Query psy17704
Match_columns 412
No_of_seqs 285 out of 1946
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 20:53:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0223 Fmt Methionyl-tRNA for 100.0 5E-70 1.1E-74 538.8 28.8 263 6-388 25-302 (307)
2 TIGR00460 fmt methionyl-tRNA f 100.0 2.1E-63 4.5E-68 493.8 32.7 269 7-393 25-308 (313)
3 PLN02285 methionyl-tRNA formyl 100.0 1.9E-61 4.1E-66 484.2 31.0 268 6-391 36-333 (334)
4 PRK06988 putative formyltransf 100.0 4.6E-61 1E-65 477.1 31.4 265 9-389 29-308 (312)
5 PRK00005 fmt methionyl-tRNA fo 100.0 7.4E-61 1.6E-65 474.3 31.6 266 7-391 25-304 (309)
6 PRK08125 bifunctional UDP-gluc 100.0 1.8E-57 4E-62 488.7 32.8 262 9-391 27-300 (660)
7 PRK07579 hypothetical protein; 100.0 4.5E-45 9.7E-50 351.6 19.1 167 45-215 64-234 (245)
8 KOG3082|consensus 100.0 8.4E-44 1.8E-48 347.0 10.7 276 19-401 50-337 (338)
9 TIGR00639 PurN phosphoribosylg 100.0 2.4E-35 5.1E-40 274.9 18.9 154 2-157 23-189 (190)
10 PRK05647 purN phosphoribosylgl 100.0 2.3E-35 4.9E-40 276.9 17.7 154 3-158 25-191 (200)
11 PLN02331 phosphoribosylglycina 100.0 5.4E-34 1.2E-38 269.2 18.8 155 2-158 22-194 (207)
12 KOG2452|consensus 100.0 6.9E-34 1.5E-38 289.8 14.0 209 9-219 27-249 (881)
13 PRK06027 purU formyltetrahydro 100.0 6.7E-33 1.5E-37 273.0 17.2 152 2-157 112-275 (286)
14 PF00551 Formyl_trans_N: Formy 100.0 2.3E-32 5E-37 251.5 16.0 140 7-149 29-181 (181)
15 PRK13011 formyltetrahydrofolat 100.0 3.1E-32 6.7E-37 268.4 17.7 152 2-157 112-275 (286)
16 TIGR00655 PurU formyltetrahydr 100.0 5.1E-32 1.1E-36 266.1 17.6 152 2-157 107-270 (280)
17 PLN02828 formyltetrahydrofolat 100.0 9.6E-32 2.1E-36 262.5 18.4 154 1-156 92-256 (268)
18 PRK13010 purU formyltetrahydro 100.0 8.2E-32 1.8E-36 265.8 17.6 152 2-157 116-279 (289)
19 COG0299 PurN Folate-dependent 100.0 1E-28 2.2E-33 230.0 16.2 156 2-159 23-191 (200)
20 KOG3076|consensus 99.9 5.8E-25 1.2E-29 203.2 14.7 157 2-160 29-200 (206)
21 PF02911 Formyl_trans_C: Formy 99.9 4.8E-23 1E-27 170.8 9.6 100 172-388 1-100 (100)
22 COG0788 PurU Formyltetrahydrof 99.8 2.4E-20 5.3E-25 180.5 13.9 151 1-155 112-274 (287)
23 PF00185 OTCace: Aspartate/orn 65.7 12 0.00026 34.0 5.1 58 24-84 52-125 (158)
24 PLN02342 ornithine carbamoyltr 52.9 45 0.00098 34.6 7.2 61 21-85 234-313 (348)
25 PRK13365 protocatechuate 4,5-d 45.1 25 0.00055 35.1 3.9 74 41-116 43-128 (279)
26 cd07364 PCA_45_Dioxygenase_B S 39.4 31 0.00067 34.4 3.5 74 41-115 43-127 (277)
27 PRK04284 ornithine carbamoyltr 34.3 1.5E+02 0.0032 30.5 7.6 59 24-85 203-280 (332)
28 PRK02255 putrescine carbamoylt 33.9 1.3E+02 0.0028 31.1 7.0 27 57-85 252-278 (338)
29 PF01976 DUF116: Protein of un 33.6 39 0.00084 31.1 2.9 58 20-77 76-142 (158)
30 TIGR00658 orni_carb_tr ornithi 33.5 1.5E+02 0.0034 29.9 7.5 56 26-84 197-269 (304)
31 PRK13366 protocatechuate 4,5-d 33.0 42 0.00092 33.7 3.3 75 41-116 43-128 (284)
32 PRK01713 ornithine carbamoyltr 30.1 1.8E+02 0.0039 29.9 7.4 59 24-85 204-281 (334)
33 COG2266 GTP:adenosylcobinamide 30.1 63 0.0014 30.6 3.7 114 5-134 40-161 (177)
34 PRK14805 ornithine carbamoyltr 27.3 2.2E+02 0.0048 28.8 7.4 57 24-85 194-267 (302)
35 PF00023 Ank: Ankyrin repeat H 26.4 50 0.0011 21.6 1.8 14 84-97 2-15 (33)
36 PRK13376 pyrB bifunctional asp 25.9 1.8E+02 0.0039 32.0 6.8 28 56-85 272-299 (525)
37 cd07368 PhnC_Bs_like PhnC is a 25.1 61 0.0013 32.2 2.9 74 41-115 41-124 (277)
38 PRK00779 ornithine carbamoyltr 24.6 2.8E+02 0.0061 28.0 7.5 56 26-85 198-271 (304)
39 KOG3082|consensus 23.9 23 0.0005 36.4 -0.4 34 166-199 220-253 (338)
40 cd07950 Gallate_Doxase_N The N 23.7 83 0.0018 31.4 3.5 75 41-116 43-128 (277)
41 PF13606 Ank_3: Ankyrin repeat 22.5 61 0.0013 21.3 1.6 14 84-97 2-15 (30)
42 PRK03515 ornithine carbamoyltr 22.3 3.1E+02 0.0066 28.3 7.4 59 24-85 204-281 (336)
43 PRK13600 putative ribosomal pr 22.0 64 0.0014 26.9 1.9 30 20-49 45-75 (84)
44 TIGR00670 asp_carb_tr aspartat 21.6 3.1E+02 0.0068 27.7 7.2 73 8-85 178-267 (301)
45 PRK13372 pcmA protocatechuate 21.6 73 0.0016 34.3 2.8 73 41-114 190-273 (444)
46 PRK13367 protocatechuate 4,5-d 20.5 88 0.0019 33.4 3.1 76 41-117 43-129 (420)
No 1
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-70 Score=538.83 Aligned_cols=263 Identities=37% Similarity=0.578 Sum_probs=244.4
Q ss_pred eeeEEEEecCC---CC-----CchHHHHHHHCCCcEEEcCCC-------ccccccCCcEEEEccCcccCChhHHhcCCCC
Q psy17704 6 ISKLEVVSSKE---GK-----HSPVIQFAQDEKLTLYRWPMD-------PDLIKDNYDIGMVVSFGHLIPSKIINAFPLG 70 (412)
Q Consensus 6 i~~i~VVt~~~---gk-----~spVk~~A~e~GIpV~~~p~~-------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G 70 (412)
.+-+.|||+|| || ++||+++|.++||||++ |++ +.+++++||++||++||+|||+++|+.+++|
T Consensus 25 ~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~q-P~~l~~~e~~~~l~~l~~D~ivvvayG~ilp~~iL~~~~~G 103 (307)
T COG0223 25 HEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQ-PEKLNDPEFLEELAALDPDLIVVVAYGQILPKEILDLPPYG 103 (307)
T ss_pred CceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceec-cccCCcHHHHHHHhccCCCEEEEEehhhhCCHHHHhcCcCC
Confidence 35688999998 33 69999999999999999 653 2367789999999999999999999999999
Q ss_pred eEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy17704 71 MINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVR 150 (412)
Q Consensus 71 ~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L~ 150 (412)
|||+||||||+|||++||||||+|||++||||+|+|++ +||+|||++|++++|.++||+++|++||+..|+++|.++|.
T Consensus 104 ~iNvH~SLLPr~RGaAPIq~aI~~Gd~~TGvTim~M~~-~lDaG~Il~q~~~~I~~~dta~~L~~kLa~~ga~lL~~~L~ 182 (307)
T COG0223 104 CINLHPSLLPRYRGAAPIQWAILNGDTETGVTIMQMDE-GLDAGDILAQREVPIEPDDTAGSLHDKLAELGAELLLETLP 182 (307)
T ss_pred eEEecCccCccccCccHHHHHHHcCCcccceEEEEccc-cCCCcceeeeEEeccCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997 69999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCCccccCCCccccccccCCCCHHHHHHHHhccCCCCCceEEEcCeEEEEEEEEeccccccccccC
Q psy17704 151 DMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLRSDALLR 230 (412)
Q Consensus 151 ~l~~G~~~~~pQd~~~aTYa~Ki~keD~~IDW~~~sA~~I~n~IRA~~p~ppa~t~~~Gk~ikI~~a~~~~~~~~~~~~~ 230 (412)
.+.+|.+.+++|+++++||++|++++|++|||+ ++|.+|+|+||||+|||+||++++|+++|||++++.+.
T Consensus 183 ~i~~g~~~~~~Q~e~~~tya~ki~ked~~Idw~-~~a~~i~n~IRa~~P~Pga~~~~~~~~iki~~a~~~~~-------- 253 (307)
T COG0223 183 QLEAGTLTPIPQDEEEATYAPKITKEDGRIDWS-KPAAQILNKIRAFNPWPGAWTELGGKRIKIWEARVLEG-------- 253 (307)
T ss_pred HHhcCCCCCCCCCcccCccccCCCHHHcccCCc-cCHHHHHHHHhccCCCCceEEEECCeEEEEEEEEEccc--------
Confidence 999999999999999999999999999999998 79999999999999999999999999999999997653
Q ss_pred CCCCCCCCCcccccccccccccCCcccceecceeeeeecccccccccccccCCCCCCCCCCccccchhhhhccccCCCCC
Q psy17704 231 PNTSHVPRDQHSQLTSALSFLSGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRPNTSHVPRDQHSQLTSALSFLSGDTSS 310 (412)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (412)
+
T Consensus 254 ---~---------------------------------------------------------------------------- 254 (307)
T COG0223 254 ---A---------------------------------------------------------------------------- 254 (307)
T ss_pred ---c----------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEeCCCeEEEEecCCCeEEEeeeecCCCCCCCHHHHHccCC
Q psy17704 311 KPPSETKEPPERSKEPTDRLTEEPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYL 388 (412)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~~~~~~l~v~~~~g~~~~~~~~q~~gkk~~~a~~f~~g~~ 388 (412)
....||+|....+ +.|.|+|++| .|.+.++|++|||+|++.||+||.+
T Consensus 255 ----------------------------~~~~pG~i~~~~~-~~l~Va~~~g-~l~l~~lQ~~gkk~~~~~~~l~g~~ 302 (307)
T COG0223 255 ----------------------------SNGKPGEILAADK-KGLLVACGDG-ALRLTELQPAGKKAMSAADFLNGRR 302 (307)
T ss_pred ----------------------------ccCCCcceEEecC-CcEEEEeCCc-eEEEEeeccCCCCCCCHHHHhcccc
Confidence 0136899986554 6799999998 8999999999999999999999987
No 2
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=100.00 E-value=2.1e-63 Score=493.77 Aligned_cols=269 Identities=35% Similarity=0.564 Sum_probs=243.2
Q ss_pred eeEEEEecCC---CC-----CchHHHHHHHCCCcEEEcCCCc------cccccCCcEEEEccCcccCChhHHhcCCCCeE
Q psy17704 7 SKLEVVSSKE---GK-----HSPVIQFAQDEKLTLYRWPMDP------DLIKDNYDIGMVVSFGHLIPSKIINAFPLGMI 72 (412)
Q Consensus 7 ~~i~VVt~~~---gk-----~spVk~~A~e~GIpV~~~p~~~------~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~I 72 (412)
.-+.|||.++ |+ .++|+++|+++||||++..... .+++.++|++||++|++|||+++|+.+++|+|
T Consensus 25 ~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~i 104 (313)
T TIGR00460 25 EVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPLVRELKPDVIVVVSFGKILPKEFLDLFPYGCI 104 (313)
T ss_pred cEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHHHHHHHHhhCCCEEEEccchhhCCHHHHhhccCCEE
Confidence 4467899886 22 5889999999999999944321 25678999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q psy17704 73 NVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDM 152 (412)
Q Consensus 73 NiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L~~l 152 (412)
|+|||+||+|||++|++|||+||+++||||+|+|++ ++|+|||++|+.++|.+++|+.+|++|++.+++++|.++|..+
T Consensus 105 NiHpSlLP~yRG~~pi~wai~~G~~~tGvTih~~~~-~~D~G~Ii~q~~~~I~~~~t~~~l~~~l~~~~~~ll~~~l~~l 183 (313)
T TIGR00460 105 NVHPSLLPRWRGGAPIQRAILNGDKKTGVTIMQMVP-KMDAGDILKQETFPIEEEDNSGTLSDKLSELGAQLLIETLKEL 183 (313)
T ss_pred EecCccccCCCCccHHHHHHHCCCCeEEEEEEEEcc-ccCCCCeEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997 6999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccccCCCccccccccCCCCHHHHHHHHhccCCCCCceEEEcCeEEEEEEEEeccccccccccCCC
Q psy17704 153 PRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLRSDALLRPN 232 (412)
Q Consensus 153 ~~G~~~~~pQd~~~aTYa~Ki~keD~~IDW~~~sA~~I~n~IRA~~p~ppa~t~~~Gk~ikI~~a~~~~~~~~~~~~~~~ 232 (412)
.+|...++||+++.+||++|++++|+.|||+ ++|++|+|+|||++|||+||++++|++++|++++....
T Consensus 184 ~~~~~~~~~Q~~~~~ty~~k~~~~d~~Idw~-~~a~~I~~~iRA~~p~pga~~~~~g~~i~i~~a~~~~~---------- 252 (313)
T TIGR00460 184 PEGKNKPEPQDAEEATYAPKISKEQERIDWN-QSAEELLNKIRALNPWPTAWLTFEGKNIKIHKAKVIDL---------- 252 (313)
T ss_pred HcCCCCcccCCCCCceECCCCCHHHeeECcc-CCHHHHHHHHhccCCCCceEEEECCEEEEEEEEEEccC----------
Confidence 9999889999999999999999999999998 89999999999999999999999999999999886432
Q ss_pred CCCCCCCcccccccccccccCCcccceecceeeeeecccccccccccccCCCCCCCCCCccccchhhhhccccCCCCCCC
Q psy17704 233 TSHVPRDQHSQLTSALSFLSGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRPNTSHVPRDQHSQLTSALSFLSGDTSSKP 312 (412)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (412)
.
T Consensus 253 -~------------------------------------------------------------------------------ 253 (313)
T TIGR00460 253 -S------------------------------------------------------------------------------ 253 (313)
T ss_pred -C------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEeCCCeEEEEec-CCCeEEEeeeecCCCCCCCHHHHHccCCCCC
Q psy17704 313 PSETKEPPERSKEPTDRLTEEPNPIVPELTPGFVSFDRGSKLLRVRCV-DGKSILCSQITVAGKKKMTAVDFKNGYLGKV 391 (412)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~~~~~~l~v~~~-~g~~~~~~~~q~~gkk~~~a~~f~~g~~~~~ 391 (412)
....+||+|++..+ +.++|+|+ || +|.|.++|++|||+|+|.||+|||+.++
T Consensus 254 -------------------------~~~~~pG~v~~~~~-~~~~V~~~~dg-~l~i~~lq~~Gkk~~~a~~f~~g~~~~~ 306 (313)
T TIGR00460 254 -------------------------TYKAKPGEIVYHNK-KGILVACGKDG-ILLLLSLQPPGKKVMRAEDFYNGSRHPW 306 (313)
T ss_pred -------------------------CCCCCCCEEEEeCC-CeEEEEEcCCC-EEEEEEEeCCCCCcCcHHHHHcCCCCcc
Confidence 00125899987554 47999999 77 8999999999999999999999998877
Q ss_pred CC
Q psy17704 392 KN 393 (412)
Q Consensus 392 ~~ 393 (412)
.+
T Consensus 307 ~~ 308 (313)
T TIGR00460 307 YV 308 (313)
T ss_pred cc
Confidence 64
No 3
>PLN02285 methionyl-tRNA formyltransferase
Probab=100.00 E-value=1.9e-61 Score=484.23 Aligned_cols=268 Identities=29% Similarity=0.387 Sum_probs=235.0
Q ss_pred eeeEEEEecCC---C-----CCchHHHHHHHCCCc---EEEcCCC-------ccccccCCcEEEEccCcccCChhHHhcC
Q psy17704 6 ISKLEVVSSKE---G-----KHSPVIQFAQDEKLT---LYRWPMD-------PDLIKDNYDIGMVVSFGHLIPSKIINAF 67 (412)
Q Consensus 6 i~~i~VVt~~~---g-----k~spVk~~A~e~GIp---V~~~p~~-------~~l~~~~pDliVvv~fg~IIp~~iL~~~ 67 (412)
++-+.|||.++ | .++||+++|+++||| |++ +.. ..+++.+||++|+++|++|||+++|+.+
T Consensus 36 ~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~-~~~~~~~~~~~~l~~~~~Dliv~~~~~~ilp~~~l~~~ 114 (334)
T PLN02285 36 FEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFT-PEKAGEEDFLSALRELQPDLCITAAYGNILPQKFLDIP 114 (334)
T ss_pred CeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecC-ccccCCHHHHHHHHhhCCCEEEhhHhhhhcCHHHHhhc
Confidence 34567888886 2 257999999999999 665 432 1366889999999999999999999999
Q ss_pred CCCeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy17704 68 PLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLE 147 (412)
Q Consensus 68 ~~G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e 147 (412)
++||||+||||||+|||++|++|||++|+++||||+|+|++ ++|+|||++|+.++|.++||+.+|++|++.+++++|.+
T Consensus 115 ~~g~iNiHpSLLP~yRG~~pi~~ai~~G~~~tGvTih~~~~-~~D~G~Ii~q~~~~I~~~dt~~~L~~kl~~~~~~ll~~ 193 (334)
T PLN02285 115 KLGTVNIHPSLLPLYRGAAPVQRALQDGVNETGVSVAFTVR-ALDAGPVIAQERVEVDEDIKAPELLPLLFELGTKLLLR 193 (334)
T ss_pred cCCEEEEecccccCCCCcCHHHHHHHcCCCcEEEEEEEECC-CccCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997 69999999999999999999999999999999999999
Q ss_pred HHHhcCCCC--CCCCCCCCCCCccccCCCccccccccCCCCHHHHHHHHhccCCCCCceEEEc------C----eEEEEE
Q psy17704 148 CVRDMPRCV--LNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWH------G----VKVKLH 215 (412)
Q Consensus 148 ~L~~l~~G~--~~~~pQd~~~aTYa~Ki~keD~~IDW~~~sA~~I~n~IRA~~p~ppa~t~~~------G----k~ikI~ 215 (412)
+|..+.+|. ..++||+++.+||++|++++|+.|||+ ++|++|+|+|||++|||++|++++ | +++||+
T Consensus 194 ~l~~l~~~~~~~~~~~Q~~~~atya~k~~~~d~~Idw~-~~a~~I~~~iRa~~p~Pga~~~~~~~~~~~~~~~~~~iki~ 272 (334)
T PLN02285 194 ELPSVLDGSAKDKATPQDDSKATHAPKISPEESWLSFD-EEARVLHNKVRAFAGWPGTRAKFQLVDDGDGEREVLELKII 272 (334)
T ss_pred HHHHHHcCCCCCcccCCCCCCceECCCCCHHHeEEcCC-CCHHHHHHHHhcCCCCCcEEEEEccccccCCcccceeEEEE
Confidence 999998876 678999999999999999999999996 899999999999999999999885 5 389998
Q ss_pred EEEeccccccccccCCCCCCCCCCcccccccccccccCCcccceecceeeeeecccccccccccccCCCCCCCCCCcccc
Q psy17704 216 NISLDTKLRSDALLRPNTSHVPRDQHSQLTSALSFLSGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRPNTSHVPRDQHS 295 (412)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (412)
+++..+. .
T Consensus 273 ~~~~~~~-----------~------------------------------------------------------------- 280 (334)
T PLN02285 273 TTRVCEA-----------G------------------------------------------------------------- 280 (334)
T ss_pred EEEEecc-----------c-------------------------------------------------------------
Confidence 8765321 0
Q ss_pred chhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEeCCCeEEEEecCCCeEEEeeeecCCC
Q psy17704 296 QLTSALSFLSGDTSSKPPSETKEPPERSKEPTDRLTEEPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGK 375 (412)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~~~~~~l~v~~~~g~~~~~~~~q~~gk 375 (412)
. ....+||++.++ .++|.|+|+||.+|.+.+||++||
T Consensus 281 -~----------------------------------------~~~~~~g~~~~~--~~~l~V~c~dg~~l~i~~lq~~Gk 317 (334)
T PLN02285 281 -G----------------------------------------EQTGSADAVTFK--KDSLLVPCGGGTWLEVLEVQPPGK 317 (334)
T ss_pred -c----------------------------------------ccCCCCcEEEEe--CCeEEEEeCCCCEEEEEEEECCCC
Confidence 0 001247887654 357999999996699999999999
Q ss_pred CCCCHHHHHccCCCCC
Q psy17704 376 KKMTAVDFKNGYLGKV 391 (412)
Q Consensus 376 k~~~a~~f~~g~~~~~ 391 (412)
|.|++.||+||++++.
T Consensus 318 k~m~~~~f~~G~~~~~ 333 (334)
T PLN02285 318 KVMKAKDFWNGLRGQT 333 (334)
T ss_pred CCCcHHHHhcCCCCCC
Confidence 9999999999998763
No 4
>PRK06988 putative formyltransferase; Provisional
Probab=100.00 E-value=4.6e-61 Score=477.14 Aligned_cols=265 Identities=23% Similarity=0.348 Sum_probs=235.6
Q ss_pred EEEEecCCCC-----CchHHHHHHHCCCcEEEcCCC------ccccccCCcEEEEccCcccCChhHHhcCCCCeEEEcCC
Q psy17704 9 LEVVSSKEGK-----HSPVIQFAQDEKLTLYRWPMD------PDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGS 77 (412)
Q Consensus 9 i~VVt~~~gk-----~spVk~~A~e~GIpV~~~p~~------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~INiHpS 77 (412)
+.|||.++.. .++|+++|+++|||+++..+. +.+++.+||++|+++|++|||+++|+.+++|+||+|||
T Consensus 29 ~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHps 108 (312)
T PRK06988 29 ALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPNDPELRAAVAAAAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGS 108 (312)
T ss_pred EEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCCCHHHHHHHHhcCCCEEEEehhccccCHHHHhcCCCCEEEeeCc
Confidence 5678887621 469999999999999983221 13567899999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy17704 78 ILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVL 157 (412)
Q Consensus 78 LLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L~~l~~G~~ 157 (412)
+||+|||++|++|||+||+++||||+|+|++ ++|+|||++|+.++|.++||+.+|++|+..+++++|.++|..+..|++
T Consensus 109 lLP~yRG~~pi~~ai~~g~~~tGvTih~~~~-~~D~G~Il~q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~ 187 (312)
T PRK06988 109 LLPKYRGRVPVNWAVLNGETETGATLHEMVA-KPDAGAIVDQTAVPILPDDTAAQVFDKVTVAAEQTLWRVLPALLAGEA 187 (312)
T ss_pred cccCCCCcCHHHHHHHcCCCceEEEEEEECC-CCCCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999997 699999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCccccCCCccccccccCCCCHHHHHHHHhccC-CCCCceEEEcCeEEEEEEEEeccccccccccCCCCCCC
Q psy17704 158 NAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALG-HVYPLLAQWHGVKVKLHNISLDTKLRSDALLRPNTSHV 236 (412)
Q Consensus 158 ~~~pQd~~~aTYa~Ki~keD~~IDW~~~sA~~I~n~IRA~~-p~ppa~t~~~Gk~ikI~~a~~~~~~~~~~~~~~~~~~~ 236 (412)
+++||+++.+||++|++++|+.|||+ ++|++|+|+||||+ ||||||++++|++++|+++++.... .
T Consensus 188 ~~~~Q~~~~aty~~k~~~~d~~Idw~-~~a~~I~~~iRA~~~p~pga~~~~~g~~v~i~~a~~~~~~----------~-- 254 (312)
T PRK06988 188 PHLPNDLAQGSYFGGRKPEDGRIDWS-KPAAQVYNLIRAVAPPYPGAFTDLGGTRFVVARARLAAPG----------A-- 254 (312)
T ss_pred CcccCCCCCceECCCCChHHeEECCC-CCHHHHHHHhccCCCCCCeeEEEECCEEEEEEEEEEccCC----------c--
Confidence 89999999999999999999999998 89999999999997 8899999999999999998864320 0
Q ss_pred CCCcccccccccccccCCcccceecceeeeeecccccccccccccCCCCCCCCCCccccchhhhhccccCCCCCCCCCCC
Q psy17704 237 PRDQHSQLTSALSFLSGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRPNTSHVPRDQHSQLTSALSFLSGDTSSKPPSET 316 (412)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (412)
.
T Consensus 255 --------------------------------------------------------------------~----------- 255 (312)
T PRK06988 255 --------------------------------------------------------------------A----------- 255 (312)
T ss_pred --------------------------------------------------------------------c-----------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEeCCCeEEEEecCCC---eEEEeeeecCCCCCCCHHHHHccCCC
Q psy17704 317 KEPPERSKEPTDRLTEEPNPIVPELTPGFVSFDRGSKLLRVRCVDGK---SILCSQITVAGKKKMTAVDFKNGYLG 389 (412)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~~~~~~l~v~~~~g~---~~~~~~~q~~gkk~~~a~~f~~g~~~ 389 (412)
......||+|+ . +++++|+|+||. .+.+.++|++|||+|++.||+||+..
T Consensus 256 --------------------~~~~~~pG~i~-~--~~~l~V~c~dg~~v~~l~i~~~q~~gkk~~~~~~f~~~~~~ 308 (312)
T PRK06988 256 --------------------AARDLPPGLHV-S--DNALFGVCGDGRAVSILELRRQQDGGETVVTPAQFAQFIHS 308 (312)
T ss_pred --------------------cccCCCCCEEE-E--CCCEEEECCCCCCcceEEEEEEEcCCCCcCCHHHHhhhccc
Confidence 00023589986 3 357999999995 68899999999999999999999874
No 5
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=100.00 E-value=7.4e-61 Score=474.35 Aligned_cols=266 Identities=33% Similarity=0.530 Sum_probs=239.8
Q ss_pred eeEEEEecCC---CC-----CchHHHHHHHCCCcEEEcCCC------ccccccCCcEEEEccCcccCChhHHhcCCCCeE
Q psy17704 7 SKLEVVSSKE---GK-----HSPVIQFAQDEKLTLYRWPMD------PDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMI 72 (412)
Q Consensus 7 ~~i~VVt~~~---gk-----~spVk~~A~e~GIpV~~~p~~------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~I 72 (412)
.-+.|||.++ |+ .++|+++|+++|||+++.... +.+++.+||++|+++|++|||+++|+.+++|+|
T Consensus 25 ~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~i 104 (309)
T PRK00005 25 EVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEKLRDPEFLAELAALNADVIVVVAYGQILPKAVLDIPRLGCI 104 (309)
T ss_pred cEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCCCCCHHHHHHHHhcCcCEEEEehhhcccCHHHHhcCCCCEE
Confidence 3467888876 22 579999999999999984331 135678999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q psy17704 73 NVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDM 152 (412)
Q Consensus 73 NiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L~~l 152 (412)
|+|||+||+|||++|++|||+||++++|||+|+|++ ++|+|||++|+.++|.++||+.+|++|+..++.+++.++|..+
T Consensus 105 NiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~-~~D~G~Ii~q~~~~i~~~dt~~~L~~kl~~~~~~ll~~~i~~l 183 (309)
T PRK00005 105 NLHASLLPRWRGAAPIQRAIIAGDAETGVTIMQMDE-GLDTGDMLLKAEVPITPTDTAGELHDKLAELGADLLVETLKGL 183 (309)
T ss_pred EEeCcccccCCCccHHHHHHHcCCCeEEEEEEEECC-cccCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997 7999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccccCCCccccccccCCCCHHHHHHHHhccCCCCCceEEEcCeEEEEEEEEeccccccccccCCC
Q psy17704 153 PRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLRSDALLRPN 232 (412)
Q Consensus 153 ~~G~~~~~pQd~~~aTYa~Ki~keD~~IDW~~~sA~~I~n~IRA~~p~ppa~t~~~Gk~ikI~~a~~~~~~~~~~~~~~~ 232 (412)
.+|.+++++|+++.+||++|++++|+.|||+ ++|++|+|+|||++|+||||++++|++++|++++..+.
T Consensus 184 ~~g~~~~~~Q~~~~~ty~~k~~~~d~~Idw~-~~a~~I~~~iRA~~p~pga~~~~~g~~v~i~~a~~~~~---------- 252 (309)
T PRK00005 184 EDGTLTPIPQDEEGVTYAPKISKEEARIDWS-KPAAELENHIRGFNPWPGAWTELDGQRLKILEAELVEA---------- 252 (309)
T ss_pred HhCCCceecCCCCCceECCCCCHHHeeEcCC-CCHHHHHHHHhcCCCCCceEEEECCEEEEEEEEEEccC----------
Confidence 9999999999999999999999999999998 79999999999999999999999999999999875432
Q ss_pred CCCCCCCcccccccccccccCCcccceecceeeeeecccccccccccccCCCCCCCCCCccccchhhhhccccCCCCCCC
Q psy17704 233 TSHVPRDQHSQLTSALSFLSGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRPNTSHVPRDQHSQLTSALSFLSGDTSSKP 312 (412)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (412)
T Consensus 253 -------------------------------------------------------------------------------- 252 (309)
T PRK00005 253 -------------------------------------------------------------------------------- 252 (309)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEeCCCeEEEEecCCCeEEEeeeecCCCCCCCHHHHHccCCCCC
Q psy17704 313 PSETKEPPERSKEPTDRLTEEPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKV 391 (412)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~~~~~~l~v~~~~g~~~~~~~~q~~gkk~~~a~~f~~g~~~~~ 391 (412)
.....||+|+...+ +.++|+|+|| .|.|.++|++|||.|++.+|+||++.++
T Consensus 253 -------------------------~~~~~pG~i~~~~~-~~~~V~~~dg-~l~i~~l~~~g~k~~~~~~f~~g~~~~~ 304 (309)
T PRK00005 253 -------------------------SGSGAPGTILAIDK-DGIVVATGEG-ALRLTQLQPPGKKPMSAADFLNGRRLEV 304 (309)
T ss_pred -------------------------CCCCCCCEEEEecC-CeEEEEECCe-eEEEEEEECCCCCcccHHHHhcCCCCCC
Confidence 00125899985443 4799999999 8999999999999999999999986443
No 6
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=100.00 E-value=1.8e-57 Score=488.71 Aligned_cols=262 Identities=24% Similarity=0.332 Sum_probs=237.3
Q ss_pred EEEEecCCC-----CCchHHHHHHHCCCcEEEcCCC------ccccccCCcEEEEccCcccCChhHHhcCCCCeEEEcCC
Q psy17704 9 LEVVSSKEG-----KHSPVIQFAQDEKLTLYRWPMD------PDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGS 77 (412)
Q Consensus 9 i~VVt~~~g-----k~spVk~~A~e~GIpV~~~p~~------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~INiHpS 77 (412)
+.|||.|+. ..++|+++|+++|||+++.... +.+++.+||++||++|++|||+++|+.+++|+||+|||
T Consensus 27 ~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~~~~~~~~~l~~~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~s 106 (660)
T PRK08125 27 AAVFTHTDNPGENHFFGSVARLAAELGIPVYAPEDVNHPLWVERIRELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGS 106 (660)
T ss_pred EEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCCCCcHHHHHHHHhcCCCEEEEccccccCCHHHHhhcCCCEEEEeCC
Confidence 458888872 2568999999999999984432 12677899999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy17704 78 ILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVL 157 (412)
Q Consensus 78 LLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L~~l~~G~~ 157 (412)
+||+|||++|++|||+|||++||||+|+|++ ++|+|||+.|+.++|.++||+.+|++|+..++.++|.++|+.|.+|.+
T Consensus 107 lLP~yRG~~p~~wai~~g~~~~GvTi~~~~~-~~D~G~I~~q~~~~i~~~dt~~~l~~~l~~~~~~l~~~~l~~i~~~~~ 185 (660)
T PRK08125 107 LLPKYRGRAPLNWVLVNGETETGVTLHRMVK-RADAGAIVAQQRVAIAPDDTALTLHHKLCHAARQLLEQTLPAIKHGNI 185 (660)
T ss_pred cccCCCCcCHHHHHHHcCCCcEEEEEEEECC-CccCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999997 799999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccCCCccccccccCCCCHHHHHHHHhccC-CCCCceEEEcCeEEEEEEEEeccccccccccCCCCCCC
Q psy17704 158 NAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALG-HVYPLLAQWHGVKVKLHNISLDTKLRSDALLRPNTSHV 236 (412)
Q Consensus 158 ~~~pQd~~~aTYa~Ki~keD~~IDW~~~sA~~I~n~IRA~~-p~ppa~t~~~Gk~ikI~~a~~~~~~~~~~~~~~~~~~~ 236 (412)
.++||+++.+||++|++++|+.|||+ ++|++|+|+|||++ ||||+|++++|++++|+++++...
T Consensus 186 ~~~~Q~~~~~ty~~~~~~~d~~Idw~-~~a~~i~~~iRa~~~p~pga~~~~~g~~~~i~~a~~~~~-------------- 250 (660)
T PRK08125 186 PEIPQDESQATYFGRRTPADGLIDWH-KPASTLHNLVRAVTDPWPGAFSYVGEQKFTVWSSRVLPD-------------- 250 (660)
T ss_pred ccccCCCCCceeCCCCCHHHeEECCC-CCHHHHHHHHhhcCCCCCceEEEECCEEEEEEEEEEccC--------------
Confidence 99999999999999999999999998 89999999999998 889999999999999999886422
Q ss_pred CCCcccccccccccccCCcccceecceeeeeecccccccccccccCCCCCCCCCCccccchhhhhccccCCCCCCCCCCC
Q psy17704 237 PRDQHSQLTSALSFLSGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRPNTSHVPRDQHSQLTSALSFLSGDTSSKPPSET 316 (412)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (412)
T Consensus 251 -------------------------------------------------------------------------------- 250 (660)
T PRK08125 251 -------------------------------------------------------------------------------- 250 (660)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEeCCCeEEEEecCCCeEEEeeeecCCCCCCCHHHHHccCCCCC
Q psy17704 317 KEPPERSKEPTDRLTEEPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKV 391 (412)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~~~~~~l~v~~~~g~~~~~~~~q~~gkk~~~a~~f~~g~~~~~ 391 (412)
.....||+|+.. + .|+|+|+|| +|.|.+||++|||.|++.+|+||++.+.
T Consensus 251 ---------------------~~~~~pG~i~~~-~--~~~v~~~dg-~l~i~~~q~~g~~~~~~~~~~~g~~~~~ 300 (660)
T PRK08125 251 ---------------------ASGAQPGTVLSV-A--PLRIACGEG-ALEIVTGQAGDGLYMQGSQLAQELGLVA 300 (660)
T ss_pred ---------------------CCCCCCCEEEEe-C--CEEEEeCCc-EEEEEEEECCCCCccCHHHHhcCCCCCC
Confidence 001258999854 2 399999999 8999999999999999999999987544
No 7
>PRK07579 hypothetical protein; Provisional
Probab=100.00 E-value=4.5e-45 Score=351.63 Aligned_cols=167 Identities=24% Similarity=0.301 Sum_probs=156.0
Q ss_pred cCCcEEEEccCcccCChhHHhcCCCCeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEc
Q psy17704 45 DNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSI 124 (412)
Q Consensus 45 ~~pDliVvv~fg~IIp~~iL~~~~~G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI 124 (412)
.+||++||++||+|||+++|+.+ ||||+||||||+|||++|++|||+||+ +||||+|+|++ ++|+|||+.|+.++|
T Consensus 64 ~~~DliVvvayg~ilp~~iL~~~--~~iNiHpSLLP~yRGaaPi~wAI~nGe-~tGvTih~mde-~lDtGdIi~Q~~v~I 139 (245)
T PRK07579 64 ERYDLVLSFHCKQRFPAKLVNGV--RCINIHPGFNPYNRGWFPQVFSIINGL-KIGATIHEMDE-QLDHGPIIAQREVEI 139 (245)
T ss_pred cCCCEEEEchhhccCCHHHHhhC--CEEEEcCCcCCCCCCcCHHHHHHHCCC-eEEEEEEEEcC-CCCCCCeeEEEEEEc
Confidence 35999999999999999999976 699999999999999999999999998 59999999997 799999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccCCCccccccccCC-CCHHHHHHHHhccC--CCC
Q psy17704 125 SPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNT-MSSVQVYNLHRALG--HVY 201 (412)
Q Consensus 125 ~~~dT~~sL~~kLa~~g~~LL~e~L~~l~~G~~~~~pQd~~~aTYa~Ki~keD~~IDW~~-~sA~~I~n~IRA~~--p~p 201 (412)
.++||+++|++|+..++++++.++|..+.+|.+.+++|+++..+|++|++++|++|||+. .+|++|+|+|||++ |||
T Consensus 140 ~~~dt~~sL~~kl~~~~~~ll~e~L~~i~~g~~~~~~q~~~~~~~~~k~~ked~~Idw~~~~~a~~I~n~IRAl~~~P~P 219 (245)
T PRK07579 140 ESWDSSGSVYARVMDIERELVLEHFDAIRDGSYTAKKPATEGNLNSKKDFKQLREIDLDERGTFRHFINRLRALTHDDYK 219 (245)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccccccCChhheEECCCCCCCHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999999999999998899999888888999999999999984 36999999999998 899
Q ss_pred CceE-EEcCeEEEEE
Q psy17704 202 PLLA-QWHGVKVKLH 215 (412)
Q Consensus 202 pa~t-~~~Gk~ikI~ 215 (412)
|||+ ..+|+|+.+.
T Consensus 220 gA~~~~~~g~k~~~~ 234 (245)
T PRK07579 220 NAYFVDESGRKVFVR 234 (245)
T ss_pred cEEEEEcCCcEEEEE
Confidence 9998 5699999663
No 8
>KOG3082|consensus
Probab=100.00 E-value=8.4e-44 Score=346.97 Aligned_cols=276 Identities=29% Similarity=0.422 Sum_probs=219.5
Q ss_pred CchHHHHHHHCCCcEEEcCC-Cc---cccccCCcEEEEccCcccCChhHHhcCCCCeEEEcCCCCCCCCCCcHHHHHHHh
Q psy17704 19 HSPVIQFAQDEKLTLYRWPM-DP---DLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILH 94 (412)
Q Consensus 19 ~spVk~~A~e~GIpV~~~p~-~~---~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~INiHpSLLPkYRGaaPI~wAIln 94 (412)
++|+...|...|+++...-. .+ .+....+|++|+++||++||.++|..++||+||+||||||+|||++||++||++
T Consensus 50 psP~a~~a~~k~la~~kl~p~~k~~~d~~~~~~~l~ItaSfGrllp~kll~~~pyg~iNVHPSLLPk~RGaAPV~~all~ 129 (338)
T KOG3082|consen 50 PSPAAMEANAKGLAYIKLQPGWKNFHDLMRPDDQLAITASFGRLLPFKLLNQLPYGGINVHPSLLPKYRGAAPVQRALLN 129 (338)
T ss_pred CCccccccccccceeeeccChhhccccccCCCcceEEEeehhccCcHHHHhhCCcceeecChhhcccccCcchHHHHHhc
Confidence 58888889999988765322 11 356788999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCc--cccC
Q psy17704 95 GDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGAT--YANK 172 (412)
Q Consensus 95 Gd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L~~l~~G~~~~~pQd~~~aT--Ya~K 172 (412)
||+.|||||+.|++++||.|+|++|+.++|++..|+.+|..-|+..|+++|.+.+..+..+.-+..+|+.+..+ |+||
T Consensus 130 GD~~TGVTI~~i~p~rFD~G~ilAQ~~l~v~~~~t~~~L~~~Ls~~ga~lLir~l~~l~dql~~~~~Q~~~~~t~tyaPk 209 (338)
T KOG3082|consen 130 GDTLTGVTIQTIDPKRFDKGPILAQEYLAVNPKETAPELTASLSSLGANLLIRSLYNLNDQLNTVKAQPHGRITDTYAPK 209 (338)
T ss_pred CCcccceEEEEecccccccccceecceeccCccccchHHHHHHHhccchhhHHhhccchhhhhccccCcccchhhhcCcc
Confidence 99999999999999899999999999999999999999999999999999999999998877777777777665 9999
Q ss_pred CCccccccccCCCCHHHHHHHHhccCCCCCc-eEEEcCeEEEEEEEEeccccccccccCCCCCCCCCCcccccccccccc
Q psy17704 173 IDWSYSVIDWNTMSSVQVYNLHRALGHVYPL-LAQWHGVKVKLHNISLDTKLRSDALLRPNTSHVPRDQHSQLTSALSFL 251 (412)
Q Consensus 173 i~keD~~IDW~~~sA~~I~n~IRA~~p~ppa-~t~~~Gk~ikI~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (412)
+...+..|.|++..|.+|...-|+.+ |+.- .+.+-++...+........
T Consensus 210 i~~~ea~~s~~e~~a~~I~~~~~~i~-~~~~~a~~~l~~~~~l~~l~~~~~----------------------------- 259 (338)
T KOG3082|consen 210 IISKEAFISFQESWAKKITTEDAAIG-WESMLATQILNKSRALLHLVCILN----------------------------- 259 (338)
T ss_pred ccccccccccCHHHHhhhhhHhHhhc-CcchhHHHHHHHhhhhhhHHHhhh-----------------------------
Confidence 99999999999666666666655554 5442 2222222222211110000
Q ss_pred cCCcccceecceeeeeecccccccccccccCCCCCCCCCCccccchhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy17704 252 SGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRPNTSHVPRDQHSQLTSALSFLSGDTSSKPPSETKEPPERSKEPTDRLT 331 (412)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (412)
.++ .
T Consensus 260 ----------------------~~~----------------------------t-------------------------- 263 (338)
T KOG3082|consen 260 ----------------------KKL----------------------------T-------------------------- 263 (338)
T ss_pred ----------------------hhc----------------------------c--------------------------
Confidence 000 0
Q ss_pred CCCCCCCCCCCCcEEEEEeCCCeEEEEecCCCeEEEeeeecCCCCCCCHHHHHccCCCCC-----CCCCCcceee
Q psy17704 332 EEPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKV-----KNESDKRFMN 401 (412)
Q Consensus 332 ~~~~~~~~~~~pG~~~~~~~~~~l~v~~~~g~~~~~~~~q~~gkk~~~a~~f~~g~~~~~-----~~~~~~~~~~ 401 (412)
. .........||++.|..+++.+.+.|.+|+++.+.+++++|||.|+|.+|+|||+..+ +.++..||+.
T Consensus 264 ~-~~~~~q~s~~~~~~~h~kk~~l~~~ckngs~l~vl~~~l~~kk~i~a~~f~ng~~~~w~Q~~~~a~~~~rf~~ 337 (338)
T KOG3082|consen 264 L-YRKDPQHSTSGEDWYHMKKGSLILLCKNGSLLGVLDVVLVGKKGIRASAFNNGLLVEWGQKFSSAERGGRFQY 337 (338)
T ss_pred c-cccChhhcCcccceeeeccceEEEEecCCCceeeEEEEeccccceeeecccccccchhhhhhccccccCceec
Confidence 0 0000113468999999988889999999989999999999999999999999999844 2246778875
No 9
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=100.00 E-value=2.4e-35 Score=274.94 Aligned_cols=154 Identities=18% Similarity=0.321 Sum_probs=137.6
Q ss_pred CCcceeeEEEEecCCCCCchHHHHHHHCCCcEEEcCCC-------------ccccccCCcEEEEccCcccCChhHHhcCC
Q psy17704 2 TNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD-------------PDLIKDNYDIGMVVSFGHLIPSKIINAFP 68 (412)
Q Consensus 2 ~~~li~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~-------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~ 68 (412)
++++...|.+|++.. ....+.++|+++|||+++++.. +.+++.++|++|+++|++|||+++++.++
T Consensus 23 ~~~l~~~I~~vi~~~-~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~~~~il~~~~l~~~~ 101 (190)
T TIGR00639 23 EGKIPASVVLVISNK-PDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEVDLVVLAGFMRILGPTFLSRFA 101 (190)
T ss_pred cCCCCceEEEEEECC-ccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEeCcchhCCHHHHhhcc
Confidence 355666777766653 3577889999999999875421 12567899999999999999999999999
Q ss_pred CCeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy17704 69 LGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLEC 148 (412)
Q Consensus 69 ~G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~ 148 (412)
.|+||+|||+||+|||++|++|||++|+++||+|+|+|++ ++|+|||+.|+.++|.++||+.+|++|+..++.+++.++
T Consensus 102 ~~~iNiHpslLP~yrG~~p~~~ai~~g~~~tGvTih~v~~-~~D~G~Ii~q~~~~i~~~dt~~~L~~k~~~~~~~l~~~~ 180 (190)
T TIGR00639 102 GRILNIHPSLLPAFPGLHAVEQALEAGVKESGCTVHYVDE-EVDTGPIIAQAKVPILPEDTEETLEQRIHKQEHRIYPLA 180 (190)
T ss_pred CCEEEEeCCcccCCCCccHHHHHHHcCCCeEEEEEEEEcC-CCcCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997 799999999999999999999999999999999999999
Q ss_pred HHhcCCCCC
Q psy17704 149 VRDMPRCVL 157 (412)
Q Consensus 149 L~~l~~G~~ 157 (412)
+..+..|.+
T Consensus 181 l~~~~~g~~ 189 (190)
T TIGR00639 181 IAWFAQGRL 189 (190)
T ss_pred HHHHHhCCc
Confidence 999988754
No 10
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=100.00 E-value=2.3e-35 Score=276.95 Aligned_cols=154 Identities=19% Similarity=0.235 Sum_probs=137.2
Q ss_pred CcceeeEEEEecCCCCCchHHHHHHHCCCcEEEcCCC-------------ccccccCCcEEEEccCcccCChhHHhcCCC
Q psy17704 3 NTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD-------------PDLIKDNYDIGMVVSFGHLIPSKIINAFPL 69 (412)
Q Consensus 3 ~~li~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~-------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~ 69 (412)
+.+...|.+|.+.. +...++++|+++|||+++++.. +.+++.++|++|+++|++|||+++++.+++
T Consensus 25 ~~~~~~I~~vvs~~-~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~~~~ii~~~~l~~~~~ 103 (200)
T PRK05647 25 GQLPAEIVAVISDR-PDAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQPDLVVLAGFMRILGPTFVSAYEG 103 (200)
T ss_pred CCCCcEEEEEEecC-ccchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCcCEEEhHHhhhhCCHHHHhhccC
Confidence 44555666654443 3577899999999999985421 125678999999999999999999999999
Q ss_pred CeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17704 70 GMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECV 149 (412)
Q Consensus 70 G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L 149 (412)
|+||+|||+||+|||++|++|||++|+++||+|+|+|++ ++|+|||+.|+.++|.++||..+|+.|+..++.+++.+++
T Consensus 104 ~~iNiHpslLP~yrG~~p~~~ai~~g~~~tG~Tvh~~~~-~~D~G~Ii~q~~~~i~~~dt~~~L~~kl~~~~~~ll~~~i 182 (200)
T PRK05647 104 RIINIHPSLLPSFPGLHTHEQALEAGVKVHGCTVHFVDE-GLDTGPIIAQAAVPVLAGDTEESLAARVLEQEHRLYPLVV 182 (200)
T ss_pred CEEEEeCccccCCCCccHHHHHHHcCCCeEEEEEEEEcC-CCcCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997 7999999999999999999999999999999999999999
Q ss_pred HhcCCCCCC
Q psy17704 150 RDMPRCVLN 158 (412)
Q Consensus 150 ~~l~~G~~~ 158 (412)
+.+..|.+.
T Consensus 183 ~~l~~g~~~ 191 (200)
T PRK05647 183 KWFAEGRLK 191 (200)
T ss_pred HHHHcCCcE
Confidence 999988764
No 11
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=100.00 E-value=5.4e-34 Score=269.23 Aligned_cols=155 Identities=21% Similarity=0.388 Sum_probs=139.1
Q ss_pred CCcceeeEEEEecCCCCCchHHHHHHHCCCcEEEcCCCc-------------cccccCCcEEEEccCcccCChhHHhcCC
Q psy17704 2 TNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMDP-------------DLIKDNYDIGMVVSFGHLIPSKIINAFP 68 (412)
Q Consensus 2 ~~~li~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~~-------------~l~~~~pDliVvv~fg~IIp~~iL~~~~ 68 (412)
+|++..++.+|..+. +...+.++|+++|||+++++... .+.++++|++|+++|++|||+++++.++
T Consensus 22 ~~~l~~~i~~visn~-~~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~agy~~il~~~~l~~~~ 100 (207)
T PLN02331 22 DGRVNGDVVVVVTNK-PGCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGAGVDFVLLAGYLKLIPVELVRAYP 100 (207)
T ss_pred cCCCCeEEEEEEEeC-CCChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhcCCCEEEEeCcchhCCHHHHhhCC
Confidence 566777777776664 57888999999999999865421 2567899999999999999999999999
Q ss_pred CCeEEEcCCCCCCCCCC----cHHHHHHH-hCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17704 69 LGMINVHGSILPRWRGA----APIVHAIL-HGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQ 143 (412)
Q Consensus 69 ~G~INiHpSLLPkYRGa----aPI~wAIl-nGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~ 143 (412)
+|+||+||||||+|||+ +|++||++ +|+++||+|+|+|++ ++|+||||+|+.++|.++||+++|++|+..++.+
T Consensus 101 ~~~iNiHpSLLP~yrG~g~~~~~v~~a~i~~g~~~tG~Tvh~v~~-~~D~G~Ii~Q~~~~I~~~dt~~~L~~r~~~~e~~ 179 (207)
T PLN02331 101 RSILNIHPALLPAFGGKGYYGIKVHKAVIASGARYSGPTVHFVDE-HYDTGRILAQRVVPVLATDTPEELAARVLHEEHQ 179 (207)
T ss_pred CCEEEEeCccccCCCCCCcccchHHHHHHHcCCCeEEEEEEEECC-CCCCCCeEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999996 79999966 899999999999997 6999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCC
Q psy17704 144 LLLECVRDMPRCVLN 158 (412)
Q Consensus 144 LL~e~L~~l~~G~~~ 158 (412)
++.++|+.+..|.+.
T Consensus 180 ll~~al~~l~~~~~~ 194 (207)
T PLN02331 180 LYVEVVAALCEERIV 194 (207)
T ss_pred HHHHHHHHHHcCCcE
Confidence 999999999887643
No 12
>KOG2452|consensus
Probab=100.00 E-value=6.9e-34 Score=289.76 Aligned_cols=209 Identities=27% Similarity=0.399 Sum_probs=193.0
Q ss_pred EEEEecCC--CCCchHHHHHHHCCCcEEEcCCC----c-------cccccCCcEEEEccCcccCChhHHhcCCCCeEEEc
Q psy17704 9 LEVVSSKE--GKHSPVIQFAQDEKLTLYRWPMD----P-------DLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVH 75 (412)
Q Consensus 9 i~VVt~~~--gk~spVk~~A~e~GIpV~~~p~~----~-------~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~INiH 75 (412)
+.|+|.|| ||..++...|++-|+||+..... + ....+.+++-|..-+.|+||-++++.|++|.|-+|
T Consensus 27 v~vftipdk~g~~d~l~~ea~kdgvpv~k~srwr~k~~~lp~~~~~y~~~gaelnvlpfcsqfip~ei~~ap~~~siiyh 106 (881)
T KOG2452|consen 27 VGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKAQALPDVVAKYQALGAELNVLPFCSQFIPMEIISAPRHGSIIYH 106 (881)
T ss_pred EEEEEecCCCCCcCcccccccccCcceechhhhhhhccccHHHHHHHHhhcccccccchhhhccchhhcccccCCceeec
Confidence 45678887 78999999999999999983221 1 13567889999999999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHH-HHHHHHHHHHHHHHhcCC
Q psy17704 76 GSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNK-LALVGGQLLLECVRDMPR 154 (412)
Q Consensus 76 pSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~k-La~~g~~LL~e~L~~l~~ 154 (412)
||+||+.||++.|+|.++.||++.|.||++.|+ |+|+|||++|+++.+.++||..+||+| |+..|...+.+.++.|..
T Consensus 107 ps~lp~hrgasainwtli~gd~~~g~sifwadd-gldtg~~llqk~c~v~~~dt~~tly~rfl~p~gi~~v~~~v~lia~ 185 (881)
T KOG2452|consen 107 PSLLPRHRGASAINWTLIHGDKKGGFSIFWADD-GLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIKGVVQAVRLIAE 185 (881)
T ss_pred cccCccccCccccceEEEeccccCceEEEeecC-CccccchhhhhhcccCCCccHHHHHHhhcChHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999997 799999999999999999999999999 899999999999999999
Q ss_pred CCCCCCCCCCCCCccccCCCccccccccCCCCHHHHHHHHhccCCCCCceEEEcCeEEEEEEEEe
Q psy17704 155 CVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISL 219 (412)
Q Consensus 155 G~~~~~pQd~~~aTYa~Ki~keD~~IDW~~~sA~~I~n~IRA~~p~ppa~t~~~Gk~ikI~~a~~ 219 (412)
|+.++.+|+++++||-+-++++-..|||+ +++++|+|+||+-...||||+..+|+++.++...+
T Consensus 186 gkapr~~qpeegasye~~~k~e~a~i~w~-~~~~~~hn~irgndkvpgaw~~~~~~k~sff~s~l 249 (881)
T KOG2452|consen 186 GKAPRLPQPEEGATYEGIQKKETAKINWD-QPAEAIHNWIRGNDKVPGAWTEACEQKLTFFNSTL 249 (881)
T ss_pred CCCCCCCCcccCCcccccccchhhcCCcc-chHHHHHHHhhcCCCCCcHHHHhhcceeeeecccc
Confidence 99999999999999999999999999998 89999999999999999999999999998886543
No 13
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=6.7e-33 Score=272.98 Aligned_cols=152 Identities=22% Similarity=0.297 Sum_probs=137.1
Q ss_pred CCcceeeEEEEecCCCCCchHHHHHHHCCCcEEEcCCC------------ccccccCCcEEEEccCcccCChhHHhcCCC
Q psy17704 2 TNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD------------PDLIKDNYDIGMVVSFGHLIPSKIINAFPL 69 (412)
Q Consensus 2 ~~~li~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~ 69 (412)
+|++..+|.+|.+. ...++.+|+++|||++.++.+ +.++++++|++|+++|++|||+++++.++.
T Consensus 112 ~~~~~~~i~~visn---~~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~ 188 (286)
T PRK06027 112 SGELPVEIAAVISN---HDDLRSLVERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARYMQILSPDFVARFPG 188 (286)
T ss_pred cCCCCcEEEEEEEc---ChhHHHHHHHhCCCEEEeccCccccchhHHHHHHHHHHhCCCEEEEecchhhcCHHHHhhccC
Confidence 45666777777665 246788999999999985432 125678999999999999999999999999
Q ss_pred CeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17704 70 GMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECV 149 (412)
Q Consensus 70 G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L 149 (412)
|+||+||||||+|||++|++|||.+|+++||+|+|+|++ ++|+||||+|+.++|.++||.++|.+|+..++.+++.+++
T Consensus 189 ~iiNiHpSLLP~yrG~~~~~~ai~~G~~~tG~TiH~v~~-~~D~G~Ii~Q~~v~i~~~dt~~~L~~ri~~~E~~~~~~ai 267 (286)
T PRK06027 189 RIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTA-DLDEGPIIEQDVIRVDHRDTAEDLVRAGRDVEKQVLARAV 267 (286)
T ss_pred CceecCcccCCCCCCCCHHHHHHHCCCCeEEEEEEEEcC-CCcCCCcEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997 6999999999999999999999999999999999999999
Q ss_pred HhcCCCCC
Q psy17704 150 RDMPRCVL 157 (412)
Q Consensus 150 ~~l~~G~~ 157 (412)
+.+..+..
T Consensus 268 ~~~~~~~~ 275 (286)
T PRK06027 268 RWHLEDRV 275 (286)
T ss_pred HHHHhCCE
Confidence 99988754
No 14
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=100.00 E-value=2.3e-32 Score=251.50 Aligned_cols=140 Identities=31% Similarity=0.504 Sum_probs=115.1
Q ss_pred eeEEEEecCCCCCchHHHHHHHCCCcEEEcCCC-------------ccccccCCcEEEEccCcccCChhHHhcCCCCeEE
Q psy17704 7 SKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD-------------PDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMIN 73 (412)
Q Consensus 7 ~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~-------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~IN 73 (412)
.-+.|||.++ .......|.+.+++...+... ..+++.+||++|+++|++|||+++|+.+++|+||
T Consensus 29 ~iv~Vit~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dl~v~~~~~~il~~~~l~~~~~~~iN 106 (181)
T PF00551_consen 29 EIVLVITNPD--KPRGRSRAIKNGIPAQVADEKNFQPRSENDEELLELLESLNPDLIVVAGYGRILPKEFLSIPPYGIIN 106 (181)
T ss_dssp EEEEEEESST--TTHHHHHHHHTTHHEEEHHGGGSSSHHHHHHHHHHHHHHTT-SEEEESS-SS---HHHHHHSTTSEEE
T ss_pred eEEEEecccc--ccccccccccCCCCEEeccccCCCchHhhhhHHHHHHHhhccceeehhhhHHHhhhhhhhcccccEEE
Confidence 4566777775 455667888888887664321 1256799999999999999999999999999999
Q ss_pred EcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17704 74 VHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECV 149 (412)
Q Consensus 74 iHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L 149 (412)
+|||+||+|||++|++|||++|++++|+|+|+|++ ++|+|+||.|+.++|.++||..+|++|+..++.++|.++|
T Consensus 107 iHpslLP~yrG~~p~~~ai~~g~~~~G~Tvh~~~~-~~D~G~Ii~q~~~~i~~~dt~~~l~~r~~~~~~~~l~~ai 181 (181)
T PF00551_consen 107 IHPSLLPKYRGASPIQWAILNGEKETGVTVHFMDE-GLDAGPIIAQKKFPIEPDDTAESLYERLAEAEAELLVEAI 181 (181)
T ss_dssp EESSSTTTTBSSTHHHHHHHHTSSEEEEEEEEE-S-STTTSEEEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHH
T ss_pred EeecCCccCCCcchhhhhhcCCcceeeeEEEEecc-cCcCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999997 6999999999999999999999999999999999999986
No 15
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=3.1e-32 Score=268.35 Aligned_cols=152 Identities=18% Similarity=0.215 Sum_probs=136.4
Q ss_pred CCcceeeEEEEecCCCCCchHHHHHHHCCCcEEEcCCC------------ccccccCCcEEEEccCcccCChhHHhcCCC
Q psy17704 2 TNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD------------PDLIKDNYDIGMVVSFGHLIPSKIINAFPL 69 (412)
Q Consensus 2 ~~~li~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~ 69 (412)
+|++..+|.+|.++. +.+..+|+++|||++.++.. +.+.++++|++|+++|++|||+++++.+++
T Consensus 112 ~~~~~~~i~~visn~---~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~ 188 (286)
T PRK13011 112 IGELPMDIVGVVSNH---PDLEPLAAWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLARYMQVLSPELCRKLAG 188 (286)
T ss_pred cCCCCcEEEEEEECC---ccHHHHHHHhCCCEEEeCCCcCchhhhHHHHHHHHHHhCcCEEEEeChhhhCCHHHHhhccC
Confidence 566767777776652 35788899999999875421 125678999999999999999999999999
Q ss_pred CeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17704 70 GMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECV 149 (412)
Q Consensus 70 G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L 149 (412)
|+||+||||||+|||++|++|||.+|+++||+|+|+|++ ++|+||||+|+.++|.++||.++|.+|...+..+++.+++
T Consensus 189 ~iiNiHpSLLP~~rG~~~~~~ai~~G~~~tG~TvH~v~~-~~D~G~Ii~Q~~v~I~~~dt~~~L~~r~~~~E~~~~~~ai 267 (286)
T PRK13011 189 RAINIHHSFLPGFKGAKPYHQAYERGVKLIGATAHYVTD-DLDEGPIIEQDVERVDHAYSPEDLVAKGRDVECLTLARAV 267 (286)
T ss_pred CeEEeccccCCCCCCCcHHHHHHHCCCCeEEEEEEEEcC-CCcCCCcEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997 6999999999999999999999999999999999999999
Q ss_pred HhcCCCCC
Q psy17704 150 RDMPRCVL 157 (412)
Q Consensus 150 ~~l~~G~~ 157 (412)
+.+..+.+
T Consensus 268 ~~~~~~~~ 275 (286)
T PRK13011 268 KAHIERRV 275 (286)
T ss_pred HHHHhCCe
Confidence 99987754
No 16
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=99.98 E-value=5.1e-32 Score=266.14 Aligned_cols=152 Identities=18% Similarity=0.263 Sum_probs=138.3
Q ss_pred CCcceeeEEEEecCCCCCchHHHHHHHCCCcEEEcCCC------------ccccccCCcEEEEccCcccCChhHHhcCCC
Q psy17704 2 TNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD------------PDLIKDNYDIGMVVSFGHLIPSKIINAFPL 69 (412)
Q Consensus 2 ~~~li~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~ 69 (412)
.|+|..+|.+|.++. ..+..+|+++|||++.++.. +.+.++++|++|+++|++|||+++++.++.
T Consensus 107 ~g~l~~~i~~visn~---~~~~~~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~ 183 (280)
T TIGR00655 107 SGELDAEIALVISNH---EDLRSLVERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKYMQILSPDFVKRYPN 183 (280)
T ss_pred cCCCCcEEEEEEEcC---hhHHHHHHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCCCEEEEeCchhhCCHHHHhhccC
Confidence 577878888887763 45677899999999986641 125688999999999999999999999999
Q ss_pred CeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17704 70 GMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECV 149 (412)
Q Consensus 70 G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L 149 (412)
++||+||||||+|||++|++||+.+|+++||+|+|+|++ ++|+||||.|+.++|.++||.++|..|...++.+++.+++
T Consensus 184 ~iINiHpSLLP~f~G~~p~~~ai~~G~k~tG~TvH~V~e-~lD~GpII~Q~~v~I~~~dt~~~L~~ri~~~E~~~~~~ai 262 (280)
T TIGR00655 184 KIINIHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTE-ELDEGPIIEQDVVRVDHTDNVEDLIRAGRDIEKVVLARAV 262 (280)
T ss_pred CEEEecCCcCCCCCCcCHHHHHHHcCCCeEEEEEEEEcC-CCcCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997 6999999999999999999999999999999999999999
Q ss_pred HhcCCCCC
Q psy17704 150 RDMPRCVL 157 (412)
Q Consensus 150 ~~l~~G~~ 157 (412)
+.+.++.+
T Consensus 263 ~~~~~~~~ 270 (280)
T TIGR00655 263 KLHLEDRV 270 (280)
T ss_pred HHHHhCCe
Confidence 99988754
No 17
>PLN02828 formyltetrahydrofolate deformylase
Probab=99.98 E-value=9.6e-32 Score=262.53 Aligned_cols=154 Identities=19% Similarity=0.313 Sum_probs=136.3
Q ss_pred CCCcceeeEEEEecCCC--CCchHHHHHHHCCCcEEEcCCCc------c---ccccCCcEEEEccCcccCChhHHhcCCC
Q psy17704 1 RTNTLISKLEVVSSKEG--KHSPVIQFAQDEKLTLYRWPMDP------D---LIKDNYDIGMVVSFGHLIPSKIINAFPL 69 (412)
Q Consensus 1 ~~~~li~~i~VVt~~~g--k~spVk~~A~e~GIpV~~~p~~~------~---l~~~~pDliVvv~fg~IIp~~iL~~~~~ 69 (412)
++|+|..+|.+|.++.. ...+++++|+++|||++.++... . +.. ++|++|+++|++|||+++++.++.
T Consensus 92 ~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~-~~DliVLAgym~IL~~~~l~~~~~ 170 (268)
T PLN02828 92 QDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVK-GTDFLVLARYMQILSGNFLKGYGK 170 (268)
T ss_pred hcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHh-cCCEEEEeeehHhCCHHHHhhccC
Confidence 36778777777766532 34689999999999998655421 1 112 699999999999999999999999
Q ss_pred CeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17704 70 GMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECV 149 (412)
Q Consensus 70 G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L 149 (412)
++||+||||||+|||++|++||+.+|++++|+|+|+|++ ++|+||||.|+.++|.++||.++|..|+..++..+|.+++
T Consensus 171 riINIHpSlLP~f~Ga~p~~~Ai~~Gvk~tG~TvH~V~~-~lD~GpII~Q~~v~V~~~dt~~~L~~r~~~~E~~~l~~av 249 (268)
T PLN02828 171 DIINIHHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTE-ELDAGPIIEQMVERVSHRDNLRSFVQKSENLEKQCLAKAI 249 (268)
T ss_pred CEEEecCccCCCCCCCcHHHHHHHcCCCeEEEEEEEEcC-CCCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 6999999999999999999999999999999999999999
Q ss_pred HhcCCCC
Q psy17704 150 RDMPRCV 156 (412)
Q Consensus 150 ~~l~~G~ 156 (412)
+.+.++.
T Consensus 250 ~~~~~~~ 256 (268)
T PLN02828 250 KSYCELR 256 (268)
T ss_pred HHHHhCC
Confidence 9997654
No 18
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=99.98 E-value=8.2e-32 Score=265.75 Aligned_cols=152 Identities=17% Similarity=0.216 Sum_probs=138.4
Q ss_pred CCcceeeEEEEecCCCCCchHHHHHHHCCCcEEEcCCC------------ccccccCCcEEEEccCcccCChhHHhcCCC
Q psy17704 2 TNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD------------PDLIKDNYDIGMVVSFGHLIPSKIINAFPL 69 (412)
Q Consensus 2 ~~~li~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~ 69 (412)
+|++..+|.+|.++. +.++++|+++|||++.++.. +.++++++|++|+++|++|||+++++.+++
T Consensus 116 ~~~l~~~i~~visn~---~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~ 192 (289)
T PRK13010 116 MGELDMDIVGIISNH---PDLQPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARYMQVLSDDLSRKLSG 192 (289)
T ss_pred CCCCCcEEEEEEECC---hhHHHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEEehhhhhCCHHHHhhccC
Confidence 577878888888763 45689999999999975421 125678999999999999999999999999
Q ss_pred CeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17704 70 GMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECV 149 (412)
Q Consensus 70 G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L 149 (412)
++||+||||||+|||++|++|||.+|+++||+|+|+|++ ++|+||||+|+.++|.++||.++|..|...+..+++.+++
T Consensus 193 ~iiNiHpSlLP~f~G~~~~~~ai~~G~k~tG~TvH~v~~-~lD~GpII~Q~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai 271 (289)
T PRK13010 193 RAINIHHSFLPGFKGARPYHQAHARGVKLIGATAHFVTD-DLDEGPIIEQDVERVDHSYSPEDLVAKGRDVECLTLARAV 271 (289)
T ss_pred CceeeCcccCCCCCCCCHHHHHHHcCCCeEEEEEEEEcC-CCCCCCceEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997 6999999999999999999999999999999999999999
Q ss_pred HhcCCCCC
Q psy17704 150 RDMPRCVL 157 (412)
Q Consensus 150 ~~l~~G~~ 157 (412)
+.+.++.+
T Consensus 272 ~~~~~~~~ 279 (289)
T PRK13010 272 KAFIEHRV 279 (289)
T ss_pred HHHHhCCE
Confidence 99988754
No 19
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=99.96 E-value=1e-28 Score=229.99 Aligned_cols=156 Identities=19% Similarity=0.242 Sum_probs=141.2
Q ss_pred CCcceeeEEEEecCCCCCchHHHHHHHCCCcEEEcCCCc-------------cccccCCcEEEEccCcccCChhHHhcCC
Q psy17704 2 TNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMDP-------------DLIKDNYDIGMVVSFGHLIPSKIINAFP 68 (412)
Q Consensus 2 ~~~li~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~~-------------~l~~~~pDliVvv~fg~IIp~~iL~~~~ 68 (412)
+|.+..+|.+|.++. ...++.++|+++|||.+.+..+. .+.+.++|++|++||++||.+.+++.++
T Consensus 23 ~~~~~a~i~~Visd~-~~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvLAGyMrIL~~~fl~~~~ 101 (200)
T COG0299 23 GGKLDAEIVAVISDK-ADAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAGYMRILGPEFLSRFE 101 (200)
T ss_pred cCCCCcEEEEEEeCC-CCCHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEEcchHHHcCHHHHHHhh
Confidence 455667777777764 58999999999999987754421 2568899999999999999999999999
Q ss_pred CCeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy17704 69 LGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLEC 148 (412)
Q Consensus 69 ~G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~ 148 (412)
..+||+||||||+|.|.+.+..|+.+|++++|+|+|++++ ++|+||||.|..+||.++||.++|.+|+.....+++.++
T Consensus 102 grIlNIHPSLLP~f~G~h~~~~A~~aG~k~sG~TVH~V~e-~vD~GpII~Q~~Vpv~~~Dt~etl~~RV~~~Eh~lyp~~ 180 (200)
T COG0299 102 GRILNIHPSLLPAFPGLHAHEQALEAGVKVSGCTVHFVTE-GVDTGPIIAQAAVPVLPGDTAETLEARVLEQEHRLYPLA 180 (200)
T ss_pred cceEecCcccccCCCCchHHHHHHHcCCCccCcEEEEEcc-CCCCCCeEEEEeeeecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999997 699999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCC
Q psy17704 149 VRDMPRCVLNA 159 (412)
Q Consensus 149 L~~l~~G~~~~ 159 (412)
+..+.+|....
T Consensus 181 v~~~~~g~~~~ 191 (200)
T COG0299 181 VKLLAEGRLKI 191 (200)
T ss_pred HHHHHhCccee
Confidence 99999987543
No 20
>KOG3076|consensus
Probab=99.92 E-value=5.8e-25 Score=203.17 Aligned_cols=157 Identities=19% Similarity=0.304 Sum_probs=140.6
Q ss_pred CCcc--eeeEEEEecCCCCCchHHHHHHHCCCcEEEcCCC-------------ccccccCCcEEEEccCcccCChhHHhc
Q psy17704 2 TNTL--ISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD-------------PDLIKDNYDIGMVVSFGHLIPSKIINA 66 (412)
Q Consensus 2 ~~~l--i~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~-------------~~l~~~~pDliVvv~fg~IIp~~iL~~ 66 (412)
.+.+ .++|..|.++. +..-..+.|.++|||+.-+|.. +.+.++++|++++++|++||+.+++..
T Consensus 29 ~~~l~~~a~VvlviSnk-~~~~GL~rA~~~gIPt~vip~k~~a~R~~~d~eL~~~l~e~~~d~v~lAG~M~iLs~~fl~~ 107 (206)
T KOG3076|consen 29 DGSLGPNADVVLVISNK-KGVYGLERAADAGIPTLVIPHKRFASREKYDNELAEVLLELGTDLVCLAGYMRILSGEFLSQ 107 (206)
T ss_pred CCCcCCCceEEEEEecc-ccchhhhHHHHCCCCEEEeccccccccccCcHHHHHHHHHhCCCEEEehhhHHHcCHHHHhh
Confidence 3455 56666777765 6677889999999999887762 136788999999999999999999999
Q ss_pred CCCCeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy17704 67 FPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLL 146 (412)
Q Consensus 67 ~~~G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~ 146 (412)
++..+||+||||||.|.|.+++..|+..|.+.+|+|+|++++ .+|+|+||.|+.++|.++||.++|.+|+..+...+++
T Consensus 108 ~~~~iiNIHPaLlpaFkG~~a~k~Aleagv~~~GctvHfV~E-evD~G~iI~q~~v~V~~~Dt~esl~qrv~~aEH~~~~ 186 (206)
T KOG3076|consen 108 LPKRIINIHPALLPAFKGLHAIKQALEAGVKLSGCTVHFVIE-EVDTGPIIAQMAVPVIPGDTLESLEQRVHDAEHKAFV 186 (206)
T ss_pred cccceEecccccccccCCchHHHHHHHhccccccceEEEehh-hccCCCceEEEeeeecCCCCHHHHHHHHHHHHHHHHH
Confidence 998999999999999999999999999999999999999998 5999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCC
Q psy17704 147 ECVRDMPRCVLNAP 160 (412)
Q Consensus 147 e~L~~l~~G~~~~~ 160 (412)
+++..+.++.....
T Consensus 187 ~Ai~~v~~~~~~~~ 200 (206)
T KOG3076|consen 187 EAIKAVCEGRVLPY 200 (206)
T ss_pred HHHHHHHHhcceeC
Confidence 99999988765443
No 21
>PF02911 Formyl_trans_C: Formyl transferase, C-terminal domain; InterPro: IPR005793 Methionyl-tRNA formyltransferase (2.1.2.9 from EC) transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. This family also includes formyltetrahydrofolate dehydrogenases, which produce formate from formyl-tetrahydrofolate. These enzymes contain an N-terminal domain in common with other formyl transferase enzymes (IPR002376 from INTERPRO). The C-terminal domain has an open beta-barrel fold [].; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3RFO_D 1Z7E_C 2BLN_A 1YRW_A 1FMT_A 2FMT_B 3Q0I_A 3R8X_A 3TQQ_A 2BW0_A ....
Probab=99.89 E-value=4.8e-23 Score=170.82 Aligned_cols=100 Identities=32% Similarity=0.482 Sum_probs=80.6
Q ss_pred CCCccccccccCCCCHHHHHHHHhccCCCCCceEEEcCeEEEEEEEEeccccccccccCCCCCCCCCCcccccccccccc
Q psy17704 172 KIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLRSDALLRPNTSHVPRDQHSQLTSALSFL 251 (412)
Q Consensus 172 Ki~keD~~IDW~~~sA~~I~n~IRA~~p~ppa~t~~~Gk~ikI~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (412)
||+++|+.|||+ ++|++|+|+||||+|+|+++++++|++++|+++++.+. .
T Consensus 1 KI~~~d~~Idw~-~~A~~I~~~vRal~p~pga~~~~~~~~i~i~~~~~~~~-----------~----------------- 51 (100)
T PF02911_consen 1 KITKEDGRIDWN-QSAEEIYNLVRALNPYPGAFTTFNGKRIKILKAEPLED-----------D----------------- 51 (100)
T ss_dssp ---GGGGB--TT-SBHHHHHHHHHHTTTTT-EEEEETTEEEEEEEEEEEET-----------T-----------------
T ss_pred CCChHHeEECCC-CCHHHHHHHHhCCCCCCCEEEeeCCeEEEEEeeeeccc-----------c-----------------
Confidence 789999999996 89999999999999999999999999999999987643 0
Q ss_pred cCCcccceecceeeeeecccccccccccccCCCCCCCCCCccccchhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy17704 252 SGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRPNTSHVPRDQHSQLTSALSFLSGDTSSKPPSETKEPPERSKEPTDRLT 331 (412)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (412)
T Consensus 52 -------------------------------------------------------------------------------- 51 (100)
T PF02911_consen 52 -------------------------------------------------------------------------------- 51 (100)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCcEEEEEeCCCeEEEEecCCCeEEEeeeecCCCCCCCHHHHHccCC
Q psy17704 332 EEPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYL 388 (412)
Q Consensus 332 ~~~~~~~~~~~pG~~~~~~~~~~l~v~~~~g~~~~~~~~q~~gkk~~~a~~f~~g~~ 388 (412)
.....||+|++..+ +.|+|+|+|| +|.|.+||++|||+|+|.||+|||+
T Consensus 52 ------~~~~~pG~i~~~~~-~~l~V~~~dg-~l~i~~~q~~gkk~~~a~~f~~g~r 100 (100)
T PF02911_consen 52 ------SSSNPPGTIVYIDK-NGLLVACGDG-ALRIRELQPEGKKPMSAKDFLNGYR 100 (100)
T ss_dssp ------SSSSSTTBEEEEET-TEEEEETSBS-EEEEEEEEETTS-EEEHHHHHHHH-
T ss_pred ------cccccCceEEEEcC-CEEEEEECCc-EEEEEEEEcCCCCEEeHHHHHccCC
Confidence 00112899887665 4899999998 9999999999999999999999985
No 22
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=99.84 E-value=2.4e-20 Score=180.51 Aligned_cols=151 Identities=21% Similarity=0.281 Sum_probs=137.8
Q ss_pred CCCcceeeEEEEecCCCCCchHHHHHHHCCCcEEEcCCCc------------cccccCCcEEEEccCcccCChhHHhcCC
Q psy17704 1 RTNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMDP------------DLIKDNYDIGMVVSFGHLIPSKIINAFP 68 (412)
Q Consensus 1 ~~~~li~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~~------------~l~~~~pDliVvv~fg~IIp~~iL~~~~ 68 (412)
++|+|...|..|.++ .......++.+|||++.+|... .+.+.++|++|.+-|+|||++++...+.
T Consensus 112 ~~g~L~~eI~~VIsN---H~dl~~~v~~~~IPfhhip~~~~~k~e~E~~~~~ll~~~~~DlvVLARYMqILS~d~~~~~~ 188 (287)
T COG0788 112 RIGELPAEIVAVISN---HDDLRPLVERFDIPFHHIPVTKENKAEAEARLLELLEEYGADLVVLARYMQILSPDFVERFP 188 (287)
T ss_pred hcCCcCCceEEEEcC---CHHHHHHHHHcCCCeeeccCCCCcchHHHHHHHHHHHHhCCCEEeehhhHhhCCHHHHHhcc
Confidence 478999999999987 4688999999999999987631 2467889999999999999999999999
Q ss_pred CCeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy17704 69 LGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLEC 148 (412)
Q Consensus 69 ~G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~ 148 (412)
..+||||.|+||.|.||.|.+.|-..|-+-.|.|.|++++ .+|.||||.|..++++..++.++|..+=.......|.++
T Consensus 189 g~iINIHHSFLPaF~GA~PY~QA~eRGVKlIGATAHYVT~-dLDeGPIIeQdv~rV~H~~s~ed~~~~GrDvE~~VLARA 267 (287)
T COG0788 189 GKIINIHHSFLPAFIGANPYHQAYERGVKLIGATAHYVTA-DLDEGPIIEQDVIRVDHAYSVEDLVRAGRDVEKLVLARA 267 (287)
T ss_pred CcEEEecccccccCCCCChHHHHHhcCCeEeeeeeeeccC-CCCCCCceeeeeeecCccCCHHHHHHhCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 599999999999999999999999998888889999999
Q ss_pred HHhcCCC
Q psy17704 149 VRDMPRC 155 (412)
Q Consensus 149 L~~l~~G 155 (412)
+..-.+.
T Consensus 268 v~~hle~ 274 (287)
T COG0788 268 VKAHLED 274 (287)
T ss_pred HHHHhcc
Confidence 8876553
No 23
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=65.74 E-value=12 Score=34.03 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=39.4
Q ss_pred HHHHHCCCcEEEcCCCccccccCCcEEEEccCc----------------ccCChhHHhcCCCCeEEEcCCCCCCCCC
Q psy17704 24 QFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSFG----------------HLIPSKIINAFPLGMINVHGSILPRWRG 84 (412)
Q Consensus 24 ~~A~e~GIpV~~~p~~~~l~~~~pDliVvv~fg----------------~IIp~~iL~~~~~G~INiHpSLLPkYRG 84 (412)
+.+.++|-.+....+.+. .-.++|++..-.|. +.+..++++..+-.++-+|| ||.+||
T Consensus 52 ~~~~~~g~~i~~~~~~~e-~l~~aDvvy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~--LP~~R~ 125 (158)
T PF00185_consen 52 KNAKKNGGKITITDDIEE-ALKGADVVYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHP--LPANRG 125 (158)
T ss_dssp HHHHHHTTEEEEESSHHH-HHTT-SEEEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEES--SS--BT
T ss_pred HHHHHhCCCeEEEeCHHH-hcCCCCEEEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeC--CCCCCC
Confidence 455666766655322111 12468999999998 88999999988778999999 699998
No 24
>PLN02342 ornithine carbamoyltransferase
Probab=52.94 E-value=45 Score=34.57 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=39.0
Q ss_pred hHHHHHHHCCC-cEEEcCC-CccccccCCcEEEEccC-----------------cccCChhHHhcCCCCeEEEcCCCCCC
Q psy17704 21 PVIQFAQDEKL-TLYRWPM-DPDLIKDNYDIGMVVSF-----------------GHLIPSKIINAFPLGMINVHGSILPR 81 (412)
Q Consensus 21 pVk~~A~e~GI-pV~~~p~-~~~l~~~~pDliVvv~f-----------------g~IIp~~iL~~~~~G~INiHpSLLPk 81 (412)
.+.+.|++.|. .+....+ .+.+ .++|++.+-.| ++.|..++++..+-.++-+|| ||.
T Consensus 234 ~~~~~a~~~g~~~~~~~~d~~eav--~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp--LP~ 309 (348)
T PLN02342 234 KTVEKARAAGISKIEITNDPAEAV--KGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC--LPA 309 (348)
T ss_pred HHHHHHHHhCCCcEEEEcCHHHHh--CCCCEEEECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC--CCc
Confidence 35566666664 3322121 1112 36788876532 367888888888878999999 799
Q ss_pred CCCC
Q psy17704 82 WRGA 85 (412)
Q Consensus 82 YRGa 85 (412)
+||-
T Consensus 310 ~rg~ 313 (348)
T PLN02342 310 ERGV 313 (348)
T ss_pred CCCc
Confidence 9874
No 25
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=45.05 E-value=25 Score=35.09 Aligned_cols=74 Identities=18% Similarity=0.206 Sum_probs=47.7
Q ss_pred cccccCCcEEEEccCcccCChhH-HhcCCCCeEEEcCCC-----------CCCCCCCcHHHHHHHhCCCeeEEEEEEeCC
Q psy17704 41 DLIKDNYDIGMVVSFGHLIPSKI-INAFPLGMINVHGSI-----------LPRWRGAAPIVHAILHGDHETGISIIRVRP 108 (412)
Q Consensus 41 ~l~~~~pDliVvv~fg~IIp~~i-L~~~~~G~INiHpSL-----------LPkYRGaaPI~wAIlnGd~~TGVTIh~md~ 108 (412)
.+++.+||++|+++-.|.. .+ ++..+.=+|++..++ .+.++|...+-+.|...-...|+.+....+
T Consensus 43 ~v~~~~PDviVvi~sdH~~--~f~~d~~p~f~Ig~~~~~~~~~~g~~~~~~~~~~g~~eLA~~i~~~~~~~g~~~~~~~~ 120 (279)
T PRK13365 43 WLAEQKADVLVFFYNDHCT--TFFFDLYPTFALGVGERFPVADEGAGLRPLPPIRGDVQLQAHIAECLVNDEFDLTVFQD 120 (279)
T ss_pred HHHHhCCCEEEEEcCchHH--HhccccCCceEEEecccccccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeccC
Confidence 3667899999999765552 22 344232356666665 456777888888887666656665554444
Q ss_pred CCCCCCCe
Q psy17704 109 KHFDRGEI 116 (412)
Q Consensus 109 ~giDtGdI 116 (412)
-++|.|-.
T Consensus 121 ~~lDHG~~ 128 (279)
T PRK13365 121 KPIDHGCA 128 (279)
T ss_pred CCCCchhh
Confidence 46887753
No 26
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=39.38 E-value=31 Score=34.45 Aligned_cols=74 Identities=16% Similarity=0.177 Sum_probs=48.5
Q ss_pred cccccCCcEEEEccCcccCChhHHhcCCCCeEEEcCC-----------CCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCC
Q psy17704 41 DLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGS-----------ILPRWRGAAPIVHAILHGDHETGISIIRVRPK 109 (412)
Q Consensus 41 ~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~INiHpS-----------LLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~ 109 (412)
.+++.+||++|+++-.+. +.=..+..+.-+|+...+ .++.++|...+-+.|...-...|+.+...++-
T Consensus 43 ~~~~~~pD~vVvi~~dH~-~~f~~~~~P~f~i~~~~~~~~~~~~~g~~~~~~~~g~~~LA~~i~~~~~~~g~~~~~~~~~ 121 (277)
T cd07364 43 WIKKNKPDVAIIVYNDHA-SAFDLDIIPTFAIGTAEEFQPADEGYGPRPVPDVQGHPDLAWHIAQSLILDDFDMTIVNEM 121 (277)
T ss_pred HHHHhCCCEEEEEcCchH-HhhcccCCCceEEeeccccccCccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCC
Confidence 367889999999854332 111122223335555552 24468999999999988777788877777665
Q ss_pred CCCCCC
Q psy17704 110 HFDRGE 115 (412)
Q Consensus 110 giDtGd 115 (412)
++|.|-
T Consensus 122 ~lDHG~ 127 (277)
T cd07364 122 DVDHGL 127 (277)
T ss_pred CCCcch
Confidence 799984
No 27
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=34.33 E-value=1.5e+02 Score=30.51 Aligned_cols=59 Identities=10% Similarity=0.009 Sum_probs=36.7
Q ss_pred HHHHHCCCcEEEcCCCccccccCCcEEEEccC------------------cccCChhHHhcCCC-CeEEEcCCCCCCCCC
Q psy17704 24 QFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSF------------------GHLIPSKIINAFPL-GMINVHGSILPRWRG 84 (412)
Q Consensus 24 ~~A~e~GIpV~~~p~~~~l~~~~pDliVvv~f------------------g~IIp~~iL~~~~~-G~INiHpSLLPkYRG 84 (412)
++|++.|..+....+-.. .-.++|++.+-.| .+.|.+++++..+. +++-+|| ||.+||
T Consensus 203 ~~~~~~g~~~~~~~d~~e-a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp--lP~~r~ 279 (332)
T PRK04284 203 EIAAETGGKITITDDIDE-GVKGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC--LPSFHD 279 (332)
T ss_pred HHHHHcCCeEEEEcCHHH-HhCCCCEEEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECC--CCCCCC
Confidence 344556655543222111 1146788877532 45678888988753 7899999 699998
Q ss_pred C
Q psy17704 85 A 85 (412)
Q Consensus 85 a 85 (412)
.
T Consensus 280 ~ 280 (332)
T PRK04284 280 L 280 (332)
T ss_pred c
Confidence 6
No 28
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=33.89 E-value=1.3e+02 Score=31.06 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=22.0
Q ss_pred ccCChhHHhcCCCCeEEEcCCCCCCCCCC
Q psy17704 57 HLIPSKIINAFPLGMINVHGSILPRWRGA 85 (412)
Q Consensus 57 ~IIp~~iL~~~~~G~INiHpSLLPkYRGa 85 (412)
+.|..++++..+-+++-+|| ||.+||-
T Consensus 252 y~v~~ell~~a~~~~ivmHp--LP~~Rg~ 278 (338)
T PRK02255 252 YQVTPELMAKAGPHAKFMHC--LPATRGE 278 (338)
T ss_pred ceECHHHHhccCCCCEEeCC--CCCcCCc
Confidence 67788888888878999999 6888863
No 29
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=33.62 E-value=39 Score=31.15 Aligned_cols=58 Identities=10% Similarity=-0.042 Sum_probs=44.5
Q ss_pred chHHHHHHHCCCcEEEcCCCc----cccccCCcEEEEccCcccCChhHHhc-----CCCCeEEEcCC
Q psy17704 20 SPVIQFAQDEKLTLYRWPMDP----DLIKDNYDIGMVVSFGHLIPSKIINA-----FPLGMINVHGS 77 (412)
Q Consensus 20 spVk~~A~e~GIpV~~~p~~~----~l~~~~pDliVvv~fg~IIp~~iL~~-----~~~G~INiHpS 77 (412)
..+.++|+++|+.|+.++... .+.+.+||.+|-+++-+-|-..+.+. |.+|++|..++
T Consensus 76 g~l~~lae~~g~~v~i~~Ggt~ar~~ik~~~p~~iigVAC~~dL~~g~~~~~~~~ip~~gV~l~~~g 142 (158)
T PF01976_consen 76 GDLKKLAEKYGYKVYIATGGTLARKIIKEYRPKAIIGVACERDLISGIQDLKPLGIPVQGVLLDRPG 142 (158)
T ss_pred hHHHHHHHHcCCEEEEEcChHHHHHHHHHhCCCEEEEEechHHHHHHHHHHhhcCCCeeEEEeCCCC
Confidence 567899999999999977643 36788999999999887777666654 44567776655
No 30
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=33.46 E-value=1.5e+02 Score=29.86 Aligned_cols=56 Identities=14% Similarity=0.114 Sum_probs=35.9
Q ss_pred HHHCCCcEEEcCCCccccccCCcEEEEccC-----------------cccCChhHHhcCCCCeEEEcCCCCCCCCC
Q psy17704 26 AQDEKLTLYRWPMDPDLIKDNYDIGMVVSF-----------------GHLIPSKIINAFPLGMINVHGSILPRWRG 84 (412)
Q Consensus 26 A~e~GIpV~~~p~~~~l~~~~pDliVvv~f-----------------g~IIp~~iL~~~~~G~INiHpSLLPkYRG 84 (412)
+.+.|..+....+.+. .-.++|++.+-.| .+.|.+++++..+.+++-+|| ||..||
T Consensus 197 ~~~~g~~~~~~~d~~~-a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp--lP~~rg 269 (304)
T TIGR00658 197 AKENGGSVELTHDPVE-AVKGADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC--LPAHRG 269 (304)
T ss_pred HHHcCCeEEEEcCHHH-HhCCCCEEEEcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC--CCCCCC
Confidence 4556655544222111 1136788776532 347888888888888999999 589886
No 31
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=33.03 E-value=42 Score=33.74 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=46.3
Q ss_pred cccccCCcEEEEccCcccCChhHHhcCCCCeEEEcCC-----------CCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCC
Q psy17704 41 DLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGS-----------ILPRWRGAAPIVHAILHGDHETGISIIRVRPK 109 (412)
Q Consensus 41 ~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~INiHpS-----------LLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~ 109 (412)
.+.+.+||++|+++=.+. ..-.++..+.=+|+..++ -.|.|+|...+-+.|.+.-.+.|+.+-...+-
T Consensus 43 ~i~~~~PDvvVii~~dH~-~~f~~d~~P~f~Ig~~~~~~~~~~~~g~~~v~~~~g~~eLA~~i~~~l~~~g~~~~~~~~~ 121 (284)
T PRK13366 43 WEKEEKPDVIFLVYNDHA-TAFSLDIIPTFAIGTAAEYQPADEGWGPRPVPKVIGHPDLAAHIAQSVIQDDFDLTIVNKM 121 (284)
T ss_pred HHHHhCCCEEEEEcCCcH-HhhcccCCCceEEeeCceecCcccccCCCCCCCCCCCHHHHHHHHHHHHHCCCCEeecCCC
Confidence 366789999998843331 111121111112333222 24678899999999988877788877766655
Q ss_pred CCCCCCe
Q psy17704 110 HFDRGEI 116 (412)
Q Consensus 110 giDtGdI 116 (412)
++|.|-.
T Consensus 122 ~lDHG~~ 128 (284)
T PRK13366 122 DVDHGLT 128 (284)
T ss_pred CCCccHH
Confidence 6888864
No 32
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=30.13 E-value=1.8e+02 Score=29.87 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=35.8
Q ss_pred HHHHHCCCcEEEcCCCccccccCCcEEEEccC------------------cccCChhHHhcC-CCCeEEEcCCCCCCCCC
Q psy17704 24 QFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSF------------------GHLIPSKIINAF-PLGMINVHGSILPRWRG 84 (412)
Q Consensus 24 ~~A~e~GIpV~~~p~~~~l~~~~pDliVvv~f------------------g~IIp~~iL~~~-~~G~INiHpSLLPkYRG 84 (412)
++|++.|..+....+ ..-.-.++|++.+-.| .+.|..++++.. +-+++-+|| ||.+||
T Consensus 204 ~~~~~~g~~~~~~~d-~~~a~~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~--lP~~~~ 280 (334)
T PRK01713 204 KFAKESGARITVTDD-IDKAVKGVDFVHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHC--LPAFHN 280 (334)
T ss_pred HHHHHcCCeEEEEcC-HHHHhCCCCEEEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECC--CCCCCC
Confidence 444556655543222 1101146788777433 345677888875 567999999 689998
Q ss_pred C
Q psy17704 85 A 85 (412)
Q Consensus 85 a 85 (412)
.
T Consensus 281 ~ 281 (334)
T PRK01713 281 S 281 (334)
T ss_pred c
Confidence 5
No 33
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=30.05 E-value=63 Score=30.65 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=69.8
Q ss_pred ceeeEEEEecCCCCCchHHHHHHHCCCcEEEcCCC---c----cccccCCcEEEEccCcccCChhHHhcCCCCeEEEcCC
Q psy17704 5 LISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD---P----DLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGS 77 (412)
Q Consensus 5 li~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~---~----~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~INiHpS 77 (412)
.+++|.|++++. .+-.+.+|++.|++|+..|.. + .+.....-++++.+=--+|...+|+.....+.
T Consensus 40 ~~d~i~v~isp~--tp~t~~~~~~~gv~vi~tpG~GYv~Dl~~al~~l~~P~lvvsaDLp~l~~~~i~~vi~~~~----- 112 (177)
T COG2266 40 IVDEIIVAISPH--TPKTKEYLESVGVKVIETPGEGYVEDLRFALESLGTPILVVSADLPFLNPSIIDSVIDAAA----- 112 (177)
T ss_pred hcCcEEEEeCCC--CHhHHHHHHhcCceEEEcCCCChHHHHHHHHHhcCCceEEEecccccCCHHHHHHHHHHHh-----
Confidence 578899999984 677899999999999997653 1 23445533555555446888888886643332
Q ss_pred CCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCC-CCCHHHHH
Q psy17704 78 ILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISP-DDTAGELH 134 (412)
Q Consensus 78 LLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~-~dT~~sL~ 134 (412)
-+..|+.-.-..|.-.+|+++.- +...+.+..-..-...- =+|.++|.
T Consensus 113 -----~~~~p~~~~~~~G~v~~Glni~~----~~~~~~~~~i~~~~la~NVNT~eDl~ 161 (177)
T COG2266 113 -----SVEVPIVTVVKAGRVPVGLNIVG----GKQEEEILEIDNPELAVNVNTPEDLK 161 (177)
T ss_pred -----hccCceeEeeccCccceeeEeec----CCCcceeEEeeccceeEecCCHHHHH
Confidence 24444444445554578999874 23445554443211111 24666663
No 34
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=27.31 E-value=2.2e+02 Score=28.82 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=36.0
Q ss_pred HHHHHCCCcEEEcCCCccccccCCcEEEEccC-----------------cccCChhHHhcCCCCeEEEcCCCCCCCCCC
Q psy17704 24 QFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSF-----------------GHLIPSKIINAFPLGMINVHGSILPRWRGA 85 (412)
Q Consensus 24 ~~A~e~GIpV~~~p~~~~l~~~~pDliVvv~f-----------------g~IIp~~iL~~~~~G~INiHpSLLPkYRGa 85 (412)
+++++.|..+....+.+. -.++|++.+-.| .+.|..++++..+.. +-+|| ||.+||-
T Consensus 194 ~~~~~~g~~~~~~~d~~a--~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~vt~~~l~~a~~~-~vmH~--lP~~Rg~ 267 (302)
T PRK14805 194 ELAAKSGGKLVLTSDIEA--IEGHDAIYTDTWISMGDDTPLAEIKAKFAPYQVNKALMEKAGAT-FVMHC--QPAHRGV 267 (302)
T ss_pred HHHHHcCCEEEEEcCHHH--HCCCCEEEeeceEeCCCccccHHHHHhccCCcCCHHHHhcCCCC-eEECC--CCCCCCC
Confidence 345567877655343222 246787777221 356778888876655 88898 6888864
No 35
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=26.36 E-value=50 Score=21.56 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=11.7
Q ss_pred CCcHHHHHHHhCCC
Q psy17704 84 GAAPIVHAILHGDH 97 (412)
Q Consensus 84 GaaPI~wAIlnGd~ 97 (412)
|..|++||...|..
T Consensus 2 G~TpLh~A~~~~~~ 15 (33)
T PF00023_consen 2 GNTPLHYAAQRGHP 15 (33)
T ss_dssp SBBHHHHHHHTTCH
T ss_pred cccHHHHHHHHHHH
Confidence 78899999998853
No 36
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=25.90 E-value=1.8e+02 Score=31.96 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=24.2
Q ss_pred cccCChhHHhcCCCCeEEEcCCCCCCCCCC
Q psy17704 56 GHLIPSKIINAFPLGMINVHGSILPRWRGA 85 (412)
Q Consensus 56 g~IIp~~iL~~~~~G~INiHpSLLPkYRGa 85 (412)
++.+.+++++..+-+++-+|| ||.+||.
T Consensus 272 ~y~vt~elm~~ak~~ai~MHc--LPa~Rg~ 299 (525)
T PRK13376 272 AVTFRKEFLDKLPEGVKFYHP--LPRHKVY 299 (525)
T ss_pred CcEECHHHHhccCCCCEEECC--CCCCCCC
Confidence 567889999988888999999 7999985
No 37
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=25.13 E-value=61 Score=32.24 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=44.5
Q ss_pred cccccCCcEEEEccCcccCChhHHhcCCCCeEEEcC---------CC-CCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCC
Q psy17704 41 DLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHG---------SI-LPRWRGAAPIVHAILHGDHETGISIIRVRPKH 110 (412)
Q Consensus 41 ~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~INiHp---------SL-LPkYRGaaPI~wAIlnGd~~TGVTIh~md~~g 110 (412)
.+++.+||++|+++=-+..--. ....+.-+++... +. -+.|+|...+-+.|...-...|+.+....+-+
T Consensus 41 ~v~~~~pD~ivvi~~dH~~~f~-~~~~P~f~i~~~~~~g~~~~~~~~~~~~~~g~~eLA~~i~~~l~~~g~~~~~~~~~~ 119 (277)
T cd07368 41 RLAALQVTSVVVIGDDHYTLFG-TYCLPMYLIGTGDVDGPYDPLPGLPRAVIENNEPLAHHIMQHGLEYGIDWAVARSFT 119 (277)
T ss_pred HHHHcCCCEEEEEcCchHhhhh-hccCCceEEecccccCCccccCCCCcccCcCCHHHHHHHHHHHHHcCCCEeeecCcC
Confidence 4678899999999721111100 1111122334322 11 34599999999999877667787665554446
Q ss_pred CCCCC
Q psy17704 111 FDRGE 115 (412)
Q Consensus 111 iDtGd 115 (412)
+|.|-
T Consensus 120 lDHG~ 124 (277)
T cd07368 120 VDHAA 124 (277)
T ss_pred CCcch
Confidence 89997
No 38
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=24.58 E-value=2.8e+02 Score=28.04 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=36.5
Q ss_pred HHHCCCcEEEcCC-CccccccCCcEEEEccC-----------------cccCChhHHhcCCCCeEEEcCCCCCCCCCC
Q psy17704 26 AQDEKLTLYRWPM-DPDLIKDNYDIGMVVSF-----------------GHLIPSKIINAFPLGMINVHGSILPRWRGA 85 (412)
Q Consensus 26 A~e~GIpV~~~p~-~~~l~~~~pDliVvv~f-----------------g~IIp~~iL~~~~~G~INiHpSLLPkYRGa 85 (412)
|++.|..+....+ .+.+ .++|++.+-.| .+.|.+++++..+-+++-+|| ||.+||-
T Consensus 198 ~~~~g~~~~~~~d~~~a~--~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp--lP~~R~~ 271 (304)
T PRK00779 198 AKETGASIEVTHDPKEAV--KGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC--LPAHRGE 271 (304)
T ss_pred HHHcCCeEEEEcCHHHHh--CCCCEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC--CCccCCC
Confidence 6677766544222 1112 36788887543 456777888887778999996 6888764
No 39
>KOG3082|consensus
Probab=23.92 E-value=23 Score=36.37 Aligned_cols=34 Identities=35% Similarity=0.531 Sum_probs=30.8
Q ss_pred CCccccCCCccccccccCCCCHHHHHHHHhccCC
Q psy17704 166 GATYANKIDWSYSVIDWNTMSSVQVYNLHRALGH 199 (412)
Q Consensus 166 ~aTYa~Ki~keD~~IDW~~~sA~~I~n~IRA~~p 199 (412)
..+|+.+|+++|..|.|..+.+.+++|+-|++.+
T Consensus 220 ~e~~a~~I~~~~~~i~~~~~~a~~~l~~~~~l~~ 253 (338)
T KOG3082|consen 220 QESWAKKITTEDAAIGWESMLATQILNKSRALLH 253 (338)
T ss_pred CHHHHhhhhhHhHhhcCcchhHHHHHHHhhhhhh
Confidence 3468999999999999998999999999999975
No 40
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=23.66 E-value=83 Score=31.39 Aligned_cols=75 Identities=20% Similarity=0.241 Sum_probs=45.1
Q ss_pred cccccCCcEEEEccCcccCChhHHhcCCCCeEEEcCCC-----------CCCCCCCcHHHHHHHhCCCeeEEEEEEeCCC
Q psy17704 41 DLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSI-----------LPRWRGAAPIVHAILHGDHETGISIIRVRPK 109 (412)
Q Consensus 41 ~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~INiHpSL-----------LPkYRGaaPI~wAIlnGd~~TGVTIh~md~~ 109 (412)
.+.+.+||++|+++-.|..-- ..+..+.=+|+...++ ++.++|...+-+.|...-...|+.+-...+.
T Consensus 43 ~i~~~~PD~iVvi~~dH~~~f-~~d~~p~f~Ig~~~~~~~~d~~~~~~~~~~~~g~~~LA~~i~~~~~~~g~~~~~~~~~ 121 (277)
T cd07950 43 WLAEQKPDVLFMVYNDHVTSF-FFDHYSAFALGVGDSYEVADEGGGPRDLPPIRGHAALAQHIAESLVADEFDLTFFQDK 121 (277)
T ss_pred HHHHhCCCEEEEEcCcHHHHh-ccccCCcEEEEecccccccccccCCccCCCCCCCHHHHHHHHHHHHhcCCCeeeccCC
Confidence 367889999999993221110 0132222245555554 3678888889999987655555544444444
Q ss_pred CCCCCCe
Q psy17704 110 HFDRGEI 116 (412)
Q Consensus 110 giDtGdI 116 (412)
++|.|-.
T Consensus 122 ~lDHG~~ 128 (277)
T cd07950 122 PLDHGCF 128 (277)
T ss_pred CCCceee
Confidence 6888854
No 41
>PF13606 Ank_3: Ankyrin repeat
Probab=22.49 E-value=61 Score=21.26 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=11.8
Q ss_pred CCcHHHHHHHhCCC
Q psy17704 84 GAAPIVHAILHGDH 97 (412)
Q Consensus 84 GaaPI~wAIlnGd~ 97 (412)
|..|++||+.+|..
T Consensus 2 G~T~Lh~A~~~g~~ 15 (30)
T PF13606_consen 2 GNTPLHLAASNGNI 15 (30)
T ss_pred CCCHHHHHHHhCCH
Confidence 78899999999853
No 42
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=22.28 E-value=3.1e+02 Score=28.33 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=35.6
Q ss_pred HHHHHCCCcEEEcCCCccccccCCcEEEEccC------------------cccCChhHHhcC-CCCeEEEcCCCCCCCCC
Q psy17704 24 QFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSF------------------GHLIPSKIINAF-PLGMINVHGSILPRWRG 84 (412)
Q Consensus 24 ~~A~e~GIpV~~~p~~~~l~~~~pDliVvv~f------------------g~IIp~~iL~~~-~~G~INiHpSLLPkYRG 84 (412)
+.|++.|..+....+-.. .-.++|++.+-.| .+.|..++++.. +-+++-+|| ||.+||
T Consensus 204 ~~~~~~g~~i~~~~d~~e-a~~~aDvvytd~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHc--LP~~~~ 280 (336)
T PRK03515 204 ALAQKNGGNITLTEDIAE-GVKGADFIYTDVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHC--LPAFHD 280 (336)
T ss_pred HHHHHcCCeEEEEcCHHH-HhCCCCEEEecCcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECC--CCCCCC
Confidence 445556665544222110 1146788877422 345667788874 567999998 689988
Q ss_pred C
Q psy17704 85 A 85 (412)
Q Consensus 85 a 85 (412)
.
T Consensus 281 ~ 281 (336)
T PRK03515 281 D 281 (336)
T ss_pred c
Confidence 5
No 43
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=21.96 E-value=64 Score=26.88 Aligned_cols=30 Identities=7% Similarity=0.137 Sum_probs=22.0
Q ss_pred chHHHHHHHCCCcEEEcCCCccc-cccCCcE
Q psy17704 20 SPVIQFAQDEKLTLYRWPMDPDL-IKDNYDI 49 (412)
Q Consensus 20 spVk~~A~e~GIpV~~~p~~~~l-~~~~pDl 49 (412)
.++..+|+++|||+..+++...| +..+.|+
T Consensus 45 ~~l~~lceek~Ip~v~V~s~~~LGkAcgi~V 75 (84)
T PRK13600 45 TRVLSQINQKNIPVSFFKSKHALGKHVGINV 75 (84)
T ss_pred HHHHHHHHHcCCCEEEECCHHHHHHHhCCCc
Confidence 67899999999999998875444 2344443
No 44
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=21.61 E-value=3.1e+02 Score=27.74 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=42.7
Q ss_pred eEEEEecCCC-CCchHHHHHHHCCCcEEEcCCCccccccCCcEEEEccC----------------cccCChhHHhcCCCC
Q psy17704 8 KLEVVSSKEG-KHSPVIQFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSF----------------GHLIPSKIINAFPLG 70 (412)
Q Consensus 8 ~i~VVt~~~g-k~spVk~~A~e~GIpV~~~p~~~~l~~~~pDliVvv~f----------------g~IIp~~iL~~~~~G 70 (412)
++.+++++.= -+..+.+.|+++|..+....+-.. .-.++|++..-.+ ++.|..++++..+-+
T Consensus 178 ~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~-a~~~aDvvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ 256 (301)
T TIGR00670 178 EVYLISPEELRMPKEILEELKAKGIKVRETESLEE-VIDEADVLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKG 256 (301)
T ss_pred EEEEECCccccCCHHHHHHHHHcCCEEEEECCHHH-HhCCCCEEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCC
Confidence 3444444321 133455667777776644222111 1146788877643 355667888888778
Q ss_pred eEEEcCCCCCCCCCC
Q psy17704 71 MINVHGSILPRWRGA 85 (412)
Q Consensus 71 ~INiHpSLLPkYRGa 85 (412)
++-+||- | ||-
T Consensus 257 ai~mHcl--P--Rg~ 267 (301)
T TIGR00670 257 VIIMHPL--P--RVD 267 (301)
T ss_pred CEEECCC--C--CCc
Confidence 9999995 5 764
No 45
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=21.56 E-value=73 Score=34.26 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=44.4
Q ss_pred cccccCCcEEEEccCcccCChhHHhcCCCCeEEEcCCC-----------CCCCCCCcHHHHHHHhCCCeeEEEEEEeCCC
Q psy17704 41 DLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSI-----------LPRWRGAAPIVHAILHGDHETGISIIRVRPK 109 (412)
Q Consensus 41 ~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~INiHpSL-----------LPkYRGaaPI~wAIlnGd~~TGVTIh~md~~ 109 (412)
.+++.+||++|+++--+..-=.+=..|.+ ||.+-.+. .|.++|..-+-|.|.+.-...|+.+....+-
T Consensus 190 ~l~~~~PDVvVi~~nDH~~~Ff~d~mP~F-aIG~~~~~~p~d~g~G~~~v~~~pG~peLA~~I~~~L~~~GfD~a~~~er 268 (444)
T PRK13372 190 WAKEHLPDVIILVYNDHATAFDLEIIPTF-AIGTAAEFPPADEGWGPRPVPDVIGHPELAAHIAQSVIQDDFDLTIVNEM 268 (444)
T ss_pred HHHHhCCCEEEEEccchhhhcCcccCCCe-EEEEccccCCCcccCCCCCCCCCCCCHHHHHHHHHHHHhcCCChhhccCC
Confidence 36778999999988433221111112222 34433333 3556777778888887776778766655555
Q ss_pred CCCCC
Q psy17704 110 HFDRG 114 (412)
Q Consensus 110 giDtG 114 (412)
++|.|
T Consensus 269 glDHG 273 (444)
T PRK13372 269 DVDHG 273 (444)
T ss_pred CCCch
Confidence 79999
No 46
>PRK13367 protocatechuate 4,5-dioxygenase; Provisional
Probab=20.50 E-value=88 Score=33.41 Aligned_cols=76 Identities=16% Similarity=0.115 Sum_probs=46.1
Q ss_pred cccccCCcEEEEccCcccCChhHHhcCCCCeEEEcCC-----------CCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCC
Q psy17704 41 DLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGS-----------ILPRWRGAAPIVHAILHGDHETGISIIRVRPK 109 (412)
Q Consensus 41 ~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~INiHpS-----------LLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~ 109 (412)
.+++.+||++|+++--+...=-+=..|.+ ||.+-.+ -||..+|..-+-|.|...-...|+.+....+.
T Consensus 43 ~l~~~~PDvvVv~~nDH~~~Ff~d~~P~F-~IG~~~~~~~~D~~g~P~~ly~~~G~peLA~~I~~~L~~~gfD~a~~~~~ 121 (420)
T PRK13367 43 WLEEKKPDVLLYIFNDHVTSFFFDHYSAF-ALGIDEQYAVADEGGGPRDLPPVRGHAALSRHIGASLMADEFDMSFFQDK 121 (420)
T ss_pred HHHHhCCCEEEEEccchhhhcCcccCCCe-EEEecccccccccCCCccccCCCCCCHHHHHHHHHHHHhcCCCeecccCC
Confidence 46778999999887433221111111222 3333332 24567888888898888777778777666555
Q ss_pred CCCCCCeE
Q psy17704 110 HFDRGEIV 117 (412)
Q Consensus 110 giDtGdII 117 (412)
++|.|-.+
T Consensus 122 ~lDHG~~V 129 (420)
T PRK13367 122 PLDHGLFS 129 (420)
T ss_pred CCCcchhh
Confidence 68977643
Done!