RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17704
(412 letters)
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis,
methyltransferase; HET: FON U5P; 1.2A {Escherichia coli}
SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Length = 305
Score = 186 bits (476), Expect = 2e-56
Identities = 56/203 (27%), Positives = 101/203 (49%), Gaps = 9/203 (4%)
Query: 20 SPVIQFAQDEKLTLY-----RWPMDPDLIKD-NYDIGMVVSFGHLIPSKIINAFPLGMIN 73
V + A + + +Y P+ + I + D+ + HLI +I+ P G N
Sbjct: 43 GSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFN 102
Query: 74 VHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGEL 133
+HGS+LP++RG AP+ +++G+ ETG+++ R+ + D G IV Q R +I+PDD A L
Sbjct: 103 LHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKR-ADAGAIVAQLRIAIAPDDIAITL 161
Query: 134 HNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNL 193
H+KL QLL + + + + AQ + AT + S ++W+ + ++N+
Sbjct: 162 HHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWH-KPASVLHNM 220
Query: 194 HRALGHVYPL-LAQWHGVKVKLH 215
RA+ +P + K +
Sbjct: 221 VRAVADPWPGAFSYVGNQKFTVW 243
Score = 32.1 bits (74), Expect = 0.27
Identities = 10/56 (17%), Positives = 15/56 (26%), Gaps = 6/56 (10%)
Query: 333 EPNPIVPELTPGFV-SFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGY 387
+P + PG V S L + C DG ++ M
Sbjct: 246 RVHPHASKAQPGSVISVAP----LLIACGDG-ALEIVTGQAGDGITMQGSQLAQTL 296
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation
initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1
c.65.1.1 PDB: 2fmt_A* 3r8x_A
Length = 314
Score = 181 bits (461), Expect = 4e-54
Identities = 62/184 (33%), Positives = 107/184 (58%), Gaps = 8/184 (4%)
Query: 20 SPVIQFAQDEKLTLY-----RWPMDPDLIKD-NYDIGMVVSFGHLIPSKIINAFPLGMIN 73
SPV A+++ L ++ R + L+ + D+ +VV++G ++P ++ LG IN
Sbjct: 49 SPVKVLAEEKGLPVFQPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCIN 108
Query: 74 VHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGEL 133
VHGS+LPRWRGAAPI ++ GD ETG++I+++ D G+++ + C I+ +DT+G L
Sbjct: 109 VHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVG-LDTGDMLYKLSCPITAEDTSGTL 167
Query: 134 HNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNL 193
++KLA +G Q L+ ++ + Q + TYA K+ + IDW ++S+ Q+
Sbjct: 168 YDKLAELGPQGLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDW-SLSAAQLERC 226
Query: 194 HRAL 197
RA
Sbjct: 227 IRAF 230
Score = 34.4 bits (80), Expect = 0.048
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 333 EPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGY 387
PG + + + ++V DG + + AGKK M+A D N
Sbjct: 251 SVIDTATNAAPGTI-LEANKQGIQVATGDG-ILNLLSLQPAGKKAMSAQDLLNSR 303
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A
{Coxiella burnetii}
Length = 314
Score = 180 bits (459), Expect = 9e-54
Identities = 73/184 (39%), Positives = 115/184 (62%), Gaps = 8/184 (4%)
Query: 20 SPVIQFAQDEKLTLY-----RWPMDPDLIKD-NYDIGMVVSFGHLIPSKIINAFPLGMIN 73
SPV + A+ ++ + R ++ + + N D+ +VV++G ++P K +NAF LG +N
Sbjct: 48 SPVKEIARQNEIPIIQPFSLRDEVEQEKLIAMNADVMVVVAYGLILPKKALNAFRLGCVN 107
Query: 74 VHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGEL 133
VH S+LPRWRGAAPI AIL GD ETGISI+++ D G+++ + C IS +DTA +L
Sbjct: 108 VHASLLPRWRGAAPIQRAILAGDRETGISIMQMNEG-LDTGDVLAKSACVISSEDTAADL 166
Query: 134 HNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNL 193
H++L+L+G LLLE + + + + Q + ATYA+KI ++IDW S+V++
Sbjct: 167 HDRLSLIGADLLLESLAKLEKGDIKLEKQDEASATYASKIQKQEALIDW-RKSAVEIARQ 225
Query: 194 HRAL 197
RA
Sbjct: 226 VRAF 229
Score = 34.4 bits (80), Expect = 0.050
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 333 EPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVK 392
+ PG + D K + + G + Q+ + GK+ +A DF N + K+
Sbjct: 250 TVVDEKTDFEPGVL-VDADKKGISIAAGSG-ILRLHQLQLPGKRVCSAGDFINAHGDKLI 307
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Length = 317
Score = 179 bits (458), Expect = 1e-53
Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 8/184 (4%)
Query: 20 SPVIQFAQDEKLTLY-----RWPMDPDLIKD-NYDIGMVVSFGHLIPSKIINAFPLGMIN 73
+PV A+ + + R + + + D+ + +FG ++P++I+ A G IN
Sbjct: 50 TPVKVEAEKHGIPVLQPLRIREKDEYEKVLALEPDLIVTAAFGQIVPNEILEAPKYGCIN 109
Query: 74 VHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGEL 133
VH S+LP RG API +AI+ G +TGI+I+ + K D G+I+ Q I +T G L
Sbjct: 110 VHASLLPELRGGAPIHYAIMEGKEKTGITIMYMVEK-LDAGDILTQVEVEIEERETTGSL 168
Query: 134 HNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNL 193
+KL+ G LL + V + + L Q +E T+A I IDW + +VYN
Sbjct: 169 FDKLSEAGAHLLSKTVPLLIQGKLEPIKQNEEEVTFAYNIKREQEKIDWT-KTGEEVYNH 227
Query: 194 HRAL 197
R L
Sbjct: 228 IRGL 231
Score = 35.2 bits (82), Expect = 0.028
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 333 EPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGY 387
E P+ G + V + + +++ +GKK+M+ F G
Sbjct: 252 EKVPVTKSAEAGTI-VAIEEDGFVVATGNETGVKITELQPSGKKRMSCSQFLRGT 305
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 187 bits (478), Expect = 1e-53
Identities = 56/203 (27%), Positives = 100/203 (49%), Gaps = 9/203 (4%)
Query: 20 SPVIQFAQDEKLTLY-----RWPMDPDLIKD-NYDIGMVVSFGHLIPSKIINAFPLGMIN 73
V + A + + +Y P+ + I + D+ + HLI +I+ P G N
Sbjct: 43 GSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFN 102
Query: 74 VHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGEL 133
+HGS+LP++RG AP+ +++G+ ETG+++ R+ + D G IV Q R +I+PDD A L
Sbjct: 103 LHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKR-ADAGAIVAQLRIAIAPDDIAITL 161
Query: 134 HNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNL 193
H+KL QLL + + + + AQ + AT + S ++W + ++N+
Sbjct: 162 HHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEW-HKPASVLHNM 220
Query: 194 HRALGHVYPL-LAQWHGVKVKLH 215
RA+ +P + K +
Sbjct: 221 VRAVADPWPGAFSYVGNQKFTVW 243
Score = 30.0 bits (68), Expect = 1.8
Identities = 9/55 (16%), Positives = 14/55 (25%), Gaps = 4/55 (7%)
Query: 333 EPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGY 387
+P + PG V L + C DG ++ M
Sbjct: 246 RVHPHASKAQPGSVISVAP---LLIACGDG-ALEIVTGQAGDGITMQGSQLAQTL 296
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid; 1.89A
{Vibrio cholerae}
Length = 318
Score = 179 bits (456), Expect = 2e-53
Identities = 64/184 (34%), Positives = 104/184 (56%), Gaps = 8/184 (4%)
Query: 20 SPVIQFAQDEKLTLY-----RWPMDPDLIKD-NYDIGMVVSFGHLIPSKIINAFPLGMIN 73
SPV A + + +Y + + N D+ +VV++G L+P +++ LG IN
Sbjct: 53 SPVKTLALEHNVPVYQPENFKSDESKQQLAALNADLMVVVAYGLLLPKVVLDTPKLGCIN 112
Query: 74 VHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGEL 133
VHGSILPRWRGAAPI +I GD ETG++I+++ D G++++ I DT+ +
Sbjct: 113 VHGSILPRWRGAAPIQRSIWAGDSETGVTIMQMDVG-LDTGDMLKIATLPIEASDTSASM 171
Query: 134 HNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNL 193
++KLA +G Q LLEC++D+ + A Q D A YA+K+ + I+W + ++ +
Sbjct: 172 YDKLAELGPQALLECLQDIAQGTAVAVKQDDGLANYAHKLSKEEARINW-SDAATHIERC 230
Query: 194 HRAL 197
RA
Sbjct: 231 IRAF 234
Score = 34.4 bits (80), Expect = 0.055
Identities = 9/60 (15%), Positives = 16/60 (26%), Gaps = 2/60 (3%)
Query: 333 EPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVK 392
TPG + + V ++ + + GKK + D N
Sbjct: 255 RVETRAVTQTPGTI-IQADKSGIYVATGQD-VLVLESLQIPGKKALPVQDILNARADWFS 312
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide
biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP:
b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Length = 329
Score = 173 bits (442), Expect = 3e-51
Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 16/221 (7%)
Query: 15 KEGKHSPVIQFAQDEKLTLY---RWPMDPDLIKDNY--------DIGMVVSFGHLIPSKI 63
K+GK P+ A+ + + ++ RW + D ++ ++ IP +I
Sbjct: 57 KDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAELNVLPFCSQFIPMEI 116
Query: 64 INAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCS 123
I+A G I H S+LPR RGA+ I ++HGD + G SI D G+++ Q C
Sbjct: 117 ISAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFSIFWADDG-LDTGDLLLQKECE 175
Query: 124 ISPDDTAGELHNK-LALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDW 182
+ PDDT L+N+ L G + +++ VR + QP+EGATY + I+W
Sbjct: 176 VLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGKAPRLPQPEEGATYEGIQKKETAKINW 235
Query: 183 NTMSSVQVYNLHRALGHVYPL-LAQWHGVKVKLHNISLDTK 222
+ + ++N R P + K+ N +L+T
Sbjct: 236 D-QPAEAIHNWIRGN-DKVPGAWTEACEQKLTFFNSTLNTS 274
Score = 30.6 bits (70), Expect = 0.80
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 333 EPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDF 383
+ PI PG V+ L+ D +L I + K + A +F
Sbjct: 281 DALPIPGAHRPGVVTKA---GLILFGNDDK-MLLVKNIQLEDGKMILASNF 327
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO
structural genomics, PSI, protein structure initiative,
secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1
c.65.1.1
Length = 260
Score = 142 bits (360), Expect = 5e-40
Identities = 39/225 (17%), Positives = 82/225 (36%), Gaps = 23/225 (10%)
Query: 6 ISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWP-------MDPDLIKD-NYDIGMVVSFGH 57
+ + + ++K +F + E + Y + + +K N + + +
Sbjct: 30 LMNIIIATTKSWNIKNAQKFKK-ENESKYNTTIITNKDELTFEKVKLINPEYILFPHWSW 88
Query: 58 LIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIV 117
+IP +I + H + LP RG +P+ + I G +T IS I+V D G+I
Sbjct: 89 IIPKEIFE--NFTCVVFHMTDLPFGRGGSPLQNLIERGIKKTKISAIKVDGG-IDTGDIF 145
Query: 118 RQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSY 177
+ D G + + + ++ P + + AT +
Sbjct: 146 FKRDL-----DLYGTAEEIFMRASKIIFNDMIPELLTKRPV-PQKQEGEATVFQRRKPEQ 199
Query: 178 SVIDWNTMSSVQVYNLHRALGHV-YPLLA--QWHGVKVKLHNISL 219
S I + ++Y+ R L YP A ++ +++ S+
Sbjct: 200 SEISPD-FDLEKIYDYIRMLDGEGYP-RAFIKYGKYRLEFSRASM 242
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics,
riken structural genomics/proteomics in RSGI, rossmann
fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Length = 212
Score = 61.0 bits (149), Expect = 4e-11
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 45 DNYDIGMVVSFG--HLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGIS 102
I + G LI +++A+ ++N+H S+LP + G I A G ETG++
Sbjct: 79 KGRQIDWIALAGYMRLIGPTLLSAYEGKIVNIHPSLLPAFPGKDAIGQAYRAGVSETGVT 138
Query: 103 IIRVRPKHF-----DRGEIVRQYRCSISPDDTAGELHNK 136
+ H+ D G ++ Q I P + L +
Sbjct: 139 V------HYVDEGMDTGPVIAQRVVPIVPGEPIEALEER 171
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN;
glycinamide ribonucleotide transformylase, structure;
1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Length = 215
Score = 60.2 bits (147), Expect = 8e-11
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 45 DNYDIGMVVSFG--HLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGIS 102
++ +VVS G ++ + ++ F +N H ++LP + G + A+ +G TG +
Sbjct: 86 AAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGAT 145
Query: 103 IIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNK 136
+ V D G I+ Q + D LH +
Sbjct: 146 VHLVDAG-TDTGPILAQQPVPVLDGDDEETLHER 178
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics,
PSI-biology, protein STRU initiative; 1.90A {Bacillus
halodurans}
Length = 211
Score = 60.2 bits (147), Expect = 9e-11
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 45 DNYDIGMVVSFG--HLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGIS 102
I VV G L+ ++ A+ ++N+H S+LP + G I AI TG++
Sbjct: 78 KEKQIDFVVLAGYMRLVGPTLLGAYEGRIVNIHPSLLPAFPGLHAIEQAIRANVKVTGVT 137
Query: 103 IIRVRPKHF-----DRGEIVRQYRCSISPDDTAGELHNK 136
I H+ D G I+ Q SI +DT L K
Sbjct: 138 I------HYVDEGMDTGPIIAQEAVSIEEEDTLETLTTK 170
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics,
riken structural genomics/proteomics in RSGI, rossmann
fold; 2.07A {Symbiobacterium toebii}
Length = 229
Score = 60.3 bits (147), Expect = 9e-11
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 45 DNYDIGMVVSFG--HLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGIS 102
Y + +V G L+ ++ AFP ++N+H S+LP + G A+ HG G +
Sbjct: 98 QAYGVDLVCLAGYMRLVRGPMLTAFPNRILNIHPSLLPAFPGLEAQRQALEHGVKVAGCT 157
Query: 103 IIRVRPKHF-----DRGEIVRQYRCSISPDDTAGELHNK 136
+ HF D G I+ Q + DT +L +
Sbjct: 158 V------HFVTAGVDEGPIILQAAVPVLEGDTVEDLRRR 190
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines,
nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella
burnetii}
Length = 215
Score = 58.7 bits (143), Expect = 3e-10
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 13/99 (13%)
Query: 45 DNYDIGMVVSFG--HLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGIS 102
D+YD ++V G + ++ + MIN+H S+LP++ G A+ G+ E G+S
Sbjct: 80 DHYDPKLIVLAGFMRKLGKAFVSHYSGRMINIHPSLLPKYTGLNTHERALAAGETEHGVS 139
Query: 103 IIRVRPKHF-----DRGEIVRQYRCSISPDDTAGELHNK 136
+ H+ D G ++ Q R SI+P DT L +
Sbjct: 140 V------HYVTEDLDAGPLICQARLSITPQDTPETLKTR 172
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine
biosynthesis, anti-cancer agent; HET: 138; 1.60A
{Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A*
1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Length = 212
Score = 58.6 bits (143), Expect = 3e-10
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 45 DNYDIGMVVSFG--HLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGIS 102
D Y +VV G ++ ++ + ++N+H S+LP++ G A+ +GD E G S
Sbjct: 76 DMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTS 135
Query: 103 IIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNK 136
+ V + D G ++ Q + + D+ ++ +
Sbjct: 136 VHFVTDE-LDGGPVILQAKVPVFAGDSEDDITAR 168
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold,
structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Length = 216
Score = 56.4 bits (137), Expect = 2e-09
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 45 DNYDIGMVVSFG--HLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGIS 102
+ +VV G ++ + FP +IN+H S++P ++G A+ G +G +
Sbjct: 77 KKKGVELVVLAGFMRILSHNFLKYFPNKVINIHPSLIPAFQGLHAQKQAVEFGVKFSGCT 136
Query: 103 IIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNK 136
+ V D G ++ Q + P+D L ++
Sbjct: 137 VHIVDES-VDAGPVIVQAVVPVLPEDDENTLADR 169
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.85A {Brucella melitensis BV}
Length = 209
Score = 56.0 bits (136), Expect = 2e-09
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 45 DNYDIGMVVSFG--HLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGIS 102
D ++ G L+ + I + ++N+H S+LP + G A+ G G +
Sbjct: 83 DVLKPDIICLAGYMRLLSGRFIAPYEGRILNIHPSLLPLFPGLHTHQRALDAGMKLAGCT 142
Query: 103 IIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNK 136
+ V D G I+ Q + DTA L +
Sbjct: 143 VHLVTEG-MDEGPILAQAAVPVLDGDTAETLAAR 175
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics,
niaid, seattle structural center for infectious disease,
ssgcid; 2.20A {Anaplasma phagocytophilum}
Length = 215
Score = 54.5 bits (132), Expect = 8e-09
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 45 DNYDIGMVV--SFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGIS 102
+D+ +V F ++P K + + +IN+H S+LP ++G A G G +
Sbjct: 79 REHDVDLVCLAGFMSILPEKFVTDWHHKIINIHPSLLPSFKGLNAQEQAYKAGVKIAGCT 138
Query: 103 IIRVRPKHF-----DRGEIVRQYRCSISPDDTAGELHNK 136
+ H+ D G I+ Q + +DTA L ++
Sbjct: 139 L------HYVYQELDAGPIIMQAAVPVLREDTAESLASR 171
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis;
1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A*
1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A*
1mej_B 1men_A*
Length = 209
Score = 54.4 bits (132), Expect = 9e-09
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 45 DNYDIGMVVSFG--HLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGIS 102
+ + I +V G ++ + + M+N+H S+LP ++G+ A+ G TG +
Sbjct: 76 EEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCT 135
Query: 103 IIRVRPKHF-----DRGEIVRQYRCSISPDDTAGELHNK 136
+ HF D G+I+ Q + DT L +
Sbjct: 136 V------HFVAEDVDAGQIILQEAVPVKRGDTVATLSER 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 1e-04
Identities = 43/279 (15%), Positives = 80/279 (28%), Gaps = 96/279 (34%)
Query: 3 NTLISKLEVVSSKEGKHSPVIQF----AQDEKLTLYRWPMDPD--LIKDN-YDIGMVVSF 55
L+ +++ + HS I+ Q E L + + L+ N +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN------- 255
Query: 56 GHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGE 115
+K NAF N+ IL R V L T IS+ E
Sbjct: 256 -----AKAWNAF-----NLSCKILLTTRFKQ--VTDFLSAATTTHISLDHHS-MTLTPDE 302
Query: 116 ---IVRQY-----------RCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPA 161
++ +Y + +P L+++ E +RD A
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNP------RR--LSIIA-----ESIRDGL-------A 342
Query: 162 QPDEGATYANK-----IDWSYSVID----------------------------WNTMSSV 188
D I+ S +V++ W +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 189 QVYNLHRALGHVYPLLAQW-HGVKVKLHNISLDTKLRSD 226
V + L H Y L+ + + + +I L+ K++ +
Sbjct: 403 DVMVVVNKL-HKYSLVEKQPKESTISIPSIYLELKVKLE 440
Score = 33.3 bits (75), Expect = 0.17
Identities = 50/360 (13%), Positives = 97/360 (26%), Gaps = 145/360 (40%)
Query: 17 GKHSPVIQFAQDEKLTLYRWPMDPDLIKDNYDIGMV-VSFGHLIPSKIINAFPLGMINVH 75
GK + K ++ D + ++ + N
Sbjct: 162 GKTWVALDVCLSYK------------VQCKMDFKIFWLNLKN--------------CNSP 195
Query: 76 GSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHN 135
++L ++ +L+ ++ P R + + I EL
Sbjct: 196 ETVL-------EMLQKLLY----------QIDPNWTSRSDHSSNIKLRI--HSIQAELRR 236
Query: 136 KLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVID--WNTMSSVQVYNL 193
L + C+L V+ N + +NL
Sbjct: 237 LLKS----------KPYENCLL---------------------VLLNVQNA-KAWNAFNL 264
Query: 194 H-RALGHVYPLLAQWHGVKVKLHNISLDTKLRS--DALLRPNTSHVPRDQHSQ-LTSALS 249
+ L L T+ + D L T+H+ D HS LT
Sbjct: 265 SCKIL---------------------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 250 FLSGDTSLAQWHGVKVK-----------LHNISLDTKLRSDTLLRP-NTSHVPRDQHSQ- 296
+ L ++ + + +S+ + D L N HV D+ +
Sbjct: 304 ----KSLLLKYLDCRPQDLPREVLTTNPRR-LSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 297 LTSALSFLSGDTSSKPPSETKEP-------PERSKEPTDRL--------TEEPNPIVPEL 341
+ S+L+ L P+E ++ P + PT L + +V +L
Sbjct: 359 IESSLNVLE-------PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 56/373 (15%), Positives = 96/373 (25%), Gaps = 156/373 (41%)
Query: 70 GMINVHGSILPRWRGAAPIVHAIL-----HGDHETGISI---IRVRPK----HFD--RGE 115
GM G L + + H G SI + P HF +G+
Sbjct: 1630 GM----GMDL---YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 116 IVRQ-YR---CSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAP--AQPDEGATY 169
+R+ Y D K+ + + +L+A QP A
Sbjct: 1683 RIRENYSAMIFETIVD--GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP---ALT 1737
Query: 170 ANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLRSDALL 229
A + L+S L
Sbjct: 1738 L----MEK---------------------------AAFE-------------DLKSKGL- 1752
Query: 230 RPNTSHVPRDQ----HSQLT--SALSFLSGDTSLAQWHGVKVKLHNISLDTKLRSDTLLR 283
+P D HS L +AL+ L+ S+ V+V R T+
Sbjct: 1753 ------IPADATFAGHS-LGEYAALASLADVMSIES--LVEV--------VFYRGMTM-- 1793
Query: 284 PNTSHVPRDQHSQLTSALSFLSGDTSSKPPSETKEPPERSKEPTDRLTEEPNPIVPEL-- 341
VPRD+ + + ++ + S+ E + +R+ + +V E+
Sbjct: 1794 --QVAVPRDELGRSNYGMIAINPGRVAASFSQ-----EALQYVVERVGKRTGWLV-EIVN 1845
Query: 342 --TPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVKNESDKRF 399
Q AG + A+D + V
Sbjct: 1846 YNVEN-----------------------QQYVAAGDLR--ALD----TVTNV-------- 1868
Query: 400 MNLDKQLYSKEKK 412
L+ + K +K
Sbjct: 1869 --LN---FIKLQK 1876
Score = 40.0 bits (93), Expect = 0.001
Identities = 24/126 (19%), Positives = 33/126 (26%), Gaps = 52/126 (41%)
Query: 282 LRPNT-SH--------VPRDQH---SQLTSALSFLSGDTSSKPPSETKEPPERSKEPTDR 329
RP T SH VP SQL F P EPT+
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQE--QF----NKILP------------EPTEG 47
Query: 330 LTEEPNPI-VPELTPGFVSF-----DRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDF 383
+ P EL F+ + + + + L +F
Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL--NLCLT--------------EF 91
Query: 384 KNGYLG 389
+N YL
Sbjct: 92 ENCYLE 97
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Length = 287
Score = 36.1 bits (84), Expect = 0.015
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 59 IPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHF-----DR 113
+ + IN+H S LP ++GA P A H G+ +I HF D
Sbjct: 178 LSDDLSAFLSGRCINIHHSFLPGFKGAKPYHQA-----HTRGVKLIGA-TAHFVTADLDE 231
Query: 114 GEIVRQYRCSISPDDTAGEL 133
G I+ Q +S D+A +L
Sbjct: 232 GPIIAQDVEHVSHRDSAEDL 251
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Length = 288
Score = 35.7 bits (83), Expect = 0.018
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 59 IPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHF-----DR 113
+ ++ IN+H S LP ++GA P A + G+ +I H+ D
Sbjct: 179 LSDEMSARLAGRCINIHHSFLPGFKGAKPYHQA-----FDRGVKLIGA-TAHYVTSALDE 232
Query: 114 GEIVRQYRCSISPDDTAGEL 133
G I+ Q IS DT +L
Sbjct: 233 GPIIDQDVERISHRDTPADL 252
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain,
structural genomics, joint C structural genomics, JCSG;
HET: MSE; 2.25A {Pseudomonas putida}
Length = 286
Score = 35.6 bits (83), Expect = 0.019
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 59 IPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHF-----DR 113
+ ++ IN+H S+LP ++GA P A + G+ ++ H+ D
Sbjct: 179 LSPELCRRLDGWAINIHHSLLPGFKGAKPYHQA-----YNKGVKMVGA-TAHYINNDLDE 232
Query: 114 GEIVRQYRCSISPDDTAGEL 133
G I+ Q + +L
Sbjct: 233 GPIIAQGVEVVDHSHYPEDL 252
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Length = 302
Score = 35.7 bits (83), Expect = 0.021
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 59 IPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHF-----DR 113
+P ++ + +IN+H S LP + GA P A G+ +I H+ D
Sbjct: 194 LPPQLCREYAHQVINIHHSFLPSFVGAKPYHQA-----SLRGVKLIGA-TCHYVTEELDA 247
Query: 114 GEIVRQYRCSISPDDTAGEL 133
G I+ Q +S D+ +
Sbjct: 248 GPIIEQDVVRVSHRDSIENM 267
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Length = 292
Score = 35.7 bits (83), Expect = 0.023
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Query: 59 IPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHF-----DR 113
+ + IN+H S LP ++GA P A H G+ +I HF D
Sbjct: 184 LSPEASARLANRAINIHHSFLPGFKGAKPYHQA-----HARGVKLIGA-TAHFVTDDLDE 237
Query: 114 GEIVRQYRCSISPDDTAGEL 133
G I+ Q + +L
Sbjct: 238 GPIIEQVVERVDHSYRPEQL 257
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation,
sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium
tumefaciens} PDB: 2fen_A
Length = 359
Score = 28.8 bits (65), Expect = 3.2
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 229 LRPN-TSHVPRDQHSQLTSALSFLSG 253
L H RD ++ + LS ++G
Sbjct: 221 LADRPQWHNQRDGIAEFANLLSLVTG 246
Score = 28.8 bits (65), Expect = 3.2
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 282 LRPN-TSHVPRDQHSQLTSALSFLSG 306
L H RD ++ + LS ++G
Sbjct: 221 LADRPQWHNQRDGIAEFANLLSLVTG 246
>2og2_A Putative signal recognition particle receptor; nucleotide-binding,
protein transport; 2.00A {Arabidopsis thaliana}
Length = 359
Score = 28.0 bits (63), Expect = 6.1
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 128 DTAGELHNKLALVGGQLLLECVRDMPRCVLNAP 160
DT+G LH +L+ + L+ C + + + V AP
Sbjct: 247 DTSGRLHTNYSLM--EELIACKKAVGKIVSGAP 277
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer,
nucleotide twinning, protein complex, protein transport;
HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1
c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D
2iyl_D* 2cnw_D* 2j7p_D*
Length = 304
Score = 27.5 bits (62), Expect = 7.2
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 128 DTAGELHNKLAL 139
DTAG LH K L
Sbjct: 191 DTAGRLHTKHNL 202
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein
translocation, GTP-binding, nucleotide-binding, protein
transport; 1.75A {Arabidopsis thaliana}
Length = 302
Score = 27.5 bits (62), Expect = 7.6
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 128 DTAGELHNKLALVGGQLLLECVRDMPRCVLNAP 160
DT+G LH +L+ + L+ C + + + V AP
Sbjct: 190 DTSGRLHTNYSLM--EELIACKKAVGKIVSGAP 220
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 27.8 bits (62), Expect = 7.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 128 DTAGELHNKLAL 139
DTAG L NK L
Sbjct: 382 DTAGRLQNKSHL 393
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiat YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 27.6 bits (62), Expect = 9.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 233 TSHVPRDQHSQLTSALSFLSG 253
T H RD ++ L+ +SG
Sbjct: 223 TWHSARDAVAETVQFLALVSG 243
Score = 27.6 bits (62), Expect = 9.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 286 TSHVPRDQHSQLTSALSFLSG 306
T H RD ++ L+ +SG
Sbjct: 223 TWHSARDAVAETVQFLALVSG 243
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
SCOP: a.24.13.1 c.37.1.10
Length = 306
Score = 27.5 bits (62), Expect = 9.2
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 128 DTAGELHNKLAL 139
DTAG LH K L
Sbjct: 193 DTAGRLHTKKNL 204
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.402
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,114,757
Number of extensions: 363186
Number of successful extensions: 719
Number of sequences better than 10.0: 1
Number of HSP's gapped: 693
Number of HSP's successfully gapped: 46
Length of query: 412
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 316
Effective length of database: 4,021,377
Effective search space: 1270755132
Effective search space used: 1270755132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)