
(strain Pd 1222) GN=fmt PE=3 SV=1
Length = 297
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 104/177 (58%), Gaps = 11/177 (6%)
Query: 41 DLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETG 100
D D+ +VV++G ++P ++ A LG +N+H S+LPRWRGAAPI AI+ GD ETG
Sbjct: 72 DFAALQADVAVVVAYGLILPQPVLEAPWLGCLNIHASLLPRWRGAAPIHRAIMAGDAETG 131
Query: 101 ISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAP 160
++I+++ D G ++ + R +I +DT +LH++LA +G L++E + +P L A
Sbjct: 132 VAIMQME-AGLDTGPVLAEARTTIGAEDTTADLHDRLAEMGAALIVETLHRLP---LPAE 187
Query: 161 AQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQW---HGVKVKL 214
QP EG TYA KID + + IDW ++ + R + + P W G +VKL
Sbjct: 188 PQPAEGVTYAQKIDKAEARIDWGRPAA----QVDRQIRGLSPFPGAWCLIGGERVKL 240
>sp|Q0VTE2|FMT_ALCBS Methionyl-tRNA formyltransferase OS=Alcanivorax borkumensis (strain
SK2 / ATCC 700651 / DSM 11573) GN=fmt PE=3 SV=1
Length = 330
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 113/194 (58%), Gaps = 16/194 (8%)
Query: 14 SKEGKHSPVIQFAQDEKLTLYRWPMDPDLIKD----------NYDIGMVVSFGHLIPSKI 63
K+ + SPV Q A + +T+ + P+ +K N D +VV++G +IP +
Sbjct: 43 GKKLQQSPVKQLAHSQGITV----LQPENLKGEAIHQQLRDLNLDALVVVAYGLIIPQAV 98
Query: 64 INAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCS 123
++ LG +NVHGS+LPRWRGAAPI AI GD ETG +I+++ D G ++
Sbjct: 99 LDMPRLGCLNVHGSLLPRWRGAAPIQRAITAGDTETGNTIMQME-AGLDTGPMLLSESLP 157
Query: 124 ISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWN 183
I +T GELH++LA G +LL+ ++D+ + + NA QPDEG TYA+K+ + + +D+
Sbjct: 158 IGDSETGGELHDRLAAQGARLLVTVLQDLEKYLANATPQPDEGITYAHKLSKAEARLDFR 217
Query: 184 TMSSVQVYNLHRAL 197
+ + +YN RA
Sbjct: 218 -LPTGALYNRIRAF 230
>sp|A7MPE8|FMT_CROS8 Methionyl-tRNA formyltransferase OS=Cronobacter sakazakii (strain
ATCC BAA-894) GN=fmt PE=3 SV=1
Length = 315
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 97/152 (63%), Gaps = 2/152 (1%)
Query: 46 NYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIR 105
N D+ +VV++G ++P +++ LG INVHGS+LPRWRGAAPI ++ GD ETG++I++
Sbjct: 82 NADVMVVVAYGLILPEAVLSMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQ 141
Query: 106 VRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDE 165
+ K D G+++R+ C I+ DDT+ L++KLA +G Q LL + D+ Q D
Sbjct: 142 MD-KGLDTGDMLRKLSCPITADDTSASLYDKLAQLGPQGLLATLEDLAAGRAVPEKQDDA 200
Query: 166 GATYANKIDWSYSVIDWNTMSSVQVYNLHRAL 197
ATYA+K+ + +DW T+S+ Q+ RA
Sbjct: 201 QATYADKLSKEEARLDW-TLSAAQLERCIRAF 231
>sp|Q3IDI3|FMT_PSEHT Methionyl-tRNA formyltransferase OS=Pseudoalteromonas haloplanktis
(strain TAC 125) GN=fmt PE=3 SV=1
Length = 321
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 103/175 (58%), Gaps = 2/175 (1%)
Query: 41 DLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETG 100
+L + N DI +VV++G ++P I++A LG +NVHGSILPRWRGAAPI AI GD +TG
Sbjct: 77 ELTRLNADIMIVVAYGLILPKAILDAPRLGCLNVHGSILPRWRGAAPIQRAIWAGDEQTG 136
Query: 101 ISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAP 160
++I+++ + D G+++ RC IS +T+ L+ KLA +G L++ + ++ +
Sbjct: 137 VTIMQMN-EGLDTGDMLHISRCPISATETSASLYTKLADLGPGALIDTINNLANGKITPE 195
Query: 161 AQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLH 215
Q D A YA K+ + IDW +MS+ Q+ RA Q G VK++
Sbjct: 196 PQNDAAANYAKKLSKDEANIDW-SMSAAQIERNIRAFNPWPVCFTQMGGQPVKIY 249
>sp|Q0I182|FMT_HAES1 Methionyl-tRNA formyltransferase OS=Haemophilus somnus (strain
129Pt) GN=fmt PE=3 SV=1
Length = 317
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 108/182 (59%), Gaps = 7/182 (3%)
Query: 16 EGKHSPVIQFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVH 75
E H PV Q +L + + +L K N D+ +VV++G ++P ++ FPLG +NVH
Sbjct: 56 EKHHIPVYQ-----PKSLRKVEVQENLSKLNADVMVVVAYGLILPLAVLQTFPLGCLNVH 110
Query: 76 GSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHN 135
GS+LPRWRGAAPI AI GD +TG++I+++ + D G+++ + C I+P +T+ L+
Sbjct: 111 GSLLPRWRGAAPIQRAIWAGDKKTGVTIMQMN-EGLDTGDMLHKVCCDITPTETSTSLYT 169
Query: 136 KLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHR 195
KLA + + LLE + + + + A Q + + YA K+ + +DW ++S+ Q+ R
Sbjct: 170 KLANIAPKALLEVLDGLEQSLFKAEVQDESLSNYAEKLSKEEAKLDW-SLSAEQLERCIR 228
Query: 196 AL 197
A
Sbjct: 229 AF 230
>sp|B8D822|FMT_BUCAT Methionyl-tRNA formyltransferase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain Tuc7) GN=fmt PE=3 SV=1
Length = 314
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 100/173 (57%), Gaps = 4/173 (2%)
Query: 42 LIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGI 101
L+K N DI VVS+G +IP KI+N F G INVH S+LPRWRGA PI +ILHGD +TGI
Sbjct: 77 LLKLNADIMTVVSYGKIIPKKILNMFSKGCINVHASLLPRWRGATPIQSSILHGDKKTGI 136
Query: 102 SIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPA 161
SII++ + D G I+ CSIS DT L KL +G + LLE + + +
Sbjct: 137 SIIQMNDE-IDSGNIMHSITCSISSKDTTKTLSLKLIKIGIEALLEVLEKIILNTVIYKK 195
Query: 162 QPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALG--HVYPLLAQWHGVKV 212
Q ++ + KI +++DWN +S+ ++ L RA + L+Q +KV
Sbjct: 196 QNEKNVILSKKIYKKDALLDWN-LSAEKLERLIRAFNPWPICYFLSQNKNIKV 247
>sp|P57564|FMT_BUCAI Methionyl-tRNA formyltransferase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=fmt PE=3 SV=1
Length = 314
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 100/173 (57%), Gaps = 4/173 (2%)
Query: 42 LIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGI 101
L+K N DI VVS+G +IP KI+N F G INVH S+LPRWRGA PI +ILHGD +TGI
Sbjct: 77 LLKLNADIMTVVSYGKIIPKKILNMFSKGCINVHASLLPRWRGATPIQSSILHGDKKTGI 136
Query: 102 SIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPA 161
SII++ + D G I+ CSIS DT L KL +G + LLE + + +
Sbjct: 137 SIIQMNDE-IDSGNIMHSITCSISSKDTTKTLSLKLIKIGIEALLEVLEKIILNTVIYKK 195
Query: 162 QPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALG--HVYPLLAQWHGVKV 212
Q ++ + KI +++DWN +S+ ++ L RA + L+Q +KV
Sbjct: 196 QNEKNVILSKKIYKKDALLDWN-LSAEKLERLIRAFNPWPICYFLSQNKNIKV 247
>sp|B8D9S0|FMT_BUCA5 Methionyl-tRNA formyltransferase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain 5A) GN=fmt PE=3 SV=1
Length = 314
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 100/173 (57%), Gaps = 4/173 (2%)
Query: 42 LIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGI 101
L+K N DI VVS+G +IP KI+N F G INVH S+LPRWRGA PI +ILHGD +TGI
Sbjct: 77 LLKLNADIMTVVSYGKIIPKKILNMFSKGCINVHASLLPRWRGATPIQSSILHGDKKTGI 136
Query: 102 SIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPA 161
SII++ + D G I+ CSIS DT L KL +G + LLE + + +
Sbjct: 137 SIIQMNDE-IDSGNIMHSITCSISSKDTTKTLSLKLIKIGIEALLEVLEKIILNTVIYKK 195
Query: 162 QPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALG--HVYPLLAQWHGVKV 212
Q ++ + KI +++DWN +S+ ++ L RA + L+Q +KV
Sbjct: 196 QNEKNVILSKKIYKKDALLDWN-LSAEKLERLIRAFNPWPICYFLSQNKNIKV 247
>sp|B9MI87|FMT_ACIET Methionyl-tRNA formyltransferase OS=Acidovorax ebreus (strain TPSY)
GN=fmt PE=3 SV=1
Length = 323
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 94/142 (66%), Gaps = 3/142 (2%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
D+ +V ++G ++P ++N LG +N+H S+LPRWRGAAPI AI GD ETG++I+++
Sbjct: 88 DVMVVAAYGLILPQWVLNTPRLGCLNIHASLLPRWRGAAPIHRAIEAGDAETGVTIMQMD 147
Query: 108 PKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRC-VLNAPAQPDEG 166
D G+++ + +ISP DT LH++LA +GG+L++E + +M C L QP EG
Sbjct: 148 -AGLDTGDMLLLEKTAISPADTTATLHDRLAQLGGRLIVEAL-EMAACGGLKPTPQPAEG 205
Query: 167 ATYANKIDWSYSVIDWNTMSSV 188
TYA+KID + S IDWN + V
Sbjct: 206 VTYAHKIDKAESTIDWNQPAEV 227
>sp|A1WD32|FMT_ACISJ Methionyl-tRNA formyltransferase OS=Acidovorax sp. (strain JS42)
GN=fmt PE=3 SV=1
Length = 323
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 94/142 (66%), Gaps = 3/142 (2%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
D+ +V ++G ++P ++N LG +N+H S+LPRWRGAAPI AI GD ETG++I+++
Sbjct: 88 DVMVVAAYGLILPQWVLNTPRLGCLNIHASLLPRWRGAAPIHRAIEAGDAETGVTIMQMD 147
Query: 108 PKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRC-VLNAPAQPDEG 166
D G+++ + +ISP DT LH++LA +GG+L++E + +M C L QP EG
Sbjct: 148 -AGLDTGDMLLLEKTAISPADTTATLHDRLAQLGGRLIVEAL-EMAACGGLKPTPQPAEG 205
Query: 167 ATYANKIDWSYSVIDWNTMSSV 188
TYA+KID + S IDWN + V
Sbjct: 206 VTYAHKIDKAESTIDWNQPAEV 227
>sp|Q147A4|FMT_BURXL Methionyl-tRNA formyltransferase OS=Burkholderia xenovorans (strain
LB400) GN=fmt PE=3 SV=1
Length = 328
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 107/186 (57%), Gaps = 16/186 (8%)
Query: 18 KHSPVIQFAQDEKLTLYRWP--------------MDPDLIKDNYDIGMVVSFGHLIPSKI 63
+ SPV ++AQ+ L + + P L +D+ +V ++G ++P ++
Sbjct: 48 QASPVKRYAQEHGLAVAQPPSLRRAGKYPEQAAAAIGQLRATPHDVMVVAAYGLILPQEV 107
Query: 64 INAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCS 123
++ PLG IN+H S+LPRWRGAAPI AI GD ETGI+++++ D G ++ + R +
Sbjct: 108 LDIPPLGCINIHASLLPRWRGAAPIHRAIEAGDAETGITLMQMD-VGLDTGAMISETRTA 166
Query: 124 ISPDDTAGELHNKLALVGGQLLLECVRDMPRCV-LNAPAQPDEGATYANKIDWSYSVIDW 182
IS DDT LH++LA G +L++E + ++ R L A QP EG TYA KI + +DW
Sbjct: 167 ISGDDTTATLHDRLAQDGAKLIVEALVELERTGRLAATPQPAEGVTYAEKIGKHEAALDW 226
Query: 183 NTMSSV 188
++V
Sbjct: 227 RRPAAV 232
>sp|Q603G2|FMT_METCA Methionyl-tRNA formyltransferase OS=Methylococcus capsulatus
(strain ATCC 33009 / NCIMB 11132 / Bath) GN=fmt PE=3
SV=1
Length = 308
Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 102/170 (60%), Gaps = 7/170 (4%)
Query: 20 SPVIQFAQDEKLTLY-----RWPMDPD-LIKDNYDIGMVVSFGHLIPSKIINAFPLGMIN 73
SPV Q A + L ++ + P + + L+ D+ +VV++G ++P+ ++ G +N
Sbjct: 46 SPVKQLAIEHGLPVFQPASLKGPEERERLVALEPDLMVVVAYGLILPTPVLTVPRFGCVN 105
Query: 74 VHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGEL 133
+H S+LPRWRGAAPI AIL GD ETG++++R+ P+ D G ++ + CSI DDT L
Sbjct: 106 IHASLLPRWRGAAPIQRAILAGDRETGVTLMRIEPR-LDAGPMLGKRSCSIGDDDTTASL 164
Query: 134 HNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWN 183
H++LA +G ++L+E + + L Q + TYA KI+ S + +DW
Sbjct: 165 HDRLAGLGAEMLIELLPGLAADRLTGEIQDESQVTYAEKIEKSEARLDWQ 214
>sp|B9JQX1|FMT_AGRVS Methionyl-tRNA formyltransferase OS=Agrobacterium vitis (strain S4
/ ATCC BAA-846) GN=fmt PE=3 SV=1
Length = 320
Score = 118 bits (296), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 115/208 (55%), Gaps = 13/208 (6%)
Query: 48 DIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVR 107
D+ +VV++G L+P I+ LG N H S+LPRWRGAAPI AI+ GD +TG+ ++++
Sbjct: 83 DVAVVVAYGLLLPEAILTGTRLGCYNGHASLLPRWRGAAPIQRAIMAGDVQTGMMVMKMD 142
Query: 108 PKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGA 167
K D G + R +I+PD TAGELH+ L+ +G + ++E + + L AQP++G
Sbjct: 143 -KGLDTGPVALTRRVTITPDMTAGELHDALSQIGAEAMVEAMAKLEAGDLPLTAQPEDGV 201
Query: 168 TYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKV--KLHNISLDTKLRS 225
YA KID + + I+++ + QV+N R L P W + KL I + L S
Sbjct: 202 VYATKIDKAETRINFSK-PATQVHNDIRGL---SPFPGAWFEADINGKLERIKV---LSS 254
Query: 226 DALLRPNTSHVPRDQHSQLTSALSFLSG 253
+T++VP + L AL+ G
Sbjct: 255 QMAEVTDTANVP---GTVLDDALTIACG 279
>sp|B0UWZ4|FMT_HAES2 Methionyl-tRNA formyltransferase OS=Haemophilus somnus (strain
2336) GN=fmt PE=3 SV=1
Length = 317
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 107/182 (58%), Gaps = 7/182 (3%)
Query: 16 EGKHSPVIQFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVH 75
E H PV Q +L + + L K N D+ +VV++G ++P ++ FPLG +NVH
Sbjct: 56 EKHHIPVYQ-----PKSLRKVEVQEHLSKLNADVMVVVAYGLILPLAVLQTFPLGCLNVH 110
Query: 76 GSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHN 135
GS+LPRWRGAAPI AI GD +TG++I+++ + D G+++ + C I+P +T+ L+
Sbjct: 111 GSLLPRWRGAAPIQRAIWAGDKKTGVTIMQMN-EGLDTGDMLHKVCCDITPTETSTSLYT 169
Query: 136 KLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHR 195
KLA + + LLE + + + + A Q + + YA K+ + +DW ++S+ Q+ R
Sbjct: 170 KLANIAPKALLEVLDGLEQGLFKAEVQDESLSNYAEKLSKEEAKLDW-SLSAEQLERCIR 228
Query: 196 AL 197
A
Sbjct: 229 AF 230
>sp|Q8RDM3|FMT_FUSNN Methionyl-tRNA formyltransferase OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=fmt PE=3 SV=2
Length = 310
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 124/223 (55%), Gaps = 16/223 (7%)
Query: 15 KEGKHSPVIQFAQDEKLTLYRWPMDPDLIKDN----------YDIGMVVSFGHLIPSKII 64
K+ +SP+ +FA L +Y+ P+ KDN D+ +VV++G ++P ++I
Sbjct: 40 KKINYSPIKEFALANNLKIYQ----PENFKDNTLIEEIRNMQADLIVVVAYGKILPKEVI 95
Query: 65 NAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSI 124
+ G+IN+H S+LPR+RGAAPI AI++GD ++GISI+ V + D G+++ Q I
Sbjct: 96 DIPKYGVINLHSSLLPRFRGAAPINAAIINGDTKSGISIMYVE-EELDAGDVILQEETEI 154
Query: 125 SPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNT 184
S +DT LH++L +G LLL+ + + + + A Q + T+ IDW T
Sbjct: 155 SDEDTFLSLHDRLKDMGADLLLKAIELIKKGEVKAQKQDKKLVTFVKPFRKEDCKIDW-T 213
Query: 185 MSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLRSDA 227
+S +++N R + + + +G +K++ ++ K+ ++A
Sbjct: 214 KTSREIFNFIRGMNPIPTAFSNLNGTIIKIYETKINDKVYNNA 256
>sp|Q725Q9|FMT_DESVH Methionyl-tRNA formyltransferase OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=fmt PE=3
SV=1
Length = 330
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 106/165 (64%), Gaps = 3/165 (1%)
Query: 34 YRWPMDPDLIKD-NYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAI 92
+R D ++D DI +V ++G ++P +++A P+G +NVHGS+LPR+RGAAPI A+
Sbjct: 72 FRDEADVQALRDFGADILVVAAYGLILPQSVLDAAPMGAVNVHGSLLPRYRGAAPIQRAV 131
Query: 93 LHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDM 152
++GD TGI+I++V K D G ++ Q I D+T+G+LH++LA +GG+LL+E + +
Sbjct: 132 MNGDAVTGITIMQVV-KQLDAGPMLLQKALGIGCDETSGQLHDQLAELGGRLLVETLARL 190
Query: 153 PRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRAL 197
+ Q D ATYA K+ + ++DWN ++V+V+ R +
Sbjct: 191 RAGTIMPIPQDDALATYAAKLTKADGLVDWNR-TAVEVHAQVRGV 234
>sp|A1V9B4|FMT_DESVV Methionyl-tRNA formyltransferase OS=Desulfovibrio vulgaris subsp.
vulgaris (strain DP4) GN=fmt PE=3 SV=1
Length = 330
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 106/165 (64%), Gaps = 3/165 (1%)
Query: 34 YRWPMDPDLIKD-NYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAI 92
+R D ++D DI +V ++G ++P +++A P+G +NVHGS+LPR+RGAAPI A+
Sbjct: 72 FRDEADVQALRDFGADILVVAAYGLILPQSVLDAAPMGAVNVHGSLLPRYRGAAPIQRAV 131
Query: 93 LHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDM 152
++GD TGI+I++V K D G ++ Q I D+T+G+LH++LA +GG+LL+E + +
Sbjct: 132 MNGDAVTGITIMQVV-KQLDAGPMLLQKALGIGCDETSGQLHDQLAELGGRLLVETLARL 190
Query: 153 PRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRAL 197
+ Q D ATYA K+ + ++DWN ++V+V+ R +
Sbjct: 191 RAGTIMPIPQDDALATYAAKLTKADGLVDWNR-TAVEVHAQVRGV 234
>sp|B2T1K6|FMT_BURPP Methionyl-tRNA formyltransferase OS=Burkholderia phytofirmans
(strain DSM 17436 / PsJN) GN=fmt PE=3 SV=1
Length = 328
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 108/186 (58%), Gaps = 16/186 (8%)
Query: 18 KHSPVIQFAQDEKLTLY---------RWPMDPDLIKDN-----YDIGMVVSFGHLIPSKI 63
+ SPV ++AQ+ L + ++P + D +D+ +V ++G ++P ++
Sbjct: 48 QASPVKRYAQEHGLAVAQPPSLRRVGKYPAEAAAAIDQLRATPHDVMVVAAYGLILPQEV 107
Query: 64 INAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCS 123
++ LG IN+H S+LPRWRGAAPI AI GD ETGI+++++ D G ++ + R +
Sbjct: 108 LDIPLLGCINIHASLLPRWRGAAPIHRAIEAGDAETGITLMQMD-VGLDTGAMISEARTA 166
Query: 124 ISPDDTAGELHNKLALVGGQLLLECVRDMPRC-VLNAPAQPDEGATYANKIDWSYSVIDW 182
I+ DDT LH++LA G +L++E + ++ R L A QP EG TYA KI + +DW
Sbjct: 167 ITADDTTATLHDRLAQDGAKLIVEALIELERTGKLAATPQPAEGVTYAEKIGKHEAALDW 226
Query: 183 NTMSSV 188
++V
Sbjct: 227 RRPAAV 232
>sp|Q2T2B1|FMT_BURTA Methionyl-tRNA formyltransferase OS=Burkholderia thailandensis
(strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)
GN=fmt PE=3 SV=1
Length = 328
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Query: 47 YDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRV 106
+D+ +V ++G L+P ++++ G IN+H S+LPRWRGAAPI AI GD ETG++++++
Sbjct: 91 HDVMVVAAYGLLLPQEVLDLPRYGCINIHASLLPRWRGAAPIHRAIEAGDAETGVTLMQM 150
Query: 107 RPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRC-VLNAPAQPDE 165
D G ++ R +I+PDDT LH+KLA G L+++ + ++ R L A QPD+
Sbjct: 151 D-AGLDTGAMLHDARVAIAPDDTTATLHDKLAAAGATLIVDALVELERAGALAATPQPDD 209
Query: 166 GATYANKIDWSYSVIDWNTMSSV 188
G TYA KI + +DW ++V
Sbjct: 210 GITYAEKIGKHEAALDWRKPATV 232
>sp|Q1GDF7|FMT_RUEST Methionyl-tRNA formyltransferase OS=Ruegeria sp. (strain TM1040)
GN=fmt PE=3 SV=1
Length = 308
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 98/165 (59%), Gaps = 7/165 (4%)
Query: 46 NYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIR 105
N D+ +VV++G ++P +++A G +N+H S+LPRWRGAAPI AI+ GD TGI I++
Sbjct: 78 NADVAVVVAYGLILPQAVLDAPRAGCLNIHASLLPRWRGAAPIHRAIMAGDTHTGICIMQ 137
Query: 106 VRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDE 165
+ D G ++ + I ++T LH++L+L+G +++++ + +P L A QP+
Sbjct: 138 ME-AGLDTGPVLLRKETEIGGEETTAALHDRLSLMGARMIVDALATLPD--LKAEPQPEA 194
Query: 166 GATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGV 210
G TYA+KID + + IDW SV + R + + P W V
Sbjct: 195 GVTYASKIDKAEAQIDW----SVAAEEVDRKIRGLSPFPGAWFEV 235
>sp|A0LUE0|FMT_ACIC1 Methionyl-tRNA formyltransferase OS=Acidothermus cellulolyticus
(strain ATCC 43068 / 11B) GN=fmt PE=3 SV=1
Length = 324
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 105/196 (53%), Gaps = 11/196 (5%)
Query: 18 KHSPVIQFAQDEKLTLY--RWPMDPDLIKD----NYDIGMVVSFGHLIPSKIINAFPLGM 71
+ SPV A+ L + R DP+ + N ++ +VV++G L+P + G
Sbjct: 44 RPSPVALAAEQAGLPVLKPRRLADPETLAALRSLNAELAVVVAYGALVPEPALAIPRHGW 103
Query: 72 INVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAG 131
+N+H SILP WRGAAP+ HAILHGD TG + R+ P D G I I PDDTAG
Sbjct: 104 VNLHFSILPSWRGAAPVQHAILHGDEVTGATTFRLEPD-LDTGPIYGTVTEPIRPDDTAG 162
Query: 132 ELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVY 191
+L N+LA G +LLL+ V + VL QP EG +YA KI + + I W++ + +
Sbjct: 163 DLLNRLARTGARLLLDTVDGIAAGVLAPRPQPTEGVSYAPKITPADARISWSSPA----F 218
Query: 192 NLHRALGHVYPLLAQW 207
++ R + V P W
Sbjct: 219 HVDRLIRAVTPEPGAW 234
>sp|B8IFQ3|FMT_METNO Methionyl-tRNA formyltransferase OS=Methylobacterium nodulans
(strain ORS2060 / LMG 21967) GN=fmt PE=3 SV=1
Length = 310
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 87/137 (63%), Gaps = 1/137 (0%)
Query: 46 NYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIR 105
+ D+ +VV++G ++P I++A LG +N+H SILPRWRGAAPI A++ GD ETG++++R
Sbjct: 80 DADVAVVVAYGMILPPAILDAPRLGCLNLHASILPRWRGAAPIQRAVMAGDSETGVAVMR 139
Query: 106 VRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDE 165
+ P D G + R +I+P+ TAGELH++L +G L+ + + R L Q E
Sbjct: 140 MEPG-LDTGPVAMLERVAITPEMTAGELHDRLMPLGADLMNRALGALERGGLTFTPQAAE 198
Query: 166 GATYANKIDWSYSVIDW 182
G YA+KI + +DW
Sbjct: 199 GIVYAHKITNEEARLDW 215
>sp|Q8EKQ9|FMT_SHEON Methionyl-tRNA formyltransferase OS=Shewanella oneidensis (strain
MR-1) GN=fmt PE=3 SV=1
Length = 318
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 103/184 (55%), Gaps = 8/184 (4%)
Query: 20 SPVIQFAQDEKLTLY------RWPMDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMIN 73
SPV + A + +Y + P +L N DI +VV++G ++P +++ LG IN
Sbjct: 49 SPVKELALSHSIPVYQPGSLRKEPAQQELASLNADIMVVVAYGLILPKVVLDTPRLGCIN 108
Query: 74 VHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGEL 133
VHGSILPRWRGAAPI A+ GD ETG++I+++ D G+++ + I DDT+ L
Sbjct: 109 VHGSILPRWRGAAPIQRALWAGDKETGVTIMQMD-VGLDTGDMLLKTYLPIEDDDTSASL 167
Query: 134 HNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNL 193
+ KLAL G LL+ + + L A Q + A YA K+ + +DW T S+ Q++
Sbjct: 168 YEKLALQGPDALLQALEGLANGTLAAEKQDETLANYAEKLSKEEARLDW-TKSATQLWQE 226
Query: 194 HRAL 197
RA
Sbjct: 227 VRAF 230
>sp|B9DPM5|FMT_STACT Methionyl-tRNA formyltransferase OS=Staphylococcus carnosus (strain
TM300) GN=fmt PE=3 SV=1
Length = 310
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 38 MDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDH 97
M+PDLI + +FG ++P +++A LG INVH S+LP++RG API AI+ G+
Sbjct: 77 MEPDLI-------VTAAFGQILPKSLLDAPKLGAINVHASLLPKYRGGAPIHQAIIDGEK 129
Query: 98 ETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVL 157
ETG++I+ + PK D G+I+ Q I +D +H+KL+ +G LL + + ++
Sbjct: 130 ETGVTIMYMAPK-LDAGDIISQQAIEIEANDNVESMHDKLSFLGADLLKKTLPEIINGTN 188
Query: 158 NAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRAL 197
+ AQ D+ AT+A+ I IDW T S+ QVYN R L
Sbjct: 189 DRIAQDDDKATFASNISREDERIDW-TQSAEQVYNHIRGL 227
>sp|Q5LNI8|FMT_RUEPO Methionyl-tRNA formyltransferase OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=fmt PE=3 SV=1
Length = 301
Score = 115 bits (287), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 102/180 (56%), Gaps = 4/180 (2%)
Query: 41 DLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETG 100
D D+ +VV++G ++P +++A G +N+H S+LPRWRGAAPI AI+ GD TG
Sbjct: 73 DFAALGADVAVVVAYGLILPQAVLDAPRHGCLNIHASLLPRWRGAAPIHRAIMAGDEATG 132
Query: 101 ISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAP 160
I I+++ D G ++ + R I ++T G LH++L+ +G L++E + +P L
Sbjct: 133 ICIMQME-AGLDTGPVLLRSRTPIRAEETTGALHDRLSAMGADLIVEALARLPE--LTPE 189
Query: 161 AQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLD 220
QP++G TYA KID + + +DW T +V + R L + G +VKL LD
Sbjct: 190 PQPEDGVTYAAKIDKAEARVDW-TRPAVAIDRQIRGLSPFPGAWTEIAGERVKLLASRLD 248
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,421,885
Number of Sequences: 539616
Number of extensions: 6927580
Number of successful extensions: 20965
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 19165
Number of HSP's gapped (non-prelim): 984
length of query: 412
length of database: 191,569,459
effective HSP length: 120
effective length of query: 292
effective length of database: 126,815,539
effective search space: 37030137388
effective search space used: 37030137388
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)