BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17706
         (154 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
           O- Methyltransferase From M. Crystallinum
 pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
           O- Methyltransferase From M. Crystallinum
          Length = 237

 Score = 28.9 bits (63), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 40  TNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDF 89
           T+P+  +L    +      K + V    G S+L + +++    K+TA+DF
Sbjct: 54  TSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDF 103


>pdb|1S6Y|A Chain A, 2.3a Crystal Structure Of Phospho-Beta-Glucosidase
          Length = 450

 Score = 28.5 bits (62), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 62  RVRCVDGKSILCSQITVAG---KKKMTAVDFKNGYLGKVKNESDKRYKGMSTCPHSL 115
           R R +DG   + +Q  V G   + K   +  K G +G+  N     +KG+ T P  L
Sbjct: 77  RRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVIL 133


>pdb|3LQZ|B Chain B, Crystal Structure Of Hla-dp2
          Length = 212

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 112 PHSLTTPSGIGPCSHDGMTLCQTTDRFHSTNQIRNVYELDPQE 154
           P    +PS  GP  H  + +C  TD +  + Q+R  + L+ QE
Sbjct: 118 PRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVR--WFLNGQE 158


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,223,363
Number of Sequences: 62578
Number of extensions: 153220
Number of successful extensions: 266
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 8
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)