BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17706
(154 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D799|FMT_MOUSE Methionyl-tRNA formyltransferase, mitochondrial OS=Mus musculus
GN=Mtfmt PE=2 SV=3
Length = 386
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 47 LTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYL 94
+TPGFV + R S++L VRC DG +V KK +TA DF NGYL
Sbjct: 301 VTPGFVVYHRPSQMLLVRCKDG---WIGVRSVMLKKTLTATDFYNGYL 345
>sp|Q5I0C5|FMT_RAT Methionyl-tRNA formyltransferase, mitochondrial OS=Rattus
norvegicus GN=Mtfmt PE=2 SV=1
Length = 385
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 47 LTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVKNESDKRY 105
+TPG V + R S++L V C DG ++ KK +TA DF NGYL ++ Y
Sbjct: 301 VTPGSVVYHRPSQMLLVHCKDG---WIGVRSIMHKKTLTATDFYNGYLHAWYQKNSHAY 356
>sp|Q96DP5|FMT_HUMAN Methionyl-tRNA formyltransferase, mitochondrial OS=Homo sapiens
GN=MTFMT PE=2 SV=2
Length = 389
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 47 LTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYL 94
L PG V + + S++L V C DG +V KK +TA DF NGYL
Sbjct: 306 LIPGSVIYHKQSQILLVYCKDG---WIGVRSVMLKKSLTATDFYNGYL 350
>sp|B0RWA1|SYM_XANCB Methionine--tRNA ligase OS=Xanthomonas campestris pv. campestris
(strain B100) GN=metG PE=3 SV=1
Length = 694
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 41 NPITPELTPGFVSFDRGSKL-LRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGK 96
NP +P PGF+ D +KL LR+ GK ++C V G K+ + G LGK
Sbjct: 576 NPQSPTANPGFIGMDDFAKLDLRI----GKVLVCE--AVEGSDKLLRFELDAGELGK 626
>sp|O77480|FMT_BOVIN Methionyl-tRNA formyltransferase, mitochondrial OS=Bos taurus
GN=MTFMT PE=1 SV=2
Length = 390
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 47 LTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYL 94
+ PG V + + S++L V C D +V KK +TA DF NGYL
Sbjct: 310 VIPGSVIYHKQSQILLVCCKDD---WIGVRSVMLKKTLTATDFYNGYL 354
>sp|A8MLU1|COAX_ALKOO Type III pantothenate kinase OS=Alkaliphilus oremlandii (strain
OhILAs) GN=coaX PE=3 SV=1
Length = 265
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 10/119 (8%)
Query: 36 LTEETNPITPELTPGF-----VSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFK 90
++E+ + ++PG F++ +KL RV ++ K ++C + + +
Sbjct: 139 VSEDGEYLGGAISPGIKISSEALFEKAAKLPRVELINPKKVICKNTVSSMQAGIVY---- 194
Query: 91 NGYLGKVKNESDKRYKGMSTCPHSLTTPSGIGPCSHDGMTLCQTTDRFHSTNQIRNVYE 149
GY+G V+N K + + + G+ G D+F S + + +YE
Sbjct: 195 -GYIGLVENIVRNMKKELKSSSCKVIATGGLSTLIAGGTDSIDVVDKFLSLDGLNIIYE 252
>sp|Q8PMP0|SYM_XANAC Methionine--tRNA ligase OS=Xanthomonas axonopodis pv. citri (strain
306) GN=metG PE=3 SV=1
Length = 694
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 41 NPITPELTPGFVSFDRGSKL-LRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLG 95
NP +P TPGF+ D +KL LR+ GK + C V G K+ + G LG
Sbjct: 576 NPQSPIATPGFIGMDDFAKLDLRI----GKVLACE--FVEGSDKLLRFELDAGELG 625
>sp|Q7UHZ6|FMT_RHOBA Methionyl-tRNA formyltransferase OS=Rhodopirellula baltica (strain
SH1) GN=fmt PE=3 SV=1
Length = 335
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 61 LRVRCVDGKSILCSQITVAGKKKMTAVDFKNGY 93
L + C DG+ ++ ++ AGKK+M+ +DFK G+
Sbjct: 293 LAIGCGDGQ-VVIERLQPAGKKEMSGLDFKRGH 324
>sp|A1ALC4|FMT_PELPD Methionyl-tRNA formyltransferase OS=Pelobacter propionicus (strain
DSM 2379) GN=fmt PE=3 SV=1
Length = 319
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 48 TPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNG 92
PG V G +L V C+DG S+L ++ +AGKK++ + F G
Sbjct: 258 APGTVLCSTGGQL-EVACLDG-SLLIQELQLAGKKRLDSASFLAG 300
>sp|Q5H1J3|SYM_XANOR Methionine--tRNA ligase OS=Xanthomonas oryzae pv. oryzae (strain
KACC10331 / KXO85) GN=metG PE=3 SV=1
Length = 694
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 31 EPTDRLTEETNPITPELTPGFVSFDRGSKL-LRVRCVDGKSILCSQITVAGKKKMTAVDF 89
+P + NP +P P F+ D +KL LR+ GK ++C V G K+ +
Sbjct: 566 KPDTKPAAAANPQSPISNPSFIGMDDFAKLDLRI----GKVLVCE--CVEGSDKLLRFEL 619
Query: 90 KNGYLGK 96
G LGK
Sbjct: 620 DAGELGK 626
>sp|B2SRQ4|SYM_XANOP Methionine--tRNA ligase OS=Xanthomonas oryzae pv. oryzae (strain
PXO99A) GN=metG PE=3 SV=1
Length = 694
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 31 EPTDRLTEETNPITPELTPGFVSFDRGSKL-LRVRCVDGKSILCSQITVAGKKKMTAVDF 89
+P + NP +P P F+ D +KL LR+ GK ++C V G K+ +
Sbjct: 566 KPDTKPAAAANPQSPISNPSFIGMDDFAKLDLRI----GKVLVCE--CVEGSDKLLRFEL 619
Query: 90 KNGYLGK 96
G LGK
Sbjct: 620 DAGELGK 626
>sp|Q2P4E9|SYM_XANOM Methionine--tRNA ligase OS=Xanthomonas oryzae pv. oryzae (strain
MAFF 311018) GN=metG PE=3 SV=1
Length = 694
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 31 EPTDRLTEETNPITPELTPGFVSFDRGSKL-LRVRCVDGKSILCSQITVAGKKKMTAVDF 89
+P + NP +P P F+ D +KL LR+ GK ++C V G K+ +
Sbjct: 566 KPDTKPAAAANPQSPISNPSFIGMDDFAKLDLRI----GKVLVCE--CVEGSDKLLRFEL 619
Query: 90 KNGYLGK 96
G LGK
Sbjct: 620 DAGELGK 626
>sp|A5GBL0|FMT_GEOUR Methionyl-tRNA formyltransferase OS=Geobacter uraniireducens
(strain Rf4) GN=fmt PE=3 SV=1
Length = 313
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 46 ELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGY 93
E TPG V G + L V C G SI+ ++ + GKK++ A DF GY
Sbjct: 256 EGTPGSV-IRAGREGLEVAC-SGGSIVIEELQLEGKKRLHAGDFLAGY 301
>sp|Q3MHM8|AR6P6_BOVIN ADP-ribosylation factor-like protein 6-interacting protein 6 OS=Bos
taurus GN=ARL6IP6 PE=2 SV=1
Length = 226
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 30 KEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRC-VDGKSILCS---QITVAGKKKMT 85
K+P + + +P+ P+ G S D G K L R V SILCS I +A +T
Sbjct: 69 KDPVLQPDGDGSPVLPDKRNGIFSADAGGKALARRWPVQVLSILCSLLFAILLACLLAIT 128
Query: 86 AVDFKNGYLGKVKNESD 102
+ K + +KNE D
Sbjct: 129 YLIVKELHAENLKNEDD 145
>sp|Q8F3K6|FMT_LEPIN Methionyl-tRNA formyltransferase OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar Lai (strain 56601)
GN=fmt PE=3 SV=2
Length = 315
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 36 LTEETNPITPELTPGFVS-FDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGY 93
L+ E NP TPG + D+ K L +C DG+ + ++ K +MTA DF NG+
Sbjct: 255 LSLEINP-----TPGKLKRLDK--KRLLTQCGDGRFLEILELQPENKNRMTASDFLNGF 306
>sp|Q72S34|FMT_LEPIC Methionyl-tRNA formyltransferase OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar copenhageni
(strain Fiocruz L1-130) GN=fmt PE=3 SV=1
Length = 315
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 36 LTEETNPITPELTPGFVS-FDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGY 93
L+ E NP TPG + D+ K L +C DG+ + ++ K +MTA DF NG+
Sbjct: 255 LSLEINP-----TPGKLKRLDK--KRLLTQCGDGRFLEILELQPENKNRMTASDFLNGF 306
>sp|Q82ZD8|FMT_ENTFA Methionyl-tRNA formyltransferase OS=Enterococcus faecalis (strain
ATCC 700802 / V583) GN=fmt PE=3 SV=1
Length = 313
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 48 TPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVKNESDK 103
PG + R K L + C +G + ++ AGK ++T +F NG +G+ E DK
Sbjct: 258 APGTI-IQRSKKALWIACGEGTVLQIDRLQPAGKGQLTIQEFLNG-VGQNVAEKDK 311
>sp|B9M2D5|FMT_GEOSF Methionyl-tRNA formyltransferase OS=Geobacter sp. (strain FRC-32)
GN=fmt PE=3 SV=1
Length = 312
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 49 PGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGY 93
PG V G + L V C G S++ ++ + GKK++ A DF GY
Sbjct: 256 PGTV-IGAGRQGLEVACTGG-SVIIEELQLEGKKRLPAGDFLAGY 298
>sp|Q3BVP1|SYM_XANC5 Methionine--tRNA ligase OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=metG PE=3 SV=1
Length = 694
Score = 29.3 bits (64), Expect = 8.8, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 41 NPITPELTPGFVSFDRGSKL-LRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGK 96
NP + PGF+ D +KL LR+ GK ++C V G K+ + G LGK
Sbjct: 576 NPESQTTNPGFIGMDDFAKLDLRI----GKVLVCE--FVEGSDKLLRFELDAGELGK 626
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,816,630
Number of Sequences: 539616
Number of extensions: 2574605
Number of successful extensions: 6101
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 6044
Number of HSP's gapped (non-prelim): 81
length of query: 154
length of database: 191,569,459
effective HSP length: 107
effective length of query: 47
effective length of database: 133,830,547
effective search space: 6290035709
effective search space used: 6290035709
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)