RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17704
(412 letters)
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase
{Escherichia coli [TaxId: 562]}
Length = 206
Score = 82.7 bits (203), Expect = 4e-19
Identities = 48/139 (34%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 34 YRWPMDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAIL 93
+ + D+ +VV++G ++P ++ LG INVHGS+LPRWRGAAPI ++
Sbjct: 69 RPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLW 128
Query: 94 HGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMP 153
GD ETG++I+++ D G+++ + C I+ +DT+G L++KLA +G Q L+ ++ +
Sbjct: 129 AGDAETGVTIMQMDV-GLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLA 187
Query: 154 RCVLNAPAQPDEGATYANK 172
Q + TYA K
Sbjct: 188 DGTAKPEVQDETLVTYAEK 206
>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase,
GART {Human (Homo sapiens) [TaxId: 9606]}
Length = 205
Score = 63.4 bits (153), Expect = 2e-12
Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 34 YRWPMDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAIL 93
+ +D L + + DI + F ++ + + M+N+H S+LP ++G+ A+
Sbjct: 67 FDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALE 126
Query: 94 HGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDM 152
G TG ++ + D G+I+ Q + DT L ++ L ++ ++ +
Sbjct: 127 TGVTVTGCTVHF-VAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLV 184
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase
{Clostridium thermocellum [TaxId: 1515]}
Length = 164
Score = 62.4 bits (151), Expect = 3e-12
Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 8/130 (6%)
Query: 41 DLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETG 100
+ N + + + +IP +I F + H + LP RG +P+ + I G +T
Sbjct: 42 KVKLINPEYILFPHWSWIIPKEIFENF--TCVVFHMTDLPFGRGGSPLQNLIERGIKKTK 99
Query: 101 ISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAP 160
IS I+V D G+I + + TA E+ + + + + + ++
Sbjct: 100 ISAIKVDGG-IDTGDIFFKRDLDL--YGTAEEIFMRASK---IIFNDMIPELLTKRPVPQ 153
Query: 161 AQPDEGATYA 170
Q E +
Sbjct: 154 KQEGEATVFQ 163
>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase
domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 62.0 bits (149), Expect = 8e-12
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 13/168 (7%)
Query: 15 KEGKHSPVIQFAQDEKLTLYRWPM-------DPDLIKD----NYDIGMVVSFGHLIPSKI 63
K+GK P+ A+ + + ++++ PD++ ++ ++ IP +I
Sbjct: 35 KDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAELNVLPFCSQFIPMEI 94
Query: 64 INAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCS 123
I+A G I H S+LPR RGA+ I ++HGD + G SI D G+++ Q C
Sbjct: 95 ISAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFSIFWADDG-LDTGDLLLQKECE 153
Query: 124 ISPDDTAGELHNK-LALVGGQLLLECVRDMPRCVLNAPAQPDEGATYA 170
+ PDDT L+N+ L G + +++ VR + QP+EGATY
Sbjct: 154 VLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGKAPRLPQPEEGATYE 201
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase,
GART {Escherichia coli [TaxId: 562]}
Length = 209
Score = 61.0 bits (147), Expect = 2e-11
Identities = 19/116 (16%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 36 WPMDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHG 95
+ ++ D+ ++ F ++ ++ + ++N+H S+LP++ G A+ +G
Sbjct: 69 RELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENG 128
Query: 96 DHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRD 151
D E G S+ V + D G ++ Q + + D+ ++ ++ + +
Sbjct: 129 DEEHGTSVHFVTDE-LDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISW 183
>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 203
Score = 53.5 bits (127), Expect = 6e-09
Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 7/166 (4%)
Query: 14 SKEGKHSPVIQFAQDEKLTLYRWPMDPDLIKD------NYDIGMVVSFGHLIPSKIINAF 67
++ + V + A + + +Y + + D+ + HLI +I+
Sbjct: 37 GEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLA 96
Query: 68 PLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPD 127
P G N+HGS+LP++RG AP+ +++G+ ETG+++ R+ D G IV Q R +I+PD
Sbjct: 97 PAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVK-RADAGAIVAQLRIAIAPD 155
Query: 128 DTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKI 173
D A LH+KL QLL + + + + AQ + AT +
Sbjct: 156 DIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRR 201
>d1fmta1 b.46.1.1 (A:207-314) Methionyl-tRNAfmet formyltransferase,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 108
Score = 33.6 bits (76), Expect = 0.008
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 348 FDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGY 387
+ + ++V DG + + AGKK M+A D N
Sbjct: 59 LEANKQGIQVATGDG-ILNLLSLQPAGKKAMSAQDLLNSR 97
Score = 28.9 bits (64), Expect = 0.39
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 180 IDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISL 219
IDW+ +S+ Q+ RA + G VK+ S+
Sbjct: 8 IDWS-LSAAQLERCIRAFNPWPMSWLEIEGQPVKVWKASV 46
>d2bw0a1 b.46.1.1 (A:204-307) 10-formyltetrahydrofolate
dehydrogenase domain 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 104
Score = 33.6 bits (76), Expect = 0.009
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 180 IDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTK 222
I+W+ + ++N R V + K+ N +L+T
Sbjct: 8 INWD-QPAEAIHNWIRGNDKVPGAWTEACEQKLTFFNSTLNTS 49
Score = 30.5 bits (68), Expect = 0.11
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 359 CVDGKSILCSQITVAGKKKMTAVDF 383
D K +L I + K + A +F
Sbjct: 78 GNDDKMLLVKNIQLEDGKMILASNF 102
>d2blna1 b.46.1.1 (A:204-304) Polymyxin resistance protein ArnA,
domain 2 {Escherichia coli [TaxId: 562]}
Length = 101
Score = 30.9 bits (69), Expect = 0.072
Identities = 6/32 (18%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 180 IDWNTMSSVQVYNLHRALGHVYPLLAQWHGVK 211
++W+ + ++N+ RA+ +P + G +
Sbjct: 5 LEWH-KPASVLHNMVRAVADPWPGAFSYVGNQ 35
Score = 30.5 bits (68), Expect = 0.11
Identities = 1/29 (3%), Positives = 3/29 (10%)
Query: 359 CVDGKSILCSQITVAGKKKMTAVDFKNGY 387
++ M
Sbjct: 65 ACGDGALEIVTGQAGDGITMQGSQLAQTL 93
>d2av5a1 d.58.59.1 (A:15-120) RNase P protein component 2, Rnp2
{Pyrococcus furiosus [TaxId: 2261]}
Length = 106
Score = 25.4 bits (56), Expect = 5.8
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 5/62 (8%)
Query: 52 VVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHF 111
V+S +I A + G + G A ++ D T IIR H
Sbjct: 9 VISENQFNKDEIKEAIWNACLRTLGEL-----GTAKAKPWLIKFDETTQTGIIRSDRNHV 63
Query: 112 DR 113
Sbjct: 64 YD 65
>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 102
Score = 25.0 bits (55), Expect = 7.4
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 350 RGSKLLRVRCVDGKSILCSQITVAGKKK 377
G+ +RVRC+DGK+ L + G+ K
Sbjct: 30 LGASRVRVRCLDGKTRLGR---IPGRLK 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.402
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,491,774
Number of extensions: 68690
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 16
Length of query: 412
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 324
Effective length of database: 1,199,356
Effective search space: 388591344
Effective search space used: 388591344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)