Query psy17704
Match_columns 412
No_of_seqs 285 out of 1946
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 20:53:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqq_A Methionyl-tRNA formyltr 100.0 8.1E-66 2.8E-70 510.3 30.6 262 7-388 27-303 (314)
2 3rfo_A Methionyl-tRNA formyltr 100.0 1.2E-65 4.2E-70 509.7 29.9 265 7-391 29-309 (317)
3 3q0i_A Methionyl-tRNA formyltr 100.0 2.5E-65 8.6E-70 507.6 30.0 261 8-388 33-308 (318)
4 1fmt_A Methionyl-tRNA FMet for 100.0 3E-65 1E-69 506.1 29.9 261 8-388 29-304 (314)
5 2bln_A Protein YFBG; transfera 100.0 4.8E-64 1.6E-68 495.5 29.3 260 9-389 27-298 (305)
6 2bw0_A 10-FTHFDH, 10-formyltet 100.0 2.4E-62 8.1E-67 488.1 30.0 211 8-220 48-272 (329)
7 1z7e_A Protein aRNA; rossmann 100.0 1.2E-57 3.9E-62 484.9 29.7 260 9-389 27-298 (660)
8 1zgh_A Methionyl-tRNA formyltr 100.0 5.7E-47 1.9E-51 366.9 18.3 183 28-221 56-244 (260)
9 3av3_A Phosphoribosylglycinami 100.0 2.7E-38 9.1E-43 297.3 19.8 167 7-180 31-211 (212)
10 3p9x_A Phosphoribosylglycinami 100.0 1.4E-37 4.7E-42 293.0 20.0 161 2-164 25-198 (211)
11 2ywr_A Phosphoribosylglycinami 100.0 1E-37 3.5E-42 293.9 18.9 167 9-178 32-213 (216)
12 1meo_A Phosophoribosylglycinam 100.0 4.9E-37 1.7E-41 288.6 18.0 157 3-162 24-194 (209)
13 1jkx_A GART;, phosphoribosylgl 100.0 7.2E-37 2.5E-41 287.8 18.9 154 3-159 24-191 (212)
14 3kcq_A Phosphoribosylglycinami 100.0 2.3E-36 8E-41 285.3 19.9 155 2-158 31-193 (215)
15 4ds3_A Phosphoribosylglycinami 100.0 2.1E-36 7.2E-41 284.6 19.5 154 2-157 30-196 (209)
16 3tqr_A Phosphoribosylglycinami 100.0 4.4E-36 1.5E-40 283.4 19.0 152 5-158 30-194 (215)
17 3da8_A Probable 5'-phosphoribo 100.0 2.7E-36 9.3E-41 284.9 17.4 149 7-158 39-200 (215)
18 3auf_A Glycinamide ribonucleot 100.0 6.1E-36 2.1E-40 284.7 19.6 147 9-158 53-212 (229)
19 3n0v_A Formyltetrahydrofolate 100.0 9.7E-34 3.3E-38 277.5 17.9 152 2-157 113-276 (286)
20 3lou_A Formyltetrahydrofolate 100.0 9.1E-34 3.1E-38 278.5 17.1 152 2-157 118-281 (292)
21 3o1l_A Formyltetrahydrofolate 100.0 1.4E-33 4.7E-38 278.4 18.2 152 2-157 128-291 (302)
22 3obi_A Formyltetrahydrofolate 100.0 5.4E-34 1.8E-38 279.6 14.6 153 2-157 112-276 (288)
23 3nrb_A Formyltetrahydrofolate 100.0 5.4E-34 1.9E-38 279.5 13.5 153 2-157 111-275 (287)
24 2i6u_A Otcase, ornithine carba 65.8 15 0.0005 36.0 7.6 75 8-85 175-271 (307)
25 1pvv_A Otcase, ornithine carba 65.5 16 0.00054 35.9 7.8 75 8-85 181-277 (315)
26 1vlv_A Otcase, ornithine carba 56.4 19 0.00064 35.5 6.5 75 8-85 194-291 (325)
27 4ep1_A Otcase, ornithine carba 53.6 33 0.0011 34.1 7.8 58 24-84 226-299 (340)
28 3gd5_A Otcase, ornithine carba 47.2 49 0.0017 32.5 7.8 74 8-84 183-278 (323)
29 3tpf_A Otcase, ornithine carba 43.7 50 0.0017 32.2 7.2 58 24-84 193-267 (307)
30 1duv_G Octase-1, ornithine tra 32.3 90 0.0031 30.7 7.1 72 8-82 182-277 (333)
31 4a8t_A Putrescine carbamoyltra 30.8 1.2E+02 0.0042 29.8 7.8 57 25-85 223-298 (339)
32 4a8p_A Putrescine carbamoyltra 29.9 1.4E+02 0.0047 29.7 8.0 57 25-85 201-276 (355)
33 1dxh_A Ornithine carbamoyltran 29.6 89 0.003 30.8 6.5 56 24-82 203-277 (335)
34 3grf_A Ornithine carbamoyltran 28.2 1.4E+02 0.0048 29.3 7.6 53 29-84 218-288 (328)
35 2w37_A Ornithine carbamoyltran 27.1 1.1E+02 0.0038 30.5 6.7 56 24-82 224-298 (359)
36 3hsh_A Endostatin, collagen al 27.1 37 0.0013 25.3 2.4 28 341-372 21-48 (56)
37 1zq6_A Otcase, ornithine carba 26.7 1.2E+02 0.004 30.3 6.8 56 25-84 245-320 (359)
38 3csu_A Protein (aspartate carb 25.9 2.1E+02 0.0073 27.7 8.4 71 7-78 182-268 (310)
39 2ef0_A Ornithine carbamoyltran 25.8 1E+02 0.0034 29.9 6.0 28 56-85 240-267 (301)
40 3n3f_A Collagen alpha-1(XV) ch 25.3 75 0.0026 23.4 3.8 29 340-372 18-46 (54)
41 4f2g_A Otcase 1, ornithine car 21.1 60 0.002 31.7 3.4 27 56-84 243-269 (309)
42 1ml4_A Aspartate transcarbamoy 21.1 2.1E+02 0.0071 27.8 7.2 71 7-78 182-269 (308)
No 1
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=100.00 E-value=8.1e-66 Score=510.30 Aligned_cols=262 Identities=34% Similarity=0.604 Sum_probs=240.3
Q ss_pred eeEEEEecCC---CC-----CchHHHHHHHCCCcEEEcCCC-------ccccccCCcEEEEccCcccCChhHHhcCCCCe
Q psy17704 7 SKLEVVSSKE---GK-----HSPVIQFAQDEKLTLYRWPMD-------PDLIKDNYDIGMVVSFGHLIPSKIINAFPLGM 71 (412)
Q Consensus 7 ~~i~VVt~~~---gk-----~spVk~~A~e~GIpV~~~p~~-------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~ 71 (412)
+-+.|||+|+ || ++||+++|+++||||++ +.+ +.++++++|++|+++||+|||+++|+.+++||
T Consensus 27 ~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~-~~~~~~~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~ 105 (314)
T 3tqq_A 27 RVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQ-PFSLRDEVEQEKLIAMNADVMVVVAYGLILPKKALNAFRLGC 105 (314)
T ss_dssp EEEEEECCCC----------CCHHHHHHHHTTCCEEC-CSCSSSHHHHHHHHTTCCSEEEEESCCSCCCHHHHTSSTTCE
T ss_pred eEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEEC-cccCCCHHHHHHHHhcCCCEEEEcCcccccCHHHHhhCcCCE
Confidence 3467889887 32 69999999999999998 442 13678999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy17704 72 INVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRD 151 (412)
Q Consensus 72 INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L~~ 151 (412)
||+||||||+|||++|++|||++|+++||||+|+|++ ++|+||||+|+.++|.++||+.+|++|++.++++++.++|+.
T Consensus 106 iNiHpSlLP~yRG~~pi~~Ai~~G~~~tGvTih~~~~-~~D~G~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~ 184 (314)
T 3tqq_A 106 VNVHASLLPRWRGAAPIQRAILAGDRETGISIMQMNE-GLDTGDVLAKSACVISSEDTAADLHDRLSLIGADLLLESLAK 184 (314)
T ss_dssp EEEESSCTTTTBSSCHHHHHHHHTCSEEEEEEEECCS-SSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCccccCCCCccHHHHHHHcCCCeeEEEEEeeec-CCCCCCEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997 799999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCccccCCCccccccccCCCCHHHHHHHHhccCCCCCceEEEcCeEEEEEEEEeccccccccccCC
Q psy17704 152 MPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLRSDALLRP 231 (412)
Q Consensus 152 l~~G~~~~~pQd~~~aTYa~Ki~keD~~IDW~~~sA~~I~n~IRA~~p~ppa~t~~~Gk~ikI~~a~~~~~~~~~~~~~~ 231 (412)
+.+|.+.++||+++.+||++|++++|++|||+ ++|++|+|+||||+|||+||++++|+++|||+++..+.
T Consensus 185 l~~g~~~~~~Q~~~~~tya~ki~~~d~~Idw~-~~a~~I~~~iRa~~P~Pga~~~~~g~~~ki~~a~~~~~--------- 254 (314)
T 3tqq_A 185 LEKGDIKLEKQDEASATYASKIQKQEALIDWR-KSAVEIARQVRAFNPTPIAFTYFEGQPMRIWRATVVDE--------- 254 (314)
T ss_dssp HHHTCCCCBCCCGGGCCBCCCCCGGGGBCCTT-SBHHHHHHHHHHTTTTTCCEEEETTEEEEEEEEEEECC---------
T ss_pred HHcCCCCcCcCCCccccCCCCCCHHHheeccc-CCHHHHHHHHhccCCCCceEEEECCEEEEEEEEEEecC---------
Confidence 99999999999999999999999999999998 89999999999999999999999999999999886432
Q ss_pred CCCCCCCCcccccccccccccCCcccceecceeeeeecccccccccccccCCCCCCCCCCccccchhhhhccccCCCCCC
Q psy17704 232 NTSHVPRDQHSQLTSALSFLSGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRPNTSHVPRDQHSQLTSALSFLSGDTSSK 311 (412)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (412)
T Consensus 255 -------------------------------------------------------------------------------- 254 (314)
T 3tqq_A 255 -------------------------------------------------------------------------------- 254 (314)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEeCCCeEEEEecCCCeEEEeeeecCCCCCCCHHHHHccCC
Q psy17704 312 PPSETKEPPERSKEPTDRLTEEPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYL 388 (412)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~~~~~~l~v~~~~g~~~~~~~~q~~gkk~~~a~~f~~g~~ 388 (412)
.....||+|+... ++.+.|+|+|| .|.|.+||++|||+|+|.||+||++
T Consensus 255 --------------------------~~~~~pG~v~~~~-~~~l~V~~~dg-~l~i~~lq~~gkk~m~~~~f~~g~~ 303 (314)
T 3tqq_A 255 --------------------------KTDFEPGVLVDAD-KKGISIAAGSG-ILRLHQLQLPGKRVCSAGDFINAHG 303 (314)
T ss_dssp --------------------------CCSSCTTCEEEEE-TTEEEEECSBS-EEEEEEEECTTSCCEEHHHHHHHHG
T ss_pred --------------------------CCCCCCcEEEEec-CCEEEEEECCC-EEEEeEEEcCCCCccCHHHHhccCc
Confidence 0023589998654 46899999999 9999999999999999999999997
No 2
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=100.00 E-value=1.2e-65 Score=509.68 Aligned_cols=265 Identities=27% Similarity=0.418 Sum_probs=242.3
Q ss_pred eeEEEEecCC---CC-----CchHHHHHHHCCCcEEEcCCC-------ccccccCCcEEEEccCcccCChhHHhcCCCCe
Q psy17704 7 SKLEVVSSKE---GK-----HSPVIQFAQDEKLTLYRWPMD-------PDLIKDNYDIGMVVSFGHLIPSKIINAFPLGM 71 (412)
Q Consensus 7 ~~i~VVt~~~---gk-----~spVk~~A~e~GIpV~~~p~~-------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~ 71 (412)
+-+.|||.|+ || ++||+++|+++||||++ +.+ +.++++++|++|+++||+|||+++|+.+++||
T Consensus 29 ~v~~Vvt~pd~~~gRg~~l~~~pv~~~A~~~gIpv~~-~~~~~~~~~~~~l~~~~~Dliv~~~y~~ilp~~~l~~~~~g~ 107 (317)
T 3rfo_A 29 DVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIPVLQ-PLRIREKDEYEKVLALEPDLIVTAAFGQIVPNEILEAPKYGC 107 (317)
T ss_dssp EEEEEECCCCCEETTTTEECCCHHHHHHHHTTCCEEC-CSCTTSHHHHHHHHHHCCSEEEESSCCSCCCHHHHHSSTTCE
T ss_pred cEEEEEeCCCcccCCCcccCCCHHHHHHHHcCCCEEc-cccCCCHHHHHHHHhcCCCEEEEcCchhhCCHHHHhhCcCCE
Confidence 4477899987 33 69999999999999998 432 12567899999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy17704 72 INVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRD 151 (412)
Q Consensus 72 INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L~~ 151 (412)
||+||||||+|||++|++|||++|+++||||+|+|++ ++|+||||+|+.++|.++||+.+|++|++.++++++.++|+.
T Consensus 108 iNiHpSlLP~yRG~~pi~~Ai~~G~~~tGvTih~~~~-~~DtG~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~ 186 (317)
T 3rfo_A 108 INVHASLLPELRGGAPIHYAIMEGKEKTGITIMYMVE-KLDAGDILTQVEVEIEERETTGSLFDKLSEAGAHLLSKTVPL 186 (317)
T ss_dssp EEEESSCTTSSBSSCHHHHHHHTTCSEEEEEEEECCS-STTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCccCcCCCCcCHHHHHHHcCCCceEEEEEEEcc-cCCCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997 799999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCccccCCCccccccccCCCCHHHHHHHHhccCCCCCceEEEcCeEEEEEEEEeccccccccccCC
Q psy17704 152 MPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLRSDALLRP 231 (412)
Q Consensus 152 l~~G~~~~~pQd~~~aTYa~Ki~keD~~IDW~~~sA~~I~n~IRA~~p~ppa~t~~~Gk~ikI~~a~~~~~~~~~~~~~~ 231 (412)
+.+|.+.++||+++.+||++|++++|++|||+ ++|++|+|+||||+|||+||++++|+++|||++++.+.
T Consensus 187 l~~g~~~~~~Q~~~~~tya~ki~~~d~~Idw~-~~a~~i~~~iRa~~p~Pga~~~~~g~~~ki~~a~~~~~--------- 256 (317)
T 3rfo_A 187 LIQGKLEPIKQNEEEVTFAYNIKREQEKIDWT-KTGEEVYNHIRGLNPWPVAYTTLAGQVVKVWWGEKVPV--------- 256 (317)
T ss_dssp HHTTCCCCBCCCGGGCCBCCCCCHHHHBCCTT-SCHHHHHHHHHHTTTTTCCEEEETTEEEEEEEEEEEEC---------
T ss_pred HhcCCCccccCCCCcceECCCCCHHHcccCHH-HhHHHHHHHHhccCCCCceEEEECCeEEEEEEEEEecC---------
Confidence 99999999999999999999999999999998 79999999999999999999999999999999886432
Q ss_pred CCCCCCCCcccccccccccccCCcccceecceeeeeecccccccccccccCCCCCCCCCCccccchhhhhccccCCCCCC
Q psy17704 232 NTSHVPRDQHSQLTSALSFLSGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRPNTSHVPRDQHSQLTSALSFLSGDTSSK 311 (412)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (412)
.
T Consensus 257 --~----------------------------------------------------------------------------- 257 (317)
T 3rfo_A 257 --T----------------------------------------------------------------------------- 257 (317)
T ss_dssp --S-----------------------------------------------------------------------------
T ss_pred --C-----------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEeCCCeEEEEecCCCe-EEEeeeecCCCCCCCHHHHHccCCCC
Q psy17704 312 PPSETKEPPERSKEPTDRLTEEPNPIVPELTPGFVSFDRGSKLLRVRCVDGKS-ILCSQITVAGKKKMTAVDFKNGYLGK 390 (412)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~~~~~~l~v~~~~g~~-~~~~~~q~~gkk~~~a~~f~~g~~~~ 390 (412)
....||+|+... ++.+.|+|+|| . |.|.+||++|||+|+|.||+||++.+
T Consensus 258 ---------------------------~~~~pG~i~~~~-~~~l~V~~~dg-~~l~i~~lq~~gkk~m~a~~f~~g~~~~ 308 (317)
T 3rfo_A 258 ---------------------------KSAEAGTIVAIE-EDGFVVATGNE-TGVKITELQPSGKKRMSCSQFLRGTKPE 308 (317)
T ss_dssp ---------------------------SCCCTTBEEEEC-SSCEEECCSSS-EEEEEEEEEETTSCCEEHHHHHHHCCCC
T ss_pred ---------------------------CCCCCcEEEEec-CCeEEEEeCCC-CEEEEEEEEcCCCCccCHHHHhccCCCC
Confidence 023589998554 36799999999 7 99999999999999999999999755
Q ss_pred C
Q psy17704 391 V 391 (412)
Q Consensus 391 ~ 391 (412)
.
T Consensus 309 ~ 309 (317)
T 3rfo_A 309 I 309 (317)
T ss_dssp T
T ss_pred C
Confidence 3
No 3
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=100.00 E-value=2.5e-65 Score=507.64 Aligned_cols=261 Identities=31% Similarity=0.490 Sum_probs=239.9
Q ss_pred eEEEEecCC---C-----CCchHHHHHHHCCCcEEEcCCC-------ccccccCCcEEEEccCcccCChhHHhcCCCCeE
Q psy17704 8 KLEVVSSKE---G-----KHSPVIQFAQDEKLTLYRWPMD-------PDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMI 72 (412)
Q Consensus 8 ~i~VVt~~~---g-----k~spVk~~A~e~GIpV~~~p~~-------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~I 72 (412)
-+.|||.|+ | .++||+++|+++||||++ +.+ +.+.++++|++|+++||+|||+++|+.+++|||
T Consensus 33 v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~-~~~~~~~~~~~~l~~~~~Dliv~~~y~~ilp~~~l~~~~~g~i 111 (318)
T 3q0i_A 33 IIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQ-PENFKSDESKQQLAALNADLMVVVAYGLLLPKVVLDTPKLGCI 111 (318)
T ss_dssp EEEEECCCC---------CCCHHHHHHHHTTCCEEC-CSCSCSHHHHHHHHTTCCSEEEESSCCSCCCHHHHTSSTTCEE
T ss_pred EEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEc-cCcCCCHHHHHHHHhcCCCEEEEeCccccCCHHHHhhCcCCEE
Confidence 467889876 3 268999999999999998 542 136789999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q psy17704 73 NVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDM 152 (412)
Q Consensus 73 NiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L~~l 152 (412)
|+||||||+|||++|++|||++|+++||||+|+|++ ++|+||||+|+.++|.++||+.+|++|++.++++++.++|+.+
T Consensus 112 NiHpSlLP~yRG~~pi~~Ai~~G~~~tGvTih~~~~-~~D~G~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l 190 (318)
T 3q0i_A 112 NVHGSILPRWRGAAPIQRSIWAGDSETGVTIMQMDV-GLDTGDMLKIATLPIEASDTSASMYDKLAELGPQALLECLQDI 190 (318)
T ss_dssp EEESSSTTTTBSSCHHHHHHHHTCSEEEEEEEECCS-SSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCccCcCCCCcCHHHHHHHcCCCeEEEEEEEEcC-CCCCCCEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997 7999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccccCCCccccccccCCCCHHHHHHHHhccCCCCCceEEEcCeEEEEEEEEeccccccccccCCC
Q psy17704 153 PRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLRSDALLRPN 232 (412)
Q Consensus 153 ~~G~~~~~pQd~~~aTYa~Ki~keD~~IDW~~~sA~~I~n~IRA~~p~ppa~t~~~Gk~ikI~~a~~~~~~~~~~~~~~~ 232 (412)
.+|.+.++||+++.+||++|++++|++|||+ ++|++|+|+||||+|||+||++++|+++|||+++..+.
T Consensus 191 ~~g~~~~~~Q~~~~~tya~ki~~~d~~Idw~-~~a~~I~~~iRa~~P~Pga~~~~~g~~~ki~~a~~~~~---------- 259 (318)
T 3q0i_A 191 AQGTAVAVKQDDGLANYAHKLSKEEARINWS-DAATHIERCIRAFNPWPMSHFEVAENSIKVWQARVETR---------- 259 (318)
T ss_dssp HHTCCCCBCCCGGGCCBCCCCCHHHHBCCTT-SBHHHHHHHHHHTTTTTCCEEEETTEEEEEEEEEEECC----------
T ss_pred HcCCCccccCCCCCCEECCCCCHHHceeccC-CCHHHHHHHHhccCCCCceEEEECCEEEEEEEEEEecC----------
Confidence 9999999999999999999999999999998 89999999999999999999999999999999886432
Q ss_pred CCCCCCCcccccccccccccCCcccceecceeeeeecccccccccccccCCCCCCCCCCccccchhhhhccccCCCCCCC
Q psy17704 233 TSHVPRDQHSQLTSALSFLSGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRPNTSHVPRDQHSQLTSALSFLSGDTSSKP 312 (412)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (412)
.
T Consensus 260 -~------------------------------------------------------------------------------ 260 (318)
T 3q0i_A 260 -A------------------------------------------------------------------------------ 260 (318)
T ss_dssp -C------------------------------------------------------------------------------
T ss_pred -C------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEeCCCeEEEEecCCCeEEEeeeecCCCCCCCHHHHHccCC
Q psy17704 313 PSETKEPPERSKEPTDRLTEEPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYL 388 (412)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~~~~~~l~v~~~~g~~~~~~~~q~~gkk~~~a~~f~~g~~ 388 (412)
....||+|+... ++.+.|+|+|| .|.|.+||++|||+|+|.||+||++
T Consensus 261 --------------------------~~~~pG~i~~~~-~~~~~V~~~dg-~l~i~~lq~~gkk~m~a~~f~~g~~ 308 (318)
T 3q0i_A 261 --------------------------VTQTPGTIIQAD-KSGIYVATGQD-VLVLESLQIPGKKALPVQDILNARA 308 (318)
T ss_dssp --------------------------CCSCTTBEEEEE-TTEEEEECSBS-EEEEEEEECTTSCCEEHHHHHHHHT
T ss_pred --------------------------CCCCCcEEEEEc-CCEEEEEECCc-EEEEEEEEcCCCCcccHHHHhccCc
Confidence 023589998654 46899999999 8999999999999999999999997
No 4
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=100.00 E-value=3e-65 Score=506.07 Aligned_cols=261 Identities=31% Similarity=0.505 Sum_probs=238.0
Q ss_pred eEEEEecCC---CC-----CchHHHHHHHCCCcEEEcCCC-------ccccccCCcEEEEccCcccCChhHHhcCCCCeE
Q psy17704 8 KLEVVSSKE---GK-----HSPVIQFAQDEKLTLYRWPMD-------PDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMI 72 (412)
Q Consensus 8 ~i~VVt~~~---gk-----~spVk~~A~e~GIpV~~~p~~-------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~I 72 (412)
-+.|||.++ || +++|+++|+++||||++ +.+ +.+.++++|++|+++||+|||+++|+.+++|||
T Consensus 29 i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~-~~~~~~~~~~~~l~~~~~Dliv~~~y~~ilp~~il~~~~~g~i 107 (314)
T 1fmt_A 29 VVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQ-PVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCI 107 (314)
T ss_dssp EEEEECCCCBC------CBCCHHHHHHHHTTCCEEC-CSCSCSHHHHHHHHHTTCSEEEEESCCSCCCHHHHHSSTTCEE
T ss_pred EEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEe-cCCCCCHHHHHHHHhcCCCEEEEeeccccCCHHHHhhccCCEE
Confidence 356888876 32 58999999999999998 542 135688999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q psy17704 73 NVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDM 152 (412)
Q Consensus 73 NiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L~~l 152 (412)
|+||||||+|||++|++|||++|+++||||+|+|++ ++|+||||+|+.++|.++||+.+|++|++.+++++|.++|+.+
T Consensus 108 NiHpSLLP~yRG~~pi~~Ai~~G~~~tGvTih~~~~-~~D~G~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l 186 (314)
T 1fmt_A 108 NVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDV-GLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQL 186 (314)
T ss_dssp EEESSSTTTTBSSCHHHHHHHHTCSEEEEEEEECCS-SSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCcCcCCCCcCHHHHHHHcCCCceEEEEEEEcc-cCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997 7999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccccCCCccccccccCCCCHHHHHHHHhccCCCCCceEEEcCeEEEEEEEEeccccccccccCCC
Q psy17704 153 PRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLRSDALLRPN 232 (412)
Q Consensus 153 ~~G~~~~~pQd~~~aTYa~Ki~keD~~IDW~~~sA~~I~n~IRA~~p~ppa~t~~~Gk~ikI~~a~~~~~~~~~~~~~~~ 232 (412)
.+|.+.++||+++.+||++|++++|++|||+ ++|++|+|+||||+|||++|++++|+++|||++++.+.
T Consensus 187 ~~g~~~~~~Q~~~~~tya~ki~~~d~~Idw~-~~a~~i~~~iRa~~p~Pga~~~~~g~~~ki~~a~~~~~---------- 255 (314)
T 1fmt_A 187 ADGTAKPEVQDETLVTYAEKLSKEEARIDWS-LSAAQLERCIRAFNPWPMSWLEIEGQPVKVWKASVIDT---------- 255 (314)
T ss_dssp HHTCCCCBCCCGGGCCBCCCCCHHHHBCCTT-SBHHHHHHHHHHTTTTTCEEEEETTEEEEEEEEEEECC----------
T ss_pred HcCCCceecCCccccccCCCCCHHHhhhccc-ccHHHHHHHHhccCCCCceEEEECCEEEEEEEEEEccC----------
Confidence 9999999999999999999999999999998 89999999999999999999999999999999875421
Q ss_pred CCCCCCCcccccccccccccCCcccceecceeeeeecccccccccccccCCCCCCCCCCccccchhhhhccccCCCCCCC
Q psy17704 233 TSHVPRDQHSQLTSALSFLSGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRPNTSHVPRDQHSQLTSALSFLSGDTSSKP 312 (412)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (412)
T Consensus 256 -------------------------------------------------------------------------------- 255 (314)
T 1fmt_A 256 -------------------------------------------------------------------------------- 255 (314)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEeCCCeEEEEecCCCeEEEeeeecCCCCCCCHHHHHccCC
Q psy17704 313 PSETKEPPERSKEPTDRLTEEPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYL 388 (412)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~~~~~~l~v~~~~g~~~~~~~~q~~gkk~~~a~~f~~g~~ 388 (412)
....+||+|+... ++.+.|+|+|| .|.|.+||++|||+|+|.||+||++
T Consensus 256 -------------------------~~~~~pG~i~~~~-~~~~~V~~~dg-~l~i~~~q~~gkk~m~a~~~~~g~~ 304 (314)
T 1fmt_A 256 -------------------------ATNAAPGTILEAN-KQGIQVATGDG-ILNLLSLQPAGKKAMSAQDLLNSRR 304 (314)
T ss_dssp -------------------------CCCSCTTBEEEEE-TTEEEEECSBS-EEEEEEEEETTSCCEEHHHHHHHSG
T ss_pred -------------------------CCCCCCceEEEec-CCEEEEEeCCC-EEEEEEEEcCCCCCCCHHHHhccCC
Confidence 0022589998544 35799999999 8999999999999999999999997
No 5
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=100.00 E-value=4.8e-64 Score=495.52 Aligned_cols=260 Identities=23% Similarity=0.332 Sum_probs=235.8
Q ss_pred EEEEecCCC-----CCchHHHHHHHCCCcEEEcCCC------ccccccCCcEEEEccCcccCChhHHhcCCCCeEEEcCC
Q psy17704 9 LEVVSSKEG-----KHSPVIQFAQDEKLTLYRWPMD------PDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGS 77 (412)
Q Consensus 9 i~VVt~~~g-----k~spVk~~A~e~GIpV~~~p~~------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~INiHpS 77 (412)
+.|||.++. .+++|+++|+++|||+++.... +.+.++++|++|+++||+|||+++|+.+++||||+|||
T Consensus 27 ~~Vvt~~d~~~g~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~y~~ilp~~il~~~~~g~iNiHpS 106 (305)
T 2bln_A 27 SAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGS 106 (305)
T ss_dssp EEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHHTCCSEEEEESCCSCCCHHHHTTCTTCEEEEESS
T ss_pred EEEEcCCCCCCCCcCccHHHHHHHHcCCCEECCCcCCcHHHHHHHHhcCCCEEEEeccccccCHHHHhcCcCCEEEecCC
Confidence 567788762 1478999999999999994432 13567899999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy17704 78 ILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVL 157 (412)
Q Consensus 78 LLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L~~l~~G~~ 157 (412)
|||+|||++|++|||++|+++||||+|+|++ ++|+||||+|+.++|.++||+.+|++|++.++++++.++|+.+.+|.+
T Consensus 107 LLP~yRG~~pi~~ai~~G~~~tGvTih~~~~-~~D~G~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~ 185 (305)
T 2bln_A 107 LLPKYRGRAPLNWVLVNGETETGVTLHRMVK-RADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNI 185 (305)
T ss_dssp CTTTTEESCHHHHHHHTTCSEEEEEEEECCS-STTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCcCCCCccHHHHHHHcCCCcEEEEEEEECC-CccCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999997 799999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccCCCccccccccCCCCHHHHHHHHhccC-CCCCceEEEcCeEEEEEEEEeccccccccccCCCCCCC
Q psy17704 158 NAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALG-HVYPLLAQWHGVKVKLHNISLDTKLRSDALLRPNTSHV 236 (412)
Q Consensus 158 ~~~pQd~~~aTYa~Ki~keD~~IDW~~~sA~~I~n~IRA~~-p~ppa~t~~~Gk~ikI~~a~~~~~~~~~~~~~~~~~~~ 236 (412)
.++||+++.+||++|++++|++|||+ ++|++|+|+||||+ |||++|++++|+++|||++++.+. .
T Consensus 186 ~~~~Q~~~~~tya~k~~~~d~~Idw~-~~a~~i~~~iRa~~~p~Pga~~~~~g~~~ki~~a~~~~~-----------~-- 251 (305)
T 2bln_A 186 LEIAQRENEATCFGRRTPDDSFLEWH-KPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPH-----------A-- 251 (305)
T ss_dssp CCBCCCGGGCCEECCCCGGGGBCCTT-SBHHHHHHHHHHTCTTSCCEEEEETTEEEEEEEEEEECS-----------C--
T ss_pred ceecCCccccccCCCCCHHHcEECCc-CCHHHHHHHHhccCCCCCceEEEECCEEEEEEEEEEccC-----------C--
Confidence 99999999999999999999999998 89999999999995 999999999999999999875422 0
Q ss_pred CCCcccccccccccccCCcccceecceeeeeecccccccccccccCCCCCCCCCCccccchhhhhccccCCCCCCCCCCC
Q psy17704 237 PRDQHSQLTSALSFLSGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRPNTSHVPRDQHSQLTSALSFLSGDTSSKPPSET 316 (412)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (412)
T Consensus 252 -------------------------------------------------------------------------------- 251 (305)
T 2bln_A 252 -------------------------------------------------------------------------------- 251 (305)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEeCCCeEEEEecCCCeEEEeeeecCCCCCCCHHHHHccCCC
Q psy17704 317 KEPPERSKEPTDRLTEEPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLG 389 (412)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~~~~~~l~v~~~~g~~~~~~~~q~~gkk~~~a~~f~~g~~~ 389 (412)
....||+|+.. + .+.|+|+|| .|.+.++|++|||.|++.||+||+..
T Consensus 252 ----------------------~~~~pG~i~~~-~--~~~V~~~dg-~l~i~~~q~~gkk~m~~~~~~~g~~~ 298 (305)
T 2bln_A 252 ----------------------SKAQPGSVISV-A--PLLIACGDG-ALEIVTGQAGDGITMQGSQLAQTLGL 298 (305)
T ss_dssp ----------------------CCSCTTBEEEE-T--TEEEECSBS-EEEEEEEEETTSCCEEHHHHHHHHTC
T ss_pred ----------------------CCCCCCEEEEE-C--CEEEEeCCc-eEEEEEEecCCCceecHHHHHhcCCC
Confidence 01258999753 2 399999999 89999999999999999999999864
No 6
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=100.00 E-value=2.4e-62 Score=488.09 Aligned_cols=211 Identities=27% Similarity=0.409 Sum_probs=197.6
Q ss_pred eEEEEecCC--CCCchHHHHHHHCCCcEEEcCCC-------c----cccccCCcEEEEccCcccCChhHHhcCCCCeEEE
Q psy17704 8 KLEVVSSKE--GKHSPVIQFAQDEKLTLYRWPMD-------P----DLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINV 74 (412)
Q Consensus 8 ~i~VVt~~~--gk~spVk~~A~e~GIpV~~~p~~-------~----~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~INi 74 (412)
-+.|||.|+ +++++|+++|+++|||+++++.. . .++++++|++|+++||+|||+++|+.+++||||+
T Consensus 48 i~~Vvt~pd~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~~ilp~~il~~~~~g~iNi 127 (329)
T 2bw0_A 48 VVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAELNVLPFCSQFIPMEIISAPRHGSIIY 127 (329)
T ss_dssp EEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCCSEEEESSCSSCCCHHHHTCSTTCEEEE
T ss_pred EEEEEeCCCcCCCCCHHHHHHHHcCCCEEecCcccccccccHHHHHHHHhcCCCEEEEeehhhhCCHHHHhhCcCCEEEE
Confidence 356888887 56799999999999999995431 1 2567899999999999999999999999999999
Q ss_pred cCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHH-HHHHHHHHHHHHHHhcC
Q psy17704 75 HGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNK-LALVGGQLLLECVRDMP 153 (412)
Q Consensus 75 HpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~k-La~~g~~LL~e~L~~l~ 153 (412)
||||||+|||++|++|||++|+++||||+|+|++ ++|+||||+|+.++|.++||+++|++| ++.+++++|.++|+.+.
T Consensus 128 HpSLLP~yRG~~pi~~Ai~~G~~~tGvTvh~~~~-~lDtG~Ii~Q~~v~I~~~dt~~~L~~r~l~~~~~~ll~~~l~~l~ 206 (329)
T 2bw0_A 128 HPSLLPRHRGASAINWTLIHGDKKGGFSIFWADD-GLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIKGMVQAVRLIA 206 (329)
T ss_dssp ESSCTTTTBSSCHHHHHHHTTCSEEEEEEEECCS-SSSCSCEEEEEEEECCTTCCHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred cCCcCcCCCCcCHHHHHHHcCCCcEEEEEEEECC-cCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997 799999999999999999999999999 58999999999999999
Q ss_pred CCCCCCCCCCCCCCccccCCCccccccccCCCCHHHHHHHHhccCCCCCceEEEcCeEEEEEEEEec
Q psy17704 154 RCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLD 220 (412)
Q Consensus 154 ~G~~~~~pQd~~~aTYa~Ki~keD~~IDW~~~sA~~I~n~IRA~~p~ppa~t~~~Gk~ikI~~a~~~ 220 (412)
+|.+.++||+++.+||++|++++|++|||+ ++|++|+|+||||+||||+|++++|+++|||++++.
T Consensus 207 ~g~~~~~~Q~~~~~tya~ki~~~d~~Idw~-~~a~~I~~~iRa~~p~Pga~t~~~g~~~ki~~a~~~ 272 (329)
T 2bw0_A 207 EGKAPRLPQPEEGATYEGIQKKETAKINWD-QPAEAIHNWIRGNDKVPGAWTEACEQKLTFFNSTLN 272 (329)
T ss_dssp HTCCCCBCCCSTTCCBCCCCCGGGGBCCCS-SCHHHHHHHHHTTTTTTCCEEEETTEEEEEEEEESC
T ss_pred cCCCCcccCCccccccccCCCHHHcEEccc-CCHHHHHHHHhccCCCCceEEEECCEEEEEEEEEEe
Confidence 999999999999999999999999999998 899999999999999999999999999999998754
No 7
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=100.00 E-value=1.2e-57 Score=484.95 Aligned_cols=260 Identities=23% Similarity=0.336 Sum_probs=234.3
Q ss_pred EEEEecCCCC-----CchHHHHHHHCCCcEEEcCCC------ccccccCCcEEEEccCcccCChhHHhcCCCCeEEEcCC
Q psy17704 9 LEVVSSKEGK-----HSPVIQFAQDEKLTLYRWPMD------PDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGS 77 (412)
Q Consensus 9 i~VVt~~~gk-----~spVk~~A~e~GIpV~~~p~~------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~INiHpS 77 (412)
+.|||.++.. +++|+++|+++|||+++.... +.+.++++|++|+++||+|||+++|+.+++||||+|||
T Consensus 27 ~~v~t~~~~~~~~~~~~~~~~~a~~~~ip~~~~~~~~~~~~~~~l~~~~~d~iv~~~~~~il~~~~l~~~~~~~iNiH~s 106 (660)
T 1z7e_A 27 SAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGS 106 (660)
T ss_dssp EEEECCCC--------CCHHHHHHHHTCCEECCSCTTSHHHHHHHHHHCCSEEEEESCCSCCCHHHHTTCTTCEEEEESS
T ss_pred EEEEeCCCCCccCcCccHHHHHHHHcCCCEeccCCCCcHHHHHHHHhcCCCEEEEcCcccccCHHHHhcCCCCeEEecCC
Confidence 4567777621 378999999999999994432 12567899999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy17704 78 ILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVL 157 (412)
Q Consensus 78 LLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L~~l~~G~~ 157 (412)
|||+|||++|++|||++|+++||||+|+|++ ++|+||||.|+.++|.++||.++|++|+..++++++.++|+.+.+|.+
T Consensus 107 lLP~~rG~~p~~~ai~~g~~~~G~t~~~~~~-~~D~G~ii~q~~~~i~~~dt~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 185 (660)
T 1z7e_A 107 LLPKYRGRAPLNWVLVNGETETGVTLHRMVK-RADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNI 185 (660)
T ss_dssp STTTTCSSCHHHHHHHTTCSEEEEEEEECCS-STTTSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCCCCccHHHHHHHcCCCcEEEEEEEECC-CccCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999997 799999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccCCCccccccccCCCCHHHHHHHHhccC-CCCCceEEEcCeEEEEEEEEeccccccccccCCCCCCC
Q psy17704 158 NAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALG-HVYPLLAQWHGVKVKLHNISLDTKLRSDALLRPNTSHV 236 (412)
Q Consensus 158 ~~~pQd~~~aTYa~Ki~keD~~IDW~~~sA~~I~n~IRA~~-p~ppa~t~~~Gk~ikI~~a~~~~~~~~~~~~~~~~~~~ 236 (412)
.++||+++.+||++|++++|++|||+ ++|++|+|+||||+ |||++|++++|+++|||++++.+.
T Consensus 186 ~~~~q~~~~~~~~~~~~~~~~~idw~-~~a~~i~~~ira~~~p~p~a~~~~~~~~~~i~~~~~~~~-------------- 250 (660)
T 1z7e_A 186 LEIAQRENEATCFGRRTPDDSFLEWH-KPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPH-------------- 250 (660)
T ss_dssp CCBCCCGGGCCCCCCCCGGGGBCCTT-SBHHHHHHHHHHTCTTSCCEEEEETTEEEEEEECCEECC--------------
T ss_pred ceeeCCCccCccCCCCCHHHcEeCCC-CCHHHHHHHHhccCCCCCceEEEECCEEEEEEEEEEccc--------------
Confidence 99999999999999999999999998 89999999999995 999999999999999998765321
Q ss_pred CCCcccccccccccccCCcccceecceeeeeecccccccccccccCCCCCCCCCCccccchhhhhccccCCCCCCCCCCC
Q psy17704 237 PRDQHSQLTSALSFLSGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRPNTSHVPRDQHSQLTSALSFLSGDTSSKPPSET 316 (412)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (412)
T Consensus 251 -------------------------------------------------------------------------------- 250 (660)
T 1z7e_A 251 -------------------------------------------------------------------------------- 250 (660)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEeCCCeEEEEecCCCeEEEeeeecCCCCCCCHHHHHccCCC
Q psy17704 317 KEPPERSKEPTDRLTEEPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLG 389 (412)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~~~~~~l~v~~~~g~~~~~~~~q~~gkk~~~a~~f~~g~~~ 389 (412)
....+||+|+.. + + +.|+|+|| +|.|.++|++|||.|++.||+||+..
T Consensus 251 ---------------------~~~~~pG~i~~~-~-~-~~v~~~~g-~~~i~~~q~~g~~~m~a~d~l~g~~l 298 (660)
T 1z7e_A 251 ---------------------ASKAQPGSVISV-A-P-LLIACGDG-ALEIVTGQAGDGITMQGSQLAQTLGL 298 (660)
T ss_dssp ---------------------CCSSCTTSEEEE-T-T-EEEECSBS-EEEECEEEETTSCCEEHHHHHHTTTC
T ss_pred ---------------------cCCCCCcEEEec-C-c-EEEEeCCC-eEEEEEeccCCCCcccHHHHHhhcCC
Confidence 001258999853 2 3 99999999 89999999999999999999999864
No 8
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=100.00 E-value=5.7e-47 Score=366.85 Aligned_cols=183 Identities=19% Similarity=0.191 Sum_probs=165.6
Q ss_pred HCCCcEEEcCCC---ccccccCCcEEEEccCcccCChhHHhcCCCCeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEE
Q psy17704 28 DEKLTLYRWPMD---PDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISII 104 (412)
Q Consensus 28 e~GIpV~~~p~~---~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh 104 (412)
+++|.++..... +.+++++||++|+++||+|||+++|+. +||||+||||||+|||++|++|||++|+++||||+|
T Consensus 56 ~h~V~~~~~~~~~~~~~L~~~~pDliv~~~y~~ilp~~il~~--~g~iNiHpSLLP~yRG~~pi~~Ai~~G~~~tGvTih 133 (260)
T 1zgh_A 56 KYNTTIITNKDELTFEKVKLINPEYILFPHWSWIIPKEIFEN--FTCVVFHMTDLPFGRGGSPLQNLIERGIKKTKISAI 133 (260)
T ss_dssp TEEEEEECSGGGCCHHHHHHHCCSEEEESSCCSCCCHHHHTT--SCEEEEESSCTTTTEESCHHHHHHHTTCCEEEEEEE
T ss_pred cCceEEEeCCCHHHHHHHHhcCCCEEEEeccccccCHHHHcc--CCEEEEeCCcCCCCCCcCHHHHHHHcCCCcEEEEEE
Confidence 466676642221 236788999999999999999999995 789999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCccccCCCccccccccC
Q psy17704 105 RVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGG-QLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWN 183 (412)
Q Consensus 105 ~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~-~LL~e~L~~l~~G~~~~~pQd~~~aTYa~Ki~keD~~IDW~ 183 (412)
+|++ ++|+||||+|+.++|. ||..+|++|++.+++ ++|.+++ +|.+.++||+ +.++|++|++++|+.|||+
T Consensus 134 ~~~~-~lDtG~Ii~Q~~v~I~--dt~~~L~~rl~~~~~~~ll~~~~----~g~~~~~pQ~-~~~ty~~k~~k~d~~Idw~ 205 (260)
T 1zgh_A 134 KVDG-GIDTGDIFFKRDLDLY--GTAEEIFMRASKIIFNDMIPELL----TKRPVPQKQE-GEATVFQRRKPEQSEISPD 205 (260)
T ss_dssp ECCS-SSSCSCEEEEEEEECC--SCHHHHHHHHHHHHHHTHHHHHH----HHCCCCBCCC-SCCCEECCCCGGGGBCCTT
T ss_pred EEcc-CccCCCeEEEEEEecc--CCHHHHHHHHHHHHHHHHHHHHH----cCCCcceeCC-CCceeeecCCHHHcEECcc
Confidence 9997 7999999999999999 899999999999999 8877766 4678899998 6889999999999999998
Q ss_pred CCCHHHHHHHHhccC--CCCCceEEEcCeEEEEEEEEecc
Q psy17704 184 TMSSVQVYNLHRALG--HVYPLLAQWHGVKVKLHNISLDT 221 (412)
Q Consensus 184 ~~sA~~I~n~IRA~~--p~ppa~t~~~Gk~ikI~~a~~~~ 221 (412)
++|++|+|+||||+ ||||||++++|+++|||++++.+
T Consensus 206 -~~a~~I~~~IRa~~~~p~PgA~t~~~g~~~ki~~a~~~~ 244 (260)
T 1zgh_A 206 -FDLEKIYDYIRMLDGEGYPRAFIKYGKYRLEFSRASMKN 244 (260)
T ss_dssp -SCHHHHHHHHHHTCSTTCCCCEEEETTEEEEEEEEEEET
T ss_pred -cCHHHHHHHHHhhCCCCCCcEEEEECCEEEEEEEEEEcC
Confidence 89999999999997 89999999999999999998754
No 9
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=100.00 E-value=2.7e-38 Score=297.33 Aligned_cols=167 Identities=20% Similarity=0.290 Sum_probs=131.8
Q ss_pred eeE-EEEecCCCCCchHHHHHHHCCCcEEEcCCC-------------ccccccCCcEEEEccCcccCChhHHhcCCCCeE
Q psy17704 7 SKL-EVVSSKEGKHSPVIQFAQDEKLTLYRWPMD-------------PDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMI 72 (412)
Q Consensus 7 ~~i-~VVt~~~gk~spVk~~A~e~GIpV~~~p~~-------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~I 72 (412)
.+| .|||.+ ...+++++|+++|||++.++.. +.+.++++|++|+++|++|||+++|+.+++|+|
T Consensus 31 ~~I~~Vit~~--~~~~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~~il~~~~l~~~~~~~i 108 (212)
T 3av3_A 31 ARVALLVCDR--PGAKVIERAARENVPAFVFSPKDYPSKAAFESEILRELKGRQIDWIALAGYMRLIGPTLLSAYEGKIV 108 (212)
T ss_dssp EEEEEEEESS--TTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCCSCCCHHHHHHTTTCEE
T ss_pred CeEEEEEeCC--CCcHHHHHHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcCCCEEEEchhhhhCCHHHHhhhcCCEE
Confidence 344 345554 3579999999999999975431 125678999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q psy17704 73 NVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDM 152 (412)
Q Consensus 73 NiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L~~l 152 (412)
|+||||||+|||++|++|||++|+++||+|+|+|++ ++|+||||+|+.++|.++||+++|++|+..++.+++.++|+.+
T Consensus 109 NiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~-~~D~G~Ii~Q~~v~I~~~dt~~~L~~r~~~~~~~ll~~~l~~~ 187 (212)
T 3av3_A 109 NIHPSLLPAFPGKDAIGQAYRAGVSETGVTVHYVDE-GMDTGPVIAQRVVPIVPGEPIEALEERIHQVEHELYPTVLRML 187 (212)
T ss_dssp EEESSCTTSSCSTTHHHHHHHHTCSEEEEEEEECCS-SSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCcCCCCCCcCHHHHHHHcCCCeEEEEEEEECC-CCCCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997 7999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccccCCCcccccc
Q psy17704 153 PRCVLNAPAQPDEGATYANKIDWSYSVI 180 (412)
Q Consensus 153 ~~G~~~~~pQd~~~aTYa~Ki~keD~~I 180 (412)
.+|.+ |.++.++|+.+.+.+|.++
T Consensus 188 ~~g~~----~~~~~~~~~~~~t~~~~~~ 211 (212)
T 3av3_A 188 LGEKE----QQEERIENDGSETSIDQRV 211 (212)
T ss_dssp HC--------------------------
T ss_pred HcCCC----ccccceeecCCcccccccc
Confidence 98865 6677888999988888765
No 10
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=100.00 E-value=1.4e-37 Score=293.04 Aligned_cols=161 Identities=20% Similarity=0.296 Sum_probs=144.7
Q ss_pred CCcceeeEEEEecCCCCCchHHHHHHHCCCcEEEcCCC-------------ccccccCCcEEEEccCcccCChhHHhcCC
Q psy17704 2 TNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD-------------PDLIKDNYDIGMVVSFGHLIPSKIINAFP 68 (412)
Q Consensus 2 ~~~li~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~-------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~ 68 (412)
.|++..+|.+|.+.. ...+++++|+++|||++.++.. +.++++++|++|+++|++|||+++|+.++
T Consensus 25 ~~~l~~eI~~Visn~-~~a~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~Il~~~~l~~~~ 103 (211)
T 3p9x_A 25 AGQLPCEVALLITDK-PGAKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYMRLVGPTLLGAYE 103 (211)
T ss_dssp TTCCSSEEEEEEESC-SSSHHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCCSCCCHHHHHHHT
T ss_pred cCCCCcEEEEEEECC-CCcHHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEeCchhhcCHHHHhhcc
Confidence 466766777776653 4689999999999999875431 12568899999999999999999999999
Q ss_pred CCeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy17704 69 LGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLEC 148 (412)
Q Consensus 69 ~G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~ 148 (412)
+|+||+||||||+|||++|++|||++|+++||+|+|+|++ ++|+||||.|+.++|.++||.++|++|+..++.+++.++
T Consensus 104 ~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~-~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~ 182 (211)
T 3p9x_A 104 GRIVNIHPSLLPAFPGLHAIEQAIRANVKVTGVTIHYVDE-GMDTGPIIAQEAVSIEEEDTLETLTTKIQAVEHRLYPAT 182 (211)
T ss_dssp TSEEEEESSCTTSSCSSCHHHHHHHTTCSEEEEEEEECCS-SSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEECCccCCCCCCccHHHHHHHcCCCeEEEEEEEEcC-CCCCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997 799999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCCC
Q psy17704 149 VRDMPRCVLNAPAQPD 164 (412)
Q Consensus 149 L~~l~~G~~~~~pQd~ 164 (412)
|+.+.+|.....-|.+
T Consensus 183 l~~l~~g~~~~~~~~~ 198 (211)
T 3p9x_A 183 LHKLLSKAENLYFQSH 198 (211)
T ss_dssp HHHHTCTTTCCSCCC-
T ss_pred HHHHHcCCcchhhhhc
Confidence 9999999887776654
No 11
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=100.00 E-value=1e-37 Score=293.94 Aligned_cols=167 Identities=17% Similarity=0.247 Sum_probs=146.6
Q ss_pred EEEEecCCCCCchHHHHHHHCCCcEEEcCCC-------------ccccccCCcEEEEccCcccCChhHHhcCCCCeEEEc
Q psy17704 9 LEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD-------------PDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVH 75 (412)
Q Consensus 9 i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~-------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~INiH 75 (412)
+.|||.++ ...++++|+++|||++.++.. +.+.+.++|++|+++|++|||+++|+.+++|+||+|
T Consensus 32 ~~Vvs~~~--~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~~il~~~~l~~~~~~~iNiH 109 (216)
T 2ywr_A 32 ELVISDNP--KAYAIERCKKHNVECKVIQRKEFPSKKEFEERMALELKKKGVELVVLAGFMRILSHNFLKYFPNKVINIH 109 (216)
T ss_dssp EEEEESCT--TCHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCCSCCCHHHHTTSTTCEEEEE
T ss_pred EEEEeCCC--ChHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhcCCCEEEEeCchhhCCHHHHhhccCCeEEEc
Confidence 35666653 567999999999999975431 125678999999999999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy17704 76 GSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRC 155 (412)
Q Consensus 76 pSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L~~l~~G 155 (412)
|||||+|||++|++|||++|+++||||+|+|++ ++|+||||.|+.++|.++||.++|++|+..++.+++.++|+.+.+|
T Consensus 110 pSLLP~yrG~~pi~~ai~~G~~~tGvTvh~v~~-~~D~G~Ii~q~~~~i~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g 188 (216)
T 2ywr_A 110 PSLIPAFQGLHAQKQAVEFGVKFSGCTVHIVDE-SVDAGPVIVQAVVPVLPEDDENTLADRILKWEHKILPQTVQWFAQD 188 (216)
T ss_dssp SSCTTTTCSTTHHHHHHHHTCSEEEEEEEECCS-SSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCcCCCCccHHHHHHHcCCCeEEEEEEEEcc-cCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999997 7999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCC--CCCccccCCCcccc
Q psy17704 156 VLNAPAQPD--EGATYANKIDWSYS 178 (412)
Q Consensus 156 ~~~~~pQd~--~~aTYa~Ki~keD~ 178 (412)
++....+.. ...+|++..+.+|.
T Consensus 189 ~~~~~~~~~~~~~~~y~~~P~~~~l 213 (216)
T 2ywr_A 189 RIIIDGRKVIVKDATYGTLPVNPAL 213 (216)
T ss_dssp CEEEETTEEEETTCCCSCSSEESCC
T ss_pred CCeecCCeeEEeCCCCCCCCChHHh
Confidence 875544321 35788888877664
No 12
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=100.00 E-value=4.9e-37 Score=288.56 Aligned_cols=157 Identities=18% Similarity=0.260 Sum_probs=135.5
Q ss_pred CcceeeEE-EEecCCCCCchHHHHHHHCCCcEEEcCCC-------------ccccccCCcEEEEccCcccCChhHHhcCC
Q psy17704 3 NTLISKLE-VVSSKEGKHSPVIQFAQDEKLTLYRWPMD-------------PDLIKDNYDIGMVVSFGHLIPSKIINAFP 68 (412)
Q Consensus 3 ~~li~~i~-VVt~~~gk~spVk~~A~e~GIpV~~~p~~-------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~ 68 (412)
+++..+|. |||.++ ....+++|+++|||++.++.. +.+.++++|++|+++|++|||+++|+.++
T Consensus 24 ~~~~~~I~~Vvs~~~--~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~~il~~~~l~~~~ 101 (209)
T 1meo_A 24 PNSSAQIDIVISNKA--AVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWN 101 (209)
T ss_dssp TTCSCEEEEEEESST--TCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEEESCCSCCCHHHHHHTT
T ss_pred CCCCcEEEEEEeCCC--ChHHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEcchhhhCCHHHHhhhc
Confidence 33434554 456553 456789999999999865431 12567899999999999999999999999
Q ss_pred CCeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy17704 69 LGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLEC 148 (412)
Q Consensus 69 ~G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~ 148 (412)
+||||+||||||+|||++|++|||++|+++||||+|+|++ ++|+||||.|+.++|.++||..+|++|+..++.+++.++
T Consensus 102 ~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~-~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~ 180 (209)
T 1meo_A 102 GKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAE-DVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAA 180 (209)
T ss_dssp TSEEEEESSSTTSSCSSCHHHHHHHHTCSEEEEEEEECCC----CCCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEccCcCcCCCCccHHHHHHHcCCCcEEEEEEEECC-CCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997 799999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCC
Q psy17704 149 VRDMPRCVLNAPAQ 162 (412)
Q Consensus 149 L~~l~~G~~~~~pQ 162 (412)
|+.+.+|.+...+|
T Consensus 181 l~~~~~g~~~~~~~ 194 (209)
T 1meo_A 181 LQLVASGTVQLGEN 194 (209)
T ss_dssp HHHHHHTSEEECTT
T ss_pred HHHHHhCCceEcCC
Confidence 99999998766655
No 13
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=100.00 E-value=7.2e-37 Score=287.84 Aligned_cols=154 Identities=16% Similarity=0.270 Sum_probs=136.8
Q ss_pred CcceeeE-EEEecCCCCCchHHHHHHHCCCcEEEcCCC-------------ccccccCCcEEEEccCcccCChhHHhcCC
Q psy17704 3 NTLISKL-EVVSSKEGKHSPVIQFAQDEKLTLYRWPMD-------------PDLIKDNYDIGMVVSFGHLIPSKIINAFP 68 (412)
Q Consensus 3 ~~li~~i-~VVt~~~gk~spVk~~A~e~GIpV~~~p~~-------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~ 68 (412)
+++..+| .|||.++ ...++++|+++|||+++++.. +.+.++++|++|+++||+|||+++|+.++
T Consensus 24 ~~~~~~i~~Vis~~~--~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~~il~~~~l~~~~ 101 (212)
T 1jkx_A 24 NKIKGTVRAVFSNKA--DAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYA 101 (212)
T ss_dssp TSSSSEEEEEEESCT--TCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEEEESSCCSCCCHHHHHHTT
T ss_pred CCCCceEEEEEeCCC--chHHHHHHHHcCCcEEEeCcccccchhhccHHHHHHHHhcCCCEEEEeChhhhCCHHHHhhcc
Confidence 4443444 4556553 567899999999999986421 12567899999999999999999999999
Q ss_pred CCeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy17704 69 LGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLEC 148 (412)
Q Consensus 69 ~G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~ 148 (412)
+|+||+||||||+|||++|++|||++|+++||||+|+|++ ++|+||||.|+.++|.++||+.+|++|+..++.+++.++
T Consensus 102 ~~~iNiHpSlLP~yrG~~pi~~ai~~G~~~tGvTvh~v~~-~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~ 180 (212)
T 1jkx_A 102 GRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTD-ELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLV 180 (212)
T ss_dssp TSEEEEESSCTTSCCSSCHHHHHHHTTCSEEEEEEEECCS-STTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEccCcccCCCCccHHHHHHHcCCCceEEEEEEEcc-cccCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997 799999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCC
Q psy17704 149 VRDMPRCVLNA 159 (412)
Q Consensus 149 L~~l~~G~~~~ 159 (412)
|+.+.+|.+..
T Consensus 181 l~~~~~g~~~~ 191 (212)
T 1jkx_A 181 ISWFADGRLKM 191 (212)
T ss_dssp HHHHHTTCEEE
T ss_pred HHHHHcCCceE
Confidence 99999887643
No 14
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=100.00 E-value=2.3e-36 Score=285.33 Aligned_cols=155 Identities=19% Similarity=0.266 Sum_probs=137.2
Q ss_pred CCcceeeEEEEecCCCCCchHHHHHHHCCCcEEEcCCC--------ccccccCCcEEEEccCcccCChhHHhcCCCCeEE
Q psy17704 2 TNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD--------PDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMIN 73 (412)
Q Consensus 2 ~~~li~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~--------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~IN 73 (412)
.+++..+|..|.++. ......++|+++|||++.++.. +.++++++|++|+++|++|||+++|+.+++|+||
T Consensus 31 ~~~~~~~I~~Vis~~-~~a~~l~~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dlivlagy~~IL~~~~l~~~~~~~iN 109 (215)
T 3kcq_A 31 TEESSVVISCVISNN-AEARGLLIAQSYGIPTFVVKRKPLDIEHISTVLREHDVDLVCLAGFMSILPEKFVTDWHHKIIN 109 (215)
T ss_dssp CC-CSEEEEEEEESC-TTCTHHHHHHHTTCCEEECCBTTBCHHHHHHHHHHTTCSEEEESSCCSCCCHHHHHHTTTSEEE
T ss_pred cCCCCcEEEEEEeCC-cchHHHHHHHHcCCCEEEeCcccCChHHHHHHHHHhCCCEEEEeCCceEeCHHHHhhccCCeEE
Confidence 345555666555542 2455789999999999986542 1357889999999999999999999999999999
Q ss_pred EcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Q psy17704 74 VHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMP 153 (412)
Q Consensus 74 iHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L~~l~ 153 (412)
+||||||+|||++|++|||++|+++||+|+|+|++ ++|+||||.|+.++|.++||.++|++|+..++.+++.++|+.+.
T Consensus 110 iHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~-~lD~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~e~~ll~~~l~~~~ 188 (215)
T 3kcq_A 110 IHPSLLPSFKGLNAQEQAYKAGVKIAGCTLHYVYQ-ELDAGPIIMQAAVPVLREDTAESLASRILAAEHVCYPKGVKLIA 188 (215)
T ss_dssp EESSCTTTTCSSCHHHHHHHHTCSEEEEEEEECCS-STTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECcccccCCCCccHHHHHHHcCCCeEEEEEEEEcC-CCCCCCEEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997 69999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy17704 154 RCVLN 158 (412)
Q Consensus 154 ~G~~~ 158 (412)
+|.+.
T Consensus 189 ~g~~~ 193 (215)
T 3kcq_A 189 QDKIK 193 (215)
T ss_dssp TTCEE
T ss_pred cCCeE
Confidence 98754
No 15
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=100.00 E-value=2.1e-36 Score=284.56 Aligned_cols=154 Identities=18% Similarity=0.203 Sum_probs=134.0
Q ss_pred CCcceeeEEEEecCCCCCchHHHHHHHCCCcEEEcCCC-------------ccccccCCcEEEEccCcccCChhHHhcCC
Q psy17704 2 TNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD-------------PDLIKDNYDIGMVVSFGHLIPSKIINAFP 68 (412)
Q Consensus 2 ~~~li~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~-------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~ 68 (412)
.|++..+|..|.++. ......++|+++|||+++++.. +.++++++|++|+++|++|||+++|+.++
T Consensus 30 ~~~l~~~I~~Visn~-~~a~~l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~il~~~~l~~~~ 108 (209)
T 4ds3_A 30 APGFPAEIVAVFSDK-AEAGGLAKAEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYMRLLSGRFIAPYE 108 (209)
T ss_dssp STTCSEEEEEEEESC-TTCTHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCCSCCCHHHHGGGT
T ss_pred cCCCCcEEEEEEECC-cccHHHHHHHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEeccccCcCHHHHhhcc
Confidence 455655666555542 2345789999999999986531 12567899999999999999999999999
Q ss_pred CCeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy17704 69 LGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLEC 148 (412)
Q Consensus 69 ~G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~ 148 (412)
+|+||+||||||+|||++|++|||++|+++||+|+|+|++ ++|+||||.|+.++|.++||..+|++|+..++.+++.++
T Consensus 109 ~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~-~~D~G~Ii~Q~~v~I~~~dt~~~L~~r~~~~~~~ll~~~ 187 (209)
T 4ds3_A 109 GRILNIHPSLLPLFPGLHTHQRALDAGMKLAGCTVHLVTE-GMDEGPILAQAAVPVLDGDTAETLAARVLKAEHRLYPLA 187 (209)
T ss_dssp TCEEEEESSCTTSSCSSCHHHHHHHTTCSEEEEEEEECCC---CCCCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEECCccccCCCChhHHHHHHHcCCCeEEEEEEEEcC-CCCCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997 699999999999999999999999999999999999999
Q ss_pred HHhcCCCCC
Q psy17704 149 VRDMPRCVL 157 (412)
Q Consensus 149 L~~l~~G~~ 157 (412)
|+.+.+|++
T Consensus 188 l~~~~~g~~ 196 (209)
T 4ds3_A 188 LQKFAAGEK 196 (209)
T ss_dssp HHHHHCC--
T ss_pred HHHHHcCCC
Confidence 999999876
No 16
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=100.00 E-value=4.4e-36 Score=283.42 Aligned_cols=152 Identities=22% Similarity=0.330 Sum_probs=134.7
Q ss_pred ceeeEEEEecCCCCCchHHHHHHHCCCcEEEcCCC-------------ccccccCCcEEEEccCcccCChhHHhcCCCCe
Q psy17704 5 LISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD-------------PDLIKDNYDIGMVVSFGHLIPSKIINAFPLGM 71 (412)
Q Consensus 5 li~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~-------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~ 71 (412)
+..+|..|.+.. ......++|+++|||+++++.. +.++++++|++|+++|++|||+++|+.+++|+
T Consensus 30 ~~~eI~~Vis~~-~~a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~il~~~~l~~~~~~~ 108 (215)
T 3tqr_A 30 LAIEIRAVISNR-ADAYGLKRAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFMRKLGKAFVSHYSGRM 108 (215)
T ss_dssp CSEEEEEEEESC-TTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSCCSCCCHHHHHHTTTSE
T ss_pred CCCEEEEEEeCC-cchHHHHHHHHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEEccchhhCCHHHHhhccCCe
Confidence 444555554432 3456789999999999986431 12578999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy17704 72 INVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRD 151 (412)
Q Consensus 72 INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L~~ 151 (412)
||+||||||+|||++|++|||++|+++||+|+|+|++ ++|+||||.|+.++|.++||.++|++|+..++.+++.++|+.
T Consensus 109 iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~-~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~ 187 (215)
T 3tqr_A 109 INIHPSLLPKYTGLNTHERALAAGETEHGVSVHYVTE-DLDAGPLICQARLSITPQDTPETLKTRVHALEHIIYPEVLSW 187 (215)
T ss_dssp EEEESSSTTTTCSSCHHHHHHHTTCSEEEEEEEECC--CTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCcccCCCCCChhHHHHHHHcCCCeEEEEEEEEcC-CCCCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997 699999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy17704 152 MPRCVLN 158 (412)
Q Consensus 152 l~~G~~~ 158 (412)
+.+|++.
T Consensus 188 ~~~g~~~ 194 (215)
T 3tqr_A 188 FAAGRLN 194 (215)
T ss_dssp HHTTCEE
T ss_pred HHcCCeE
Confidence 9998764
No 17
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=100.00 E-value=2.7e-36 Score=284.89 Aligned_cols=149 Identities=17% Similarity=0.310 Sum_probs=134.0
Q ss_pred eeEEEEecCCCCCchHHHHHHHCCCcEEEcCCC-------------ccccccCCcEEEEccCcccCChhHHhcCCCCeEE
Q psy17704 7 SKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD-------------PDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMIN 73 (412)
Q Consensus 7 ~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~-------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~IN 73 (412)
.+|..|.+. ++.+++++|+++|||+++++.. +.++++++|++|+++|++|||+++|+.+++|+||
T Consensus 39 ~eI~~Vis~--~~a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~~iL~~~~l~~~~~~~iN 116 (215)
T 3da8_A 39 ARVVAVGVD--RECRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLN 116 (215)
T ss_dssp EEEEEEEES--SCCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECCSCCCHHHHHHHTTTEEE
T ss_pred CeEEEEEeC--CchHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCchhhCCHHHHhhccCCeEE
Confidence 345444433 2478999999999999996421 1256889999999999999999999999999999
Q ss_pred EcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Q psy17704 74 VHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMP 153 (412)
Q Consensus 74 iHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L~~l~ 153 (412)
+||||||+|||++|++|||++|+++||+|+|+|++ ++|+||||.|+.++|.++||..+|++|+..++.+++.++|+.+.
T Consensus 117 iHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~-~lD~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~ 195 (215)
T 3da8_A 117 THPALLPAFPGTHGVADALAYGVKVTGATVHLVDA-GTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVAALA 195 (215)
T ss_dssp EESSCTTSSCSTTHHHHHHHHTCSEEEEEEEECCS-SSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCcccccCCCCchHHHHHHHcCCCeEEEEEEEEcC-CCCCCCEEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997 79999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy17704 154 RCVLN 158 (412)
Q Consensus 154 ~G~~~ 158 (412)
+|.+.
T Consensus 196 ~g~~~ 200 (215)
T 3da8_A 196 THGVT 200 (215)
T ss_dssp HHCEE
T ss_pred cCCcE
Confidence 88753
No 18
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=100.00 E-value=6.1e-36 Score=284.72 Aligned_cols=147 Identities=20% Similarity=0.298 Sum_probs=133.3
Q ss_pred EEEEecCCCCCchHHHHHHHCCCcEEEcCCC-------------ccccccCCcEEEEccCcccCChhHHhcCCCCeEEEc
Q psy17704 9 LEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD-------------PDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVH 75 (412)
Q Consensus 9 i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~-------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~INiH 75 (412)
+.|||.+ ...+++++|+++|||++.++.. +.+.++++|++|+++|++|||+++|+.+++|+||+|
T Consensus 53 ~~Vvt~~--~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~~IL~~~~l~~~~~~~iNiH 130 (229)
T 3auf_A 53 AVVISDR--ADAYGLERARRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCLAGYMRLVRGPMLTAFPNRILNIH 130 (229)
T ss_dssp EEEEESS--TTCHHHHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHTTCSEEEESSCCSCCCHHHHHHSTTCEEEEE
T ss_pred EEEEcCC--CchHHHHHHHHcCCCEEEECcccccchhhccHHHHHHHHhcCCCEEEEcChhHhCCHHHHhhccCCEEEEc
Confidence 3455654 3577999999999999975431 125678999999999999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy17704 76 GSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRC 155 (412)
Q Consensus 76 pSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L~~l~~G 155 (412)
|||||+|||++|++|||++|+++||||+|+|++ ++|+||||+|+.++|.++||+++|++|+..++.+++.++|+.+.+|
T Consensus 131 pSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~-~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g 209 (229)
T 3auf_A 131 PSLLPAFPGLEAQRQALEHGVKVAGCTVHFVTA-GVDEGPIILQAAVPVLEGDTVEDLRRRILAEEHRIYPEAIRLFAEG 209 (229)
T ss_dssp SSCTTSSCSSCHHHHHHHHTCSEEEEEEEECCS-STTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCcCcCCCCcCHHHHHHHcCCCeEEEEEEEECC-CCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999997 7999999999999999999999999999999999999999999988
Q ss_pred CCC
Q psy17704 156 VLN 158 (412)
Q Consensus 156 ~~~ 158 (412)
.+.
T Consensus 210 ~~~ 212 (229)
T 3auf_A 210 RLV 212 (229)
T ss_dssp CEE
T ss_pred CcE
Confidence 753
No 19
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=100.00 E-value=9.7e-34 Score=277.53 Aligned_cols=152 Identities=18% Similarity=0.223 Sum_probs=138.2
Q ss_pred CCcceeeEEEEecCCCCCchHHHHHHHCCCcEEEcCCC------------ccccccCCcEEEEccCcccCChhHHhcCCC
Q psy17704 2 TNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD------------PDLIKDNYDIGMVVSFGHLIPSKIINAFPL 69 (412)
Q Consensus 2 ~~~li~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~ 69 (412)
+|++..+|.+|.++. ..++++|+++|||++++|.. +.+++.++|++|+++|++|||+++++.+++
T Consensus 113 ~g~l~~~i~~Visn~---~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~~il~~~~l~~~~~ 189 (286)
T 3n0v_A 113 IGQLGMDVVAVVSNH---PDLEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYMQVLSPELCRRLDG 189 (286)
T ss_dssp TTSSCCEEEEEEESS---STTHHHHHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHTTT
T ss_pred CCCCCcEEEEEEeCc---HHHHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecccccccCHHHHhhhcC
Confidence 567777888777763 33678899999999987641 125678999999999999999999999999
Q ss_pred CeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17704 70 GMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECV 149 (412)
Q Consensus 70 G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L 149 (412)
|+||+||||||+|||++|++|||.+|++++|+|+|+|++ ++|+||||.|+.++|.++||.++|.+|+..++.+++.+++
T Consensus 190 ~~iNiHpSlLP~~rG~~p~~~Ai~~G~~~~G~Tvh~v~~-~lD~GpIi~Q~~~~i~~~dt~~~L~~r~~~~e~~~l~~av 268 (286)
T 3n0v_A 190 WAINIHHSLLPGFKGAKPYHQAYNKGVKMVGATAHYINN-DLDEGPIIAQGVEVVDHSHYPEDLIAKGRDIECLTLARAV 268 (286)
T ss_dssp SEEEEEECSSTTCCCSCHHHHHHHHTCSEEEEEEEECCS-STTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEeccccccCCCCccHHHHHHHcCCCeEEEEEEEEcC-CCCCCceeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997 6999999999999999999999999999999999999999
Q ss_pred HhcCCCCC
Q psy17704 150 RDMPRCVL 157 (412)
Q Consensus 150 ~~l~~G~~ 157 (412)
+.+.+|.+
T Consensus 269 ~~~~~~~~ 276 (286)
T 3n0v_A 269 GYHIERRV 276 (286)
T ss_dssp HHHHTTCE
T ss_pred HHHHhCCE
Confidence 99988864
No 20
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=100.00 E-value=9.1e-34 Score=278.52 Aligned_cols=152 Identities=17% Similarity=0.217 Sum_probs=138.2
Q ss_pred CCcceeeEEEEecCCCCCchHHHHHHHCCCcEEEcCCC------------ccccccCCcEEEEccCcccCChhHHhcCCC
Q psy17704 2 TNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD------------PDLIKDNYDIGMVVSFGHLIPSKIINAFPL 69 (412)
Q Consensus 2 ~~~li~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~ 69 (412)
+|++..+|.+|.++. ..++.+|+++|||++++|.. +.+++.++|++|+++|++|||+++++.+++
T Consensus 118 ~g~l~~~i~~Visn~---~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~~il~~~~l~~~~~ 194 (292)
T 3lou_A 118 MGELKMDIVGIVSNH---PDFAPLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYMQVLSPEASARLAN 194 (292)
T ss_dssp HTSSCCEEEEEEESS---STTHHHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHTTT
T ss_pred cCCCCcEEEEEEeCc---HHHHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCchhhCCHHHHhhhcC
Confidence 466777888887763 34678899999999997742 125678999999999999999999999999
Q ss_pred CeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17704 70 GMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECV 149 (412)
Q Consensus 70 G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L 149 (412)
|+||+||||||+|||++|++|||.+|++++|+|+|+|++ ++|+||||.|+.++|.++||.++|.+|+..++.++|.+++
T Consensus 195 ~~iNiHpSlLP~~rG~~p~~~Ai~~G~~~~G~Tvh~v~~-~lD~G~Ii~Q~~v~i~~~dt~~~L~~r~~~~e~~~l~~av 273 (292)
T 3lou_A 195 RAINIHHSFLPGFKGAKPYHQAHARGVKLIGATAHFVTD-DLDEGPIIEQVVERVDHSYRPEQLLAVGRDVECITLARAV 273 (292)
T ss_dssp SEEEEEEECSSCCCSSCHHHHHHHHTCSEEEEEEEECCS-STTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEeCCCcCcCCCCccHHHHHHHcCCCeEEEEEEEEcC-CCcCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997 6999999999999999999999999999999999999999
Q ss_pred HhcCCCCC
Q psy17704 150 RDMPRCVL 157 (412)
Q Consensus 150 ~~l~~G~~ 157 (412)
+.+.+|.+
T Consensus 274 ~~~~~~~~ 281 (292)
T 3lou_A 274 KAFIERRV 281 (292)
T ss_dssp HHHHTTCE
T ss_pred HHHHhCCE
Confidence 99988864
No 21
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=100.00 E-value=1.4e-33 Score=278.45 Aligned_cols=152 Identities=20% Similarity=0.294 Sum_probs=138.3
Q ss_pred CCcceeeEEEEecCCCCCchHHHHHHHCCCcEEEcCCC------------ccccccCCcEEEEccCcccCChhHHhcCCC
Q psy17704 2 TNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD------------PDLIKDNYDIGMVVSFGHLIPSKIINAFPL 69 (412)
Q Consensus 2 ~~~li~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~ 69 (412)
+|++..+|.+|.++. ..++++|+++|||+++++.. +.+++.++|++|+++|++|||+++++.++.
T Consensus 128 ~g~l~~~I~~Visn~---~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym~IL~~~~l~~~~~ 204 (302)
T 3o1l_A 128 SDELDCDIACVISNH---QDLRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYMQILPPQLCREYAH 204 (302)
T ss_dssp TTCSCSEEEEEEESS---STTHHHHHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCCSCCCTTHHHHTTT
T ss_pred CCCCCcEEEEEEECc---HHHHHHHHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhhhhcCHHHHhhhhC
Confidence 567777888887763 34688999999999997531 125678999999999999999999999999
Q ss_pred CeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17704 70 GMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECV 149 (412)
Q Consensus 70 G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L 149 (412)
|+||+||||||+|||++|++||+.+|+++||+|+|+|++ ++|+||||.|+.++|.++||.++|.+|+..++.+++.+++
T Consensus 205 ~~INiHpSlLP~frG~~p~~~Ai~~G~k~tG~TvH~v~~-~lD~GpII~Q~~v~I~~~dt~~~L~~r~~~~e~~~l~~av 283 (302)
T 3o1l_A 205 QVINIHHSFLPSFVGAKPYHQASLRGVKLIGATCHYVTE-ELDAGPIIEQDVVRVSHRDSIENMVRFGRDVEKMVLARGL 283 (302)
T ss_dssp CEEEEESSCTTSSCSSCHHHHHHHHTCSEEEEEEEECCS-STTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEeCcccccCCCCccHHHHHHHcCCCeEEEEEEEECC-CCcCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997 6999999999999999999999999999999999999999
Q ss_pred HhcCCCCC
Q psy17704 150 RDMPRCVL 157 (412)
Q Consensus 150 ~~l~~G~~ 157 (412)
+.+.+|.+
T Consensus 284 ~~~~~~~v 291 (302)
T 3o1l_A 284 RAHLEDRV 291 (302)
T ss_dssp HHHHTTCE
T ss_pred HHHHhCCE
Confidence 99988764
No 22
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=100.00 E-value=5.4e-34 Score=279.60 Aligned_cols=153 Identities=19% Similarity=0.250 Sum_probs=139.9
Q ss_pred CCcceeeEEEEecCCCCCchHHHHHHHCCCcEEEcCCC------------ccccccCCcEEEEccCcccCChhHHhcCCC
Q psy17704 2 TNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD------------PDLIKDNYDIGMVVSFGHLIPSKIINAFPL 69 (412)
Q Consensus 2 ~~~li~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~ 69 (412)
+|+|..+|.+|.++ ++..++++|+++|||++++|.. +.++++++|++|+++|++|||+++++.+++
T Consensus 112 ~g~l~~~i~~Visn--~p~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~ 189 (288)
T 3obi_A 112 VGDLHMIPTAIVSN--HPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYMQILSDEMSARLAG 189 (288)
T ss_dssp TTSSCEEEEEEEES--SCGGGSCCTTTTTCCEEECCCCTTTHHHHHHHHHHHHHHHTCCEEEESSCCSCCCHHHHHHTTT
T ss_pred CCCCCeEEEEEEcC--CChhHHHHHHHcCCCEEEeCCCcccHHHHHHHHHHHHHhcCCCEEEhhhhhhhCCHHHHhhhcC
Confidence 57787788888776 4456889999999999997642 125678999999999999999999999999
Q ss_pred CeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17704 70 GMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECV 149 (412)
Q Consensus 70 G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L 149 (412)
|+||+||||||+|||++|++|||.+|++++|+|+|+|++ ++|+||||.|+.++|.++||.++|..|+..++.+++.+++
T Consensus 190 ~~iNiHpSlLP~~rG~~p~~~A~~~G~~~~G~Tvh~v~~-~~D~GpIi~Q~~v~i~~~dt~~~L~~r~~~~e~~~l~~av 268 (288)
T 3obi_A 190 RCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTS-ALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRAL 268 (288)
T ss_dssp SEEEEEEECSSCCCSSCHHHHHHHHTCSEEEEEEEECCS-STTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEeCcccccCCCCchHHHHHHHcCCCEEEEEEEEECC-CCcCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997 6999999999999999999999999999999999999999
Q ss_pred HhcCCCCC
Q psy17704 150 RDMPRCVL 157 (412)
Q Consensus 150 ~~l~~G~~ 157 (412)
+.+.+|.+
T Consensus 269 ~~~~~~~~ 276 (288)
T 3obi_A 269 HYHLDDRV 276 (288)
T ss_dssp HHHHTTCE
T ss_pred HHHHhCCE
Confidence 99998865
No 23
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=100.00 E-value=5.4e-34 Score=279.46 Aligned_cols=153 Identities=19% Similarity=0.218 Sum_probs=138.8
Q ss_pred CCcceeeEEEEecCCCCCchHHHHHHHCCCcEEEcCCC------------ccccccCCcEEEEccCcccCChhHHhcCCC
Q psy17704 2 TNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMD------------PDLIKDNYDIGMVVSFGHLIPSKIINAFPL 69 (412)
Q Consensus 2 ~~~li~~i~VVt~~~gk~spVk~~A~e~GIpV~~~p~~------------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~ 69 (412)
+|++..+|.+|+++. +.+++++|+++|||++++|.. +.+++.++|++|+++|++|||+++++.+++
T Consensus 111 ~g~l~~~i~~Visn~--~~a~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~ 188 (287)
T 3nrb_A 111 LGELDMEVVGIISNH--PREALSVSLVGDIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLARYMQILSDDLSAFLSG 188 (287)
T ss_dssp HTSSCCEEEEEEESS--CGGGCCCCCCTTSCEEECCCCGGGHHHHHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHHTT
T ss_pred CCCCCeEEEEEEeCC--hHHHHHHHHHcCCCEEEEeccCcchhhHHHHHHHHHHHhCCCEEEhhhhhhhcCHHHHhhccC
Confidence 466777888777763 333888999999999997742 125678999999999999999999999999
Q ss_pred CeEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17704 70 GMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECV 149 (412)
Q Consensus 70 G~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L 149 (412)
|+||+||||||+|||++|++||+.+|++++|+|+|+|++ ++|+||||.|+.++|.++||.++|.+|+..++.++|.+++
T Consensus 189 ~~iNiHpSlLP~~rG~~p~~~Ai~~G~k~tG~Tvh~v~~-~lD~GpIi~Q~~v~i~~~dt~~~L~~r~~~~e~~~l~~av 267 (287)
T 3nrb_A 189 RCINIHHSFLPGFKGAKPYHQAHTRGVKLIGATAHFVTA-DLDEGPIIAQDVEHVSHRDSAEDLVRKGRDIERRVLSRAV 267 (287)
T ss_dssp SEEEEESSCTTTTCSSCHHHHHHHHTCSEEEEEEEECCS-SSSCCCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEECcccccCCCCchHHHHHHHcCCCeEEEEEEEECC-CCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997 6999999999999999999999999999999999999999
Q ss_pred HhcCCCCC
Q psy17704 150 RDMPRCVL 157 (412)
Q Consensus 150 ~~l~~G~~ 157 (412)
+.+.+|.+
T Consensus 268 ~~~~~~~~ 275 (287)
T 3nrb_A 268 LLFLEDRL 275 (287)
T ss_dssp HHHHTTCE
T ss_pred HHHHcCCE
Confidence 99988865
No 24
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=65.78 E-value=15 Score=35.97 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=47.1
Q ss_pred eEEEEecCCCCCch-HH----HHHHHCCCcEEEcCCCccccccCCcEEEEccC-----------------cccCChhHHh
Q psy17704 8 KLEVVSSKEGKHSP-VI----QFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSF-----------------GHLIPSKIIN 65 (412)
Q Consensus 8 ~i~VVt~~~gk~sp-Vk----~~A~e~GIpV~~~p~~~~l~~~~pDliVvv~f-----------------g~IIp~~iL~ 65 (412)
++.+++++.=.+.+ +. +.|++.|..+....+-+. .-.++|++.+-.| ++.|..++++
T Consensus 175 ~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~e-av~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~~~l~ 253 (307)
T 2i6u_A 175 HVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHA-AAAGADVLVTDTWTSMGQENDGLDRVKPFRPFQLNSRLLA 253 (307)
T ss_dssp EEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHH-HHTTCSEEEECCSSCTTCTTSCCCSSGGGGGGCBCHHHHH
T ss_pred EEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHH-HhcCCCEEEecceecCCcccchHHHHHHHhhcCCCHHHHh
Confidence 45555555422332 43 445588877654332111 1145788877554 4678889999
Q ss_pred cCCCCeEEEcCCCCCCCCCC
Q psy17704 66 AFPLGMINVHGSILPRWRGA 85 (412)
Q Consensus 66 ~~~~G~INiHpSLLPkYRGa 85 (412)
..+-.++-+|| ||.+||-
T Consensus 254 ~a~~~ai~mH~--lP~~Rg~ 271 (307)
T 2i6u_A 254 LADSDAIVLHC--LPAHRGD 271 (307)
T ss_dssp HSCTTCEEEEC--SCCCBTT
T ss_pred hcCCCcEEECC--CCCCCCc
Confidence 88878999997 6999973
No 25
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=65.51 E-value=16 Score=35.87 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=47.5
Q ss_pred eEEEEecCCCCCch-HH----HHHHHCCCcEEEcCCCccccccCCcEEEEccC-----------------cccCChhHHh
Q psy17704 8 KLEVVSSKEGKHSP-VI----QFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSF-----------------GHLIPSKIIN 65 (412)
Q Consensus 8 ~i~VVt~~~gk~sp-Vk----~~A~e~GIpV~~~p~~~~l~~~~pDliVvv~f-----------------g~IIp~~iL~ 65 (412)
++.+++++.=.+.+ +. +.|++.|..+....+-+. .-.++|++.+-.| ++.|..++++
T Consensus 181 ~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~e-av~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~ell~ 259 (315)
T 1pvv_A 181 DVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVK-AVKDADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVK 259 (315)
T ss_dssp EEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHH-HTTTCSEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHH
T ss_pred EEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHH-HhCCCCEEEEcceeccCcccchHHHHHHHHhcCCCHHHHh
Confidence 45555554322333 53 445588876654332111 1246788887555 4678889999
Q ss_pred cCCCCeEEEcCCCCCCCCCC
Q psy17704 66 AFPLGMINVHGSILPRWRGA 85 (412)
Q Consensus 66 ~~~~G~INiHpSLLPkYRGa 85 (412)
..+-.++-+|| ||.+||-
T Consensus 260 ~a~~~ai~mH~--lP~~Rg~ 277 (315)
T 1pvv_A 260 HAKPDYMFMHC--LPAHRGE 277 (315)
T ss_dssp TSCTTCEEEEC--SCCCBTT
T ss_pred hcCCCcEEECC--CCCCCCC
Confidence 88888999997 6999874
No 26
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=56.39 E-value=19 Score=35.53 Aligned_cols=75 Identities=12% Similarity=0.114 Sum_probs=46.4
Q ss_pred eEEEEecCCCCCch-HH----HHHHHCCCcEEEcCCCccccccCCcEEEEccC-----------------cccCChhHHh
Q psy17704 8 KLEVVSSKEGKHSP-VI----QFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSF-----------------GHLIPSKIIN 65 (412)
Q Consensus 8 ~i~VVt~~~gk~sp-Vk----~~A~e~GIpV~~~p~~~~l~~~~pDliVvv~f-----------------g~IIp~~iL~ 65 (412)
++.+++++.=.+.+ +. +.|++.|..+....+-+. .-.++|++.+-.| .+.|..++++
T Consensus 194 ~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~e-av~~aDvvyt~~w~smg~~~~~~~~~~~~~~y~v~~ell~ 272 (325)
T 1vlv_A 194 NFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEE-ALAGADVVYTDVWASMGEEDKEKERMALLKPYQVNERVME 272 (325)
T ss_dssp EEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHH-HHTTCSEEEECCCC----------CHHHHGGGCBCHHHHH
T ss_pred EEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHH-HHccCCEEEeccccccccccchHhHHHHHhhcCCCHHHHH
Confidence 44455544312332 43 445588876654332111 1146788877555 4678889999
Q ss_pred cC-CCCeEEEcCCCCCCCCCC
Q psy17704 66 AF-PLGMINVHGSILPRWRGA 85 (412)
Q Consensus 66 ~~-~~G~INiHpSLLPkYRGa 85 (412)
.. +-.++-+|| ||.+||-
T Consensus 273 ~a~k~dai~mH~--LP~~Rg~ 291 (325)
T 1vlv_A 273 MTGKSETIFMHC--LPAVKGQ 291 (325)
T ss_dssp TTCCTTCEEEEC--SCCCBTT
T ss_pred hccCCCeEEECC--CCCCCCc
Confidence 88 778999997 6999974
No 27
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=53.57 E-value=33 Score=34.06 Aligned_cols=58 Identities=12% Similarity=0.038 Sum_probs=39.7
Q ss_pred HHHHHCCCcEEEcCCCccccccCCcEEEEccC----------------cccCChhHHhcCCCCeEEEcCCCCCCCCC
Q psy17704 24 QFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSF----------------GHLIPSKIINAFPLGMINVHGSILPRWRG 84 (412)
Q Consensus 24 ~~A~e~GIpV~~~p~~~~l~~~~pDliVvv~f----------------g~IIp~~iL~~~~~G~INiHpSLLPkYRG 84 (412)
++|++.|..+....+-+. .-.++|++.+-.| .+.|..++++..+-.++-+|| ||.+||
T Consensus 226 ~~a~~~G~~v~~~~d~~e-av~~aDVvyt~~w~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHc--LPa~Rg 299 (340)
T 4ep1_A 226 AIAKETGAEIEILHNPEL-AVNEADFIYTDVWMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHC--LPAHRE 299 (340)
T ss_dssp HHHHHHCCCEEEESCHHH-HHTTCSEEEECCC------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEEC--SCCCBT
T ss_pred HHHHHcCCeEEEECCHHH-HhCCCCEEEecCccCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECC--CCCCCC
Confidence 445578877655332111 1146788877665 357888999888778999999 589997
No 28
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=47.22 E-value=49 Score=32.55 Aligned_cols=74 Identities=16% Similarity=0.123 Sum_probs=44.6
Q ss_pred eEEEEecCCCCC-chHH----HHHHHCCCcEEEcCCCccccccCCcEEEEccC-----------------cccCChhHHh
Q psy17704 8 KLEVVSSKEGKH-SPVI----QFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSF-----------------GHLIPSKIIN 65 (412)
Q Consensus 8 ~i~VVt~~~gk~-spVk----~~A~e~GIpV~~~p~~~~l~~~~pDliVvv~f-----------------g~IIp~~iL~ 65 (412)
++.+++++.=.+ ..+. +.|++.|..+....+-+. .-.++|++.+-.| ++.|..++++
T Consensus 183 ~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~e-av~~aDvvyt~~wqs~g~~~~~~~~~~~~~~y~vt~ell~ 261 (323)
T 3gd5_A 183 SIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFE-AARGAHILYTDVWTSMGQEAETQHRLQLFEQYQINAALLN 261 (323)
T ss_dssp EEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHH-HHTTCSEEEECCCC---------CCHHHHTTCCBCHHHHH
T ss_pred EEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHH-HhcCCCEEEEeceecCCCcccchHHHHHhhccCCCHHHHh
Confidence 455555543122 2343 344566877654332111 1145677776544 3468888998
Q ss_pred cCCCCeEEEcCCCCCCCCC
Q psy17704 66 AFPLGMINVHGSILPRWRG 84 (412)
Q Consensus 66 ~~~~G~INiHpSLLPkYRG 84 (412)
..+-.++-+|| ||.+||
T Consensus 262 ~ak~dai~mHc--lPa~Rg 278 (323)
T 3gd5_A 262 CAAAEAIVLHC--LPAHRG 278 (323)
T ss_dssp TSCTTCEEEEC--SCCCBT
T ss_pred hcCCCcEEECC--CCCCCC
Confidence 88878999999 589998
No 29
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=43.74 E-value=50 Score=32.17 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=38.6
Q ss_pred HHHHHCCCcEEEcCCCccccccCCcEEEEccC-----------------cccCChhHHhcCCCCeEEEcCCCCCCCCC
Q psy17704 24 QFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSF-----------------GHLIPSKIINAFPLGMINVHGSILPRWRG 84 (412)
Q Consensus 24 ~~A~e~GIpV~~~p~~~~l~~~~pDliVvv~f-----------------g~IIp~~iL~~~~~G~INiHpSLLPkYRG 84 (412)
+.|++.|..+....+-+. .-.++|++.+-.| .+.|..++++..+-.++-+|| ||.+||
T Consensus 193 ~~a~~~g~~~~~~~d~~e-av~~aDvvyt~~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~--lPa~Rg 267 (307)
T 3tpf_A 193 KQALISGAKISLGYDKFE-ALKDKDVVITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHC--LPAYRG 267 (307)
T ss_dssp HHHHHHTCEEEEESCHHH-HHTTCSEEEECCSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEEC--SCCCBT
T ss_pred HHHHHcCCeEEEEcCHHH-HhcCCCEEEecCcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECC--CCCCCC
Confidence 344477877655332111 1146788876553 356788888888878999999 589997
No 30
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=32.31 E-value=90 Score=30.72 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=45.0
Q ss_pred eEEEEecCCCCCch-HH----HHHHHCCCcEEEcCCCccccccCCcEEEEccC------------------cccCChhHH
Q psy17704 8 KLEVVSSKEGKHSP-VI----QFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSF------------------GHLIPSKII 64 (412)
Q Consensus 8 ~i~VVt~~~gk~sp-Vk----~~A~e~GIpV~~~p~~~~l~~~~pDliVvv~f------------------g~IIp~~iL 64 (412)
++.+++++.=.+.+ +. +.|++.|..+....+-+. .-.++|++.+-.| .+.|..+++
T Consensus 182 ~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~e-av~~aDvvytd~w~smg~~~~~~~er~~~~~~y~v~~~ll 260 (333)
T 1duv_G 182 DLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAK-GVEGADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMM 260 (333)
T ss_dssp EEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHH-HHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHH
T ss_pred EEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHH-HhCCCCEEEeCCccccCccccchHHHHHHhhccccCHHHH
Confidence 44455544322332 43 445588876654332111 1246899888555 467888999
Q ss_pred hcC-CCCeEEEcCCCCCCC
Q psy17704 65 NAF-PLGMINVHGSILPRW 82 (412)
Q Consensus 65 ~~~-~~G~INiHpSLLPkY 82 (412)
+.. +-.++-+|| ||.+
T Consensus 261 ~~a~~~~ai~mHc--LP~~ 277 (333)
T 1duv_G 261 QLTGNPEVKFLHC--LPAF 277 (333)
T ss_dssp HTTCCTTCEEEEC--SCCC
T ss_pred HhccCCCcEEECC--CCCC
Confidence 988 778999999 6888
No 31
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=30.84 E-value=1.2e+02 Score=29.83 Aligned_cols=57 Identities=11% Similarity=0.018 Sum_probs=37.0
Q ss_pred HHHHCCCcEEEcCCCccccccCCcEEEEccC------------------c-ccCChhHHhcCCCCeEEEcCCCCCCCCCC
Q psy17704 25 FAQDEKLTLYRWPMDPDLIKDNYDIGMVVSF------------------G-HLIPSKIINAFPLGMINVHGSILPRWRGA 85 (412)
Q Consensus 25 ~A~e~GIpV~~~p~~~~l~~~~pDliVvv~f------------------g-~IIp~~iL~~~~~G~INiHpSLLPkYRGa 85 (412)
.|++.|..+....+ .. .-.++|++.+=.| + +.|..++++..+-.++-+|| ||.+||-
T Consensus 223 ~a~~~g~~v~~~~d-~~-av~~aDvvytd~w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHc--LPa~Rg~ 298 (339)
T 4a8t_A 223 NCEVSGGSFLVTDD-AS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHC--LPATRGE 298 (339)
T ss_dssp HHHHHCCEEEEECC-GG-GGTTCSEEEECCSSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEEC--SCCCBTT
T ss_pred HHHHcCCEEEEECC-hh-HHcCCCEEEecCcccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECC--CCCCCCC
Confidence 34566766654332 22 3357898886221 2 56677788777778999999 5888863
No 32
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=29.87 E-value=1.4e+02 Score=29.73 Aligned_cols=57 Identities=12% Similarity=0.038 Sum_probs=37.2
Q ss_pred HHHHCCCcEEEcCCCccccccCCcEEEEcc-----------------C-c-ccCChhHHhcCCCCeEEEcCCCCCCCCCC
Q psy17704 25 FAQDEKLTLYRWPMDPDLIKDNYDIGMVVS-----------------F-G-HLIPSKIINAFPLGMINVHGSILPRWRGA 85 (412)
Q Consensus 25 ~A~e~GIpV~~~p~~~~l~~~~pDliVvv~-----------------f-g-~IIp~~iL~~~~~G~INiHpSLLPkYRGa 85 (412)
.|++.|..+....+ .. .-.++|++.+=. | + +.|..++++..+-.++-+|| ||.+||-
T Consensus 201 ~a~~~G~~v~~~~d-~~-av~~aDVVytd~w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHc--LPa~Rg~ 276 (355)
T 4a8p_A 201 NCEVSGGSFLVTDD-AS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHC--LPATRGE 276 (355)
T ss_dssp HHHHHSCEEEEECC-GG-GGTTCSEEEECCSSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEEC--SCCCBTT
T ss_pred HHHHcCCeEEEECC-HH-HHcCCCEEEecccccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECC--CCCCCCC
Confidence 34566766554332 22 335789888621 1 2 56778888877778999999 5888863
No 33
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=29.62 E-value=89 Score=30.79 Aligned_cols=56 Identities=18% Similarity=0.144 Sum_probs=38.1
Q ss_pred HHHHHCCCcEEEcCCCccccccCCcEEEEccC------------------cccCChhHHhcC-CCCeEEEcCCCCCCC
Q psy17704 24 QFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSF------------------GHLIPSKIINAF-PLGMINVHGSILPRW 82 (412)
Q Consensus 24 ~~A~e~GIpV~~~p~~~~l~~~~pDliVvv~f------------------g~IIp~~iL~~~-~~G~INiHpSLLPkY 82 (412)
+.|++.|..+....+ ..-.-.++|++.+-.| .+.+..++++.. +-.++-+|| ||.+
T Consensus 203 ~~a~~~G~~v~~~~d-~~eav~~aDvvytd~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHc--LP~~ 277 (335)
T 1dxh_A 203 KFAEESGAKLTLTED-PKEAVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHC--LPAF 277 (335)
T ss_dssp HHHHHHTCEEEEESC-HHHHTTTCSEEEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEEC--SCCC
T ss_pred HHHHHcCCeEEEEeC-HHHHhCCCCEEEeCCccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECC--CCCC
Confidence 345578866654332 1101246898888555 467888999988 778999999 6888
No 34
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=28.23 E-value=1.4e+02 Score=29.28 Aligned_cols=53 Identities=13% Similarity=0.072 Sum_probs=35.2
Q ss_pred CCCcEEEcCCCccccccCCcEEEEccC------------------cccCChhHHhcCCCCeEEEcCCCCCCCCC
Q psy17704 29 EKLTLYRWPMDPDLIKDNYDIGMVVSF------------------GHLIPSKIINAFPLGMINVHGSILPRWRG 84 (412)
Q Consensus 29 ~GIpV~~~p~~~~l~~~~pDliVvv~f------------------g~IIp~~iL~~~~~G~INiHpSLLPkYRG 84 (412)
.|..+....+-+. .-.++|++.+-.| .+.|..++++..+-.++-+|| ||.+||
T Consensus 218 ~g~~v~~~~d~~e-av~~aDvvytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~--lPa~Rg 288 (328)
T 3grf_A 218 TGGSIKIFHDCKK-GCEGVDVVYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNC--LPATRG 288 (328)
T ss_dssp CCCEEEEESSHHH-HHTTCSEEEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEEC--SCCCTT
T ss_pred CCCeEEEEcCHHH-HhcCCCEEEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECC--CCCCCC
Confidence 6766654332111 1146788876322 356888889888778999999 589998
No 35
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=27.15 E-value=1.1e+02 Score=30.50 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=38.2
Q ss_pred HHHHHCCCcEEEcCCCccccccCCcEEEEccC----------------cccCChhHHhcCC---CCeEEEcCCCCCCC
Q psy17704 24 QFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSF----------------GHLIPSKIINAFP---LGMINVHGSILPRW 82 (412)
Q Consensus 24 ~~A~e~GIpV~~~p~~~~l~~~~pDliVvv~f----------------g~IIp~~iL~~~~---~G~INiHpSLLPkY 82 (412)
+.|++.|..+....+-+. .-.++|++.+-.| .+.|..++++..+ -.++-+|| ||.+
T Consensus 224 ~~a~~~G~~v~~~~d~~e-av~~aDvvytd~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHc--LP~~ 298 (359)
T 2w37_A 224 GFAEKSGAKLVITDDLDE-GLKGSNVVYTDVWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHC--LPAF 298 (359)
T ss_dssp HHHHHHTCCEEEESCHHH-HHTTCSEEEECCSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEEC--SCCC
T ss_pred HHHHHcCCeEEEEeCHHH-HhcCCCEEEEcccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECC--CCCC
Confidence 445588876654332111 1246899888666 4678888998887 78999999 6887
No 36
>3hsh_A Endostatin, collagen alpha-1(XVIII) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association; 1.80A {Homo sapiens} PDB: 3hon_A
Probab=27.09 E-value=37 Score=25.28 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=22.4
Q ss_pred CCCcEEEEEeCCCeEEEEecCCCeEEEeeeec
Q psy17704 341 LTPGFVSFDRGSKLLRVRCVDGKSILCSQITV 372 (412)
Q Consensus 341 ~~pG~~~~~~~~~~l~v~~~~g~~~~~~~~q~ 372 (412)
.+.|++.|...+..|+|+..+| | .+||+
T Consensus 21 ~~eGtL~yv~d~~eLyiRVr~G-w---r~v~L 48 (56)
T 3hsh_A 21 VPEGWLIFVAEQEELYVRVQNG-F---RKVQL 48 (56)
T ss_dssp SCTTCEEEETTTTEEEEEETTE-E---EEECE
T ss_pred CCCeeEEEEEecceEEEEEcCc-e---eeeee
Confidence 4569999988888999999999 4 55554
No 37
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=26.71 E-value=1.2e+02 Score=30.27 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=35.9
Q ss_pred HHHHCCCcEEEcCCCccccccCCcEEEEccC--------------------cccCChhHHhcCCCCeEEEcCCCCCCCCC
Q psy17704 25 FAQDEKLTLYRWPMDPDLIKDNYDIGMVVSF--------------------GHLIPSKIINAFPLGMINVHGSILPRWRG 84 (412)
Q Consensus 25 ~A~e~GIpV~~~p~~~~l~~~~pDliVvv~f--------------------g~IIp~~iL~~~~~G~INiHpSLLPkYRG 84 (412)
.|++.|..+....+-+. .-.++|++.+-.| .+.|..++++..+ .++-+|| ||.+||
T Consensus 245 ~a~~~g~~v~~~~d~~e-av~~aDvVyt~~w~se~~mg~~~~~~~~~~~~~~y~vt~e~l~~a~-~ai~MHc--LP~~Rg 320 (359)
T 1zq6_A 245 NVAESGGSLQVSHDIDS-AYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTN-NGVFSHC--LPLRRN 320 (359)
T ss_dssp HHHHHSCEEEEECCHHH-HHTTCSEEEEECCCCGGGTTCCTTHHHHHGGGGGGSBCHHHHHTSS-SCEEECC--SCCCBT
T ss_pred HHHHcCCeEEEECCHHH-HhcCCCEEEECCccccccCCcchhhHHHHHHhcCCCCCHHHHHhCC-CCEEECC--CCCCCC
Confidence 44477766654332111 1145788776554 2457777888888 8999999 589997
No 38
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=25.88 E-value=2.1e+02 Score=27.71 Aligned_cols=71 Identities=6% Similarity=0.067 Sum_probs=43.1
Q ss_pred eeEEEEecCCCC-CchHHHHHHHCCCcEEEcCCCccccccCCcEEEEccC---------------cccCChhHHhcCCCC
Q psy17704 7 SKLEVVSSKEGK-HSPVIQFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSF---------------GHLIPSKIINAFPLG 70 (412)
Q Consensus 7 ~~i~VVt~~~gk-~spVk~~A~e~GIpV~~~p~~~~l~~~~pDliVvv~f---------------g~IIp~~iL~~~~~G 70 (412)
.++.+++++.=. +..+.+.|++.|..+....+-+. .-.++|++.+-.| ++.|..++++..+-.
T Consensus 182 ~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~e-av~~aDvvyt~~~q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ 260 (310)
T 3csu_A 182 NRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEE-VMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKAN 260 (310)
T ss_dssp CEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGG-TTTTCSEEEECC-----------------CCBCGGGGTTCCTT
T ss_pred CEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHH-HhcCCCEEEECCccccccCHHHHHHHhhccCCCHHHHhhcCCC
Confidence 345555554312 33477888899988655332111 1135666666544 367888899888878
Q ss_pred eEEEcCCC
Q psy17704 71 MINVHGSI 78 (412)
Q Consensus 71 ~INiHpSL 78 (412)
++-+||..
T Consensus 261 ai~mH~lP 268 (310)
T 3csu_A 261 MKVLHPLP 268 (310)
T ss_dssp CEEECCSC
T ss_pred CEEECCCC
Confidence 99999753
No 39
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=25.82 E-value=1e+02 Score=29.93 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=22.9
Q ss_pred cccCChhHHhcCCCCeEEEcCCCCCCCCCC
Q psy17704 56 GHLIPSKIINAFPLGMINVHGSILPRWRGA 85 (412)
Q Consensus 56 g~IIp~~iL~~~~~G~INiHpSLLPkYRGa 85 (412)
.+.|..++++..+-.++-+|| ||.+||-
T Consensus 240 ~y~v~~e~l~~a~~~ai~mHp--lP~~Rg~ 267 (301)
T 2ef0_A 240 GFQVNGELLKLLRPEGVFLHC--LPAHYGE 267 (301)
T ss_dssp TCCBCHHHHTTSCTTCEEEEC--SCCCBTT
T ss_pred ccccCHHHHHhcCCCcEEECC--CCCCCCC
Confidence 356788888888778999997 6999973
No 40
>3n3f_A Collagen alpha-1(XV) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association, chain selection helix; 2.00A {Homo sapiens}
Probab=25.32 E-value=75 Score=23.37 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=23.6
Q ss_pred CCCCcEEEEEeCCCeEEEEecCCCeEEEeeeec
Q psy17704 340 ELTPGFVSFDRGSKLLRVRCVDGKSILCSQITV 372 (412)
Q Consensus 340 ~~~pG~~~~~~~~~~l~v~~~~g~~~~~~~~q~ 372 (412)
..+.|++.|...+..|+|+..+| ..+||+
T Consensus 18 ~~~eGtL~yv~d~~eLyiRVr~G----wr~v~L 46 (54)
T 3n3f_A 18 LVIEGTFIYLRDSTEFFIRVRDG----WKKLQL 46 (54)
T ss_dssp GSCTTEEEEETTTTEEEEEETTE----EEECCC
T ss_pred cCCCeeEEEEEecceEEEEEcCc----eeeeec
Confidence 34569999988888999999999 466666
No 41
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=21.14 E-value=60 Score=31.65 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=22.9
Q ss_pred cccCChhHHhcCCCCeEEEcCCCCCCCCC
Q psy17704 56 GHLIPSKIINAFPLGMINVHGSILPRWRG 84 (412)
Q Consensus 56 g~IIp~~iL~~~~~G~INiHpSLLPkYRG 84 (412)
.+.|..++++..+-.++-+|| ||.+||
T Consensus 243 ~y~v~~~~l~~a~~~ai~mH~--lP~~Rg 269 (309)
T 4f2g_A 243 DWCVDEEMMSHANSDALFMHC--LPAHRG 269 (309)
T ss_dssp GGCBCHHHHTTSCTTCEEEEC--SSCCBT
T ss_pred CceeCHHHHHhcCCCeEEECC--CCCCCC
Confidence 356889999988888999999 589997
No 42
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=21.12 E-value=2.1e+02 Score=27.76 Aligned_cols=71 Identities=10% Similarity=0.083 Sum_probs=44.6
Q ss_pred eeEEEEecCCCCC-chHHHHHHHCCCcEEEcCCCccccccCCcEEEEccC----------------cccCChhHHhcCCC
Q psy17704 7 SKLEVVSSKEGKH-SPVIQFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSF----------------GHLIPSKIINAFPL 69 (412)
Q Consensus 7 ~~i~VVt~~~gk~-spVk~~A~e~GIpV~~~p~~~~l~~~~pDliVvv~f----------------g~IIp~~iL~~~~~ 69 (412)
.++.+++++.=.+ ..+.+.|++.|..+....+-.. .-.++|++.+-.| ++.+..++++..+-
T Consensus 182 ~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~e-av~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~ll~~a~~ 260 (308)
T 1ml4_A 182 VELYLISPELLRMPRHIVEELREKGMKVVETTTLED-VIGKLDVLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKD 260 (308)
T ss_dssp EEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHH-HHTTCSEEEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCT
T ss_pred CEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHH-HhcCCCEEEECCccccccCCHHHHHHHhcCcccCHHHHhhcCC
Confidence 3444555443123 3378889999988655332111 1146788877443 45678888888887
Q ss_pred CeEEEcCCC
Q psy17704 70 GMINVHGSI 78 (412)
Q Consensus 70 G~INiHpSL 78 (412)
.++-+||..
T Consensus 261 ~ai~mH~lP 269 (308)
T 1ml4_A 261 ELRIMHPLP 269 (308)
T ss_dssp TCEEECCSC
T ss_pred CCEEECCCC
Confidence 899999753
Done!